AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene65753

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene65753.t1 MTR_3g015620 84.826 402 37 2 1 400 1 380 0.0 646
MS.gene65753.t1 MTR_3g018740 68.542 391 108 5 16 399 5 387 0.0 521
MS.gene65753.t1 MTR_3g101010 70.207 386 109 4 16 398 5 387 0.0 510
MS.gene65753.t1 MTR_8g461160 67.595 395 110 6 16 399 6 393 5.44e-176 496
MS.gene65753.t1 MTR_8g027395 64.160 399 129 6 7 398 4 395 8.82e-175 493
MS.gene65753.t1 MTR_3g101180 64.646 396 124 7 16 398 6 398 5.73e-169 478
MS.gene65753.t1 MTR_4g045707 64.249 386 130 4 16 398 6 386 4.49e-168 476
MS.gene65753.t1 MTR_7g451890 61.519 395 144 5 11 399 9 401 7.10e-168 476
MS.gene65753.t1 MTR_7g047780 61.965 397 139 6 11 399 9 401 1.89e-165 469
MS.gene65753.t1 MTR_7g050750 60.652 399 141 6 11 399 3 395 4.23e-165 469
MS.gene65753.t1 MTR_2g046030 61.381 391 136 7 16 399 5 387 1.30e-163 464
MS.gene65753.t1 MTR_7g050810 59.611 411 146 7 1 399 1 403 2.67e-163 464
MS.gene65753.t1 MTR_3g101030 62.250 400 127 8 19 398 32 427 6.64e-163 464
MS.gene65753.t1 MTR_3g101130 62.371 388 135 6 16 398 6 387 9.25e-162 460
MS.gene65753.t1 MTR_2g045980 61.637 391 135 7 16 399 5 387 8.44e-161 457
MS.gene65753.t1 MTR_3g048000 60.591 406 124 7 6 398 8 390 1.36e-160 457
MS.gene65753.t1 MTR_8g027420 62.694 386 123 6 16 398 6 373 6.89e-160 454
MS.gene65753.t1 MTR_4g088525 62.873 369 123 5 35 398 8 367 2.85e-157 447
MS.gene65753.t1 MTR_4g088535 62.141 383 119 7 16 395 7 366 1.56e-151 434
MS.gene65753.t1 MTR_3g101050 62.051 390 113 9 19 398 32 396 1.69e-146 421
MS.gene65753.t1 MTR_3g015760 77.174 276 61 2 125 400 8 281 3.80e-143 408
MS.gene65753.t1 MTR_3g102920 56.658 383 120 7 23 398 65 408 1.18e-133 389
MS.gene65753.t1 MTR_3g101190 56.011 366 88 6 38 398 13 310 2.15e-128 372
MS.gene65753.t1 MTR_3g101200 51.990 402 162 8 1 398 16 390 3.23e-120 354
MS.gene65753.t1 MTR_7g050830 54.545 330 116 4 1 308 1 318 1.31e-113 335
MS.gene65753.t1 MTR_3g100010 56.913 311 85 3 39 316 40 334 1.38e-109 325
MS.gene65753.t1 MTR_3g100995 62.205 254 91 3 147 399 14 263 1.05e-106 315
MS.gene65753.t1 MTR_3g018747 59.623 265 83 4 140 399 9 254 2.69e-99 296
MS.gene65753.t1 MTR_3g100520 59.193 223 70 5 181 398 1 207 1.99e-81 249
MS.gene65753.t1 MTR_3g114310 40.250 400 208 14 17 397 20 407 8.47e-78 246
MS.gene65753.t1 MTR_2g046410 58.571 210 75 5 197 399 144 348 7.81e-77 242
MS.gene65753.t1 MTR_3g101110 56.432 241 71 5 140 374 68 280 2.09e-75 236
MS.gene65753.t1 MTR_3g111160 59.641 223 80 6 181 398 1 218 1.29e-74 231
MS.gene65753.t1 MTR_3g099970 58.883 197 61 4 140 334 20 198 2.04e-67 212
MS.gene65753.t1 MTR_3g111150 59.887 177 47 2 18 194 1 153 8.91e-65 204
MS.gene65753.t1 MTR_3g101020 57.754 187 50 5 214 399 1 159 3.85e-61 195
MS.gene65753.t1 MTR_3g101150 64.151 159 50 4 248 400 2 159 4.07e-56 182
MS.gene65753.t1 MTR_3g102870 60.927 151 54 3 205 352 3 151 1.41e-54 178
MS.gene65753.t1 MTR_3g100990 72.000 125 35 0 16 140 5 129 5.22e-52 181
MS.gene65753.t1 MTR_4g093550 63.953 86 31 0 14 99 4 89 2.02e-27 104
MS.gene65753.t1 MTR_6g046890 58.904 73 30 0 24 96 7 79 4.85e-19 83.2
MS.gene65753.t1 MTR_3g101140 63.235 68 23 2 332 398 48 114 1.85e-17 78.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene65753.t1 AT1G47710 51.250 400 188 4 4 398 20 417 3.12e-140 406
MS.gene65753.t1 AT1G47710 51.795 390 181 4 14 398 3 390 1.20e-139 404
MS.gene65753.t1 AT2G26390 46.954 394 185 9 16 397 5 386 2.26e-116 344
MS.gene65753.t1 AT2G25240 47.692 390 184 8 16 397 5 382 9.70e-116 343
MS.gene65753.t1 AT3G45220 45.316 395 194 7 16 397 5 390 1.16e-114 340
MS.gene65753.t1 AT1G62170 43.445 389 190 6 16 397 66 431 5.92e-103 311
MS.gene65753.t1 AT2G14540 44.417 403 195 6 4 400 21 400 1.37e-100 305
MS.gene65753.t1 AT1G64030 43.990 391 190 8 14 397 3 371 1.76e-97 296
MS.gene65753.t1 AT1G62170 40.047 422 190 7 16 397 66 464 6.82e-96 295
MS.gene65753.t1 AT2G35580 42.674 389 180 10 16 397 19 371 1.04e-92 283
MS.gene65753.t1 AT1G64010 45.413 218 95 4 181 397 1 195 5.42e-58 188
MS.gene65753.t1 AT1G64010 43.842 203 90 4 196 397 2 181 7.33e-50 167
MS.gene65753.t1 AT1G62160 42.714 199 88 4 203 397 42 218 1.17e-37 136
MS.gene65753.t1 AT1G63280 56.897 116 45 3 140 253 8 120 1.61e-35 127
MS.gene65753.t1 AT1G51330 54.054 111 47 3 139 246 30 139 4.34e-30 115
MS.gene65753.t1 AT1G64020 34.821 112 70 3 21 130 10 120 4.68e-14 68.9

Find 79 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTGAAGAAGTGAATTTA+TGG 0.219042 3.2:-7881975 MS.gene65753:CDS
AATCGTATCTAATGATTATA+AGG 0.286766 3.2:-7882579 MS.gene65753:CDS
GTTGAGATGATCAGTTGATT+TGG 0.296982 3.2:+7882727 None:intergenic
TCTGGAACTGTACTCTTCAT+TGG 0.313821 3.2:-7881253 MS.gene65753:CDS
GCGAATGCACTGTACTTTAA+AGG 0.316476 3.2:-7881874 MS.gene65753:CDS
ACACCTCCAATATCTGAAAA+AGG 0.321312 3.2:+7881475 None:intergenic
TGAAACTTCTACTATGTTGA+TGG 0.346182 3.2:-7881515 MS.gene65753:CDS
AAAAGACTTGTGAAATATCT+TGG 0.368731 3.2:+7881417 None:intergenic
TCTAAAGAAATATTGAATCT+TGG 0.377492 3.2:+7881541 None:intergenic
AAGTTCAAGTTAGTGCCTTC+CGG 0.378967 3.2:-7881567 MS.gene65753:CDS
TTGTCTTCACCTTGCTCATA+AGG 0.385648 3.2:+7881703 None:intergenic
TTCTTTAGAGAAGAGATGTT+TGG 0.388693 3.2:+7882859 None:intergenic
TCTTGAAGAAGTGAATTTAT+GGG 0.391648 3.2:-7881974 MS.gene65753:CDS
AATCATTAGATACGATTTGT+TGG 0.398638 3.2:+7882585 None:intergenic
GCTTTCAAAGATGAGGAGTA+TGG 0.400025 3.2:-7881352 MS.gene65753:CDS
GCGCTCAGCATGATCGCTGC+TGG 0.406741 3.2:-7882794 MS.gene65753:CDS
AAATTGCTTCTCATAATAAC+TGG 0.413173 3.2:+7881762 None:intergenic
TTTCTTCCTGATGCAAAAGA+TGG 0.424204 3.2:-7881658 MS.gene65753:CDS
TTGATCAGAGAAGATTTGTC+TGG 0.431879 3.2:-7881271 MS.gene65753:CDS
CTCTCCAATGCTGCTCCCTC+CGG 0.438523 3.2:-7882674 MS.gene65753:CDS
ACCACCGGAGGGAGCAGCAT+TGG 0.442798 3.2:+7882670 None:intergenic
TCGAGAAGCTGTTCTCTTGT+GGG 0.445430 3.2:+7882761 None:intergenic
CCTTGCCTCTCTTTCGTCAA+CGG 0.445773 3.2:-7882647 MS.gene65753:CDS
CGATCATGCTGAGCGCAACT+TGG 0.453638 3.2:+7882801 None:intergenic
CACTCCGAAGATAGAATTTG+TGG 0.453884 3.2:-7881314 MS.gene65753:CDS
CTCATAATAACTGGTCATGA+AGG 0.454809 3.2:+7881771 None:intergenic
GAAAGAGAGGCAAGGACCAC+CGG 0.455855 3.2:+7882655 None:intergenic
GTCGAGAAGCTGTTCTCTTG+TGG 0.461285 3.2:+7882760 None:intergenic
GATACGATTTGTTGGAAGGA+AGG 0.462624 3.2:+7882593 None:intergenic
GGGAGCAGCATTGGAGAGGA+TGG 0.463006 3.2:+7882679 None:intergenic
TCTCTTTCGTCAACGGAGTG+TGG 0.470214 3.2:-7882640 MS.gene65753:CDS
TTTATTGAAGTAAATGAAGC+AGG 0.473462 3.2:-7881397 MS.gene65753:CDS
AGCGCAACTTGGAGGGAAAG+TGG 0.476968 3.2:+7882812 None:intergenic
AAATATTGAATCTTGGAATC+CGG 0.479824 3.2:+7881548 None:intergenic
CTCTTTCGTCAACGGAGTGT+GGG 0.480202 3.2:-7882639 MS.gene65753:CDS
ATGATCGCTGCTGGCTCTGA+CGG 0.486610 3.2:-7882785 MS.gene65753:CDS
TCAGCCACAAATTCTATCTT+CGG 0.492664 3.2:+7881310 None:intergenic
AACTAAGTCATCAACTGAGC+CGG 0.497028 3.2:+7881909 None:intergenic
CACTGTACTTTAAAGGAGCA+TGG 0.504436 3.2:-7881867 MS.gene65753:CDS
CTTTGATTCACTGTGAGCCA+TGG 0.505783 3.2:+7882946 None:intergenic
ATTAGATACGATTTGTTGGA+AGG 0.508632 3.2:+7882589 None:intergenic
GATCAGTTGATTTGGAGAGA+AGG 0.523363 3.2:+7882735 None:intergenic
TCATGCTGAGCGCAACTTGG+AGG 0.523467 3.2:+7882804 None:intergenic
AGAGATGTTTGGCGATTCTG+AGG 0.536626 3.2:+7882870 None:intergenic
AGAAACTAGATGAGAAGCAA+AGG 0.537564 3.2:+7882703 None:intergenic
CATGCTGAGCGCAACTTGGA+GGG 0.539990 3.2:+7882805 None:intergenic
TCCAATGCTGCTCCCTCCGG+TGG 0.541746 3.2:-7882671 MS.gene65753:CDS
ATTCACTTCTTCAAGAACTT+CGG 0.549777 3.2:+7881981 None:intergenic
ATTGTTAAGTTTGATTGAGA+AGG 0.552198 3.2:-7881635 MS.gene65753:CDS
CTTCGTCTTCCTTATGAGCA+AGG 0.564269 3.2:-7881712 MS.gene65753:CDS
GCGCAACTTGGAGGGAAAGT+GGG 0.565456 3.2:+7882813 None:intergenic
GGAAGGAAGGTTGAAGAGAA+CGG 0.567966 3.2:+7882606 None:intergenic
ACTAAGTCATCAACTGAGCC+GGG 0.569577 3.2:+7881910 None:intergenic
TCTACTATGTTGATGGAGCT+AGG 0.571611 3.2:-7881508 MS.gene65753:CDS
GTTTAAGATCACATGTCAAG+AGG 0.572224 3.2:+7881217 None:intergenic
GTCTGTTGATTTCAAGAACA+AGG 0.576796 3.2:-7882546 MS.gene65753:intron
TCTGAATGGCAACTCTGTCA+AGG 0.581715 3.2:-7881797 MS.gene65753:CDS
CGCAACTTGGAGGGAAAGTG+GGG 0.583444 3.2:+7882814 None:intergenic
TCATAATAACTGGTCATGAA+GGG 0.584803 3.2:+7881772 None:intergenic
AGAGAGGCAAGGACCACCGG+AGG 0.589977 3.2:+7882658 None:intergenic
TATCTTCGGAGTGTCGTCAC+AGG 0.592557 3.2:+7881324 None:intergenic
GGCAACTGCTTTCAAAGATG+AGG 0.600631 3.2:-7881359 MS.gene65753:CDS
TATGTTGATGGAGCTAGGAG+TGG 0.602047 3.2:-7881503 MS.gene65753:CDS
CTTGAAATCAACAGACGACA+AGG 0.603597 3.2:+7882553 None:intergenic
ACTGTACTTTAAAGGAGCAT+GGG 0.607721 3.2:-7881866 MS.gene65753:CDS
GTTTGATATTTCAGATACAG+AGG 0.613869 3.2:-7881836 MS.gene65753:CDS
CGGAGGGAGCAGCATTGGAG+AGG 0.619755 3.2:+7882675 None:intergenic
GTACTTTAAAGGAGCATGGG+AGG 0.625570 3.2:-7881863 MS.gene65753:CDS
ATTGAATCTTGGAATCCGGA+AGG 0.629746 3.2:+7881552 None:intergenic
GAGATGTTTGGCGATTCTGA+GGG 0.631667 3.2:+7882871 None:intergenic
AGCAGGTACTGAAGCTGCTG+CGG 0.638818 3.2:-7881380 MS.gene65753:CDS
ACACTCCGTTGACGAAAGAG+AGG 0.649179 3.2:+7882642 None:intergenic
GATGACTTAGTTGTGCTCAT+CGG 0.655177 3.2:-7881898 MS.gene65753:CDS
GAAATATCTTGGAAACGACA+AGG 0.665998 3.2:+7881428 None:intergenic
GAGAGGCAAGGACCACCGGA+GGG 0.686020 3.2:+7882659 None:intergenic
CTTGCTCATAAGGAAGACGA+AGG 0.700277 3.2:+7881713 None:intergenic
AAGTCATCAACTGAGCCGGG+TGG 0.701911 3.2:+7881913 None:intergenic
CCGTTGACGAAAGAGAGGCA+AGG 0.732143 3.2:+7882647 None:intergenic
GAAATCAACAGACGACAAGG+TGG 0.734878 3.2:+7882556 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTCTTGCTAATTAATTAA+AGG - chr3.2:7881695-7881714 MS.gene65753:CDS 15.0%
!! CAGTAATATAAAACTATAAA+AGG + chr3.2:7881975-7881994 None:intergenic 15.0%
!!! AATTGCTTTTATTAAACTAT+CGG + chr3.2:7881919-7881938 None:intergenic 15.0%
!!! CTAGTATTTCTTTTATTAAA+AGG + chr3.2:7881847-7881866 None:intergenic 15.0%
!!! TGTATTTTATATGGTTTTAA+AGG - chr3.2:7882162-7882181 MS.gene65753:intron 15.0%
!! AAATATGTTGCTAAATAAGT+TGG + chr3.2:7882128-7882147 None:intergenic 20.0%
!! AATCGTATCTAATGATTATA+AGG - chr3.2:7881590-7881609 MS.gene65753:CDS 20.0%
!! ATAAAACTAATCATTTGTGA+AGG + chr3.2:7881726-7881745 None:intergenic 20.0%
!! TCTAAAGAAATATTGAATCT+TGG + chr3.2:7882631-7882650 None:intergenic 20.0%
!!! ACTGGTTTTTGTATTTTATA+TGG - chr3.2:7882153-7882172 MS.gene65753:intron 20.0%
! AAAAGACTTGTGAAATATCT+TGG + chr3.2:7882755-7882774 None:intergenic 25.0%
! AAATATTGAATCTTGGAATC+CGG + chr3.2:7882624-7882643 None:intergenic 25.0%
! AAATTGCTTCTCATAATAAC+TGG + chr3.2:7882410-7882429 None:intergenic 25.0%
! AAGATCTTAAGACTTATTAC+AGG + chr3.2:7881813-7881832 None:intergenic 25.0%
! AATCATTAGATACGATTTGT+TGG + chr3.2:7881587-7881606 None:intergenic 25.0%
! AATTAGCAAGAAATCAAAGT+AGG + chr3.2:7881689-7881708 None:intergenic 25.0%
! ATTAGCAAGAAATCAAAGTA+GGG + chr3.2:7881688-7881707 None:intergenic 25.0%
! ATTGTTAAGTTTGATTGAGA+AGG - chr3.2:7882534-7882553 MS.gene65753:intron 25.0%
! GTAATAAGTCTTAAGATCTT+GGG - chr3.2:7881813-7881832 MS.gene65753:CDS 25.0%
! GTGTTGTAAAAACTCAAATT+CGG + chr3.2:7882566-7882585 None:intergenic 25.0%
! TCTTGAAGAAGTGAATTTAT+GGG - chr3.2:7882195-7882214 MS.gene65753:intron 25.0%
! TGTAATAAGTCTTAAGATCT+TGG - chr3.2:7881812-7881831 MS.gene65753:CDS 25.0%
! TTCTTGAAGAAGTGAATTTA+TGG - chr3.2:7882194-7882213 MS.gene65753:intron 25.0%
! TTTATTGAAGTAAATGAAGC+AGG - chr3.2:7882772-7882791 MS.gene65753:CDS 25.0%
!! AAGTATCATTCTTTTCTCTT+TGG + chr3.2:7881250-7881269 None:intergenic 25.0%
!! AGTATCATTCTTTTCTCTTT+GGG + chr3.2:7881249-7881268 None:intergenic 25.0%
!!! AAAAGGCATTTGAATAACAA+AGG + chr3.2:7881958-7881977 None:intergenic 25.0%
!!! AGTTTTATGAAAGCAATTGA+CGG - chr3.2:7882068-7882087 MS.gene65753:intron 25.0%
!!! CAATTTATCAGTGTTTTTGA+TGG - chr3.2:7882424-7882443 MS.gene65753:intron 25.0%
!!! GTTTTACCTTTTTCAGATAT+TGG - chr3.2:7882688-7882707 MS.gene65753:CDS 25.0%
AAAGCAATTCTATGTATGTG+AGG - chr3.2:7881930-7881949 MS.gene65753:CDS 30.0%
ATAAAAAATCTACTTCCACC+CGG - chr3.2:7882241-7882260 MS.gene65753:intron 30.0%
ATTCACTTCTTCAAGAACTT+CGG + chr3.2:7882191-7882210 None:intergenic 30.0%
CTCTGATCAAAAACAAGAAA+GGG + chr3.2:7882888-7882907 None:intergenic 30.0%
GTTTGATATTTCAGATACAG+AGG - chr3.2:7882333-7882352 MS.gene65753:intron 30.0%
TAGCAACATATTTGCATAAC+TGG - chr3.2:7882135-7882154 MS.gene65753:intron 30.0%
TCATAATAACTGGTCATGAA+GGG + chr3.2:7882400-7882419 None:intergenic 30.0%
TCTCTGATCAAAAACAAGAA+AGG + chr3.2:7882889-7882908 None:intergenic 30.0%
TGAAACTTCTACTATGTTGA+TGG - chr3.2:7882654-7882673 MS.gene65753:CDS 30.0%
! TGTGATTTTCACATTCTGAA+TGG - chr3.2:7882358-7882377 MS.gene65753:intron 30.0%
! TTCTTTAGAGAAGAGATGTT+TGG + chr3.2:7881313-7881332 None:intergenic 30.0%
!! ATTAGATACGATTTGTTGGA+AGG + chr3.2:7881583-7881602 None:intergenic 30.0%
!!! TTACCTTTTTCAGATATTGG+AGG - chr3.2:7882691-7882710 MS.gene65753:CDS 30.0%
ACACCTCCAATATCTGAAAA+AGG + chr3.2:7882697-7882716 None:intergenic 35.0%
AGAAACTAGATGAGAAGCAA+AGG + chr3.2:7881469-7881488 None:intergenic 35.0%
AGTTGAATAGTTGTATGCCA+AGG + chr3.2:7882021-7882040 None:intergenic 35.0%
CTCATAATAACTGGTCATGA+AGG + chr3.2:7882401-7882420 None:intergenic 35.0%
GAAATATCTTGGAAACGACA+AGG + chr3.2:7882744-7882763 None:intergenic 35.0%
GTTGAATAGTTGTATGCCAA+GGG + chr3.2:7882020-7882039 None:intergenic 35.0%
GTTGAGATGATCAGTTGATT+TGG + chr3.2:7881445-7881464 None:intergenic 35.0%
TCAGCCACAAATTCTATCTT+CGG + chr3.2:7882862-7882881 None:intergenic 35.0%
TTGATCAGAGAAGATTTGTC+TGG - chr3.2:7882898-7882917 MS.gene65753:CDS 35.0%
TTTCTTCCTGATGCAAAAGA+TGG - chr3.2:7882511-7882530 MS.gene65753:intron 35.0%
! AACAATCCATCTTTTGCATC+AGG + chr3.2:7882520-7882539 None:intergenic 35.0%
! ACTGTACTTTAAAGGAGCAT+GGG - chr3.2:7882303-7882322 MS.gene65753:intron 35.0%
!! GTCTGTTGATTTCAAGAACA+AGG - chr3.2:7881623-7881642 MS.gene65753:CDS 35.0%
!! TTCTGAGGGAAACTTTTGTT+TGG + chr3.2:7881287-7881306 None:intergenic 35.0%
!! TTTTTCAGATATTGGAGGTG+TGG - chr3.2:7882696-7882715 MS.gene65753:CDS 35.0%
AACTAAGTCATCAACTGAGC+CGG + chr3.2:7882263-7882282 None:intergenic 40.0%
ATAGTTGTATGCCAAGGGAT+CGG + chr3.2:7882015-7882034 None:intergenic 40.0%
ATTGAATCTTGGAATCCGGA+AGG + chr3.2:7882620-7882639 None:intergenic 40.0%
CAAGAAATCAAAGTAGGGCA+TGG + chr3.2:7881683-7881702 None:intergenic 40.0%
CACTCCGAAGATAGAATTTG+TGG - chr3.2:7882855-7882874 MS.gene65753:CDS 40.0%
CTTGAAATCAACAGACGACA+AGG + chr3.2:7881619-7881638 None:intergenic 40.0%
GATGACTTAGTTGTGCTCAT+CGG - chr3.2:7882271-7882290 MS.gene65753:intron 40.0%
GCGAATGCACTGTACTTTAA+AGG - chr3.2:7882295-7882314 MS.gene65753:intron 40.0%
GCTTTCAAAGATGAGGAGTA+TGG - chr3.2:7882817-7882836 MS.gene65753:CDS 40.0%
TGGGCTGAAAAAGAGACAAA+TGG - chr3.2:7882214-7882233 MS.gene65753:intron 40.0%
TTGTCTTCACCTTGCTCATA+AGG + chr3.2:7882469-7882488 None:intergenic 40.0%
! AAGTTCAAGTTAGTGCCTTC+CGG - chr3.2:7882602-7882621 MS.gene65753:CDS 40.0%
! ATGGATTGCTATGAAAAGGG+GGG + chr3.2:7881664-7881683 None:intergenic 40.0%
! CACTGTACTTTAAAGGAGCA+TGG - chr3.2:7882302-7882321 MS.gene65753:intron 40.0%
! CATGGATTGCTATGAAAAGG+GGG + chr3.2:7881665-7881684 None:intergenic 40.0%
! CTAACTTGAACTTTTCGACG+AGG + chr3.2:7882595-7882614 None:intergenic 40.0%
! GCATGGATTGCTATGAAAAG+GGG + chr3.2:7881666-7881685 None:intergenic 40.0%
! GGCATGGATTGCTATGAAAA+GGG + chr3.2:7881667-7881686 None:intergenic 40.0%
! TATTGGAGGTGTGGCAAAAA+CGG - chr3.2:7882705-7882724 MS.gene65753:CDS 40.0%
! TCTACTATGTTGATGGAGCT+AGG - chr3.2:7882661-7882680 MS.gene65753:CDS 40.0%
! TCTGGAACTGTACTCTTCAT+TGG - chr3.2:7882916-7882935 MS.gene65753:CDS 40.0%
!! GATACGATTTGTTGGAAGGA+AGG + chr3.2:7881579-7881598 None:intergenic 40.0%
!! GATCAGTTGATTTGGAGAGA+AGG + chr3.2:7881437-7881456 None:intergenic 40.0%
ACTAAGTCATCAACTGAGCC+GGG + chr3.2:7882262-7882281 None:intergenic 45.0%
AGAGATGTTTGGCGATTCTG+AGG + chr3.2:7881302-7881321 None:intergenic 45.0%
AGTAAAATTCGCCGATCCCT+TGG - chr3.2:7882001-7882020 MS.gene65753:intron 45.0%
CTTCGTCTTCCTTATGAGCA+AGG - chr3.2:7882457-7882476 MS.gene65753:intron 45.0%
CTTGCTCATAAGGAAGACGA+AGG + chr3.2:7882459-7882478 None:intergenic 45.0%
GAAATCAACAGACGACAAGG+TGG + chr3.2:7881616-7881635 None:intergenic 45.0%
GAGATGTTTGGCGATTCTGA+GGG + chr3.2:7881301-7881320 None:intergenic 45.0%
GGAAGGAAGGTTGAAGAGAA+CGG + chr3.2:7881566-7881585 None:intergenic 45.0%
GGCAACTGCTTTCAAAGATG+AGG - chr3.2:7882810-7882829 MS.gene65753:CDS 45.0%
TCGAGAAGCTGTTCTCTTGT+GGG + chr3.2:7881411-7881430 None:intergenic 45.0%
TCTGAATGGCAACTCTGTCA+AGG - chr3.2:7882372-7882391 MS.gene65753:intron 45.0%
TGGATTGCTATGAAAAGGGG+GGG + chr3.2:7881663-7881682 None:intergenic 45.0%
! GGGCATGGATTGCTATGAAA+AGG + chr3.2:7881668-7881687 None:intergenic 45.0%
! GTACTTTAAAGGAGCATGGG+AGG - chr3.2:7882306-7882325 MS.gene65753:intron 45.0%
! TATGTTGATGGAGCTAGGAG+TGG - chr3.2:7882666-7882685 MS.gene65753:CDS 45.0%
ACACTCCGTTGACGAAAGAG+AGG + chr3.2:7881530-7881549 None:intergenic 50.0%
CCTTGCCTCTCTTTCGTCAA+CGG - chr3.2:7881522-7881541 MS.gene65753:CDS 50.0%
CTCTTTCGTCAACGGAGTGT+GGG - chr3.2:7881530-7881549 MS.gene65753:CDS 50.0%
GTCGAGAAGCTGTTCTCTTG+TGG + chr3.2:7881412-7881431 None:intergenic 50.0%
TCTCTTTCGTCAACGGAGTG+TGG - chr3.2:7881529-7881548 MS.gene65753:CDS 50.0%
!! TATCTTCGGAGTGTCGTCAC+AGG + chr3.2:7882848-7882867 None:intergenic 50.0%
AAGTCATCAACTGAGCCGGG+TGG + chr3.2:7882259-7882278 None:intergenic 55.0%
AGCGCAACTTGGAGGGAAAG+TGG + chr3.2:7881360-7881379 None:intergenic 55.0%
CATGCTGAGCGCAACTTGGA+GGG + chr3.2:7881367-7881386 None:intergenic 55.0%
CCGTTGACGAAAGAGAGGCA+AGG + chr3.2:7881525-7881544 None:intergenic 55.0%
CGATCATGCTGAGCGCAACT+TGG + chr3.2:7881371-7881390 None:intergenic 55.0%
CGCAACTTGGAGGGAAAGTG+GGG + chr3.2:7881358-7881377 None:intergenic 55.0%
GAAAGAGAGGCAAGGACCAC+CGG + chr3.2:7881517-7881536 None:intergenic 55.0%
GCGCAACTTGGAGGGAAAGT+GGG + chr3.2:7881359-7881378 None:intergenic 55.0%
TCATGCTGAGCGCAACTTGG+AGG + chr3.2:7881368-7881387 None:intergenic 55.0%
! TGGAGGTGTGGCAAAAACGG+TGG - chr3.2:7882708-7882727 MS.gene65753:CDS 55.0%
!! AGCAGGTACTGAAGCTGCTG+CGG - chr3.2:7882789-7882808 MS.gene65753:CDS 55.0%
!! ATGATCGCTGCTGGCTCTGA+CGG - chr3.2:7881384-7881403 MS.gene65753:CDS 55.0%
CTCTCCAATGCTGCTCCCTC+CGG - chr3.2:7881495-7881514 MS.gene65753:CDS 60.0%
GGTGTGGCAAAAACGGTGGC+TGG - chr3.2:7882712-7882731 MS.gene65753:CDS 60.0%
! GGGAGCAGCATTGGAGAGGA+TGG + chr3.2:7881493-7881512 None:intergenic 60.0%
ACCACCGGAGGGAGCAGCAT+TGG + chr3.2:7881502-7881521 None:intergenic 65.0%
AGAGAGGCAAGGACCACCGG+AGG + chr3.2:7881514-7881533 None:intergenic 65.0%
GAGAGGCAAGGACCACCGGA+GGG + chr3.2:7881513-7881532 None:intergenic 65.0%
GCGCTCAGCATGATCGCTGC+TGG - chr3.2:7881375-7881394 MS.gene65753:CDS 65.0%
TCCAATGCTGCTCCCTCCGG+TGG - chr3.2:7881498-7881517 MS.gene65753:CDS 65.0%
! CGGAGGGAGCAGCATTGGAG+AGG + chr3.2:7881497-7881516 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 7881225 7882966 7881225 ID=MS.gene65753
chr3.2 mRNA 7881225 7882966 7881225 ID=MS.gene65753.t1;Parent=MS.gene65753
chr3.2 exon 7882547 7882966 7882547 ID=MS.gene65753.t1.exon1;Parent=MS.gene65753.t1
chr3.2 CDS 7882547 7882966 7882547 ID=cds.MS.gene65753.t1;Parent=MS.gene65753.t1
chr3.2 exon 7881225 7882007 7881225 ID=MS.gene65753.t1.exon2;Parent=MS.gene65753.t1
chr3.2 CDS 7881225 7882007 7881225 ID=cds.MS.gene65753.t1;Parent=MS.gene65753.t1
Gene Sequence

>MS.gene65753

ATGGCTCACAGTGAATCAAAGCCCAAAGAGAAAAGAATGATACTTGAATCAATCAGTAACCAAACAAAAGTTTCCCTCAGAATCGCCAAACATCTCTTCTCTAAAGAATCAGAGAAGAACATTGTGTTTTCCCCACTTTCCCTCCAAGTTGCGCTCAGCATGATCGCTGCTGGCTCTGACGGACCCACAAGAGAACAGCTTCTCGACTTCCTTCTCTCCAAATCAACTGATCATCTCAACTCCTTTGCTTCTCATCTAGTTTCTTCCATCCTCTCCAATGCTGCTCCCTCCGGTGGTCCTTGCCTCTCTTTCGTCAACGGAGTGTGGGTTGATCAAAGCCGTTCTCTTCAACCTTCCTTCCAACAAATCGTATCTAATGATTATAAGGCCACCTTGTCGTCTGTTGATTTCAAGAACAAGGTATGTATTTTATATCCCCCCCTTTTCATAGCAATCCATGCCCTACTTTGATTTCTTGCTAATTAATTAAAGGTTCTACCTTCACAAATGATTAGTTTTATTTTTATTTTGTTTCAACTAATTTAGAGCAAATGTTAATTTACATTTGAAGAATATAATAACATTCCTGTAATAAGTCTTAAGATCTTGGGAATTGTCTCCTTTTAATAAAAGAAATACTAGTTGTTTATTTCATCACAAAGTAGAGTTATAGATATAATTGCTTTATATTCCGATAGTTTAATAAAAGCAATTCTATGTATGTGAGGAACCTTTGTTATTCAAATGCCTTTTATAGTTTTATATTACTGATGAGAAGTAAAATTCGCCGATCCCTTGGCATACAACTATTCAACTAGAATGATTTTAGAGCATCAAATATTAAGTTTTATGAAAGCAATTGACGGATACAACATTTTTTAACTTTTTGTCTTCTAGCATCCAACTTATTTAGCAACATATTTGCATAACTGGTTTTTGTATTTTATATGGTTTTAAAGGCTACCGAAGTTCTTGAAGAAGTGAATTTATGGGCTGAAAAAGAGACAAATGGTTTGATAAAAAATCTACTTCCACCCGGCTCAGTTGATGACTTAGTTGTGCTCATCGGTGCGAATGCACTGTACTTTAAAGGAGCATGGGAGGAGCAGTTTGATATTTCAGATACAGAGGACTGTGATTTTCACATTCTGAATGGCAACTCTGTCAAGGTTCCCTTCATGACCAGTTATTATGAGAAGCAATTTATCAGTGTTTTTGATGGTTTTAAGATCCTTCGTCTTCCTTATGAGCAAGGTGAAGACAAACGTCAATTCTCTTTTTACATTTTTCTTCCTGATGCAAAAGATGGATTGTTAAGTTTGATTGAGAAGGTAGCTTCCGAATTTGAGTTTTTACAACACAAGCTTCCTCGTCGAAAAGTTCAAGTTAGTGCCTTCCGGATTCCAAGATTCAATATTTCTTTAGAACTTGAAACTTCTACTATGTTGATGGAGCTAGGAGTGGTTTTACCTTTTTCAGATATTGGAGGTGTGGCAAAAACGGTGGCTGGTGAAAGCCTTGTCGTTTCCAAGATATTTCACAAGTCTTTTATTGAAGTAAATGAAGCAGGTACTGAAGCTGCTGCGGCAACTGCTTTCAAAGATGAGGAGTATGGTTGTTCCTGTGACGACACTCCGAAGATAGAATTTGTGGCTGATCACCCTTTCTTGTTTTTGATCAGAGAAGATTTGTCTGGAACTGTACTCTTCATTGGACAAGTTCTCAATCCTCTTGACATGTGA
Protein sequence

>MS.gene65753.t1

MAHSESKPKEKRMILESISNQTKVSLRIAKHLFSKESEKNIVFSPLSLQVALSMIAAGSDGPTREQLLDFLLSKSTDHLNSFASHLVSSILSNAAPSGGPCLSFVNGVWVDQSRSLQPSFQQIVSNDYKATLSSVDFKNKATEVLEEVNLWAEKETNGLIKNLLPPGSVDDLVVLIGANALYFKGAWEEQFDISDTEDCDFHILNGNSVKVPFMTSYYEKQFISVFDGFKILRLPYEQGEDKRQFSFYIFLPDAKDGLLSLIEKVASEFEFLQHKLPRRKVQVSAFRIPRFNISLELETSTMLMELGVVLPFSDIGGVAKTVAGESLVVSKIFHKSFIEVNEAGTEAAAATAFKDEEYGCSCDDTPKIEFVADHPFLFLIREDLSGTVLFIGQVLNPLDM