AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene65813

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene65813.t1 MTR_3g018740 82.642 386 64 1 22 404 3 388 0.0 627
MS.gene65813.t1 MTR_3g101010 72.280 386 101 2 22 402 3 387 0.0 526
MS.gene65813.t1 MTR_8g027395 69.452 383 113 3 22 402 15 395 0.0 516
MS.gene65813.t1 MTR_2g045980 68.205 390 113 5 22 404 3 388 1.16e-180 508
MS.gene65813.t1 MTR_4g045707 66.841 383 123 2 23 402 5 386 2.15e-179 504
MS.gene65813.t1 MTR_2g046030 66.923 390 118 4 22 404 3 388 4.19e-179 504
MS.gene65813.t1 MTR_8g027420 67.624 383 109 4 22 402 4 373 7.53e-177 498
MS.gene65813.t1 MTR_3g101180 64.304 395 123 6 24 402 6 398 1.69e-171 485
MS.gene65813.t1 MTR_8g461160 65.128 390 126 4 24 404 6 394 1.53e-169 480
MS.gene65813.t1 MTR_3g101030 64.232 397 116 5 29 402 34 427 2.99e-169 481
MS.gene65813.t1 MTR_3g048000 63.780 381 117 4 25 402 28 390 8.97e-169 478
MS.gene65813.t1 MTR_7g451890 60.560 393 145 3 20 403 10 401 5.41e-167 474
MS.gene65813.t1 MTR_4g088535 66.931 378 105 5 24 399 7 366 7.56e-167 473
MS.gene65813.t1 MTR_7g050810 59.223 412 150 4 1 403 1 403 1.39e-166 473
MS.gene65813.t1 MTR_4g088525 65.928 361 121 2 43 402 8 367 2.52e-165 468
MS.gene65813.t1 MTR_3g101130 62.371 388 133 4 23 402 5 387 1.97e-164 467
MS.gene65813.t1 MTR_7g047780 61.323 393 142 4 20 403 10 401 3.12e-164 467
MS.gene65813.t1 MTR_7g050750 59.949 392 147 3 21 403 5 395 4.06e-162 461
MS.gene65813.t1 MTR_3g015620 62.000 400 118 5 13 403 5 379 5.21e-156 445
MS.gene65813.t1 MTR_3g101050 64.491 383 111 7 27 402 32 396 1.86e-151 434
MS.gene65813.t1 MTR_3g102920 53.623 414 137 8 4 402 35 408 8.42e-132 385
MS.gene65813.t1 MTR_3g101190 54.856 381 99 6 22 402 3 310 1.48e-127 370
MS.gene65813.t1 MTR_3g018747 73.180 261 52 2 148 404 9 255 4.76e-127 367
MS.gene65813.t1 MTR_3g101200 52.645 397 155 6 13 402 20 390 4.84e-123 362
MS.gene65813.t1 MTR_3g100995 65.613 253 80 2 155 403 14 263 1.94e-113 332
MS.gene65813.t1 MTR_7g050830 52.226 337 120 4 1 315 1 318 1.55e-111 330
MS.gene65813.t1 MTR_3g100010 56.090 312 89 3 47 325 40 336 4.69e-106 317
MS.gene65813.t1 MTR_3g015760 61.372 277 97 3 133 403 8 280 5.72e-105 311
MS.gene65813.t1 MTR_3g111160 68.868 212 59 2 196 402 9 218 1.25e-93 280
MS.gene65813.t1 MTR_3g114310 42.602 392 206 11 25 401 20 407 2.25e-87 271
MS.gene65813.t1 MTR_3g100520 62.500 216 70 3 189 402 1 207 4.42e-85 258
MS.gene65813.t1 MTR_3g101110 58.475 236 64 3 151 378 71 280 4.09e-82 253
MS.gene65813.t1 MTR_2g046410 59.664 238 77 5 174 404 124 349 6.22e-82 255
MS.gene65813.t1 MTR_3g099970 59.898 197 61 2 148 344 20 198 2.73e-73 228
MS.gene65813.t1 MTR_3g111150 64.205 176 39 1 26 201 1 152 2.54e-70 219
MS.gene65813.t1 MTR_3g101150 64.557 158 46 2 254 402 1 157 3.53e-62 197
MS.gene65813.t1 MTR_3g102870 58.788 165 62 2 211 370 1 164 7.22e-58 187
MS.gene65813.t1 MTR_3g101020 53.763 186 55 2 222 403 1 159 1.82e-55 180
MS.gene65813.t1 MTR_3g100990 73.810 126 33 0 23 148 4 129 1.78e-53 185
MS.gene65813.t1 MTR_4g093550 67.045 88 29 0 20 107 2 89 3.68e-29 109
MS.gene65813.t1 MTR_6g046890 65.753 73 20 1 43 110 18 90 5.13e-21 89.0
MS.gene65813.t1 MTR_3g101140 59.459 74 23 2 335 402 42 114 2.36e-17 77.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene65813.t1 AT1G47710 52.835 388 176 3 22 402 3 390 8.88e-142 409
MS.gene65813.t1 AT1G47710 52.835 388 176 3 22 402 30 417 3.24e-141 409
MS.gene65813.t1 AT3G45220 48.849 391 186 7 22 401 3 390 8.12e-122 358
MS.gene65813.t1 AT2G25240 49.105 391 177 7 22 401 3 382 1.93e-118 350
MS.gene65813.t1 AT2G26390 48.223 394 180 7 22 401 3 386 2.20e-117 347
MS.gene65813.t1 AT1G64030 42.967 391 190 6 22 401 3 371 3.89e-97 295
MS.gene65813.t1 AT2G14540 41.646 401 201 7 11 401 20 397 4.76e-94 288
MS.gene65813.t1 AT2G35580 42.716 405 182 10 11 401 3 371 1.44e-93 286
MS.gene65813.t1 AT1G62170 40.103 389 199 6 24 401 66 431 1.06e-91 283
MS.gene65813.t1 AT1G62170 36.967 422 199 7 24 401 66 464 1.38e-84 266
MS.gene65813.t1 AT1G64010 44.240 217 95 4 189 401 1 195 7.38e-53 175
MS.gene65813.t1 AT1G64010 44.059 202 87 4 204 401 2 181 4.19e-47 159
MS.gene65813.t1 AT1G62160 38.068 176 88 5 228 401 62 218 5.13e-29 113
MS.gene65813.t1 AT1G63280 48.305 118 57 2 145 260 5 120 5.18e-28 107
MS.gene65813.t1 AT1G51330 47.788 113 54 2 146 254 29 140 6.46e-23 95.9
MS.gene65813.t1 AT1G64020 32.143 112 73 3 29 138 10 120 2.12e-12 64.3

Find 82 sgRNAs with CRISPR-Local

Find 112 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTAATGCACTCTACTTTAA+AGG 0.141946 3.2:+9162292 MS.gene65813:CDS
TGATTAAAGAAGTGAATTTA+TGG 0.223064 3.2:+9162191 MS.gene65813:CDS
GAGGAAGAAGTTCTTTAATA+AGG 0.287252 3.2:-9162234 None:intergenic
GGACAAAGTAGATTTATAAT+TGG 0.309459 3.2:-9161772 None:intergenic
GTTGAGATCATCGGTGGATT+TGG 0.331266 3.2:-9161613 None:intergenic
CAATGCTAACAGTCCATCTT+TGG 0.352985 3.2:-9162518 None:intergenic
ACTGGAACCATTCTCTTTGT+TGG 0.353661 3.2:+9162901 MS.gene65813:CDS
CTCTCGGACGCCGCTTTCAC+TGG 0.368166 3.2:+9161666 MS.gene65813:CDS
TGAAGGAAGGTTGAAGAGAA+AGG 0.378765 3.2:-9161734 None:intergenic
CTTCGTCTTCTTTATAAGAA+AGG 0.383719 3.2:+9162451 MS.gene65813:CDS
GATTAAAGAAGTGAATTTAT+GGG 0.386003 3.2:+9162192 MS.gene65813:CDS
TCTCATATGTTGAAGGAGTT+AGG 0.397032 3.2:+9162655 MS.gene65813:CDS
ATGGTGGACTCTTCTCTTGT+TGG 0.400037 3.2:+9162715 MS.gene65813:CDS
TTCTTTCGAGAACAGATGTT+TGG 0.401374 3.2:-9161481 None:intergenic
TGCCAAGGGAAACATTTGTT+TGG 0.406136 3.2:-9161455 None:intergenic
AACAGTCCATCTTTGGCATC+TGG 0.409162 3.2:-9162511 None:intergenic
TGAAACTTCTCATATGTTGA+AGG 0.426857 3.2:+9162648 MS.gene65813:CDS
GGAATCAGACGTTTGATGTA+TGG 0.438429 3.2:+9162320 MS.gene65813:CDS
ATTCGCGAAGAATCGTTGTT+TGG 0.444075 3.2:-9161422 None:intergenic
GAAGGAAGGTTGAAGAGAAA+GGG 0.450222 3.2:-9161733 None:intergenic
TTTCTTCCAGATGCCAAAGA+TGG 0.454297 3.2:+9162505 MS.gene65813:CDS
TTCATTGAAGTAAATGAAGA+AGG 0.457204 3.2:+9162775 MS.gene65813:CDS
GTTAAGCTATCAACCGATCT+TGG 0.459359 3.2:-9162256 None:intergenic
GTTAGCATTGGTGGAGAAGT+TGG 0.459448 3.2:+9162531 MS.gene65813:CDS
AGATGGACTGTTAGCATTGG+TGG 0.461266 3.2:+9162522 MS.gene65813:CDS
CGATGATGCTTAGCACAACT+TGG 0.463699 3.2:-9161539 None:intergenic
GAAGCTGCTGCAGCTAGTGC+TGG 0.463886 3.2:+9162802 MS.gene65813:CDS
CGGACGCCGCTTTCACTGGC+GGG 0.466882 3.2:+9161670 MS.gene65813:CDS
TCACTGAGCTTCCATTCAAA+AGG 0.472058 3.2:-9162366 None:intergenic
AGACTATAGTGTAGTAAGTC+AGG 0.490539 3.2:-9162562 None:intergenic
GACGTTTGATGTATGGAAAA+CGG 0.491740 3.2:+9162327 MS.gene65813:CDS
CATCCCCTCGGTAGTCATGA+AGG 0.493267 3.2:-9162395 None:intergenic
GTGCTAAGCATCATCGCTGC+TGG 0.494658 3.2:+9161546 MS.gene65813:CDS
CTAATTAGAGAAGATTCGAC+TGG 0.496334 3.2:+9162883 MS.gene65813:CDS
AACCAAACAAATGTTTCCCT+TGG 0.496560 3.2:+9161453 MS.gene65813:CDS
CTCTGTTGATTTCATAACCA+AGG 0.503875 3.2:+9161794 MS.gene65813:CDS
CACTCTACTTTAAAGGAGCA+TGG 0.505591 3.2:+9162299 MS.gene65813:CDS
GCGAAGAATCGTTGTTTGGT+TGG 0.508179 3.2:-9161418 None:intergenic
TCTCTAATTAGAAATAAGAA+AGG 0.509129 3.2:-9162871 None:intergenic
ATCATCGCTGCTGGCTCTGA+GGG 0.511801 3.2:+9161555 MS.gene65813:CDS
TTTGGTTGGTGATTGATTCA+CGG 0.515615 3.2:-9161404 None:intergenic
CATCATCGCTGCTGGCTCTG+AGG 0.516897 3.2:+9161554 MS.gene65813:CDS
AAGGGAAACATTTGTTTGGT+TGG 0.522469 3.2:-9161451 None:intergenic
AGAACTTCTTCCTCCAAGAT+CGG 0.523770 3.2:+9162243 MS.gene65813:CDS
CCTTGTTTCTATCGTCCTCT+CGG 0.523904 3.2:+9161650 MS.gene65813:CDS
GTCAAACCTCCAGGAGTGAA+AGG 0.524050 3.2:-9162688 None:intergenic
TCACCTACTTCTGCTTCAGC+AGG 0.528408 3.2:-9162589 None:intergenic
CACTTGTCCAACAAAGAGAA+TGG 0.528533 3.2:-9162908 None:intergenic
CGTCCTGCTGAAGCAGAAGT+AGG 0.536267 3.2:+9162586 MS.gene65813:CDS
CTCTAATTAGAAATAAGAAA+GGG 0.536391 3.2:-9162870 None:intergenic
AACAAATGTTTCCCTTGGCA+TGG 0.538587 3.2:+9161458 MS.gene65813:CDS
TCGGACGCCGCTTTCACTGG+CGG 0.540020 3.2:+9161669 MS.gene65813:CDS
TGCTAAGATCACTGATCAAG+AGG 0.544299 3.2:-9162937 None:intergenic
GCGAGGCCCGCCAGTGAAAG+CGG 0.556128 3.2:-9161676 None:intergenic
GAAATATATTAGAAACAGAA+AGG 0.558448 3.2:-9162744 None:intergenic
ACAGATGTTTGGCCATGCCA+AGG 0.566119 3.2:-9161470 None:intergenic
AAGCTATCAACCGATCTTGG+AGG 0.570822 3.2:-9162253 None:intergenic
GGCGAGGTTGTTGAGATCAT+CGG 0.582316 3.2:-9161622 None:intergenic
ATGAATAAACTGCATCCCCT+CGG 0.585021 3.2:-9162407 None:intergenic
GTCGAGAAGCTGTTGTTGTG+TGG 0.586119 3.2:-9161580 None:intergenic
TTTGAATGGAAGCTCAGTGA+AGG 0.587122 3.2:+9162369 MS.gene65813:CDS
TGCATTAGCAAAGATGAGGC+GGG 0.588872 3.2:-9162278 None:intergenic
CAGATGTTTGGCCATGCCAA+GGG 0.601831 3.2:-9161469 None:intergenic
TCGAGAAGCTGTTGTTGTGT+GGG 0.605173 3.2:-9161579 None:intergenic
GACGATAGAAACAAGGTGAG+AGG 0.606218 3.2:-9161643 None:intergenic
ATCCCCTCGGTAGTCATGAA+GGG 0.614506 3.2:-9162394 None:intergenic
TATGTTGAAGGAGTTAGGAG+TGG 0.615125 3.2:+9162660 MS.gene65813:CDS
CATCGGTGGATTTGGACTCG+AGG 0.615894 3.2:-9161605 None:intergenic
CCGAGAGGACGATAGAAACA+AGG 0.616826 3.2:-9161650 None:intergenic
GTGCATTAGCAAAGATGAGG+CGG 0.619571 3.2:-9162279 None:intergenic
AGCACAACTTGGAGTGACAA+TGG 0.624764 3.2:-9161528 None:intergenic
GTTCCCTTCATGACTACCGA+GGG 0.638567 3.2:+9162391 MS.gene65813:CDS
AGAGTGCATTAGCAAAGATG+AGG 0.641780 3.2:-9162282 None:intergenic
CAAAGATGGACTGTTAGCAT+TGG 0.645848 3.2:+9162519 MS.gene65813:CDS
CAGTGAAAGCGGCGTCCGAG+AGG 0.655885 3.2:-9161665 None:intergenic
GAGGTTGTTGAGATCATCGG+TGG 0.666044 3.2:-9161619 None:intergenic
TAGAAACAAGGTGAGAGGCG+AGG 0.684792 3.2:-9161638 None:intergenic
GGTTCCCTTCATGACTACCG+AGG 0.692485 3.2:+9162390 MS.gene65813:CDS
CTTGGTTATGAAATCAACAG+AGG 0.695380 3.2:-9161793 None:intergenic
ATACACCATCAACAAAAGAG+AGG 0.697514 3.2:-9161698 None:intergenic
CCATCAACAAAAGAGAGGCG+AGG 0.704628 3.2:-9161693 None:intergenic
TTCCCTTCATGACTACCGAG+GGG 0.739663 3.2:+9162392 MS.gene65813:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTCATGTAAATTAATTTA+AGG + chr3.2:9161872-9161891 MS.gene65813:intron 10.0%
!! TTTCATGTAAATTAATTTAA+GGG + chr3.2:9161873-9161892 MS.gene65813:intron 10.0%
!! CTGTGAAAAAAAAAAAAAAA+GGG - chr3.2:9161836-9161855 None:intergenic 15.0%
!!! ACTGATTTTTAAATTTGATA+TGG + chr3.2:9162150-9162169 MS.gene65813:intron 15.0%
!! CAAAAAAATCTATAGTACTA+AGG + chr3.2:9161994-9162013 MS.gene65813:intron 20.0%
!! CTCTAATTAGAAATAAGAAA+GGG - chr3.2:9162873-9162892 None:intergenic 20.0%
!! GAAATATATTAGAAACAGAA+AGG - chr3.2:9162747-9162766 None:intergenic 20.0%
!! GATTAAAGAAGTGAATTTAT+GGG + chr3.2:9162192-9162211 MS.gene65813:CDS 20.0%
!! GCTGTGAAAAAAAAAAAAAA+AGG - chr3.2:9161837-9161856 None:intergenic 20.0%
!! GTGAAAATTAAACCAATAAA+AGG + chr3.2:9162078-9162097 MS.gene65813:intron 20.0%
!! TCTCTAATTAGAAATAAGAA+AGG - chr3.2:9162874-9162893 None:intergenic 20.0%
!! TGATTAAAGAAGTGAATTTA+TGG + chr3.2:9162191-9162210 MS.gene65813:CDS 20.0%
!!! TACTATAGATTTTTTTGAAG+AGG - chr3.2:9161991-9162010 None:intergenic 20.0%
!!! TCATATGAAATTTTGAATCT+TGG - chr3.2:9162625-9162644 None:intergenic 20.0%
! GGACAAAGTAGATTTATAAT+TGG - chr3.2:9161775-9161794 None:intergenic 25.0%
! TGATGCTAGAAAACAATAAA+GGG - chr3.2:9162036-9162055 None:intergenic 25.0%
! TTCATTGAAGTAAATGAAGA+AGG + chr3.2:9162775-9162794 MS.gene65813:CDS 25.0%
! TTGATGCTAGAAAACAATAA+AGG - chr3.2:9162037-9162056 None:intergenic 25.0%
!! AGCATAAGAAAACCTTTTAT+TGG - chr3.2:9162093-9162112 None:intergenic 25.0%
!! TATGATTTTCACCTTTTGAA+TGG + chr3.2:9162355-9162374 MS.gene65813:CDS 25.0%
CTTCGTCTTCTTTATAAGAA+AGG + chr3.2:9162451-9162470 MS.gene65813:CDS 30.0%
GAGGAAGAAGTTCTTTAATA+AGG - chr3.2:9162237-9162256 None:intergenic 30.0%
TCCTTTAATCAGTGTAGAAT+TGG - chr3.2:9161927-9161946 None:intergenic 30.0%
TGAAACTTCTCATATGTTGA+AGG + chr3.2:9162648-9162667 MS.gene65813:CDS 30.0%
! ACCAATTCTACACTGATTAA+AGG + chr3.2:9161923-9161942 MS.gene65813:intron 30.0%
AACCAAACAAATGTTTCCCT+TGG + chr3.2:9161453-9161472 MS.gene65813:CDS 35.0%
AAGGGAAACATTTGTTTGGT+TGG - chr3.2:9161454-9161473 None:intergenic 35.0%
AGACTATAGTGTAGTAAGTC+AGG - chr3.2:9162565-9162584 None:intergenic 35.0%
ATACACCATCAACAAAAGAG+AGG - chr3.2:9161701-9161720 None:intergenic 35.0%
CAGTGTAGAATTGGTATACT+AGG - chr3.2:9161918-9161937 None:intergenic 35.0%
CTAATTAGAGAAGATTCGAC+TGG + chr3.2:9162883-9162902 MS.gene65813:CDS 35.0%
CTTGGTTATGAAATCAACAG+AGG - chr3.2:9161796-9161815 None:intergenic 35.0%
GACGTTTGATGTATGGAAAA+CGG + chr3.2:9162327-9162346 MS.gene65813:CDS 35.0%
GCTAATGCACTCTACTTTAA+AGG + chr3.2:9162292-9162311 MS.gene65813:CDS 35.0%
TCTCATATGTTGAAGGAGTT+AGG + chr3.2:9162655-9162674 MS.gene65813:CDS 35.0%
TGCTAGAAAACAATAAAGGG+AGG - chr3.2:9162033-9162052 None:intergenic 35.0%
TTCTTTCGAGAACAGATGTT+TGG - chr3.2:9161484-9161503 None:intergenic 35.0%
! GGAAGACAAGATTCTTTTGA+AGG - chr3.2:9161754-9161773 None:intergenic 35.0%
! TAACAAAGTGTTTCGTCACA+TGG - chr3.2:9161964-9161983 None:intergenic 35.0%
!! CTCTGTTGATTTCATAACCA+AGG + chr3.2:9161794-9161813 MS.gene65813:CDS 35.0%
!! GACAAGATTCTTTTGAAGGA+AGG - chr3.2:9161750-9161769 None:intergenic 35.0%
!! TTTGGTTGGTGATTGATTCA+CGG - chr3.2:9161407-9161426 None:intergenic 35.0%
!!! CTCTTTTGTTGATGGTGTAT+GGG + chr3.2:9161701-9161720 MS.gene65813:CDS 35.0%
!!! TCTCTTTTGTTGATGGTGTA+TGG + chr3.2:9161700-9161719 MS.gene65813:CDS 35.0%
AACAAATGTTTCCCTTGGCA+TGG + chr3.2:9161458-9161477 MS.gene65813:CDS 40.0%
ACTGGAACCATTCTCTTTGT+TGG + chr3.2:9162901-9162920 MS.gene65813:CDS 40.0%
AGAACTTCTTCCTCCAAGAT+CGG + chr3.2:9162243-9162262 MS.gene65813:CDS 40.0%
AGAGTGCATTAGCAAAGATG+AGG - chr3.2:9162285-9162304 None:intergenic 40.0%
ATGAATAAACTGCATCCCCT+CGG - chr3.2:9162410-9162429 None:intergenic 40.0%
ATTCGCGAAGAATCGTTGTT+TGG - chr3.2:9161425-9161444 None:intergenic 40.0%
CAATGCTAACAGTCCATCTT+TGG - chr3.2:9162521-9162540 None:intergenic 40.0%
CACTTGTCCAACAAAGAGAA+TGG - chr3.2:9162911-9162930 None:intergenic 40.0%
GAAGGAAGGTTGAAGAGAAA+GGG - chr3.2:9161736-9161755 None:intergenic 40.0%
GGAATCAGACGTTTGATGTA+TGG + chr3.2:9162320-9162339 MS.gene65813:CDS 40.0%
GTTAAGCTATCAACCGATCT+TGG - chr3.2:9162259-9162278 None:intergenic 40.0%
TATGTTGAAGGAGTTAGGAG+TGG + chr3.2:9162660-9162679 MS.gene65813:CDS 40.0%
TCACTGAGCTTCCATTCAAA+AGG - chr3.2:9162369-9162388 None:intergenic 40.0%
TCCTGGAGGTTTGACAAAAA+TGG + chr3.2:9162696-9162715 MS.gene65813:CDS 40.0%
TGAAGGAAGGTTGAAGAGAA+AGG - chr3.2:9161737-9161756 None:intergenic 40.0%
TGCCAAGGGAAACATTTGTT+TGG - chr3.2:9161458-9161477 None:intergenic 40.0%
TGGAGGTTTGACAAAAATGG+TGG + chr3.2:9162699-9162718 MS.gene65813:CDS 40.0%
TTTCTTCCAGATGCCAAAGA+TGG + chr3.2:9162505-9162524 MS.gene65813:CDS 40.0%
TTTGAATGGAAGCTCAGTGA+AGG + chr3.2:9162369-9162388 MS.gene65813:CDS 40.0%
! CACTCTACTTTAAAGGAGCA+TGG + chr3.2:9162299-9162318 MS.gene65813:CDS 40.0%
!! ACCATTTTTGTCAAACCTCC+AGG - chr3.2:9162700-9162719 None:intergenic 40.0%
!! CAAAGATGGACTGTTAGCAT+TGG + chr3.2:9162519-9162538 MS.gene65813:CDS 40.0%
AACAGTCCATCTTTGGCATC+TGG - chr3.2:9162514-9162533 None:intergenic 45.0%
AAGCTATCAACCGATCTTGG+AGG - chr3.2:9162256-9162275 None:intergenic 45.0%
AGCACAACTTGGAGTGACAA+TGG - chr3.2:9161531-9161550 None:intergenic 45.0%
CGATGATGCTTAGCACAACT+TGG - chr3.2:9161542-9161561 None:intergenic 45.0%
GACGATAGAAACAAGGTGAG+AGG - chr3.2:9161646-9161665 None:intergenic 45.0%
GAGCTGTGTAACACAAACCT+TGG - chr3.2:9161814-9161833 None:intergenic 45.0%
GCGAAGAATCGTTGTTTGGT+TGG - chr3.2:9161421-9161440 None:intergenic 45.0%
GTGCATTAGCAAAGATGAGG+CGG - chr3.2:9162282-9162301 None:intergenic 45.0%
TCGAGAAGCTGTTGTTGTGT+GGG - chr3.2:9161582-9161601 None:intergenic 45.0%
TGCATTAGCAAAGATGAGGC+GGG - chr3.2:9162281-9162300 None:intergenic 45.0%
TGGGCTGAAAAAGAGACGAA+TGG + chr3.2:9162211-9162230 MS.gene65813:CDS 45.0%
TTCGTCACATGGCACATACA+TGG - chr3.2:9161953-9161972 None:intergenic 45.0%
! GTTGAGATCATCGGTGGATT+TGG - chr3.2:9161616-9161635 None:intergenic 45.0%
! GTTTTACCTTTCACTCCTGG+AGG + chr3.2:9162682-9162701 MS.gene65813:CDS 45.0%
!! AGATGGACTGTTAGCATTGG+TGG + chr3.2:9162522-9162541 MS.gene65813:CDS 45.0%
!! ATGGTGGACTCTTCTCTTGT+TGG + chr3.2:9162715-9162734 MS.gene65813:CDS 45.0%
!! CCTTGTTTCTATCGTCCTCT+CGG + chr3.2:9161650-9161669 MS.gene65813:CDS 45.0%
!! GTGGTTTTACCTTTCACTCC+TGG + chr3.2:9162679-9162698 MS.gene65813:CDS 45.0%
!! GTTAGCATTGGTGGAGAAGT+TGG + chr3.2:9162531-9162550 MS.gene65813:CDS 45.0%
ACAGATGTTTGGCCATGCCA+AGG - chr3.2:9161473-9161492 None:intergenic 50.0%
ATCCCCTCGGTAGTCATGAA+GGG - chr3.2:9162397-9162416 None:intergenic 50.0%
CAGATGTTTGGCCATGCCAA+GGG - chr3.2:9161472-9161491 None:intergenic 50.0%
CCATCAACAAAAGAGAGGCG+AGG - chr3.2:9161696-9161715 None:intergenic 50.0%
CCGAGAGGACGATAGAAACA+AGG - chr3.2:9161653-9161672 None:intergenic 50.0%
GAGGTTGTTGAGATCATCGG+TGG - chr3.2:9161622-9161641 None:intergenic 50.0%
GGCGAGGTTGTTGAGATCAT+CGG - chr3.2:9161625-9161644 None:intergenic 50.0%
GTCAAACCTCCAGGAGTGAA+AGG - chr3.2:9162691-9162710 None:intergenic 50.0%
GTCGAGAAGCTGTTGTTGTG+TGG - chr3.2:9161583-9161602 None:intergenic 50.0%
GTTCCCTTCATGACTACCGA+GGG + chr3.2:9162391-9162410 MS.gene65813:CDS 50.0%
TAGAAACAAGGTGAGAGGCG+AGG - chr3.2:9161641-9161660 None:intergenic 50.0%
TCACCTACTTCTGCTTCAGC+AGG - chr3.2:9162592-9162611 None:intergenic 50.0%
TTCCCTTCATGACTACCGAG+GGG + chr3.2:9162392-9162411 MS.gene65813:CDS 50.0%
! CCTCGCCTCTCTTTTGTTGA+TGG + chr3.2:9161693-9161712 MS.gene65813:CDS 50.0%
CATCCCCTCGGTAGTCATGA+AGG - chr3.2:9162398-9162417 None:intergenic 55.0%
CGTCCTGCTGAAGCAGAAGT+AGG + chr3.2:9162586-9162605 MS.gene65813:CDS 55.0%
GGTTCCCTTCATGACTACCG+AGG + chr3.2:9162390-9162409 MS.gene65813:CDS 55.0%
GTGCTAAGCATCATCGCTGC+TGG + chr3.2:9161546-9161565 MS.gene65813:CDS 55.0%
! CATCGGTGGATTTGGACTCG+AGG - chr3.2:9161608-9161627 None:intergenic 55.0%
!! ATCATCGCTGCTGGCTCTGA+GGG + chr3.2:9161555-9161574 MS.gene65813:CDS 55.0%
GAAGCTGCTGCAGCTAGTGC+TGG + chr3.2:9162802-9162821 MS.gene65813:CDS 60.0%
!! CATCATCGCTGCTGGCTCTG+AGG + chr3.2:9161554-9161573 MS.gene65813:CDS 60.0%
CAGTGAAAGCGGCGTCCGAG+AGG - chr3.2:9161668-9161687 None:intergenic 65.0%
! CTCTCGGACGCCGCTTTCAC+TGG + chr3.2:9161666-9161685 MS.gene65813:CDS 65.0%
! TCGGACGCCGCTTTCACTGG+CGG + chr3.2:9161669-9161688 MS.gene65813:CDS 65.0%
GCGAGGCCCGCCAGTGAAAG+CGG - chr3.2:9161679-9161698 None:intergenic 70.0%
! CGGACGCCGCTTTCACTGGC+GGG + chr3.2:9161670-9161689 MS.gene65813:CDS 70.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 9161372 9162951 9161372 ID=MS.gene65813
chr3.2 mRNA 9161372 9162951 9161372 ID=MS.gene65813.t1;Parent=MS.gene65813
chr3.2 exon 9161372 9161815 9161372 ID=MS.gene65813.t1.exon1;Parent=MS.gene65813.t1
chr3.2 CDS 9161372 9161815 9161372 ID=cds.MS.gene65813.t1;Parent=MS.gene65813.t1
chr3.2 exon 9162181 9162951 9162181 ID=MS.gene65813.t1.exon2;Parent=MS.gene65813.t1
chr3.2 CDS 9162181 9162951 9162181 ID=cds.MS.gene65813.t1;Parent=MS.gene65813.t1
Gene Sequence

>MS.gene65813

ATGGAAAGAAACAAAAGAAGAACAACGATTCTCCGTGAATCAATCACCAACCAAACAACGATTCTTCGCGAATCAATCACCAACCAAACAAATGTTTCCCTTGGCATGGCCAAACATCTGTTCTCGAAAGAATCAGACAAGAACATCGTGTTTTCGCCATTGTCACTCCAAGTTGTGCTAAGCATCATCGCTGCTGGCTCTGAGGGTCCCACACAACAACAGCTTCTCGACTTCCTCGAGTCCAAATCCACCGATGATCTCAACAACCTCGCCTCTCACCTTGTTTCTATCGTCCTCTCGGACGCCGCTTTCACTGGCGGGCCTCGCCTCTCTTTTGTTGATGGTGTATGGGTTGAACAAACCCTTTCTCTTCAACCTTCCTTCAAAAGAATCTTGTCTTCCAATTATAAATCTACTTTGTCCTCTGTTGATTTCATAACCAAGGTTTGTGTTACACAGCTCCCTTTTTTTTTTTTTTTCACAGCAATCTGTCTTGTTTTATTTCATGTAAATTAATTTAAGGGTTCTACTTTCAAAAACAATCCTAGTATACCAATTCTACACTGATTAAAGGAATTCCATGTATGTGCCATGTGACGAAACACTTTGTTAGATGCCTCTTCAAAAAAATCTATAGTACTAAGGAGAAATAAACTTACCTCCCTTTATTGTTTTCTAGCATCAAACTAATTTAACAACGTATTATGTGAAAATTAAACCAATAAAAGGTTTTCTTATGCTGAAATTACTTGTGAAAAGAATTTATTCTATTCACATGACTGATTTTTAAATTTGATATGGTTTTATAGTCTGCTGAAGTGATTAAAGAAGTGAATTTATGGGCTGAAAAAGAGACGAATGGCCTTATTAAAGAACTTCTTCCTCCAAGATCGGTTGATAGCTTAACCCGCCTCATCTTTGCTAATGCACTCTACTTTAAAGGAGCATGGAATCAGACGTTTGATGTATGGAAAACGGAAGACTATGATTTTCACCTTTTGAATGGAAGCTCAGTGAAGGTTCCCTTCATGACTACCGAGGGGATGCAGTTTATTCATGAATATTATGATTATAAAGTTCTTCGTCTTCTTTATAAGAAAGGCGTAGACAAACGTCAATTTTCTATGTACATTTTTCTTCCAGATGCCAAAGATGGACTGTTAGCATTGGTGGAGAAGTTGGCATCTGAACCTGACTTACTACACTATAGTCTTCGTCCTGCTGAAGCAGAAGTAGGTGAATTCAGAATTCCAAGATTCAAAATTTCATATGAGCTTGAAACTTCTCATATGTTGAAGGAGTTAGGAGTGGTTTTACCTTTCACTCCTGGAGGTTTGACAAAAATGGTGGACTCTTCTCTTGTTGGAGATAGCCTTTCTGTTTCTAATATATTTCACAAATCTTTCATTGAAGTAAATGAAGAAGGCACTGAAGCTGCTGCAGCTAGTGCTGGATACTGTGACGCTGAGTGTGTCGCGATAGACTTTGTAGCTGATCACCCTTTCTTATTTCTAATTAGAGAAGATTCGACTGGAACCATTCTCTTTGTTGGACAAGTGCTCAATCCTCTTGATCAGTGA
Protein sequence

>MS.gene65813.t1

MERNKRRTTILRESITNQTTILRESITNQTNVSLGMAKHLFSKESDKNIVFSPLSLQVVLSIIAAGSEGPTQQQLLDFLESKSTDDLNNLASHLVSIVLSDAAFTGGPRLSFVDGVWVEQTLSLQPSFKRILSSNYKSTLSSVDFITKSAEVIKEVNLWAEKETNGLIKELLPPRSVDSLTRLIFANALYFKGAWNQTFDVWKTEDYDFHLLNGSSVKVPFMTTEGMQFIHEYYDYKVLRLLYKKGVDKRQFSMYIFLPDAKDGLLALVEKLASEPDLLHYSLRPAEAEVGEFRIPRFKISYELETSHMLKELGVVLPFTPGGLTKMVDSSLVGDSLSVSNIFHKSFIEVNEEGTEAAAASAGYCDAECVAIDFVADHPFLFLIREDSTGTILFVGQVLNPLDQ