AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene65756

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene65756.t1 MTR_3g015620 84.080 402 40 2 1 400 1 380 0.0 638
MS.gene65756.t1 MTR_3g018740 68.462 390 108 5 16 398 5 386 0.0 518
MS.gene65756.t1 MTR_3g101010 70.466 386 108 4 16 398 5 387 0.0 510
MS.gene65756.t1 MTR_8g461160 67.766 394 109 6 16 398 6 392 1.97e-176 497
MS.gene65756.t1 MTR_8g027395 64.250 400 129 6 7 399 4 396 9.83e-175 493
MS.gene65756.t1 MTR_3g101180 64.484 397 125 7 16 399 6 399 8.01e-170 481
MS.gene65756.t1 MTR_4g045707 64.249 386 130 4 16 398 6 386 5.46e-168 476
MS.gene65756.t1 MTR_7g451890 60.750 400 144 6 10 398 3 400 6.82e-167 473
MS.gene65756.t1 MTR_7g047780 61.869 396 139 6 11 398 9 400 1.68e-164 467
MS.gene65756.t1 MTR_7g050750 60.302 398 142 6 11 398 3 394 5.10e-164 466
MS.gene65756.t1 MTR_7g050810 59.512 410 146 7 1 398 1 402 4.27e-163 464
MS.gene65756.t1 MTR_3g101030 62.250 400 127 8 19 398 32 427 4.43e-163 465
MS.gene65756.t1 MTR_3g101130 62.725 389 134 6 16 399 6 388 7.83e-163 462
MS.gene65756.t1 MTR_3g048000 60.934 407 123 7 6 399 8 391 1.13e-162 462
MS.gene65756.t1 MTR_8g027420 62.791 387 123 6 16 399 6 374 1.06e-159 454
MS.gene65756.t1 MTR_2g046030 60.769 390 138 7 16 398 5 386 7.35e-159 452
MS.gene65756.t1 MTR_2g045980 61.282 390 136 7 16 398 5 386 1.24e-157 449
MS.gene65756.t1 MTR_4g088525 62.703 370 124 5 35 399 8 368 3.18e-157 447
MS.gene65756.t1 MTR_4g088535 60.982 387 125 7 16 399 7 370 4.54e-150 430
MS.gene65756.t1 MTR_3g101050 62.308 390 112 9 19 398 32 396 4.04e-147 423
MS.gene65756.t1 MTR_3g015760 76.449 276 63 2 125 400 8 281 1.88e-141 404
MS.gene65756.t1 MTR_3g102920 56.250 384 122 7 23 399 65 409 2.04e-132 386
MS.gene65756.t1 MTR_3g101190 56.557 366 86 6 39 399 14 311 2.59e-130 377
MS.gene65756.t1 MTR_3g101200 51.861 403 163 8 1 399 16 391 2.28e-121 357
MS.gene65756.t1 MTR_7g050830 54.545 330 116 4 1 308 1 318 1.38e-114 337
MS.gene65756.t1 MTR_3g100010 57.235 311 84 3 39 316 40 334 2.14e-111 330
MS.gene65756.t1 MTR_3g100995 62.451 253 90 3 147 398 14 262 4.12e-107 316
MS.gene65756.t1 MTR_3g018747 59.848 264 82 4 140 398 9 253 5.62e-100 298
MS.gene65756.t1 MTR_3g100520 59.375 224 70 5 181 399 1 208 1.01e-81 249
MS.gene65756.t1 MTR_3g114310 40.250 400 208 14 17 397 20 407 1.08e-78 249
MS.gene65756.t1 MTR_3g111160 60.090 223 79 6 181 398 1 218 7.10e-76 235
MS.gene65756.t1 MTR_3g101110 56.432 241 71 5 140 374 68 280 1.05e-75 237
MS.gene65756.t1 MTR_2g046410 57.895 209 76 5 197 398 144 347 5.97e-74 234
MS.gene65756.t1 MTR_3g099970 59.391 197 60 4 140 334 20 198 8.83e-69 216
MS.gene65756.t1 MTR_3g111150 59.322 177 48 2 18 194 1 153 3.47e-64 203
MS.gene65756.t1 MTR_3g101020 57.527 186 50 5 214 398 1 158 1.36e-60 193
MS.gene65756.t1 MTR_3g101150 65.409 159 48 4 248 400 2 159 6.45e-58 186
MS.gene65756.t1 MTR_3g102870 60.927 151 54 3 205 352 3 151 1.04e-54 179
MS.gene65756.t1 MTR_3g100990 72.000 125 35 0 16 140 5 129 2.69e-51 179
MS.gene65756.t1 MTR_4g093550 62.791 86 32 0 14 99 4 89 3.08e-26 101
MS.gene65756.t1 MTR_6g046890 58.904 73 30 0 24 96 7 79 1.84e-18 81.6
MS.gene65756.t1 MTR_3g101140 63.235 68 23 2 332 398 48 114 1.80e-17 78.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene65756.t1 AT1G47710 51.000 400 189 4 4 398 20 417 5.30e-139 403
MS.gene65756.t1 AT1G47710 51.538 390 182 4 14 398 3 390 2.22e-138 400
MS.gene65756.t1 AT2G26390 46.954 394 185 9 16 397 5 386 6.07e-117 346
MS.gene65756.t1 AT3G45220 45.823 395 192 7 16 397 5 390 1.31e-116 345
MS.gene65756.t1 AT2G25240 47.692 390 184 8 16 397 5 382 5.82e-116 343
MS.gene65756.t1 AT1G62170 43.445 389 190 6 16 397 66 431 1.05e-102 311
MS.gene65756.t1 AT2G14540 45.000 400 191 6 4 397 21 397 4.50e-101 306
MS.gene65756.t1 AT1G64030 43.990 391 190 8 14 397 3 371 7.57e-98 297
MS.gene65756.t1 AT1G62170 40.047 422 190 7 16 397 66 464 1.27e-95 294
MS.gene65756.t1 AT2G35580 42.674 389 180 10 16 397 19 371 1.40e-92 283
MS.gene65756.t1 AT1G64010 45.872 218 94 4 181 397 1 195 6.00e-59 191
MS.gene65756.t1 AT1G64010 44.335 203 89 4 196 397 2 181 8.14e-51 169
MS.gene65756.t1 AT1G62160 42.714 199 88 4 203 397 42 218 4.48e-38 137
MS.gene65756.t1 AT1G63280 56.897 116 45 3 140 253 8 120 2.33e-35 126
MS.gene65756.t1 AT1G51330 54.054 111 47 3 139 246 30 139 6.76e-30 114
MS.gene65756.t1 AT1G64020 35.714 112 69 3 21 130 10 120 1.55e-14 70.1

Find 79 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTTGAAGAAGTGAATTTA+TGG 0.232229 3.2:-7910958 MS.gene65756:CDS
AATCGTATCTAATGATTATA+AGG 0.286766 3.2:-7911567 MS.gene65756:CDS
GTTGAGATGATCAGTTGATT+TGG 0.296982 3.2:+7911715 None:intergenic
CCTTGCCTCTCTTTCGTCAA+TGG 0.302081 3.2:-7911635 MS.gene65756:CDS
TCTGGAACTGTACTCTTCAT+TGG 0.313821 3.2:-7910236 MS.gene65756:CDS
GCGAATGCACTGTACTTTAA+AGG 0.316476 3.2:-7910857 MS.gene65756:CDS
ACACCTCCAATATCTGAAAA+AGG 0.321312 3.2:+7910458 None:intergenic
AAAAGACTTGTGAAATATCT+TGG 0.368731 3.2:+7910400 None:intergenic
TCTAAAGAAATATTGAATCT+TGG 0.377492 3.2:+7910524 None:intergenic
AAGTTCAAGTTAGTGCCTTC+CGG 0.382959 3.2:-7910550 MS.gene65756:CDS
TTGTCTTCACCTTGCTCATA+AGG 0.385648 3.2:+7910686 None:intergenic
AATCATTAGATACGATTTGT+TGG 0.398638 3.2:+7911573 None:intergenic
GCTTTCAAAGATGAGGAGTA+TGG 0.400025 3.2:-7910335 MS.gene65756:CDS
GCGCTCAGCATGATCGCTGC+TGG 0.406741 3.2:-7911782 MS.gene65756:CDS
TTCTTTAGAGAAGAGATGTT+TGG 0.407263 3.2:+7911847 None:intergenic
AAATTGCTTCTCATAATAAC+TGG 0.413173 3.2:+7910745 None:intergenic
TTTCTTCCTGATGCAAAAGA+TGG 0.424204 3.2:-7910641 MS.gene65756:CDS
CTCTTTCGTCAATGGAGTGT+GGG 0.427737 3.2:-7911627 MS.gene65756:CDS
TTGATCAGAGAAGATTTGTC+TGG 0.431879 3.2:-7910254 MS.gene65756:CDS
CTCTCCAATGCTGCTCCCTC+CGG 0.438523 3.2:-7911662 MS.gene65756:CDS
ACCACCGGAGGGAGCAGCAT+TGG 0.442798 3.2:+7911658 None:intergenic
CGATCATGCTGAGCGCAACT+TGG 0.453638 3.2:+7911789 None:intergenic
CACTCCGAAGATAGAATTTG+TGG 0.453884 3.2:-7910297 MS.gene65756:CDS
CTCATAATAACTGGTCATGA+AGG 0.454809 3.2:+7910754 None:intergenic
GAAAGAGAGGCAAGGACCAC+CGG 0.455855 3.2:+7911643 None:intergenic
GATACGATTTGTTGGAAGGA+AGG 0.462624 3.2:+7911581 None:intergenic
GGGAGCAGCATTGGAGAGGA+TGG 0.463006 3.2:+7911667 None:intergenic
TAGAGAAGCTGTTCTCTTGT+GGG 0.469498 3.2:+7911749 None:intergenic
TTTATTGAAGTAAATGAAGC+AGG 0.473462 3.2:-7910380 MS.gene65756:CDS
AGCGCAACTTGGAGGGAAAG+TGG 0.476968 3.2:+7911800 None:intergenic
AAATATTGAATCTTGGAATC+CGG 0.479824 3.2:+7910531 None:intergenic
GCTTGAAGAAGTGAATTTAT+GGG 0.483467 3.2:-7910957 MS.gene65756:CDS
ATGATCGCTGCTGGCTCTGA+TGG 0.489509 3.2:-7911773 MS.gene65756:CDS
TCAGCCACAAATTCTATCTT+CGG 0.492664 3.2:+7910293 None:intergenic
AACTAAGTCATCAACTGAGC+CGG 0.497028 3.2:+7910892 None:intergenic
CACTGTACTTTAAAGGAGCA+TGG 0.504436 3.2:-7910850 MS.gene65756:CDS
TCTCTTTCGTCAATGGAGTG+TGG 0.505142 3.2:-7911628 MS.gene65756:CDS
CTTTGATTCACTGTGAGCCA+TGG 0.505783 3.2:+7911934 None:intergenic
ATTAGATACGATTTGTTGGA+AGG 0.508632 3.2:+7911577 None:intergenic
GATGACTTAGTTGTGCTCAT+TGG 0.517098 3.2:-7910881 MS.gene65756:CDS
GATCAGTTGATTTGGAGAGA+AGG 0.523363 3.2:+7911723 None:intergenic
TCATGCTGAGCGCAACTTGG+AGG 0.523467 3.2:+7911792 None:intergenic
AGAGATGTTTGGCGATTCTG+AGG 0.536626 3.2:+7911858 None:intergenic
AGAAACTAGATGAGAAGCAA+AGG 0.537564 3.2:+7911691 None:intergenic
GTAGAGAAGCTGTTCTCTTG+TGG 0.537906 3.2:+7911748 None:intergenic
CATGCTGAGCGCAACTTGGA+GGG 0.539990 3.2:+7911793 None:intergenic
TCTACTATGCTGATGGAGCT+AGG 0.541284 3.2:-7910491 MS.gene65756:CDS
TCCAATGCTGCTCCCTCCGG+TGG 0.541746 3.2:-7911659 MS.gene65756:CDS
ATTGTTAAGTTTGATTGAGA+AGG 0.552198 3.2:-7910618 MS.gene65756:CDS
TGAAACTTCTACTATGCTGA+TGG 0.560759 3.2:-7910498 MS.gene65756:CDS
CTTCGTCTTCCTTATGAGCA+AGG 0.564269 3.2:-7910695 MS.gene65756:CDS
GCGCAACTTGGAGGGAAAGT+GGG 0.565456 3.2:+7911801 None:intergenic
GGAAGGAAGGTTGAAGAGAA+CGG 0.567966 3.2:+7911594 None:intergenic
ACTAAGTCATCAACTGAGCC+GGG 0.569577 3.2:+7910893 None:intergenic
GTCTGTTGATTTCAAGAACA+AGG 0.576796 3.2:-7911534 MS.gene65756:intron
TCTGAATGGCAACTCTGTCA+AGG 0.581715 3.2:-7910780 MS.gene65756:CDS
CGCAACTTGGAGGGAAAGTG+GGG 0.583444 3.2:+7911802 None:intergenic
TCATAATAACTGGTCATGAA+GGG 0.584803 3.2:+7910755 None:intergenic
AGAGAGGCAAGGACCACCGG+AGG 0.589977 3.2:+7911646 None:intergenic
TATCTTCGGAGTGTCGTCAC+AGG 0.592557 3.2:+7910307 None:intergenic
GGCAACTGCTTTCAAAGATG+AGG 0.600631 3.2:-7910342 MS.gene65756:CDS
CTTGAAATCAACAGACGACA+AGG 0.603597 3.2:+7911541 None:intergenic
ACTGTACTTTAAAGGAGCAT+GGG 0.607721 3.2:-7910849 MS.gene65756:CDS
ATTCACTTCTTCAAGCACTT+CGG 0.609522 3.2:+7910964 None:intergenic
GTTTGATATTTCAGATACAG+AGG 0.613869 3.2:-7910819 MS.gene65756:CDS
AGTTAAGATTACATGACAAG+AGG 0.614011 3.2:+7910200 None:intergenic
CGGAGGGAGCAGCATTGGAG+AGG 0.619755 3.2:+7911663 None:intergenic
GTACTTTAAAGGAGCATGGG+AGG 0.625570 3.2:-7910846 MS.gene65756:CDS
ATTGAATCTTGGAATCCGGA+AGG 0.629746 3.2:+7910535 None:intergenic
GAGATGTTTGGCGATTCTGA+GGG 0.631667 3.2:+7911859 None:intergenic
AGCAGGTACTGAAGCTGCTG+CGG 0.638818 3.2:-7910363 MS.gene65756:CDS
TATGCTGATGGAGCTAGGAG+TGG 0.644969 3.2:-7910486 MS.gene65756:CDS
ACACTCCATTGACGAAAGAG+AGG 0.648769 3.2:+7911630 None:intergenic
GAAATATCTTGGAAACGACA+AGG 0.665998 3.2:+7910411 None:intergenic
GAGAGGCAAGGACCACCGGA+GGG 0.686020 3.2:+7911647 None:intergenic
CTTGCTCATAAGGAAGACGA+AGG 0.700277 3.2:+7910696 None:intergenic
AAGTCATCAACTGAGCCGGG+TGG 0.701911 3.2:+7910896 None:intergenic
CCATTGACGAAAGAGAGGCA+AGG 0.731733 3.2:+7911635 None:intergenic
GAAATCAACAGACGACAAGG+TGG 0.734878 3.2:+7911544 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTCTTGCTAATTAATTAA+AGG - chr3.2:7910678-7910697 MS.gene65756:CDS 15.0%
!! CAGTAATATAAAACTATAAA+AGG + chr3.2:7910963-7910982 None:intergenic 15.0%
!!! CTAGTATTTCTTTTATTAAA+AGG + chr3.2:7910830-7910849 None:intergenic 15.0%
!!! TGTATTTTATATGGTTTTAA+AGG - chr3.2:7911150-7911169 MS.gene65756:intron 15.0%
!! AAATATGTTGCTAAATAAGT+TGG + chr3.2:7911116-7911135 None:intergenic 20.0%
!! AATCGTATCTAATGATTATA+AGG - chr3.2:7910573-7910592 MS.gene65756:CDS 20.0%
!! ATAAAACTAATCATTTGTGA+AGG + chr3.2:7910709-7910728 None:intergenic 20.0%
!! TCTAAAGAAATATTGAATCT+TGG + chr3.2:7911619-7911638 None:intergenic 20.0%
!!! ACTGGTTTTTGTATTTTATA+TGG - chr3.2:7911141-7911160 MS.gene65756:intron 20.0%
! AAAAGACTTGTGAAATATCT+TGG + chr3.2:7911743-7911762 None:intergenic 25.0%
! AAATATTGAATCTTGGAATC+CGG + chr3.2:7911612-7911631 None:intergenic 25.0%
! AAATTGCTTCTCATAATAAC+TGG + chr3.2:7911398-7911417 None:intergenic 25.0%
! AAGATCTTAAGACTTATTAC+AGG + chr3.2:7910796-7910815 None:intergenic 25.0%
! AATCATTAGATACGATTTGT+TGG + chr3.2:7910570-7910589 None:intergenic 25.0%
! AATTAGCAAGAAATCAAAGT+AGG + chr3.2:7910672-7910691 None:intergenic 25.0%
! ATTAGCAAGAAATCAAAGTA+GGG + chr3.2:7910671-7910690 None:intergenic 25.0%
! ATTGTTAAGTTTGATTGAGA+AGG - chr3.2:7911522-7911541 MS.gene65756:intron 25.0%
! GTAATAAGTCTTAAGATCTT+GGG - chr3.2:7910796-7910815 MS.gene65756:CDS 25.0%
! GTGTTGTAAAAACTCAAATT+CGG + chr3.2:7911554-7911573 None:intergenic 25.0%
! TGTAATAAGTCTTAAGATCT+TGG - chr3.2:7910795-7910814 MS.gene65756:CDS 25.0%
! TTTATTGAAGTAAATGAAGC+AGG - chr3.2:7911760-7911779 MS.gene65756:CDS 25.0%
!! AAGTATCATTCTTTTCTCTT+TGG + chr3.2:7910233-7910252 None:intergenic 25.0%
!! AGTATCATTCTTTTCTCTTT+GGG + chr3.2:7910232-7910251 None:intergenic 25.0%
!! TATGATTTTCACATTCTGAA+TGG - chr3.2:7911346-7911365 MS.gene65756:intron 25.0%
!!! AAAAGGCATTTGAATAACAA+AGG + chr3.2:7910946-7910965 None:intergenic 25.0%
!!! AGTTTTATGAAAGCAATTGA+CGG - chr3.2:7911056-7911075 MS.gene65756:intron 25.0%
!!! CAATTTATCAGTGTTTTTGA+TGG - chr3.2:7911412-7911431 MS.gene65756:intron 25.0%
!!! GTTTTACCTTTTTCAGATAT+TGG - chr3.2:7911676-7911695 MS.gene65756:CDS 25.0%
AAAGCAATTCTATGTATGTG+AGG - chr3.2:7910918-7910937 MS.gene65756:CDS 30.0%
ATAAAAAATCTACTTCCACC+CGG - chr3.2:7911229-7911248 MS.gene65756:intron 30.0%
CTCTGATCAAAAACAAGAAA+GGG + chr3.2:7911876-7911895 None:intergenic 30.0%
GCTTGAAGAAGTGAATTTAT+GGG - chr3.2:7911183-7911202 MS.gene65756:intron 30.0%
GTTTGATATTTCAGATACAG+AGG - chr3.2:7911321-7911340 MS.gene65756:intron 30.0%
TAGCAACATATTTGCATAAC+TGG - chr3.2:7911123-7911142 MS.gene65756:intron 30.0%
TCATAATAACTGGTCATGAA+GGG + chr3.2:7911388-7911407 None:intergenic 30.0%
TCTCTGATCAAAAACAAGAA+AGG + chr3.2:7911877-7911896 None:intergenic 30.0%
TGCTTGAAGAAGTGAATTTA+TGG - chr3.2:7911182-7911201 MS.gene65756:intron 30.0%
! TTCTTTAGAGAAGAGATGTT+TGG + chr3.2:7910296-7910315 None:intergenic 30.0%
!! ATTAGATACGATTTGTTGGA+AGG + chr3.2:7910566-7910585 None:intergenic 30.0%
!! CTTTCATCAAGTTGAACTAT+CGG + chr3.2:7910902-7910921 None:intergenic 30.0%
!!! TTACCTTTTTCAGATATTGG+AGG - chr3.2:7911679-7911698 MS.gene65756:CDS 30.0%
ACACCTCCAATATCTGAAAA+AGG + chr3.2:7911685-7911704 None:intergenic 35.0%
AGAAACTAGATGAGAAGCAA+AGG + chr3.2:7910452-7910471 None:intergenic 35.0%
AGTTGAATAGTTGTATGCCA+AGG + chr3.2:7911009-7911028 None:intergenic 35.0%
ATTCACTTCTTCAAGCACTT+CGG + chr3.2:7911179-7911198 None:intergenic 35.0%
CTCATAATAACTGGTCATGA+AGG + chr3.2:7911389-7911408 None:intergenic 35.0%
GAAATATCTTGGAAACGACA+AGG + chr3.2:7911732-7911751 None:intergenic 35.0%
GTTGAATAGTTGTATGCCAA+GGG + chr3.2:7911008-7911027 None:intergenic 35.0%
GTTGAGATGATCAGTTGATT+TGG + chr3.2:7910428-7910447 None:intergenic 35.0%
TCAGCCACAAATTCTATCTT+CGG + chr3.2:7911850-7911869 None:intergenic 35.0%
TGAAACTTCTACTATGCTGA+TGG - chr3.2:7911642-7911661 MS.gene65756:CDS 35.0%
TTGATCAGAGAAGATTTGTC+TGG - chr3.2:7911886-7911905 MS.gene65756:CDS 35.0%
TTTCTTCCTGATGCAAAAGA+TGG - chr3.2:7911499-7911518 MS.gene65756:intron 35.0%
! AACAATCCATCTTTTGCATC+AGG + chr3.2:7911508-7911527 None:intergenic 35.0%
! ACTGTACTTTAAAGGAGCAT+GGG - chr3.2:7911291-7911310 MS.gene65756:intron 35.0%
! ATGGATTGCTATGAAAAGAG+GGG + chr3.2:7910647-7910666 None:intergenic 35.0%
! CATGGATTGCTATGAAAAGA+GGG + chr3.2:7910648-7910667 None:intergenic 35.0%
! CTAACTTGAACTTTTTGACG+AGG + chr3.2:7911583-7911602 None:intergenic 35.0%
!! GTCTGTTGATTTCAAGAACA+AGG - chr3.2:7910606-7910625 MS.gene65756:CDS 35.0%
!! TTCTGAGGGAAACTTTTGTT+TGG + chr3.2:7910270-7910289 None:intergenic 35.0%
!! TTTTTCAGATATTGGAGGTG+TGG - chr3.2:7911684-7911703 MS.gene65756:CDS 35.0%
AACTAAGTCATCAACTGAGC+CGG + chr3.2:7911251-7911270 None:intergenic 40.0%
ATAGTTGTATGCCAAGGGAT+CGG + chr3.2:7911003-7911022 None:intergenic 40.0%
ATTGAATCTTGGAATCCGGA+AGG + chr3.2:7911608-7911627 None:intergenic 40.0%
CAAGAAATCAAAGTAGGGCA+TGG + chr3.2:7910666-7910685 None:intergenic 40.0%
CACTCCGAAGATAGAATTTG+TGG - chr3.2:7911843-7911862 MS.gene65756:CDS 40.0%
CTTGAAATCAACAGACGACA+AGG + chr3.2:7910602-7910621 None:intergenic 40.0%
GATGACTTAGTTGTGCTCAT+TGG - chr3.2:7911259-7911278 MS.gene65756:intron 40.0%
GCGAATGCACTGTACTTTAA+AGG - chr3.2:7911283-7911302 MS.gene65756:intron 40.0%
GCTTTCAAAGATGAGGAGTA+TGG - chr3.2:7911805-7911824 MS.gene65756:CDS 40.0%
TAGAGAAGCTGTTCTCTTGT+GGG + chr3.2:7910394-7910413 None:intergenic 40.0%
TGGATTGCTATGAAAAGAGG+GGG + chr3.2:7910646-7910665 None:intergenic 40.0%
TGGGCTGAAAAAGAGACAAA+TGG - chr3.2:7911202-7911221 MS.gene65756:intron 40.0%
TTGTCTTCACCTTGCTCATA+AGG + chr3.2:7911457-7911476 None:intergenic 40.0%
! AAGTTCAAGTTAGTGCCTTC+CGG - chr3.2:7911590-7911609 MS.gene65756:CDS 40.0%
! CACTGTACTTTAAAGGAGCA+TGG - chr3.2:7911290-7911309 MS.gene65756:intron 40.0%
! GCATGGATTGCTATGAAAAG+AGG + chr3.2:7910649-7910668 None:intergenic 40.0%
! TATTGGAGGTGTGGCAAAAA+CGG - chr3.2:7911693-7911712 MS.gene65756:CDS 40.0%
! TCTGGAACTGTACTCTTCAT+TGG - chr3.2:7911904-7911923 MS.gene65756:CDS 40.0%
!! GATACGATTTGTTGGAAGGA+AGG + chr3.2:7910562-7910581 None:intergenic 40.0%
!! GATCAGTTGATTTGGAGAGA+AGG + chr3.2:7910420-7910439 None:intergenic 40.0%
ACACTCCATTGACGAAAGAG+AGG + chr3.2:7910513-7910532 None:intergenic 45.0%
ACTAAGTCATCAACTGAGCC+GGG + chr3.2:7911250-7911269 None:intergenic 45.0%
AGAGATGTTTGGCGATTCTG+AGG + chr3.2:7910285-7910304 None:intergenic 45.0%
AGTAAAATTCGCCGATCCCT+TGG - chr3.2:7910989-7911008 MS.gene65756:intron 45.0%
CTCTTTCGTCAATGGAGTGT+GGG - chr3.2:7910513-7910532 MS.gene65756:CDS 45.0%
CTTCGTCTTCCTTATGAGCA+AGG - chr3.2:7911445-7911464 MS.gene65756:intron 45.0%
CTTGCTCATAAGGAAGACGA+AGG + chr3.2:7911447-7911466 None:intergenic 45.0%
GAAATCAACAGACGACAAGG+TGG + chr3.2:7910599-7910618 None:intergenic 45.0%
GAGATGTTTGGCGATTCTGA+GGG + chr3.2:7910284-7910303 None:intergenic 45.0%
GGAAGGAAGGTTGAAGAGAA+CGG + chr3.2:7910549-7910568 None:intergenic 45.0%
GGCAACTGCTTTCAAAGATG+AGG - chr3.2:7911798-7911817 MS.gene65756:CDS 45.0%
GTAGAGAAGCTGTTCTCTTG+TGG + chr3.2:7910395-7910414 None:intergenic 45.0%
TCTACTATGCTGATGGAGCT+AGG - chr3.2:7911649-7911668 MS.gene65756:CDS 45.0%
TCTCTTTCGTCAATGGAGTG+TGG - chr3.2:7910512-7910531 MS.gene65756:CDS 45.0%
TCTGAATGGCAACTCTGTCA+AGG - chr3.2:7911360-7911379 MS.gene65756:intron 45.0%
! GTACTTTAAAGGAGCATGGG+AGG - chr3.2:7911294-7911313 MS.gene65756:intron 45.0%
CCATTGACGAAAGAGAGGCA+AGG + chr3.2:7910508-7910527 None:intergenic 50.0%
CCTTGCCTCTCTTTCGTCAA+TGG - chr3.2:7910505-7910524 MS.gene65756:CDS 50.0%
TATGCTGATGGAGCTAGGAG+TGG - chr3.2:7911654-7911673 MS.gene65756:CDS 50.0%
!! TATCTTCGGAGTGTCGTCAC+AGG + chr3.2:7911836-7911855 None:intergenic 50.0%
AAGTCATCAACTGAGCCGGG+TGG + chr3.2:7911247-7911266 None:intergenic 55.0%
AGCGCAACTTGGAGGGAAAG+TGG + chr3.2:7910343-7910362 None:intergenic 55.0%
CATGCTGAGCGCAACTTGGA+GGG + chr3.2:7910350-7910369 None:intergenic 55.0%
CGATCATGCTGAGCGCAACT+TGG + chr3.2:7910354-7910373 None:intergenic 55.0%
CGCAACTTGGAGGGAAAGTG+GGG + chr3.2:7910341-7910360 None:intergenic 55.0%
GAAAGAGAGGCAAGGACCAC+CGG + chr3.2:7910500-7910519 None:intergenic 55.0%
GCGCAACTTGGAGGGAAAGT+GGG + chr3.2:7910342-7910361 None:intergenic 55.0%
TCATGCTGAGCGCAACTTGG+AGG + chr3.2:7910351-7910370 None:intergenic 55.0%
! TGGAGGTGTGGCAAAAACGG+TGG - chr3.2:7911696-7911715 MS.gene65756:CDS 55.0%
!! AGCAGGTACTGAAGCTGCTG+CGG - chr3.2:7911777-7911796 MS.gene65756:CDS 55.0%
!! ATGATCGCTGCTGGCTCTGA+TGG - chr3.2:7910367-7910386 MS.gene65756:CDS 55.0%
CTCTCCAATGCTGCTCCCTC+CGG - chr3.2:7910478-7910497 MS.gene65756:CDS 60.0%
GGTGTGGCAAAAACGGTGGC+TGG - chr3.2:7911700-7911719 MS.gene65756:CDS 60.0%
! GGGAGCAGCATTGGAGAGGA+TGG + chr3.2:7910476-7910495 None:intergenic 60.0%
ACCACCGGAGGGAGCAGCAT+TGG + chr3.2:7910485-7910504 None:intergenic 65.0%
AGAGAGGCAAGGACCACCGG+AGG + chr3.2:7910497-7910516 None:intergenic 65.0%
GAGAGGCAAGGACCACCGGA+GGG + chr3.2:7910496-7910515 None:intergenic 65.0%
GCGCTCAGCATGATCGCTGC+TGG - chr3.2:7910358-7910377 MS.gene65756:CDS 65.0%
TCCAATGCTGCTCCCTCCGG+TGG - chr3.2:7910481-7910500 MS.gene65756:CDS 65.0%
! CGGAGGGAGCAGCATTGGAG+AGG + chr3.2:7910480-7910499 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 7910208 7911954 7910208 ID=MS.gene65756
chr3.2 mRNA 7910208 7911954 7910208 ID=MS.gene65756.t1;Parent=MS.gene65756
chr3.2 exon 7911535 7911954 7911535 ID=MS.gene65756.t1.exon1;Parent=MS.gene65756.t1
chr3.2 CDS 7911535 7911954 7911535 ID=cds.MS.gene65756.t1;Parent=MS.gene65756.t1
chr3.2 exon 7910208 7910990 7910208 ID=MS.gene65756.t1.exon2;Parent=MS.gene65756.t1
chr3.2 CDS 7910208 7910990 7910208 ID=cds.MS.gene65756.t1;Parent=MS.gene65756.t1
Gene Sequence

>MS.gene65756

ATGGCTCACAGTGAATCAAAGCCCAAAGAGAAAAGAATGATACTTGAATCAATCAGTAACCAAACAAAAGTTTCCCTCAGAATCGCCAAACATCTCTTCTCTAAAGAATCAAAGAAGAACATTGTGTTTTCCCCACTTTCCCTCCAAGTTGCGCTCAGCATGATCGCTGCTGGCTCTGATGGACCCACAAGAGAACAGCTTCTCTACTTCCTTCTCTCCAAATCAACTGATCATCTCAACTCCTTTGCTTCTCATCTAGTTTCTTCCATCCTCTCCAATGCTGCTCCCTCCGGTGGTCCTTGCCTCTCTTTCGTCAATGGAGTGTGGGTTGATCAAAGCCGTTCTCTTCAACCTTCCTTCCAACAAATCGTATCTAATGATTATAAGGCCACCTTGTCGTCTGTTGATTTCAAGAACAAGGTATGTATTTTATATCCCCCTCTTTTCATAGCAATCCATGCCCTACTTTGATTTCTTGCTAATTAATTAAAGGTTCTACCTTCACAAATGATTAGTTTTATTTTTATTTTGTTTCAACTAATTTAGAGCAAATGTTAATTTACATTTGAAGAATATAATAACATTCCTGTAATAAGTCTTAAGATCTTGGGAATTGTCTCCTTTTAATAAAAGAAATACTAGTTGTTTATTTCATCACAAAGTAGAGTTATAGTTATAATTGCTTTATATTCCGATAGTTCAACTTGATGAAAGCAATTCTATGTATGTGAGGAACCTTTGTTATTCAAATGCCTTTTATAGTTTTATATTACTGATGAGAAGTAAAATTCGCCGATCCCTTGGCATACAACTATTCAACTAGAATGATTTTAGAGCATCAAATATCAAGTTTTATGAAAGCAATTGACGGATACAACATTCTTTAACTTTTTGTCTTCTAGCATCCAACTTATTTAGCAACATATTTGCATAACTGGTTTTTGTATTTTATATGGTTTTAAAGGCTACCGAAGTGCTTGAAGAAGTGAATTTATGGGCTGAAAAAGAGACAAATGGTTTGATAAAAAATCTACTTCCACCCGGCTCAGTTGATGACTTAGTTGTGCTCATTGGTGCGAATGCACTGTACTTTAAAGGAGCATGGGAGGAGCAGTTTGATATTTCAGATACAGAGGACTATGATTTTCACATTCTGAATGGCAACTCTGTCAAGGTTCCCTTCATGACCAGTTATTATGAGAAGCAATTTATCAGTGTTTTTGATGGTTTTAAGATCCTTCGTCTTCCTTATGAGCAAGGTGAAGACAAACGTCAATTCTCTTTTTACATTTTTCTTCCTGATGCAAAAGATGGATTGTTAAGTTTGATTGAGAAGGTAGCTTCCGAATTTGAGTTTTTACAACACAAGCTTCCTCGTCAAAAAGTTCAAGTTAGTGCCTTCCGGATTCCAAGATTCAATATTTCTTTAGAACTTGAAACTTCTACTATGCTGATGGAGCTAGGAGTGGTTTTACCTTTTTCAGATATTGGAGGTGTGGCAAAAACGGTGGCTGGTGAAAGCCTTGTCGTTTCCAAGATATTTCACAAGTCTTTTATTGAAGTAAATGAAGCAGGTACTGAAGCTGCTGCGGCAACTGCTTTCAAAGATGAGGAGTATGGTTGTTCCTGTGACGACACTCCGAAGATAGAATTTGTGGCTGATCACCCTTTCTTGTTTTTGATCAGAGAAGATTTGTCTGGAACTGTACTCTTCATTGGACAAGTTCTCAATCCTCTTGTCATGTAA
Protein sequence

>MS.gene65756.t1

MAHSESKPKEKRMILESISNQTKVSLRIAKHLFSKESKKNIVFSPLSLQVALSMIAAGSDGPTREQLLYFLLSKSTDHLNSFASHLVSSILSNAAPSGGPCLSFVNGVWVDQSRSLQPSFQQIVSNDYKATLSSVDFKNKATEVLEEVNLWAEKETNGLIKNLLPPGSVDDLVVLIGANALYFKGAWEEQFDISDTEDYDFHILNGNSVKVPFMTSYYEKQFISVFDGFKILRLPYEQGEDKRQFSFYIFLPDAKDGLLSLIEKVASEFEFLQHKLPRQKVQVSAFRIPRFNISLELETSTMLMELGVVLPFSDIGGVAKTVAGESLVVSKIFHKSFIEVNEAGTEAAAATAFKDEEYGCSCDDTPKIEFVADHPFLFLIREDLSGTVLFIGQVLNPLVM