Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65760.t1 | AES68818.1 | 81.5 | 401 | 51 | 2 | 1 | 399 | 1 | 380 | 3.30E-176 | 627.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65760.t1 | Q9S7T8 | 51.2 | 389 | 184 | 3 | 14 | 397 | 3 | 390 | 3.2e-111 | 403.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65760.t1 | G7IVY4 | 81.5 | 401 | 51 | 2 | 1 | 399 | 1 | 380 | 2.4e-176 | 627.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene65760 | MS.gene045585 | PPI |
| MS.gene65760 | MS.gene065944 | PPI |
| MS.gene006610 | MS.gene65760 | PPI |
| MS.gene065945 | MS.gene65760 | PPI |
| MS.gene031697 | MS.gene65760 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65760.t1 | MTR_3g015620 | 81.546 | 401 | 51 | 2 | 1 | 399 | 1 | 380 | 0.0 | 619 |
| MS.gene65760.t1 | MTR_3g018740 | 67.609 | 389 | 118 | 3 | 14 | 398 | 3 | 387 | 0.0 | 523 |
| MS.gene65760.t1 | MTR_3g101010 | 65.553 | 389 | 125 | 4 | 14 | 397 | 3 | 387 | 8.97e-180 | 505 |
| MS.gene65760.t1 | MTR_8g461160 | 66.497 | 394 | 115 | 5 | 16 | 398 | 6 | 393 | 4.29e-177 | 499 |
| MS.gene65760.t1 | MTR_4g045707 | 64.767 | 386 | 129 | 3 | 15 | 397 | 5 | 386 | 5.25e-177 | 498 |
| MS.gene65760.t1 | MTR_8g027395 | 62.907 | 399 | 137 | 5 | 4 | 397 | 3 | 395 | 4.31e-172 | 486 |
| MS.gene65760.t1 | MTR_7g451890 | 60.149 | 404 | 152 | 5 | 1 | 398 | 1 | 401 | 4.49e-170 | 481 |
| MS.gene65760.t1 | MTR_7g050750 | 60.660 | 394 | 148 | 4 | 11 | 398 | 3 | 395 | 1.06e-167 | 475 |
| MS.gene65760.t1 | MTR_3g101030 | 62.155 | 399 | 124 | 7 | 21 | 397 | 34 | 427 | 3.06e-167 | 475 |
| MS.gene65760.t1 | MTR_3g101180 | 63.291 | 395 | 130 | 6 | 16 | 397 | 6 | 398 | 4.47e-166 | 471 |
| MS.gene65760.t1 | MTR_7g047780 | 60.149 | 404 | 152 | 5 | 1 | 398 | 1 | 401 | 9.44e-166 | 470 |
| MS.gene65760.t1 | MTR_3g048000 | 61.139 | 404 | 122 | 7 | 7 | 397 | 9 | 390 | 1.01e-165 | 470 |
| MS.gene65760.t1 | MTR_7g050810 | 58.168 | 404 | 162 | 4 | 1 | 398 | 1 | 403 | 2.91e-161 | 459 |
| MS.gene65760.t1 | MTR_8g027420 | 61.299 | 385 | 129 | 4 | 16 | 397 | 6 | 373 | 2.99e-160 | 455 |
| MS.gene65760.t1 | MTR_3g101130 | 60.519 | 385 | 148 | 3 | 15 | 397 | 5 | 387 | 1.28e-158 | 452 |
| MS.gene65760.t1 | MTR_4g088525 | 61.475 | 366 | 132 | 3 | 35 | 397 | 8 | 367 | 2.57e-158 | 450 |
| MS.gene65760.t1 | MTR_2g045980 | 59.288 | 393 | 144 | 6 | 14 | 398 | 3 | 387 | 8.36e-158 | 450 |
| MS.gene65760.t1 | MTR_2g046030 | 58.779 | 393 | 146 | 6 | 14 | 398 | 3 | 387 | 4.35e-157 | 448 |
| MS.gene65760.t1 | MTR_3g015760 | 81.091 | 275 | 51 | 1 | 125 | 399 | 8 | 281 | 2.65e-153 | 434 |
| MS.gene65760.t1 | MTR_4g088535 | 58.915 | 387 | 124 | 6 | 16 | 394 | 7 | 366 | 9.81e-150 | 429 |
| MS.gene65760.t1 | MTR_3g101050 | 61.558 | 385 | 120 | 9 | 20 | 397 | 33 | 396 | 2.60e-144 | 416 |
| MS.gene65760.t1 | MTR_3g102920 | 54.712 | 382 | 128 | 6 | 23 | 397 | 65 | 408 | 2.31e-131 | 383 |
| MS.gene65760.t1 | MTR_3g101190 | 54.545 | 363 | 97 | 5 | 38 | 397 | 13 | 310 | 2.27e-128 | 372 |
| MS.gene65760.t1 | MTR_3g101200 | 52.897 | 397 | 159 | 5 | 6 | 397 | 17 | 390 | 8.48e-126 | 369 |
| MS.gene65760.t1 | MTR_7g050830 | 52.584 | 329 | 123 | 3 | 1 | 307 | 1 | 318 | 1.23e-111 | 330 |
| MS.gene65760.t1 | MTR_3g100995 | 62.846 | 253 | 90 | 3 | 147 | 398 | 14 | 263 | 3.45e-109 | 322 |
| MS.gene65760.t1 | MTR_3g100010 | 54.545 | 308 | 92 | 2 | 41 | 315 | 42 | 334 | 4.22e-106 | 317 |
| MS.gene65760.t1 | MTR_3g018747 | 61.217 | 263 | 81 | 4 | 140 | 398 | 9 | 254 | 4.20e-102 | 303 |
| MS.gene65760.t1 | MTR_3g100520 | 59.009 | 222 | 71 | 4 | 181 | 397 | 1 | 207 | 9.92e-85 | 257 |
| MS.gene65760.t1 | MTR_3g111160 | 60.090 | 223 | 78 | 5 | 181 | 397 | 1 | 218 | 5.23e-80 | 245 |
| MS.gene65760.t1 | MTR_3g101110 | 56.667 | 240 | 71 | 4 | 140 | 373 | 68 | 280 | 1.96e-78 | 244 |
| MS.gene65760.t1 | MTR_3g114310 | 38.287 | 397 | 217 | 12 | 18 | 396 | 21 | 407 | 1.64e-74 | 238 |
| MS.gene65760.t1 | MTR_2g046410 | 57.619 | 210 | 76 | 5 | 197 | 398 | 144 | 348 | 5.98e-74 | 234 |
| MS.gene65760.t1 | MTR_3g099970 | 60.714 | 196 | 58 | 3 | 140 | 333 | 20 | 198 | 8.33e-73 | 226 |
| MS.gene65760.t1 | MTR_3g111150 | 58.757 | 177 | 49 | 2 | 18 | 194 | 1 | 153 | 6.37e-64 | 202 |
| MS.gene65760.t1 | MTR_3g101020 | 55.676 | 185 | 56 | 3 | 214 | 398 | 1 | 159 | 2.22e-60 | 193 |
| MS.gene65760.t1 | MTR_3g101150 | 66.038 | 159 | 47 | 3 | 247 | 399 | 2 | 159 | 5.02e-60 | 192 |
| MS.gene65760.t1 | MTR_3g102870 | 60.000 | 150 | 56 | 2 | 205 | 351 | 3 | 151 | 1.65e-56 | 183 |
| MS.gene65760.t1 | MTR_3g100990 | 67.460 | 126 | 41 | 0 | 15 | 140 | 4 | 129 | 4.18e-49 | 174 |
| MS.gene65760.t1 | MTR_4g093550 | 61.628 | 86 | 33 | 0 | 14 | 99 | 4 | 89 | 4.31e-27 | 103 |
| MS.gene65760.t1 | MTR_6g046890 | 53.425 | 73 | 34 | 0 | 24 | 96 | 7 | 79 | 7.98e-17 | 77.0 |
| MS.gene65760.t1 | MTR_3g101140 | 59.701 | 67 | 27 | 0 | 331 | 397 | 48 | 114 | 3.01e-16 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65760.t1 | AT1G47710 | 51.157 | 389 | 184 | 3 | 14 | 397 | 3 | 390 | 3.97e-141 | 407 |
| MS.gene65760.t1 | AT1G47710 | 51.020 | 392 | 186 | 3 | 11 | 397 | 27 | 417 | 1.55e-140 | 407 |
| MS.gene65760.t1 | AT2G26390 | 46.173 | 392 | 190 | 7 | 16 | 396 | 5 | 386 | 4.18e-117 | 346 |
| MS.gene65760.t1 | AT2G25240 | 46.907 | 388 | 189 | 7 | 16 | 396 | 5 | 382 | 3.72e-116 | 343 |
| MS.gene65760.t1 | AT3G45220 | 44.162 | 394 | 199 | 6 | 16 | 396 | 5 | 390 | 2.46e-115 | 342 |
| MS.gene65760.t1 | AT1G62170 | 42.821 | 390 | 194 | 5 | 14 | 396 | 64 | 431 | 9.74e-102 | 308 |
| MS.gene65760.t1 | AT1G64030 | 44.330 | 388 | 192 | 6 | 14 | 396 | 3 | 371 | 3.69e-101 | 305 |
| MS.gene65760.t1 | AT2G14540 | 44.332 | 397 | 193 | 5 | 9 | 399 | 26 | 400 | 4.61e-100 | 303 |
| MS.gene65760.t1 | AT1G62170 | 39.480 | 423 | 194 | 6 | 14 | 396 | 64 | 464 | 1.37e-94 | 291 |
| MS.gene65760.t1 | AT2G35580 | 41.795 | 390 | 185 | 9 | 14 | 396 | 17 | 371 | 1.07e-91 | 281 |
| MS.gene65760.t1 | AT1G64010 | 47.465 | 217 | 91 | 5 | 181 | 396 | 1 | 195 | 5.34e-62 | 198 |
| MS.gene65760.t1 | AT1G64010 | 46.040 | 202 | 86 | 5 | 196 | 396 | 2 | 181 | 7.68e-54 | 177 |
| MS.gene65760.t1 | AT1G63280 | 56.522 | 115 | 46 | 2 | 140 | 252 | 8 | 120 | 1.60e-37 | 132 |
| MS.gene65760.t1 | AT1G62160 | 40.704 | 199 | 91 | 4 | 203 | 396 | 42 | 218 | 9.09e-34 | 125 |
| MS.gene65760.t1 | AT1G51330 | 51.818 | 110 | 50 | 1 | 139 | 245 | 30 | 139 | 2.55e-30 | 115 |
| MS.gene65760.t1 | AT1G64020 | 36.607 | 112 | 68 | 3 | 21 | 130 | 10 | 120 | 1.07e-14 | 70.5 |
Find 79 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGCCTCTCTTTCGTTAA+TGG | 0.112187 | 3.2:-8019197 | MS.gene65760:CDS |
| TCTGGAACTGTACTCTTTAT+TGG | 0.170477 | 3.2:-8017790 | MS.gene65760:CDS |
| CACTTAAAGAAGTGAATTTA+TGG | 0.204091 | 3.2:-8018509 | MS.gene65760:CDS |
| GTTGAGATAATCAGTTGATT+TGG | 0.284891 | 3.2:+8019277 | None:intergenic |
| AATCGTATCTAATGATTATA+AGG | 0.286766 | 3.2:-8019129 | MS.gene65760:CDS |
| GCAAATGCACTGTACTTTAA+AGG | 0.300798 | 3.2:-8018408 | MS.gene65760:CDS |
| CGGCAACTGCTTTCATAGAT+AGG | 0.310491 | 3.2:-8017897 | MS.gene65760:CDS |
| CAGTTTATCGGTGTTCTTGA+TGG | 0.322417 | 3.2:-8018282 | MS.gene65760:CDS |
| CTCTTTCGTTAATGGATTGT+GGG | 0.326951 | 3.2:-8019189 | MS.gene65760:CDS |
| ACACCTCCAATATCGGAAAA+AGG | 0.340024 | 3.2:+8018012 | None:intergenic |
| AAGTTGAAGTTGGTGCCTTC+CGG | 0.378213 | 3.2:-8018104 | MS.gene65760:CDS |
| TCAAAAGAAATATTGAATCT+TGG | 0.379974 | 3.2:+8018078 | None:intergenic |
| GAAGGAAGGTTGAAGAGAAC+GGG | 0.391847 | 3.2:+8019157 | None:intergenic |
| GTGTTGTAAAATCTCAAATT+CGG | 0.396256 | 3.2:+8018143 | None:intergenic |
| AATCATTAGATACGATTTGT+TGG | 0.398638 | 3.2:+8019135 | None:intergenic |
| TATCTTCGGAGTGTCGTCTA+AGG | 0.407181 | 3.2:+8017861 | None:intergenic |
| TTTCTTCCTGATGCAAAAGA+TGG | 0.410392 | 3.2:-8018195 | MS.gene65760:CDS |
| ACTTAAAGAAGTGAATTTAT+GGG | 0.413845 | 3.2:-8018508 | MS.gene65760:CDS |
| AGTTACGAGGAGCAGTTTAT+CGG | 0.420403 | 3.2:-8018294 | MS.gene65760:CDS |
| TCTCTTTCGTTAATGGATTG+TGG | 0.422341 | 3.2:-8019190 | MS.gene65760:CDS |
| ATTCACTTCTTTAAGTGCTT+CGG | 0.433646 | 3.2:+8018515 | None:intergenic |
| CTCTCCAATGCTGCTCCCTC+CGG | 0.438523 | 3.2:-8019224 | MS.gene65760:CDS |
| ACCACCGGAGGGAGCAGCAT+TGG | 0.442798 | 3.2:+8019220 | None:intergenic |
| TCGAGAAGCTGTTCTCTTGT+GGG | 0.445430 | 3.2:+8019311 | None:intergenic |
| TTGATCAGAGACGATCTGTC+TGG | 0.453137 | 3.2:-8017808 | MS.gene65760:CDS |
| CACTCCGAAGATAGAATTTG+TGG | 0.453884 | 3.2:-8017851 | MS.gene65760:CDS |
| GTCGAGAAGCTGTTCTCTTG+TGG | 0.461285 | 3.2:+8019310 | None:intergenic |
| GATACGATTTGTTGGAAGGA+AGG | 0.462624 | 3.2:+8019143 | None:intergenic |
| GGCAACTGCTTTCATAGATA+GGG | 0.467172 | 3.2:-8017896 | MS.gene65760:CDS |
| GAAAGAGAGGCAAGGACCAC+CGG | 0.470223 | 3.2:+8019205 | None:intergenic |
| GGAAGGAAGGTTGAAGAGAA+CGG | 0.472759 | 3.2:+8019156 | None:intergenic |
| TTTATTGAAGTAAATGAAGC+AGG | 0.473462 | 3.2:-8017934 | MS.gene65760:CDS |
| AAATATTGAATCTTGGAATC+CGG | 0.479824 | 3.2:+8018085 | None:intergenic |
| GGGAGCAGCATTGGAGAGGA+TGG | 0.479850 | 3.2:+8019229 | None:intergenic |
| TCAGCCACAAATTCTATCTT+CGG | 0.492664 | 3.2:+8017847 | None:intergenic |
| CTTCGTCTTCCCTTTGAGCA+AGG | 0.496990 | 3.2:-8018249 | MS.gene65760:CDS |
| TCTGTTTGGACTTTAATTCA+CGG | 0.497445 | 3.2:+8019486 | None:intergenic |
| CACTGTACTTTAAAGGAGCA+TGG | 0.504436 | 3.2:-8018401 | MS.gene65760:CDS |
| AATCAGTTGATTTGGAGAGA+AGG | 0.505930 | 3.2:+8019285 | None:intergenic |
| GCGCTCAGCATGATCACTGC+TGG | 0.506791 | 3.2:-8019344 | MS.gene65760:CDS |
| ATTAGATACGATTTGTTGGA+AGG | 0.508632 | 3.2:+8019139 | None:intergenic |
| TCTAATATGCTGAAGGAGCT+AGG | 0.508650 | 3.2:-8018045 | MS.gene65760:CDS |
| ATGATCACTGCTGGCTCTGA+CGG | 0.525801 | 3.2:-8019335 | MS.gene65760:CDS |
| CTTTAATTCACGGTCAGCCA+TGG | 0.526500 | 3.2:+8019496 | None:intergenic |
| CTCCTCGTAACTTCTCATGA+AGG | 0.540111 | 3.2:+8018305 | None:intergenic |
| CCTAGTCGAAAAGTTGAAGT+TGG | 0.540256 | 3.2:-8018114 | MS.gene65760:CDS |
| TCCAATGCTGCTCCCTCCGG+TGG | 0.541746 | 3.2:-8019221 | MS.gene65760:CDS |
| ATAGATGTTTGGCGATTCTG+AGG | 0.549851 | 3.2:+8019420 | None:intergenic |
| AGCGCAACTTGAATCGAAAG+TGG | 0.552457 | 3.2:+8019362 | None:intergenic |
| AACTAAATCATCAACTGACC+CGG | 0.556029 | 3.2:+8018443 | None:intergenic |
| GCAACTGCTTTCATAGATAG+GGG | 0.564884 | 3.2:-8017895 | MS.gene65760:CDS |
| TGAAACTTCTAATATGCTGA+AGG | 0.565372 | 3.2:-8018052 | MS.gene65760:CDS |
| ATTGTTAGATTTGATTGAGA+AGG | 0.565659 | 3.2:-8018172 | MS.gene65760:CDS |
| GTTTAAGATCACATGTCAAG+AGG | 0.572224 | 3.2:+8017754 | None:intergenic |
| GTTTGATATTTCAGATACAA+AGG | 0.573218 | 3.2:-8018370 | MS.gene65760:CDS |
| AGAAACGAGACGAGAGACAA+AGG | 0.574965 | 3.2:+8019253 | None:intergenic |
| GCGCAACTTGAATCGAAAGT+GGG | 0.576142 | 3.2:+8019363 | None:intergenic |
| GTCTGTTGATTTCAAGAACA+AGG | 0.576796 | 3.2:-8019096 | MS.gene65760:intron |
| TCTGAATGGCAACTCTGTCA+AGG | 0.581715 | 3.2:-8018331 | MS.gene65760:CDS |
| AGAGAGGCAAGGACCACCGG+AGG | 0.589977 | 3.2:+8019208 | None:intergenic |
| TCCTCGTAACTTCTCATGAA+GGG | 0.599856 | 3.2:+8018306 | None:intergenic |
| CTTGAAATCAACAGACGACA+AGG | 0.603597 | 3.2:+8019103 | None:intergenic |
| ACTGTACTTTAAAGGAGCAT+GGG | 0.607721 | 3.2:-8018400 | MS.gene65760:CDS |
| CAACTGCTTTCATAGATAGG+GGG | 0.609353 | 3.2:-8017894 | MS.gene65760:CDS |
| CGCAACTTGAATCGAAAGTG+GGG | 0.612220 | 3.2:+8019364 | None:intergenic |
| CGGAGGGAGCAGCATTGGAG+AGG | 0.619755 | 3.2:+8019225 | None:intergenic |
| GAAATATCTTCGAAATAACA+AGG | 0.625143 | 3.2:+8017965 | None:intergenic |
| GTACTTTAAAGGAGCATGGG+AGG | 0.625570 | 3.2:-8018397 | MS.gene65760:CDS |
| ATTGAATCTTGGAATCCGGA+AGG | 0.629746 | 3.2:+8018089 | None:intergenic |
| TAGATGTTTGGCGATTCTGA+GGG | 0.637812 | 3.2:+8019421 | None:intergenic |
| GATGATTTAGTTGTGCTCAT+CGG | 0.637863 | 3.2:-8018432 | MS.gene65760:CDS |
| AGCAGGTACTGAAGCTGCTG+CGG | 0.638818 | 3.2:-8017917 | MS.gene65760:CDS |
| ACAATCCATTAACGAAAGAG+AGG | 0.652005 | 3.2:+8019192 | None:intergenic |
| ACTAAATCATCAACTGACCC+GGG | 0.653859 | 3.2:+8018444 | None:intergenic |
| TCCCTTCATGAGAAGTTACG+AGG | 0.661087 | 3.2:-8018307 | MS.gene65760:CDS |
| CCATTAACGAAAGAGAGGCA+AGG | 0.677255 | 3.2:+8019197 | None:intergenic |
| GAGAGGCAAGGACCACCGGA+GGG | 0.686020 | 3.2:+8019209 | None:intergenic |
| AAATCATCAACTGACCCGGG+TGG | 0.698731 | 3.2:+8018447 | None:intergenic |
| GAAATCAACAGACGACAAGG+TGG | 0.734878 | 3.2:+8019106 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATGTTTATAAAATAGT+TGG | + | chr3.2:8018681-8018700 | None:intergenic | 10.0% |
| !!! | ACTTATTTTTGTATTTTATA+TGG | - | chr3.2:8018706-8018725 | MS.gene65760:intron | 10.0% |
| !!! | ATTTGTATTCTTTTATTAAA+AGG | + | chr3.2:8018349-8018368 | None:intergenic | 10.0% |
| !! | ATTTCTTGCTTATTAATTAA+AGG | - | chr3.2:8018232-8018251 | MS.gene65760:CDS | 15.0% |
| !!! | TGTATTTTATATGGTTTTAA+AGG | - | chr3.2:8018715-8018734 | MS.gene65760:intron | 15.0% |
| !! | AATAAAAATAATCGTTTGTG+AGG | + | chr3.2:8018263-8018282 | None:intergenic | 20.0% |
| !! | AATCGTATCTAATGATTATA+AGG | - | chr3.2:8018127-8018146 | MS.gene65760:CDS | 20.0% |
| !! | ACTTAAAGAAGTGAATTTAT+GGG | - | chr3.2:8018748-8018767 | MS.gene65760:intron | 20.0% |
| !! | GGTTATAGTTATAATGTATT+TGG | - | chr3.2:8018391-8018410 | MS.gene65760:CDS | 20.0% |
| !! | TAGTAATATGAAATTTCAAG+AGG | + | chr3.2:8018523-8018542 | None:intergenic | 20.0% |
| !! | TCAAAAGAAATATTGAATCT+TGG | + | chr3.2:8019181-8019200 | None:intergenic | 20.0% |
| ! | AAATATTGAATCTTGGAATC+CGG | + | chr3.2:8019174-8019193 | None:intergenic | 25.0% |
| ! | AATAAGCAAGAAATCAAAGT+AGG | + | chr3.2:8018226-8018245 | None:intergenic | 25.0% |
| ! | AATCATTAGATACGATTTGT+TGG | + | chr3.2:8018124-8018143 | None:intergenic | 25.0% |
| ! | ATAAGCAAGAAATCAAAGTA+GGG | + | chr3.2:8018225-8018244 | None:intergenic | 25.0% |
| ! | ATTGTTAGATTTGATTGAGA+AGG | - | chr3.2:8019084-8019103 | MS.gene65760:intron | 25.0% |
| ! | CACTTAAAGAAGTGAATTTA+TGG | - | chr3.2:8018747-8018766 | MS.gene65760:intron | 25.0% |
| ! | GAAATATCTTCGAAATAACA+AGG | + | chr3.2:8019294-8019313 | None:intergenic | 25.0% |
| ! | GTGTTGTAAAATCTCAAATT+CGG | + | chr3.2:8019116-8019135 | None:intergenic | 25.0% |
| ! | GTTTATTTCATCACAAAGTA+GGG | - | chr3.2:8018370-8018389 | MS.gene65760:CDS | 25.0% |
| ! | GTTTGATATTTCAGATACAA+AGG | - | chr3.2:8018886-8018905 | MS.gene65760:intron | 25.0% |
| ! | TGTTTATTTCATCACAAAGT+AGG | - | chr3.2:8018369-8018388 | MS.gene65760:CDS | 25.0% |
| ! | TTTATTGAAGTAAATGAAGC+AGG | - | chr3.2:8019322-8019341 | MS.gene65760:CDS | 25.0% |
| !! | ATTTTACCTTTTTCCGATAT+TGG | - | chr3.2:8019238-8019257 | MS.gene65760:CDS | 25.0% |
| !! | TATGATTTTCACATTCTGAA+TGG | - | chr3.2:8018911-8018930 | MS.gene65760:intron | 25.0% |
| !!! | TTCTTTTGAGAATAGATGTT+TGG | + | chr3.2:8017850-8017869 | None:intergenic | 25.0% |
| ATAAAAAATCTACTTCCACC+CGG | - | chr3.2:8018794-8018813 | MS.gene65760:intron | 30.0% | |
| ATCCTACTCTTTATTAGTGA+AGG | + | chr3.2:8018294-8018313 | None:intergenic | 30.0% | |
| ATTCACTTCTTTAAGTGCTT+CGG | + | chr3.2:8018744-8018763 | None:intergenic | 30.0% | |
| CTCTGATCAAAAACAAGAAA+GGG | + | chr3.2:8019438-8019457 | None:intergenic | 30.0% | |
| GTTGAATAGTTGTATGCTAA+AGG | + | chr3.2:8018568-8018587 | None:intergenic | 30.0% | |
| GTTGAGATAATCAGTTGATT+TGG | + | chr3.2:8017982-8018001 | None:intergenic | 30.0% | |
| TCAAGAGGCAATTGAATAAT+TGG | + | chr3.2:8018508-8018527 | None:intergenic | 30.0% | |
| TCTCTGATCAAAAACAAGAA+AGG | + | chr3.2:8019439-8019458 | None:intergenic | 30.0% | |
| TCTGTTTGGACTTTAATTCA+CGG | + | chr3.2:8017773-8017792 | None:intergenic | 30.0% | |
| TGAAACTTCTAATATGCTGA+AGG | - | chr3.2:8019204-8019223 | MS.gene65760:CDS | 30.0% | |
| ! | ACGTATCATTCTTTTCTGTT+TGG | + | chr3.2:8017787-8017806 | None:intergenic | 30.0% |
| ! | ATAGTACAACTTGATGACTT+TGG | - | chr3.2:8018438-8018457 | MS.gene65760:CDS | 30.0% |
| !! | ATTAGATACGATTTGTTGGA+AGG | + | chr3.2:8018120-8018139 | None:intergenic | 30.0% |
| AACTAAATCATCAACTGACC+CGG | + | chr3.2:8018816-8018835 | None:intergenic | 35.0% | |
| ACAATCCATTAACGAAAGAG+AGG | + | chr3.2:8018067-8018086 | None:intergenic | 35.0% | |
| CACCTTCACTAATAAAGAGT+AGG | - | chr3.2:8018289-8018308 | MS.gene65760:CDS | 35.0% | |
| GATGATTTAGTTGTGCTCAT+CGG | - | chr3.2:8018824-8018843 | MS.gene65760:intron | 35.0% | |
| GCAAATGCACTGTACTTTAA+AGG | - | chr3.2:8018848-8018867 | MS.gene65760:intron | 35.0% | |
| TAAAAAATCTACTTCCACCC+GGG | - | chr3.2:8018795-8018814 | MS.gene65760:intron | 35.0% | |
| TCAGCCACAAATTCTATCTT+CGG | + | chr3.2:8019412-8019431 | None:intergenic | 35.0% | |
| TGAATAATTGGTCACATACG+TGG | + | chr3.2:8018496-8018515 | None:intergenic | 35.0% | |
| TTTCTTCCTGATGCAAAAGA+TGG | - | chr3.2:8019061-8019080 | MS.gene65760:intron | 35.0% | |
| ! | AACAATCCATCTTTTGCATC+AGG | + | chr3.2:8019070-8019089 | None:intergenic | 35.0% |
| ! | ACTGTACTTTAAAGGAGCAT+GGG | - | chr3.2:8018856-8018875 | MS.gene65760:intron | 35.0% |
| ! | CTTTTGCATCAGGAAGAAAA+AGG | + | chr3.2:8019060-8019079 | None:intergenic | 35.0% |
| ! | TCTGGAACTGTACTCTTTAT+TGG | - | chr3.2:8019466-8019485 | MS.gene65760:CDS | 35.0% |
| ! | TTACCTTTTTCCGATATTGG+AGG | - | chr3.2:8019241-8019260 | MS.gene65760:CDS | 35.0% |
| ! | TTGTTTTCACCTTGCTCAAA+GGG | + | chr3.2:8019019-8019038 | None:intergenic | 35.0% |
| !! | AATCAGTTGATTTGGAGAGA+AGG | + | chr3.2:8017974-8017993 | None:intergenic | 35.0% |
| !! | CTCTTTCGTTAATGGATTGT+GGG | - | chr3.2:8018067-8018086 | MS.gene65760:CDS | 35.0% |
| !! | GTCTGTTGATTTCAAGAACA+AGG | - | chr3.2:8018160-8018179 | MS.gene65760:CDS | 35.0% |
| !! | TCTCTTTCGTTAATGGATTG+TGG | - | chr3.2:8018066-8018085 | MS.gene65760:CDS | 35.0% |
| ACACCTCCAATATCGGAAAA+AGG | + | chr3.2:8019247-8019266 | None:intergenic | 40.0% | |
| ACTAAATCATCAACTGACCC+GGG | + | chr3.2:8018815-8018834 | None:intergenic | 40.0% | |
| AGTTACGAGGAGCAGTTTAT+CGG | - | chr3.2:8018962-8018981 | MS.gene65760:intron | 40.0% | |
| ATAGATGTTTGGCGATTCTG+AGG | + | chr3.2:8017839-8017858 | None:intergenic | 40.0% | |
| ATTGAATCTTGGAATCCGGA+AGG | + | chr3.2:8019170-8019189 | None:intergenic | 40.0% | |
| CAACTGCTTTCATAGATAGG+GGG | - | chr3.2:8019362-8019381 | MS.gene65760:CDS | 40.0% | |
| CAAGAAATCAAAGTAGGGCA+TGG | + | chr3.2:8018220-8018239 | None:intergenic | 40.0% | |
| CACTCCGAAGATAGAATTTG+TGG | - | chr3.2:8019405-8019424 | MS.gene65760:CDS | 40.0% | |
| CCTAGTCGAAAAGTTGAAGT+TGG | - | chr3.2:8019142-8019161 | MS.gene65760:CDS | 40.0% | |
| CTGCTCGAAGAAATAAGTTG+AGG | + | chr3.2:8018652-8018671 | None:intergenic | 40.0% | |
| CTTGAAATCAACAGACGACA+AGG | + | chr3.2:8018156-8018175 | None:intergenic | 40.0% | |
| GCAACTGCTTTCATAGATAG+GGG | - | chr3.2:8019361-8019380 | MS.gene65760:CDS | 40.0% | |
| GGCAACTGCTTTCATAGATA+GGG | - | chr3.2:8019360-8019379 | MS.gene65760:CDS | 40.0% | |
| GTATGCTAAAGGATAGCTGA+AGG | + | chr3.2:8018557-8018576 | None:intergenic | 40.0% | |
| TAGATGTTTGGCGATTCTGA+GGG | + | chr3.2:8017838-8017857 | None:intergenic | 40.0% | |
| TCCTCGTAACTTCTCATGAA+GGG | + | chr3.2:8018953-8018972 | None:intergenic | 40.0% | |
| TCTAATATGCTGAAGGAGCT+AGG | - | chr3.2:8019211-8019230 | MS.gene65760:CDS | 40.0% | |
| TGGGCTGAAAAAGAGACAAA+TGG | - | chr3.2:8018767-8018786 | MS.gene65760:intron | 40.0% | |
| ! | CACTGTACTTTAAAGGAGCA+TGG | - | chr3.2:8018855-8018874 | MS.gene65760:intron | 40.0% |
| ! | CAGTTTATCGGTGTTCTTGA+TGG | - | chr3.2:8018974-8018993 | MS.gene65760:intron | 40.0% |
| ! | CATGGATTGCAATGAAACGA+GGG | + | chr3.2:8018202-8018221 | None:intergenic | 40.0% |
| ! | CCAACTTCAACTTTTCGACT+AGG | + | chr3.2:8019145-8019164 | None:intergenic | 40.0% |
| ! | TATTGGAGGTGTGGCAAAAA+TGG | - | chr3.2:8019255-8019274 | MS.gene65760:CDS | 40.0% |
| ! | TTTTGCCACACCTCCAATAT+CGG | + | chr3.2:8019254-8019273 | None:intergenic | 40.0% |
| ! | TTTTTCCGATATTGGAGGTG+TGG | - | chr3.2:8019246-8019265 | MS.gene65760:CDS | 40.0% |
| !! | CTTGTTTTCACCTTGCTCAA+AGG | + | chr3.2:8019020-8019039 | None:intergenic | 40.0% |
| !! | GATACGATTTGTTGGAAGGA+AGG | + | chr3.2:8018116-8018135 | None:intergenic | 40.0% |
| !! | TTCTGAGGGAAACTTTTGTC+TGG | + | chr3.2:8017824-8017843 | None:intergenic | 40.0% |
| AGAAACGAGACGAGAGACAA+AGG | + | chr3.2:8018006-8018025 | None:intergenic | 45.0% | |
| AGCGCAACTTGAATCGAAAG+TGG | + | chr3.2:8017897-8017916 | None:intergenic | 45.0% | |
| CCATTAACGAAAGAGAGGCA+AGG | + | chr3.2:8018062-8018081 | None:intergenic | 45.0% | |
| CCTTGCCTCTCTTTCGTTAA+TGG | - | chr3.2:8018059-8018078 | MS.gene65760:CDS | 45.0% | |
| CGCAACTTGAATCGAAAGTG+GGG | + | chr3.2:8017895-8017914 | None:intergenic | 45.0% | |
| CGGCAACTGCTTTCATAGAT+AGG | - | chr3.2:8019359-8019378 | MS.gene65760:CDS | 45.0% | |
| CTCCTCGTAACTTCTCATGA+AGG | + | chr3.2:8018954-8018973 | None:intergenic | 45.0% | |
| GAAATCAACAGACGACAAGG+TGG | + | chr3.2:8018153-8018172 | None:intergenic | 45.0% | |
| GAAGGAAGGTTGAAGAGAAC+GGG | + | chr3.2:8018102-8018121 | None:intergenic | 45.0% | |
| GCGCAACTTGAATCGAAAGT+GGG | + | chr3.2:8017896-8017915 | None:intergenic | 45.0% | |
| GCTTTCATAGATAGGGGGTT+TGG | - | chr3.2:8019367-8019386 | MS.gene65760:CDS | 45.0% | |
| GGAAGGAAGGTTGAAGAGAA+CGG | + | chr3.2:8018103-8018122 | None:intergenic | 45.0% | |
| TCCCTTCATGAGAAGTTACG+AGG | - | chr3.2:8018949-8018968 | MS.gene65760:intron | 45.0% | |
| TCGAGAAGCTGTTCTCTTGT+GGG | + | chr3.2:8017948-8017967 | None:intergenic | 45.0% | |
| TCTGAATGGCAACTCTGTCA+AGG | - | chr3.2:8018925-8018944 | MS.gene65760:intron | 45.0% | |
| TTGATCAGAGACGATCTGTC+TGG | - | chr3.2:8019448-8019467 | MS.gene65760:CDS | 45.0% | |
| ! | GCATGGATTGCAATGAAACG+AGG | + | chr3.2:8018203-8018222 | None:intergenic | 45.0% |
| ! | GTACTTTAAAGGAGCATGGG+AGG | - | chr3.2:8018859-8018878 | MS.gene65760:intron | 45.0% |
| !! | AAGTTGAAGTTGGTGCCTTC+CGG | - | chr3.2:8019152-8019171 | MS.gene65760:CDS | 45.0% |
| !! | TATCTTCGGAGTGTCGTCTA+AGG | + | chr3.2:8019398-8019417 | None:intergenic | 45.0% |
| AAATCATCAACTGACCCGGG+TGG | + | chr3.2:8018812-8018831 | None:intergenic | 50.0% | |
| CTTCGTCTTCCCTTTGAGCA+AGG | - | chr3.2:8019007-8019026 | MS.gene65760:intron | 50.0% | |
| GTCGAGAAGCTGTTCTCTTG+TGG | + | chr3.2:8017949-8017968 | None:intergenic | 50.0% | |
| ! | GGTGTGGCAAAAATGGTGGA+TGG | - | chr3.2:8019262-8019281 | MS.gene65760:CDS | 50.0% |
| ! | TGGAGGTGTGGCAAAAATGG+TGG | - | chr3.2:8019258-8019277 | MS.gene65760:CDS | 50.0% |
| !! | ATGATCACTGCTGGCTCTGA+CGG | - | chr3.2:8017921-8017940 | MS.gene65760:CDS | 50.0% |
| GAAAGAGAGGCAAGGACCAC+CGG | + | chr3.2:8018054-8018073 | None:intergenic | 55.0% | |
| !! | AGCAGGTACTGAAGCTGCTG+CGG | - | chr3.2:8019339-8019358 | MS.gene65760:CDS | 55.0% |
| CTCTCCAATGCTGCTCCCTC+CGG | - | chr3.2:8018032-8018051 | MS.gene65760:CDS | 60.0% | |
| GCGCTCAGCATGATCACTGC+TGG | - | chr3.2:8017912-8017931 | MS.gene65760:CDS | 60.0% | |
| ! | GGGAGCAGCATTGGAGAGGA+TGG | + | chr3.2:8018030-8018049 | None:intergenic | 60.0% |
| ACCACCGGAGGGAGCAGCAT+TGG | + | chr3.2:8018039-8018058 | None:intergenic | 65.0% | |
| AGAGAGGCAAGGACCACCGG+AGG | + | chr3.2:8018051-8018070 | None:intergenic | 65.0% | |
| GAGAGGCAAGGACCACCGGA+GGG | + | chr3.2:8018050-8018069 | None:intergenic | 65.0% | |
| TCCAATGCTGCTCCCTCCGG+TGG | - | chr3.2:8018035-8018054 | MS.gene65760:CDS | 65.0% | |
| ! | CGGAGGGAGCAGCATTGGAG+AGG | + | chr3.2:8018034-8018053 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 8017762 | 8019516 | 8017762 | ID=MS.gene65760 |
| chr3.2 | mRNA | 8017762 | 8019516 | 8017762 | ID=MS.gene65760.t1;Parent=MS.gene65760 |
| chr3.2 | exon | 8019097 | 8019516 | 8019097 | ID=MS.gene65760.t1.exon1;Parent=MS.gene65760.t1 |
| chr3.2 | CDS | 8019097 | 8019516 | 8019097 | ID=cds.MS.gene65760.t1;Parent=MS.gene65760.t1 |
| chr3.2 | exon | 8017762 | 8018541 | 8017762 | ID=MS.gene65760.t1.exon2;Parent=MS.gene65760.t1 |
| chr3.2 | CDS | 8017762 | 8018541 | 8017762 | ID=cds.MS.gene65760.t1;Parent=MS.gene65760.t1 |
| Gene Sequence |
| Protein sequence |
