Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65443.t1 | XP_013467040.1 | 89.5 | 1195 | 94 | 3 | 1 | 1163 | 1 | 1195 | 0.00E+00 | 2003 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65443.t1 | O80386 | 30.9 | 627 | 338 | 22 | 1 | 595 | 1 | 564 | 2.0e-44 | 183.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65443.t1 | A0A072VSG5 | 89.5 | 1195 | 94 | 3 | 1 | 1163 | 1 | 1195 | 0.0e+00 | 2003.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059154 | MS.gene65443 | 0.813261 | 2.80E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65443.t1 | MTR_1g041465 | 91.046 | 1195 | 75 | 3 | 1 | 1163 | 1 | 1195 | 0.0 | 2170 |
| MS.gene65443.t1 | MTR_1g075740 | 58.423 | 1294 | 377 | 25 | 1 | 1160 | 1 | 1267 | 0.0 | 1296 |
| MS.gene65443.t1 | MTR_2g012990 | 33.832 | 535 | 267 | 20 | 1 | 480 | 1 | 503 | 6.62e-63 | 232 |
| MS.gene65443.t1 | MTR_2g079850 | 34.050 | 558 | 251 | 22 | 1 | 491 | 1 | 508 | 1.94e-62 | 233 |
| MS.gene65443.t1 | MTR_8g022280 | 34.979 | 243 | 119 | 5 | 1 | 242 | 1 | 205 | 1.36e-31 | 135 |
| MS.gene65443.t1 | MTR_2g079850 | 29.268 | 369 | 182 | 18 | 189 | 491 | 1 | 356 | 4.55e-18 | 90.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65443.t1 | AT5G43310 | 41.415 | 1258 | 549 | 37 | 1 | 1154 | 1 | 1174 | 0.0 | 724 |
| MS.gene65443.t1 | AT5G43310 | 41.172 | 1246 | 545 | 37 | 1 | 1142 | 1 | 1162 | 0.0 | 707 |
| MS.gene65443.t1 | AT5G43310 | 41.172 | 1246 | 545 | 37 | 1 | 1142 | 1 | 1162 | 0.0 | 707 |
| MS.gene65443.t1 | AT5G43310 | 39.620 | 1315 | 549 | 38 | 1 | 1154 | 1 | 1231 | 0.0 | 697 |
| MS.gene65443.t1 | AT5G43310 | 43.369 | 1033 | 418 | 28 | 1 | 943 | 1 | 956 | 0.0 | 657 |
| MS.gene65443.t1 | AT1G61100 | 41.246 | 337 | 162 | 10 | 1 | 324 | 1 | 314 | 2.11e-63 | 232 |
| MS.gene65443.t1 | AT1G61100 | 40.950 | 337 | 162 | 10 | 1 | 324 | 1 | 313 | 3.88e-63 | 231 |
| MS.gene65443.t1 | AT4G27430 | 34.563 | 515 | 268 | 18 | 1 | 485 | 1 | 476 | 1.37e-62 | 233 |
| MS.gene65443.t1 | AT4G27430 | 34.563 | 515 | 268 | 18 | 1 | 485 | 1 | 476 | 1.37e-62 | 233 |
| MS.gene65443.t1 | AT3G14172 | 37.975 | 237 | 106 | 5 | 7 | 242 | 7 | 203 | 9.57e-36 | 148 |
| MS.gene65443.t1 | AT3G14172 | 35.443 | 237 | 104 | 6 | 7 | 242 | 7 | 195 | 5.69e-29 | 126 |
| MS.gene65443.t1 | AT1G17360 | 29.918 | 244 | 112 | 3 | 1 | 240 | 1 | 189 | 9.75e-28 | 122 |
| MS.gene65443.t1 | AT1G72410 | 30.417 | 240 | 123 | 3 | 1 | 240 | 1 | 196 | 1.67e-27 | 121 |
| MS.gene65443.t1 | AT1G72410 | 30.417 | 240 | 123 | 3 | 1 | 240 | 1 | 196 | 2.00e-27 | 121 |
| MS.gene65443.t1 | AT3G14172 | 34.021 | 194 | 87 | 5 | 50 | 242 | 12 | 165 | 5.99e-19 | 94.0 |
Find 259 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCTTTCAATAAATAATTT+TGG | 0.125059 | 1.1:-25591460 | None:intergenic |
| GCAATACTGATTCCGAAAAT+TGG | 0.139663 | 1.1:+25591120 | MS.gene65443:CDS |
| GTGAAGAACCGCCTACATTT+TGG | 0.144291 | 1.1:-25591886 | None:intergenic |
| CCTTTATCAGCTCCTCTTTC+AGG | 0.158311 | 1.1:-25591821 | None:intergenic |
| TTCCCTATCAGAACTGTTTC+TGG | 0.176787 | 1.1:+25592462 | MS.gene65443:CDS |
| TTTCCATTTCAAACTGGTTT+TGG | 0.221184 | 1.1:-25591508 | None:intergenic |
| TTCGGTTTACCCCTTCTTAT+TGG | 0.223545 | 1.1:-25592028 | None:intergenic |
| AAAGTAGAACCTTGAGAATA+TGG | 0.244404 | 1.1:-25593871 | None:intergenic |
| TTGCTATGTAATTGATATTT+CGG | 0.254052 | 1.1:-25591268 | None:intergenic |
| GCATTTCCCTCAATATTTAC+TGG | 0.254633 | 1.1:-25591719 | None:intergenic |
| CAATTCAGCTGGTTGATAAT+TGG | 0.258877 | 1.1:-25591789 | None:intergenic |
| TCAGATCATGCCAATGAAAT+TGG | 0.271227 | 1.1:+25594132 | MS.gene65443:CDS |
| CTCATCATGGATTCTCCCCT+TGG | 0.277319 | 1.1:+25590910 | MS.gene65443:CDS |
| CAGTTCTGATAGGGAATCTT+TGG | 0.290351 | 1.1:-25592455 | None:intergenic |
| ACTCAGTTTCAAGCAAATTA+AGG | 0.300293 | 1.1:+25592544 | MS.gene65443:CDS |
| AACCAGTTTGAAATGGAAAA+AGG | 0.304808 | 1.1:+25591512 | MS.gene65443:CDS |
| TCCAATGGACTAGGTTTATT+CGG | 0.311582 | 1.1:-25592046 | None:intergenic |
| ATGTTATTCAAACACTGATT+TGG | 0.314913 | 1.1:+25591634 | MS.gene65443:CDS |
| CACAGATTTGTGAACTTCTT+CGG | 0.318693 | 1.1:-25591342 | None:intergenic |
| AGTCAAATCTAAAGGATCTT+TGG | 0.322673 | 1.1:-25591567 | None:intergenic |
| TTTCTCAGGAAGGAAGATTA+AGG | 0.327949 | 1.1:+25589081 | MS.gene65443:intron |
| TTTCTCAAGTGTAGAGTTCC+TGG | 0.329903 | 1.1:-25593998 | None:intergenic |
| CTCAGCTACTGGGCACAATA+TGG | 0.331389 | 1.1:+25594107 | MS.gene65443:CDS |
| TGTGTAAATTAGGTTTGATT+TGG | 0.342294 | 1.1:+25587408 | MS.gene65443:intron |
| CGTTAGCACACCTGAGATAC+TGG | 0.344479 | 1.1:+25588183 | MS.gene65443:CDS |
| TGATGGCATGGTTGACTTGA+TGG | 0.344805 | 1.1:-25592337 | None:intergenic |
| TTAAGGCGGCTGTTAAAGTT+TGG | 0.352341 | 1.1:+25594069 | MS.gene65443:CDS |
| TTATCCAACATCTTAGATCT+TGG | 0.354724 | 1.1:-25591950 | None:intergenic |
| GCCTTCAAGTGGCATAGAAA+TGG | 0.356780 | 1.1:-25587481 | None:intergenic |
| TGCATAAATGCACTGTTTCC+TGG | 0.360729 | 1.1:-25591011 | None:intergenic |
| GTAGAAAATTCATGTCTCTA+TGG | 0.365149 | 1.1:+25589948 | MS.gene65443:CDS |
| CTGATTGTTATTGATGCCTT+AGG | 0.372566 | 1.1:-25592624 | None:intergenic |
| AACAGCCGCCTTAACCCTTT+CGG | 0.373492 | 1.1:-25594060 | None:intergenic |
| ATCGACTGGTCTTCTTCCTT+CGG | 0.376420 | 1.1:-25591214 | None:intergenic |
| ACCATTCACTCCAATTTCAT+TGG | 0.377073 | 1.1:-25594142 | None:intergenic |
| AACGGTGGGAAAACAAATTC+AGG | 0.377594 | 1.1:+25590085 | MS.gene65443:CDS |
| CCCATTTCTATGCCACTTGA+AGG | 0.382899 | 1.1:+25587480 | MS.gene65443:CDS |
| TAACCAAAACCAGTTTGAAA+TGG | 0.386484 | 1.1:+25591505 | MS.gene65443:CDS |
| GCAAAGACTGAACATTCTTC+TGG | 0.387326 | 1.1:+25591287 | MS.gene65443:CDS |
| GCACCTTCTGAATTCATAGA+AGG | 0.389192 | 1.1:-25592864 | None:intergenic |
| AAATACATCCCACACTGAAA+TGG | 0.391049 | 1.1:+25590051 | MS.gene65443:CDS |
| CGTGCACGAAATTCTGAGTA+TGG | 0.391898 | 1.1:+25593904 | MS.gene65443:CDS |
| CCTGAAAGAGGAGCTGATAA+AGG | 0.399892 | 1.1:+25591821 | MS.gene65443:CDS |
| GTTTCTCATCGTTGATATCA+AGG | 0.404605 | 1.1:-25592995 | None:intergenic |
| GGTTGACTTGATGGTTGGTT+TGG | 0.410947 | 1.1:-25592328 | None:intergenic |
| CCACCAGAAACAGTTCTGAT+AGG | 0.414129 | 1.1:-25592465 | None:intergenic |
| GCGATGTCACGTGGTTTACC+AGG | 0.414225 | 1.1:+25587563 | MS.gene65443:CDS |
| AAGAATCACAACTCAGCTAC+TGG | 0.415755 | 1.1:+25594096 | MS.gene65443:CDS |
| TTTGCACGTGCTGTTGCTGC+AGG | 0.417654 | 1.1:+25589707 | MS.gene65443:CDS |
| TATGCTTCTATAGGTTTGTT+CGG | 0.418446 | 1.1:+25588158 | MS.gene65443:intron |
| TCAAGACCTCCAACCTTGTA+AGG | 0.420661 | 1.1:-25589133 | None:intergenic |
| AAGGTGCTTCCATTTGCTTC+AGG | 0.422954 | 1.1:-25589235 | None:intergenic |
| TGCTCAAGATCAAATGGATA+AGG | 0.428238 | 1.1:+25587504 | MS.gene65443:CDS |
| AGCAGAAATCTTTCTTCTCT+CGG | 0.430111 | 1.1:-25592748 | None:intergenic |
| CAACATCTTAGATCTTGGTT+TGG | 0.430532 | 1.1:-25591945 | None:intergenic |
| GCACCACCCTTCTCTTGCTT+AGG | 0.430866 | 1.1:-25592591 | None:intergenic |
| AAGAATCACACTACCTTCAT+TGG | 0.433393 | 1.1:-25594169 | None:intergenic |
| TGTTTCTTTGTTTGCAGTGA+TGG | 0.434867 | 1.1:-25592354 | None:intergenic |
| CGTGCTTCATCCAATGGACT+AGG | 0.435666 | 1.1:-25592055 | None:intergenic |
| GAGGTTGAATTCAACTGATA+AGG | 0.436286 | 1.1:+25591406 | MS.gene65443:CDS |
| CAATACTGATTCCGAAAATT+GGG | 0.438108 | 1.1:+25591121 | MS.gene65443:CDS |
| TGGCCTGTTCATTCTCTCCC+AGG | 0.443478 | 1.1:+25590930 | MS.gene65443:CDS |
| ATTGTTCTTGTGCCTGAGAA+TGG | 0.448018 | 1.1:+25587538 | MS.gene65443:CDS |
| AGGGAATCTTTGGAAGGGTA+AGG | 0.449155 | 1.1:-25592445 | None:intergenic |
| CCCTACTATCCGACTTATCC+AGG | 0.450089 | 1.1:+25590993 | MS.gene65443:CDS |
| TTCTGAGTCCATTTCAGTGT+GGG | 0.450980 | 1.1:-25590059 | None:intergenic |
| GAAGAGGCAATTGCAATTCA+AGG | 0.453910 | 1.1:+25588244 | MS.gene65443:CDS |
| GTAGAGAAGTCTGCACGATT+AGG | 0.454317 | 1.1:-25590025 | None:intergenic |
| CTTTGTTTGCAGTGATGGCA+TGG | 0.455953 | 1.1:-25592349 | None:intergenic |
| ATACGTGCTTCACTTGTGAT+TGG | 0.456390 | 1.1:-25593163 | None:intergenic |
| CCTTCAAGTGGCATAGAAAT+GGG | 0.457201 | 1.1:-25587480 | None:intergenic |
| TGGAACACTGGCAAAGCACC+TGG | 0.458080 | 1.1:-25590948 | None:intergenic |
| GAAGGCTGCTCAAGATCAAA+TGG | 0.458794 | 1.1:+25587498 | MS.gene65443:CDS |
| GGAAATAATTCCATAGGGAT+TGG | 0.461155 | 1.1:+25588265 | MS.gene65443:CDS |
| ATATTCTCAAGGTTCTACTT+TGG | 0.462744 | 1.1:+25593873 | MS.gene65443:CDS |
| TTCCAAAATTATTTATTGAA+AGG | 0.463711 | 1.1:+25591458 | MS.gene65443:CDS |
| GATTTGGTCATAACTGTGAA+TGG | 0.465222 | 1.1:+25587424 | MS.gene65443:CDS |
| AGCTTGGAAATTACATCAAT+CGG | 0.465229 | 1.1:+25593943 | MS.gene65443:CDS |
| CAAGGTTCTACTTTGGAAGA+TGG | 0.467240 | 1.1:+25593880 | MS.gene65443:CDS |
| ATTGACCTTGAATATTAGCT+TGG | 0.467631 | 1.1:-25590884 | None:intergenic |
| AAGTAGAACCTTGAGAATAT+GGG | 0.468607 | 1.1:-25593870 | None:intergenic |
| GGAAACCAAGCTAATATTCA+AGG | 0.469213 | 1.1:+25590879 | MS.gene65443:intron |
| AGATGACAAAGATAAAGAAA+TGG | 0.471735 | 1.1:+25593049 | MS.gene65443:CDS |
| GGAAGATATAAAACGTATAG+AGG | 0.473176 | 1.1:+25592254 | MS.gene65443:CDS |
| AGAAAGTAAATTCCTCAAAG+TGG | 0.473440 | 1.1:-25594355 | None:intergenic |
| ACAACAGTCTTATCAATCAT+AGG | 0.474737 | 1.1:-25592942 | None:intergenic |
| AAGATCTAAGATGTTGGATA+AGG | 0.475169 | 1.1:+25591952 | MS.gene65443:CDS |
| TCCTGGATAAGTCGGATAGT+AGG | 0.475381 | 1.1:-25590994 | None:intergenic |
| GTGACATCGCATCCATTCTC+AGG | 0.478150 | 1.1:-25587550 | None:intergenic |
| ACTTTGATCAGCATGTAGTC+GGG | 0.479549 | 1.1:-25591060 | None:intergenic |
| AAACAAGTGGAAAGCAATGA+AGG | 0.479950 | 1.1:+25588389 | MS.gene65443:CDS |
| AGGACTCACCGAAAGGGTTA+AGG | 0.481628 | 1.1:+25594052 | MS.gene65443:CDS |
| GCCAATGAAATTGGAGTGAA+TGG | 0.483121 | 1.1:+25594141 | MS.gene65443:CDS |
| TAAAGCACCTCCCACGAGCT+TGG | 0.483432 | 1.1:+25593927 | MS.gene65443:CDS |
| ATTCAAGGAAATAATTCCAT+AGG | 0.484407 | 1.1:+25588259 | MS.gene65443:CDS |
| ATCGTTGATATCAAGGGCAC+AGG | 0.484960 | 1.1:-25592988 | None:intergenic |
| TGGAAGGGTAAGGATGATCT+TGG | 0.485146 | 1.1:-25592435 | None:intergenic |
| GCAGCCAGGTTGTCCGCCTA+TGG | 0.485231 | 1.1:+25591031 | MS.gene65443:CDS |
| ACACAGCCGCCTGAAGCAAA+TGG | 0.485624 | 1.1:+25589226 | MS.gene65443:CDS |
| AAAGATCCTTTAGATTTGAC+TGG | 0.486545 | 1.1:+25591569 | MS.gene65443:CDS |
| TAGTTAAACCACGGAGCTCT+AGG | 0.487681 | 1.1:+25592694 | MS.gene65443:CDS |
| AGACCGTTGGGCCAATAAGA+AGG | 0.489549 | 1.1:+25592017 | MS.gene65443:CDS |
| GGTATGCCTTCGACTGCATA+AGG | 0.496321 | 1.1:-25590972 | None:intergenic |
| GAAAGCAGTTGTTCCTTACA+AGG | 0.498826 | 1.1:+25589120 | MS.gene65443:CDS |
| TGAGGATTCTCATTTACCTC+AGG | 0.499698 | 1.1:-25594024 | None:intergenic |
| GGCAACAAGCTCAATTCAGC+TGG | 0.500888 | 1.1:-25591800 | None:intergenic |
| AACAGTGCATTTATGCAGCC+AGG | 0.501107 | 1.1:+25591017 | MS.gene65443:CDS |
| TATACACGTTCCAGTATCTC+AGG | 0.501233 | 1.1:-25588193 | None:intergenic |
| TCAGATGTGGCTGCTGTCAA+TGG | 0.501499 | 1.1:+25591608 | MS.gene65443:CDS |
| ACTTACAGTGCCAATCCCTA+TGG | 0.501968 | 1.1:-25588275 | None:intergenic |
| GGCATGGTTGACTTGATGGT+TGG | 0.505042 | 1.1:-25592333 | None:intergenic |
| CTGAAAGAGGAGCTGATAAA+GGG | 0.505391 | 1.1:+25591822 | MS.gene65443:CDS |
| ACCGAATAAACCTAGTCCAT+TGG | 0.505979 | 1.1:+25592045 | MS.gene65443:CDS |
| AATGAACTCTTCAACAAGGT+TGG | 0.506439 | 1.1:+25586587 | None:intergenic |
| AAATGTAGGCGGTTCTTCAC+AGG | 0.507600 | 1.1:+25591889 | MS.gene65443:CDS |
| GAGAGGGAAGGTTTACAGAC+TGG | 0.508456 | 1.1:+25591188 | MS.gene65443:CDS |
| TCTCCAGGACTCTCAAAAGC+TGG | 0.508606 | 1.1:-25589646 | None:intergenic |
| TTGAGCTTGTTGCCTGAAAG+AGG | 0.509072 | 1.1:+25591809 | MS.gene65443:CDS |
| TACTTTGATCAGCATGTAGT+CGG | 0.511799 | 1.1:-25591061 | None:intergenic |
| CTATCAGAACTACTTGGTGT+AGG | 0.513355 | 1.1:-25591989 | None:intergenic |
| CGTGCTCGTGCTTCATCCAA+TGG | 0.516240 | 1.1:-25592061 | None:intergenic |
| AATGATCCAGTAAATATTGA+GGG | 0.517326 | 1.1:+25591713 | MS.gene65443:CDS |
| GGAAATTACATCAATCGGTA+TGG | 0.517461 | 1.1:+25593948 | MS.gene65443:CDS |
| GACCGTTGGGCCAATAAGAA+GGG | 0.517785 | 1.1:+25592018 | MS.gene65443:CDS |
| CATAACTGTGAATGGAAAGA+AGG | 0.518280 | 1.1:+25587432 | MS.gene65443:CDS |
| ACCCCTTCTTATTGGCCCAA+CGG | 0.519584 | 1.1:-25592020 | None:intergenic |
| GCTCAAGATCAAATGGATAA+GGG | 0.523028 | 1.1:+25587505 | MS.gene65443:CDS |
| TTTACGTCTGTCTGATCGAC+TGG | 0.523536 | 1.1:-25591228 | None:intergenic |
| GCTTCGAAACGGCGATAACA+AGG | 0.525377 | 1.1:-25594529 | None:intergenic |
| TCCTCCATAGGCGGACAACC+TGG | 0.526889 | 1.1:-25591035 | None:intergenic |
| CCTGGATAAGTCGGATAGTA+GGG | 0.528333 | 1.1:-25590993 | None:intergenic |
| GGGAGAGAATGAACAGGCCA+AGG | 0.532488 | 1.1:-25590927 | None:intergenic |
| CACCAGAAACAGTTCTGATA+GGG | 0.533084 | 1.1:-25592464 | None:intergenic |
| GATTAAGGAGGATAGTAATG+TGG | 0.534555 | 1.1:+25589096 | MS.gene65443:CDS |
| CAATGATCCAGTAAATATTG+AGG | 0.535175 | 1.1:+25591712 | MS.gene65443:CDS |
| TTCGGTGAGTCCTTCACCTG+AGG | 0.539668 | 1.1:-25594042 | None:intergenic |
| GCACCTGGGAGAGAATGAAC+AGG | 0.539952 | 1.1:-25590933 | None:intergenic |
| AATCACACTACCTTCATTGG+TGG | 0.540126 | 1.1:-25594166 | None:intergenic |
| AACCTTGAGAATATGGGGTG+CGG | 0.540426 | 1.1:-25593864 | None:intergenic |
| TGCTTAGGTTCATGCAGAAG+AGG | 0.540945 | 1.1:-25592576 | None:intergenic |
| TCGACACAGAAGACATTCCA+TGG | 0.541792 | 1.1:+25591085 | MS.gene65443:CDS |
| AGTTCCCGAATGAAGGAAAA+CGG | 0.542855 | 1.1:+25591759 | MS.gene65443:CDS |
| CCTATCAGAACTGTTTCTGG+TGG | 0.542960 | 1.1:+25592465 | MS.gene65443:CDS |
| TTCAAGGAAATAATTCCATA+GGG | 0.544467 | 1.1:+25588260 | MS.gene65443:CDS |
| ACGTATAGAGGCTTTAAAGA+AGG | 0.544709 | 1.1:+25592266 | MS.gene65443:CDS |
| ACCTTGAGAATATGGGGTGC+GGG | 0.545773 | 1.1:-25593863 | None:intergenic |
| CAAACCAAGATCTAAGATGT+TGG | 0.546643 | 1.1:+25591946 | MS.gene65443:CDS |
| TTTCGACATCGACTCCATAC+CGG | 0.547087 | 1.1:+25589730 | MS.gene65443:CDS |
| AAAATGCAGGCCCAAAATGT+AGG | 0.547274 | 1.1:+25591875 | MS.gene65443:CDS |
| TCTCGGCTGTTGCTTCGAAA+CGG | 0.548968 | 1.1:-25594540 | None:intergenic |
| GTGAATGGTTCCACCAATGA+AGG | 0.549246 | 1.1:+25594156 | MS.gene65443:CDS |
| GTTATGAAGACACACCTTCG+AGG | 0.549746 | 1.1:-25593186 | None:intergenic |
| TGATGTAATTTCCAAGCTCG+TGG | 0.549858 | 1.1:-25593938 | None:intergenic |
| GACTCCGAGTTCCCGAATGA+AGG | 0.550593 | 1.1:+25591752 | MS.gene65443:CDS |
| AAGAAGGAGAAAATTGCCTC+AGG | 0.552161 | 1.1:+25587448 | MS.gene65443:CDS |
| TGGGGTGCGGGATGTTTCCT+CGG | 0.554213 | 1.1:-25593851 | None:intergenic |
| ACTGCCAGTACTCAGTCTGC+TGG | 0.554392 | 1.1:-25592517 | None:intergenic |
| GACTTACCAGTCAAATCTAA+AGG | 0.554520 | 1.1:-25591575 | None:intergenic |
| AAACTTTGATCCTTTATGCA+CGG | 0.554780 | 1.1:-25592400 | None:intergenic |
| GGAGCTCTAGGACAATTTCA+AGG | 0.555550 | 1.1:+25592706 | MS.gene65443:CDS |
| ACACCTTTCGATAGTTCCCC+TGG | 0.558995 | 1.1:-25587581 | None:intergenic |
| GAACCGACTTACGTGTCTCC+AGG | 0.559003 | 1.1:-25589661 | None:intergenic |
| AGAGCTCCGTGGTTTAACTA+AGG | 0.560859 | 1.1:-25592691 | None:intergenic |
| AAGAAACAGACGGAGGACAT+TGG | 0.562247 | 1.1:+25591429 | MS.gene65443:CDS |
| AAGACTGTTGTGATGCTTGA+GGG | 0.563067 | 1.1:+25592954 | MS.gene65443:CDS |
| GATCTTGAGCAGCCTTCAAG+TGG | 0.564742 | 1.1:-25587492 | None:intergenic |
| TGCACTAGACTACAAAATGC+AGG | 0.565964 | 1.1:+25591862 | MS.gene65443:CDS |
| GGATGAAATGGATATAGAGA+GGG | 0.567513 | 1.1:+25591172 | MS.gene65443:CDS |
| GCACTGTTTCCTGGATAAGT+CGG | 0.567853 | 1.1:-25591002 | None:intergenic |
| TGCCTTCGACTGCATAAGGA+TGG | 0.569650 | 1.1:-25590968 | None:intergenic |
| TGAAATCTTACAAATTGAAG+AGG | 0.569859 | 1.1:+25588228 | MS.gene65443:CDS |
| TTTCTCATCGTTGATATCAA+GGG | 0.570208 | 1.1:-25592994 | None:intergenic |
| GAATGTTACCTAGTTCTAGT+TGG | 0.570813 | 1.1:-25586633 | None:intergenic |
| GAAAGCATGAGAGTGGCCTA+TGG | 0.573218 | 1.1:+25589975 | MS.gene65443:CDS |
| AGGTGAAGGACTCACCGAAA+GGG | 0.574266 | 1.1:+25594046 | MS.gene65443:CDS |
| TCTGATAGGGAATCTTTGGA+AGG | 0.574354 | 1.1:-25592451 | None:intergenic |
| AGGATGAAATGGATATAGAG+AGG | 0.574373 | 1.1:+25591171 | MS.gene65443:CDS |
| TGAGGTAAATGAGAATCCTC+AGG | 0.574652 | 1.1:+25594026 | MS.gene65443:CDS |
| TGTAGTCGGGGATCCTCCAT+AGG | 0.574800 | 1.1:-25591047 | None:intergenic |
| GAAAGTAAATTCCTCAAAGT+GGG | 0.576384 | 1.1:-25594354 | None:intergenic |
| CGGGTAAGGCATCTTTGAAG+AGG | 0.578595 | 1.1:+25591387 | MS.gene65443:CDS |
| GCATGAACCTAAGCAAGAGA+AGG | 0.580604 | 1.1:+25592584 | MS.gene65443:CDS |
| AAAACCAGCAGACTGAGTAC+TGG | 0.581304 | 1.1:+25592513 | MS.gene65443:CDS |
| AGAAAACCAAATAAAACAAG+TGG | 0.581755 | 1.1:+25588376 | MS.gene65443:CDS |
| GCCAGGTTGTCCGCCTATGG+AGG | 0.582828 | 1.1:+25591034 | MS.gene65443:CDS |
| GTGAACTTCTTCGGTTTCAG+TGG | 0.583630 | 1.1:-25591333 | None:intergenic |
| GAGCACACGTGTCTGACACC+AGG | 0.585272 | 1.1:+25593980 | MS.gene65443:CDS |
| GATGTAATTTCCAAGCTCGT+GGG | 0.585616 | 1.1:-25593937 | None:intergenic |
| ATTGCCGTGTCTATTATCCA+TGG | 0.587443 | 1.1:-25591102 | None:intergenic |
| TTCCATCCTTATGCAGTCGA+AGG | 0.589892 | 1.1:+25590966 | MS.gene65443:CDS |
| ACAGCAGCCACATCTGATGA+AGG | 0.590451 | 1.1:-25591602 | None:intergenic |
| AACTAAGGAAGTCGGACGAA+TGG | 0.590497 | 1.1:-25592676 | None:intergenic |
| AAGCTTCGATTTCAAGCCAT+AGG | 0.590742 | 1.1:-25589991 | None:intergenic |
| TGGTGCTGCAAACAATCCTA+AGG | 0.591197 | 1.1:+25592608 | MS.gene65443:CDS |
| AGAATCACAACTCAGCTACT+GGG | 0.592893 | 1.1:+25594097 | MS.gene65443:CDS |
| TCAGCAAATGACATCAAAGC+CGG | 0.600657 | 1.1:-25589749 | None:intergenic |
| GACAAAAGAGAATCGCTGCT+AGG | 0.600959 | 1.1:+25592292 | MS.gene65443:CDS |
| AAATGACATCAAAGCCGGTA+TGG | 0.601021 | 1.1:-25589744 | None:intergenic |
| AAATGAGAATCCTCAGGTGA+AGG | 0.601096 | 1.1:+25594032 | MS.gene65443:CDS |
| GGAGAGAATGAACAGGCCAA+GGG | 0.602517 | 1.1:-25590926 | None:intergenic |
| CTCAGGAAGGAAGATTAAGG+AGG | 0.603054 | 1.1:+25589084 | MS.gene65443:intron |
| TTTCTGAGTCCATTTCAGTG+TGG | 0.604849 | 1.1:-25590060 | None:intergenic |
| TTAATTTGCTTGAAACTGAG+TGG | 0.605033 | 1.1:-25592542 | None:intergenic |
| TCGGTTCTGCAGAAAGAGCA+AGG | 0.606081 | 1.1:+25589677 | MS.gene65443:CDS |
| CATGAACCTAAGCAAGAGAA+GGG | 0.607805 | 1.1:+25592585 | MS.gene65443:CDS |
| GTCACATCCTTCATCAGATG+TGG | 0.610196 | 1.1:+25591595 | MS.gene65443:CDS |
| CTGATAGGGAATCTTTGGAA+GGG | 0.610358 | 1.1:-25592450 | None:intergenic |
| AACAAGTGGAAAGCAATGAA+GGG | 0.611055 | 1.1:+25588390 | MS.gene65443:CDS |
| TGTGAATGATGACTCAATCA+TGG | 0.612634 | 1.1:+25591676 | MS.gene65443:CDS |
| CGATGTCACGTGGTTTACCA+GGG | 0.613143 | 1.1:+25587564 | MS.gene65443:CDS |
| ATCAACGATGAGAAACCAAG+AGG | 0.613605 | 1.1:+25593002 | MS.gene65443:CDS |
| CAGGTGAAGGACTCACCGAA+AGG | 0.614742 | 1.1:+25594045 | MS.gene65443:CDS |
| AAGCCTTCTATGAATTCAGA+AGG | 0.616561 | 1.1:+25592861 | MS.gene65443:CDS |
| AGCTCACACCAACTAGAACT+AGG | 0.617680 | 1.1:+25586625 | MS.gene65443:CDS |
| AATTTCATCTCTATCATCAG+TGG | 0.620734 | 1.1:-25592919 | None:intergenic |
| AATGGAAGCACCTTGTCACA+AGG | 0.620770 | 1.1:+25589244 | MS.gene65443:CDS |
| TCAACGATGAGAAACCAAGA+GGG | 0.623201 | 1.1:+25593003 | MS.gene65443:CDS |
| TCCCGCACCCCATATTCTCA+AGG | 0.624442 | 1.1:+25593862 | MS.gene65443:CDS |
| TCGTTGATATCAAGGGCACA+GGG | 0.630937 | 1.1:-25592987 | None:intergenic |
| ACCGTTGGGCCAATAAGAAG+GGG | 0.632454 | 1.1:+25592019 | MS.gene65443:CDS |
| ATCTAGCAGTCACACTGCCG+AGG | 0.633660 | 1.1:+25593834 | MS.gene65443:CDS |
| CTTTGATCAGCATGTAGTCG+GGG | 0.635109 | 1.1:-25591059 | None:intergenic |
| TGGAAAAGAAAGCATGAGAG+TGG | 0.636097 | 1.1:+25589968 | MS.gene65443:CDS |
| AGTAGAACCTTGAGAATATG+GGG | 0.636460 | 1.1:-25593869 | None:intergenic |
| GTGCTTCCATTTGCTTCAGG+CGG | 0.638764 | 1.1:-25589232 | None:intergenic |
| CAGCAATGAACTCTTCAACA+AGG | 0.641291 | 1.1:+25586583 | None:intergenic |
| TAAGACTGTTGTGATGCTTG+AGG | 0.642521 | 1.1:+25592953 | MS.gene65443:CDS |
| TGAGGGAAATGCTATTGACA+TGG | 0.646419 | 1.1:+25591730 | MS.gene65443:CDS |
| AGTGAAGCACGTATCCTCGA+AGG | 0.649063 | 1.1:+25593172 | MS.gene65443:CDS |
| GAAATGGATATAGAGAGGGA+AGG | 0.651048 | 1.1:+25591176 | MS.gene65443:CDS |
| ACTGCATAAGGATGGAACAC+TGG | 0.651978 | 1.1:-25590960 | None:intergenic |
| TCTGCAGAAAGAGCAAGGAA+TGG | 0.655915 | 1.1:+25589682 | MS.gene65443:CDS |
| CATTCCATGGATAATAGACA+CGG | 0.656178 | 1.1:+25591098 | MS.gene65443:CDS |
| GTAATTTCCAAGCTCGTGGG+AGG | 0.656825 | 1.1:-25593934 | None:intergenic |
| TGGACTCAGAAAGTAACGGT+GGG | 0.657200 | 1.1:+25590071 | MS.gene65443:CDS |
| ATGGACTCAGAAAGTAACGG+TGG | 0.657320 | 1.1:+25590070 | MS.gene65443:CDS |
| GAAATTGTCCTAGAGCTCCG+TGG | 0.662085 | 1.1:-25592702 | None:intergenic |
| GGAACACTGGCAAAGCACCT+GGG | 0.665869 | 1.1:-25590947 | None:intergenic |
| CAAGATCAAATGGATAAGGG+TGG | 0.666245 | 1.1:+25587508 | MS.gene65443:CDS |
| AGTCCTGGAGACACGTAAGT+CGG | 0.667114 | 1.1:+25589658 | MS.gene65443:CDS |
| ACTGATAAGGAAGAAACAGA+CGG | 0.669219 | 1.1:+25591419 | MS.gene65443:CDS |
| CGTGGTTTAACTAAGGAAGT+CGG | 0.669786 | 1.1:-25592684 | None:intergenic |
| TTACCAGGGGAACTATCGAA+AGG | 0.671985 | 1.1:+25587578 | MS.gene65443:CDS |
| ACTCACCGAAAGGGTTAAGG+CGG | 0.674801 | 1.1:+25594055 | MS.gene65443:CDS |
| CATACTCAGAATTTCGTGCA+CGG | 0.675649 | 1.1:-25593903 | None:intergenic |
| GTTTACAGACTGGAGACCGA+AGG | 0.676522 | 1.1:+25591198 | MS.gene65443:CDS |
| AGACAGACGTAAATCTAGCA+CGG | 0.677192 | 1.1:+25591238 | MS.gene65443:CDS |
| CGACTTCCTTAGTTAAACCA+CGG | 0.680430 | 1.1:+25592685 | MS.gene65443:CDS |
| AGTCGGGGATCCTCCATAGG+CGG | 0.684813 | 1.1:-25591044 | None:intergenic |
| GAACCTAAGCAAGAGAAGGG+TGG | 0.688918 | 1.1:+25592588 | MS.gene65443:CDS |
| GAGAGAATGAACAGGCCAAG+GGG | 0.691412 | 1.1:-25590925 | None:intergenic |
| TACACTTGAGAAAATTCCTG+AGG | 0.691658 | 1.1:+25594008 | MS.gene65443:CDS |
| ATGCAGGCCCAAAATGTAGG+CGG | 0.696884 | 1.1:+25591878 | MS.gene65443:CDS |
| AGAATGGATGCGATGTCACG+TGG | 0.699807 | 1.1:+25587554 | MS.gene65443:CDS |
| AAATGGGCTGAGCAAACCTG+AGG | 0.708672 | 1.1:-25587464 | None:intergenic |
| GAAATGGACTCAGAAAGTAA+CGG | 0.722926 | 1.1:+25590067 | MS.gene65443:CDS |
| GATGTCACGTGGTTTACCAG+GGG | 0.735286 | 1.1:+25587565 | MS.gene65443:CDS |
| GATAAGGAAGAAACAGACGG+AGG | 0.782208 | 1.1:+25591422 | MS.gene65443:CDS |
| CAGACGTAAATCTAGCACGG+TGG | 0.815638 | 1.1:+25591241 | MS.gene65443:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 25586588 | 25594584 | 25586588 | ID=MS.gene65443 |
| chr1.1 | mRNA | 25586588 | 25594584 | 25586588 | ID=MS.gene65443.t1;Parent=MS.gene65443 |
| chr1.1 | exon | 25586588 | 25586646 | 25586588 | ID=MS.gene65443.t1.exon1;Parent=MS.gene65443.t1 |
| chr1.1 | CDS | 25586588 | 25586646 | 25586588 | ID=cds.MS.gene65443.t1;Parent=MS.gene65443.t1 |
| chr1.1 | exon | 25587420 | 25587599 | 25587420 | ID=MS.gene65443.t1.exon2;Parent=MS.gene65443.t1 |
| chr1.1 | CDS | 25587420 | 25587599 | 25587420 | ID=cds.MS.gene65443.t1;Parent=MS.gene65443.t1 |
| chr1.1 | exon | 25588171 | 25588291 | 25588171 | ID=MS.gene65443.t1.exon3;Parent=MS.gene65443.t1 |
| chr1.1 | CDS | 25588171 | 25588291 | 25588171 | ID=cds.MS.gene65443.t1;Parent=MS.gene65443.t1 |
| chr1.1 | exon | 25588371 | 25588428 | 25588371 | ID=MS.gene65443.t1.exon4;Parent=MS.gene65443.t1 |
| chr1.1 | CDS | 25588371 | 25588428 | 25588371 | ID=cds.MS.gene65443.t1;Parent=MS.gene65443.t1 |
| chr1.1 | exon | 25589089 | 25589141 | 25589089 | ID=MS.gene65443.t1.exon5;Parent=MS.gene65443.t1 |
| chr1.1 | CDS | 25589089 | 25589141 | 25589089 | ID=cds.MS.gene65443.t1;Parent=MS.gene65443.t1 |
| chr1.1 | exon | 25589220 | 25589275 | 25589220 | ID=MS.gene65443.t1.exon6;Parent=MS.gene65443.t1 |
| chr1.1 | CDS | 25589220 | 25589275 | 25589220 | ID=cds.MS.gene65443.t1;Parent=MS.gene65443.t1 |
| chr1.1 | exon | 25589643 | 25589795 | 25589643 | ID=MS.gene65443.t1.exon7;Parent=MS.gene65443.t1 |
| chr1.1 | CDS | 25589643 | 25589795 | 25589643 | ID=cds.MS.gene65443.t1;Parent=MS.gene65443.t1 |
| chr1.1 | exon | 25589940 | 25590106 | 25589940 | ID=MS.gene65443.t1.exon8;Parent=MS.gene65443.t1 |
| chr1.1 | CDS | 25589940 | 25590106 | 25589940 | ID=cds.MS.gene65443.t1;Parent=MS.gene65443.t1 |
| chr1.1 | exon | 25590880 | 25592138 | 25590880 | ID=MS.gene65443.t1.exon9;Parent=MS.gene65443.t1 |
| chr1.1 | CDS | 25590880 | 25592138 | 25590880 | ID=cds.MS.gene65443.t1;Parent=MS.gene65443.t1 |
| chr1.1 | exon | 25592249 | 25593085 | 25592249 | ID=MS.gene65443.t1.exon10;Parent=MS.gene65443.t1 |
| chr1.1 | CDS | 25592249 | 25593085 | 25592249 | ID=cds.MS.gene65443.t1;Parent=MS.gene65443.t1 |
| chr1.1 | exon | 25593161 | 25593193 | 25593161 | ID=MS.gene65443.t1.exon11;Parent=MS.gene65443.t1 |
| chr1.1 | CDS | 25593161 | 25593193 | 25593161 | ID=cds.MS.gene65443.t1;Parent=MS.gene65443.t1 |
| chr1.1 | exon | 25593793 | 25594177 | 25593793 | ID=MS.gene65443.t1.exon12;Parent=MS.gene65443.t1 |
| chr1.1 | CDS | 25593793 | 25594177 | 25593793 | ID=cds.MS.gene65443.t1;Parent=MS.gene65443.t1 |
| chr1.1 | exon | 25594352 | 25594417 | 25594352 | ID=MS.gene65443.t1.exon13;Parent=MS.gene65443.t1 |
| chr1.1 | CDS | 25594352 | 25594417 | 25594352 | ID=cds.MS.gene65443.t1;Parent=MS.gene65443.t1 |
| chr1.1 | exon | 25594514 | 25594584 | 25594514 | ID=MS.gene65443.t1.exon14;Parent=MS.gene65443.t1 |
| chr1.1 | CDS | 25594514 | 25594584 | 25594514 | ID=cds.MS.gene65443.t1;Parent=MS.gene65443.t1 |
| Gene Sequence |
| Protein sequence |
