Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65815.t1 | RHN65795.1 | 85.1 | 389 | 55 | 2 | 1 | 387 | 54 | 441 | 5.80E-178 | 633.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65815.t1 | Q9S7T8 | 53.2 | 391 | 176 | 4 | 1 | 385 | 1 | 390 | 1.7e-114 | 414.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65815.t1 | G7IW05 | 85.1 | 389 | 55 | 2 | 1 | 387 | 1 | 388 | 4.2e-178 | 633.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene065945 | MS.gene65815 | PPI |
| MS.gene031697 | MS.gene65815 | PPI |
| MS.gene65815 | MS.gene065944 | PPI |
| MS.gene006610 | MS.gene65815 | PPI |
| MS.gene65815 | MS.gene045585 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65815.t1 | MTR_3g018740 | 85.090 | 389 | 55 | 2 | 1 | 387 | 1 | 388 | 0.0 | 654 |
| MS.gene65815.t1 | MTR_3g101010 | 73.454 | 388 | 99 | 2 | 1 | 385 | 1 | 387 | 0.0 | 556 |
| MS.gene65815.t1 | MTR_4g045707 | 70.235 | 383 | 112 | 2 | 4 | 385 | 5 | 386 | 0.0 | 530 |
| MS.gene65815.t1 | MTR_2g045980 | 69.797 | 394 | 106 | 5 | 1 | 387 | 1 | 388 | 0.0 | 523 |
| MS.gene65815.t1 | MTR_8g027395 | 68.831 | 385 | 114 | 3 | 3 | 385 | 15 | 395 | 0.0 | 522 |
| MS.gene65815.t1 | MTR_2g046030 | 68.274 | 394 | 112 | 5 | 1 | 387 | 1 | 388 | 0.0 | 516 |
| MS.gene65815.t1 | MTR_3g101180 | 66.000 | 400 | 119 | 8 | 1 | 385 | 1 | 398 | 5.88e-179 | 503 |
| MS.gene65815.t1 | MTR_3g101030 | 66.247 | 397 | 110 | 6 | 10 | 385 | 34 | 427 | 1.18e-178 | 504 |
| MS.gene65815.t1 | MTR_8g461160 | 67.692 | 390 | 118 | 4 | 5 | 387 | 6 | 394 | 1.42e-178 | 502 |
| MS.gene65815.t1 | MTR_3g048000 | 66.404 | 381 | 109 | 3 | 6 | 385 | 28 | 390 | 2.57e-178 | 501 |
| MS.gene65815.t1 | MTR_4g088525 | 69.061 | 362 | 110 | 2 | 24 | 385 | 8 | 367 | 1.08e-176 | 496 |
| MS.gene65815.t1 | MTR_8g027420 | 67.102 | 383 | 113 | 3 | 3 | 385 | 4 | 373 | 3.92e-176 | 495 |
| MS.gene65815.t1 | MTR_7g451890 | 63.683 | 391 | 130 | 4 | 5 | 386 | 14 | 401 | 9.32e-172 | 485 |
| MS.gene65815.t1 | MTR_3g101130 | 63.918 | 388 | 129 | 4 | 4 | 385 | 5 | 387 | 1.85e-171 | 484 |
| MS.gene65815.t1 | MTR_7g050750 | 63.359 | 393 | 132 | 4 | 3 | 386 | 6 | 395 | 5.46e-171 | 483 |
| MS.gene65815.t1 | MTR_7g047780 | 63.939 | 391 | 129 | 5 | 5 | 386 | 14 | 401 | 2.45e-170 | 481 |
| MS.gene65815.t1 | MTR_4g088535 | 66.931 | 378 | 107 | 4 | 5 | 382 | 7 | 366 | 4.82e-169 | 478 |
| MS.gene65815.t1 | MTR_7g050810 | 63.077 | 390 | 134 | 4 | 5 | 386 | 16 | 403 | 1.08e-168 | 478 |
| MS.gene65815.t1 | MTR_3g101050 | 64.249 | 386 | 109 | 6 | 8 | 385 | 32 | 396 | 1.43e-159 | 454 |
| MS.gene65815.t1 | MTR_3g015620 | 61.697 | 389 | 117 | 4 | 5 | 386 | 16 | 379 | 8.81e-156 | 444 |
| MS.gene65815.t1 | MTR_3g018747 | 81.226 | 261 | 33 | 2 | 129 | 387 | 9 | 255 | 4.40e-146 | 414 |
| MS.gene65815.t1 | MTR_3g102920 | 56.345 | 394 | 123 | 7 | 5 | 385 | 51 | 408 | 1.61e-135 | 393 |
| MS.gene65815.t1 | MTR_3g101190 | 56.104 | 385 | 94 | 6 | 1 | 385 | 1 | 310 | 5.96e-134 | 386 |
| MS.gene65815.t1 | MTR_3g101200 | 54.381 | 388 | 146 | 5 | 3 | 385 | 29 | 390 | 2.19e-128 | 375 |
| MS.gene65815.t1 | MTR_3g100995 | 66.797 | 256 | 80 | 2 | 133 | 386 | 11 | 263 | 6.16e-120 | 348 |
| MS.gene65815.t1 | MTR_7g050830 | 57.006 | 314 | 102 | 3 | 5 | 296 | 16 | 318 | 1.76e-116 | 342 |
| MS.gene65815.t1 | MTR_3g100010 | 58.013 | 312 | 83 | 3 | 28 | 306 | 40 | 336 | 4.32e-116 | 342 |
| MS.gene65815.t1 | MTR_3g015760 | 64.394 | 264 | 84 | 4 | 128 | 386 | 22 | 280 | 3.03e-106 | 314 |
| MS.gene65815.t1 | MTR_3g111160 | 71.233 | 219 | 59 | 3 | 170 | 385 | 1 | 218 | 5.47e-103 | 303 |
| MS.gene65815.t1 | MTR_3g114310 | 42.748 | 393 | 206 | 10 | 6 | 384 | 20 | 407 | 8.09e-91 | 280 |
| MS.gene65815.t1 | MTR_3g100520 | 62.212 | 217 | 71 | 3 | 170 | 385 | 1 | 207 | 1.34e-85 | 259 |
| MS.gene65815.t1 | MTR_2g046410 | 66.029 | 209 | 61 | 4 | 186 | 387 | 144 | 349 | 5.69e-85 | 262 |
| MS.gene65815.t1 | MTR_3g101110 | 57.741 | 239 | 69 | 3 | 129 | 361 | 68 | 280 | 7.62e-85 | 259 |
| MS.gene65815.t1 | MTR_3g099970 | 64.039 | 203 | 55 | 3 | 123 | 325 | 14 | 198 | 4.73e-83 | 252 |
| MS.gene65815.t1 | MTR_3g111150 | 63.277 | 177 | 41 | 1 | 7 | 183 | 1 | 153 | 8.46e-68 | 212 |
| MS.gene65815.t1 | MTR_3g101020 | 55.914 | 186 | 53 | 3 | 203 | 386 | 1 | 159 | 1.67e-59 | 190 |
| MS.gene65815.t1 | MTR_3g101150 | 61.392 | 158 | 53 | 3 | 235 | 385 | 1 | 157 | 5.41e-58 | 186 |
| MS.gene65815.t1 | MTR_3g102870 | 59.259 | 162 | 62 | 2 | 192 | 350 | 1 | 161 | 6.72e-56 | 181 |
| MS.gene65815.t1 | MTR_3g100990 | 61.688 | 154 | 58 | 1 | 1 | 154 | 1 | 153 | 7.54e-53 | 183 |
| MS.gene65815.t1 | MTR_4g093550 | 71.429 | 84 | 24 | 0 | 5 | 88 | 6 | 89 | 3.10e-32 | 117 |
| MS.gene65815.t1 | MTR_6g046890 | 65.753 | 73 | 25 | 0 | 13 | 85 | 7 | 79 | 5.68e-23 | 94.0 |
| MS.gene65815.t1 | MTR_3g101140 | 59.459 | 74 | 25 | 2 | 316 | 385 | 42 | 114 | 1.24e-17 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65815.t1 | AT1G47710 | 53.197 | 391 | 176 | 4 | 1 | 385 | 1 | 390 | 9.72e-148 | 424 |
| MS.gene65815.t1 | AT1G47710 | 53.197 | 391 | 176 | 4 | 1 | 385 | 28 | 417 | 7.85e-147 | 422 |
| MS.gene65815.t1 | AT3G45220 | 48.601 | 393 | 190 | 5 | 1 | 384 | 1 | 390 | 8.85e-126 | 368 |
| MS.gene65815.t1 | AT2G25240 | 48.969 | 388 | 188 | 5 | 1 | 384 | 1 | 382 | 6.57e-124 | 363 |
| MS.gene65815.t1 | AT2G26390 | 48.990 | 396 | 180 | 6 | 1 | 384 | 1 | 386 | 1.34e-123 | 362 |
| MS.gene65815.t1 | AT1G64030 | 43.511 | 393 | 191 | 5 | 1 | 384 | 1 | 371 | 2.89e-104 | 313 |
| MS.gene65815.t1 | AT2G14540 | 44.133 | 392 | 188 | 6 | 1 | 384 | 29 | 397 | 2.45e-102 | 309 |
| MS.gene65815.t1 | AT2G35580 | 43.766 | 393 | 176 | 9 | 1 | 384 | 15 | 371 | 5.25e-101 | 304 |
| MS.gene65815.t1 | AT1G62170 | 42.172 | 396 | 191 | 7 | 1 | 384 | 62 | 431 | 2.77e-100 | 304 |
| MS.gene65815.t1 | AT1G62170 | 38.928 | 429 | 191 | 8 | 1 | 384 | 62 | 464 | 2.98e-93 | 287 |
| MS.gene65815.t1 | AT1G64010 | 46.364 | 220 | 88 | 5 | 170 | 384 | 1 | 195 | 4.08e-59 | 191 |
| MS.gene65815.t1 | AT1G64010 | 44.878 | 205 | 83 | 5 | 185 | 384 | 2 | 181 | 5.01e-51 | 169 |
| MS.gene65815.t1 | AT1G63280 | 56.780 | 118 | 47 | 2 | 126 | 241 | 5 | 120 | 1.16e-36 | 129 |
| MS.gene65815.t1 | AT1G62160 | 38.384 | 198 | 96 | 5 | 192 | 384 | 42 | 218 | 1.69e-34 | 127 |
| MS.gene65815.t1 | AT1G51330 | 50.000 | 120 | 50 | 1 | 103 | 222 | 15 | 124 | 2.66e-28 | 110 |
| MS.gene65815.t1 | AT1G64020 | 31.405 | 121 | 80 | 3 | 1 | 119 | 1 | 120 | 1.45e-13 | 67.4 |
Find 79 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTAATGCACTCTACTTTAA+AGG | 0.141946 | 3.2:+9213026 | MS.gene65815:CDS |
| TGACTAAAGAAGTGAATTTA+TGG | 0.193244 | 3.2:+9212925 | MS.gene65815:CDS |
| CCTCGACTCTCCTTTGTTAA+TGG | 0.226202 | 3.2:+9212165 | MS.gene65815:CDS |
| TTATCTTTGCCTTTCTTATA+CGG | 0.278481 | 3.2:-9213194 | None:intergenic |
| GAGGAAGAAGTTCTTTAATA+AGG | 0.287252 | 3.2:-9212968 | None:intergenic |
| TCTCCTTTGTTAATGGTGTA+TGG | 0.291781 | 3.2:+9212172 | MS.gene65815:CDS |
| GTTGAGATGATTGGTGGATT+TGG | 0.328792 | 3.2:-9212085 | None:intergenic |
| GACAGTCCATCTTTAGCATT+TGG | 0.341529 | 3.2:-9213245 | None:intergenic |
| ACTGGAACCATTCTCTTTGT+TGG | 0.348245 | 3.2:+9213641 | MS.gene65815:CDS |
| TTCTAATTACGAGGCCACTA+TGG | 0.368326 | 3.2:+9212242 | MS.gene65815:CDS |
| CTCCTTTGTTAATGGTGTAT+GGG | 0.393630 | 3.2:+9212173 | MS.gene65815:CDS |
| TTCTTTCAAGAACAGATGTT+TGG | 0.395078 | 3.2:-9211953 | None:intergenic |
| TCTCATATGTTGAAGGAGTT+AGG | 0.397032 | 3.2:+9213389 | MS.gene65815:CDS |
| TGAAGGAAGGTTGAAGAGAA+AGG | 0.398588 | 3.2:-9212206 | None:intergenic |
| TTTCTTCCAAATGCTAAAGA+TGG | 0.400337 | 3.2:+9213239 | MS.gene65815:CDS |
| AGAAGACACGATTTCTTTGA+AGG | 0.423360 | 3.2:-9212223 | None:intergenic |
| TGAAACTTCTCATATGTTGA+AGG | 0.426857 | 3.2:+9213382 | MS.gene65815:CDS |
| CTCTCTGATGCTGCTCCCAC+AGG | 0.434951 | 3.2:+9212138 | MS.gene65815:CDS |
| TGCATAGGGAAACATTCGTT+TGG | 0.439694 | 3.2:-9211927 | None:intergenic |
| GTCAGCATTGGTTGATGAGT+TGG | 0.440539 | 3.2:+9213265 | MS.gene65815:CDS |
| GTTAAGCTATCAACTGATCT+TGG | 0.441723 | 3.2:-9212990 | None:intergenic |
| GAAGGAAGGTTGAAGAGAAA+GGG | 0.450222 | 3.2:-9212205 | None:intergenic |
| GGCGAGATCGTTGAGATGAT+TGG | 0.450466 | 3.2:-9212094 | None:intergenic |
| GACTAAAGAAGTGAATTTAT+GGG | 0.454605 | 3.2:+9212926 | MS.gene65815:CDS |
| ATGGTGGACTCTTCTCTTGT+TGG | 0.459047 | 3.2:+9213449 | MS.gene65815:CDS |
| CTTCGTCTTCCGTATAAGAA+AGG | 0.461270 | 3.2:+9213185 | MS.gene65815:CDS |
| TTCATTGAAGTAAATGAAGA+AGG | 0.463233 | 3.2:+9213509 | MS.gene65815:CDS |
| CTGATTAGAGAAGATTTGAC+TGG | 0.470746 | 3.2:+9213623 | MS.gene65815:CDS |
| ATCTCAACGATCTCGCCTCT+CGG | 0.476107 | 3.2:+9212100 | MS.gene65815:CDS |
| CATCTCCTCGCTAGTCATGA+AGG | 0.477758 | 3.2:-9213129 | None:intergenic |
| GTCAAACCTCCGGAAAAGAA+AGG | 0.482483 | 3.2:-9213422 | None:intergenic |
| TCTCTAATCAGAAATAAGAA+AGG | 0.483189 | 3.2:-9213611 | None:intergenic |
| TAGGGAAACATTCGTTTGGT+TGG | 0.488135 | 3.2:-9211923 | None:intergenic |
| AGACAATAGTGTAGTAAGTC+AGG | 0.494602 | 3.2:-9213296 | None:intergenic |
| TGCATTAGCAAAGATGAGTC+TGG | 0.499282 | 3.2:-9213012 | None:intergenic |
| ATCATCGCTGCTGGCTCTGA+GGG | 0.511801 | 3.2:+9212027 | MS.gene65815:CDS |
| GTACTAAGCATCATCGCTGC+TGG | 0.512015 | 3.2:+9212018 | MS.gene65815:CDS |
| CACTCTACTTTAAAGGAGCA+TGG | 0.514338 | 3.2:+9213033 | MS.gene65815:CDS |
| TGACCGAGCTGCCATTCAAA+AGG | 0.515686 | 3.2:-9213100 | None:intergenic |
| CTCTAATCAGAAATAAGAAA+GGG | 0.516757 | 3.2:-9213610 | None:intergenic |
| CATCATCGCTGCTGGCTCTG+AGG | 0.516897 | 3.2:+9212026 | MS.gene65815:CDS |
| GATGATTGGTGGATTTGGAC+TGG | 0.518826 | 3.2:-9212080 | None:intergenic |
| CAGATGTTTGGCAATGCATA+GGG | 0.522319 | 3.2:-9211941 | None:intergenic |
| GACACGATTTCTTTGAAGGA+AGG | 0.526117 | 3.2:-9212219 | None:intergenic |
| TCACCTACTTCTGCTTCAGC+AGG | 0.528408 | 3.2:-9213323 | None:intergenic |
| CACTTGTCCAACAAAGAGAA+TGG | 0.528533 | 3.2:-9213648 | None:intergenic |
| GCTACGAAGTCAAGCTGAGT+TGG | 0.528929 | 3.2:-9213581 | None:intergenic |
| TTTGAATGGCAGCTCGGTCA+AGG | 0.529731 | 3.2:+9213103 | MS.gene65815:CDS |
| TCTGATGCTGCTCCCACAGG+TGG | 0.535600 | 3.2:+9212141 | MS.gene65815:CDS |
| CGTCCTGCTGAAGCAGAAGT+AGG | 0.536267 | 3.2:+9213320 | MS.gene65815:CDS |
| ACAGATGTTTGGCAATGCAT+AGG | 0.540369 | 3.2:-9211942 | None:intergenic |
| GAAATCAACATAAGCCATAG+TGG | 0.543010 | 3.2:-9212256 | None:intergenic |
| TGCTAAGATCACTGATCAAG+AGG | 0.544299 | 3.2:-9213677 | None:intergenic |
| AAGCTGAGTTGGAATACCCT+TGG | 0.547886 | 3.2:-9213570 | None:intergenic |
| GAAATATATTAGAAACAGAA+AGG | 0.558448 | 3.2:-9213478 | None:intergenic |
| AAGCTATCAACTGATCTTGG+AGG | 0.569083 | 3.2:-9212987 | None:intergenic |
| TTATGTTGATTTCATAACCA+AGG | 0.579962 | 3.2:+9212266 | MS.gene65815:CDS |
| GTCGAGAAGCTGTTGTTGTG+TGG | 0.586119 | 3.2:-9212052 | None:intergenic |
| GGGAGCAGCATCAGAGAGCA+CGG | 0.587998 | 3.2:-9212133 | None:intergenic |
| TTTGGTTGGTGATTGATTCG+CGG | 0.591419 | 3.2:-9211909 | None:intergenic |
| TGCTGAAATATGTTGTTCCA+AGG | 0.600261 | 3.2:+9213553 | MS.gene65815:CDS |
| TCGAGAAGCTGTTGTTGTGT+GGG | 0.605173 | 3.2:-9212051 | None:intergenic |
| GGTGCTGAAGCTGTTGCCGT+TGG | 0.610281 | 3.2:+9213530 | MS.gene65815:CDS |
| ATCTCCTCGCTAGTCATGAA+GGG | 0.612833 | 3.2:-9213128 | None:intergenic |
| GAGATCGTTGAGATGATTGG+TGG | 0.612873 | 3.2:-9212091 | None:intergenic |
| TATGTTGAAGGAGTTAGGAG+TGG | 0.615125 | 3.2:+9213394 | MS.gene65815:CDS |
| ACAACATATTTCAGCACCAA+CGG | 0.624380 | 3.2:-9213546 | None:intergenic |
| GAGAGTCGAGGTCCACCTGT+GGG | 0.635303 | 3.2:-9212153 | None:intergenic |
| TAAAGATGGACTGTCAGCAT+TGG | 0.637494 | 3.2:+9213253 | MS.gene65815:CDS |
| GATTGGTGGATTTGGACTGG+AGG | 0.638643 | 3.2:-9212077 | None:intergenic |
| TAATCAGAAATAAGAAAGGG+TGG | 0.640706 | 3.2:-9213607 | None:intergenic |
| GGAGAGTCGAGGTCCACCTG+TGG | 0.645915 | 3.2:-9212154 | None:intergenic |
| AACCCATACACCATTAACAA+AGG | 0.653670 | 3.2:-9212175 | None:intergenic |
| AATCGTGTCTTCTAATTACG+AGG | 0.667058 | 3.2:+9212233 | MS.gene65815:CDS |
| CACGGTAGAAACAAGCCGAG+AGG | 0.667491 | 3.2:-9212115 | None:intergenic |
| GCTGAAATATGTTGTTCCAA+GGG | 0.667759 | 3.2:+9213554 | MS.gene65815:CDS |
| GGTTCCCTTCATGACTAGCG+AGG | 0.683605 | 3.2:+9213124 | MS.gene65815:CDS |
| CCATTAACAAAGGAGAGTCG+AGG | 0.698808 | 3.2:-9212165 | None:intergenic |
| AGTACAACTTGAAGAGACAG+TGG | 0.716234 | 3.2:-9212000 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTGATTTTTAAATTTGATA+TGG | + | chr3.2:9212884-9212903 | MS.gene65815:intron | 10.0% |
| !! | TCATATAGTTATGATATATT+TGG | + | chr3.2:9212582-9212601 | MS.gene65815:intron | 15.0% |
| !!! | ATTTAAAAATCAATTAGCTT+TGG | - | chr3.2:9212878-9212897 | None:intergenic | 15.0% |
| !!! | TAAATTTGATATGGTTTTAA+AGG | + | chr3.2:9212893-9212912 | MS.gene65815:intron | 15.0% |
| !! | GAAATATATTAGAAACAGAA+AGG | - | chr3.2:9213481-9213500 | None:intergenic | 20.0% |
| !! | TAGTTATGATATATTTGGAT+TGG | + | chr3.2:9212587-9212606 | MS.gene65815:intron | 20.0% |
| !! | TATCATAACTATATGATTGA+AGG | - | chr3.2:9212578-9212597 | None:intergenic | 20.0% |
| !!! | AATAACATTTGCTCTAAATT+AGG | - | chr3.2:9212398-9212417 | None:intergenic | 20.0% |
| !!! | GATTTTCCATTAACAATTAA+TGG | + | chr3.2:9212331-9212350 | MS.gene65815:intron | 20.0% |
| !!! | TCATATGAAATTTTGAATCT+TGG | - | chr3.2:9213359-9213378 | None:intergenic | 20.0% |
| ! | ACTTATAAGTATAATGCTCT+TGG | + | chr3.2:9212455-9212474 | MS.gene65815:intron | 25.0% |
| ! | CAATTAGTATTTAGAAGCTT+TGG | - | chr3.2:9212744-9212763 | None:intergenic | 25.0% |
| ! | CTCTAATCAGAAATAAGAAA+GGG | - | chr3.2:9213613-9213632 | None:intergenic | 25.0% |
| ! | GACTAAAGAAGTGAATTTAT+GGG | + | chr3.2:9212926-9212945 | MS.gene65815:CDS | 25.0% |
| ! | GTAGATCCATTAATTGTTAA+TGG | - | chr3.2:9212340-9212359 | None:intergenic | 25.0% |
| ! | TAAAAATAAACTGTTTGCGA+AGG | - | chr3.2:9212362-9212381 | None:intergenic | 25.0% |
| ! | TCTCTAATCAGAAATAAGAA+AGG | - | chr3.2:9213614-9213633 | None:intergenic | 25.0% |
| ! | TGACTAAAGAAGTGAATTTA+TGG | + | chr3.2:9212925-9212944 | MS.gene65815:CDS | 25.0% |
| ! | TTATCTTTGCCTTTCTTATA+CGG | - | chr3.2:9213197-9213216 | None:intergenic | 25.0% |
| ! | TTCATTGAAGTAAATGAAGA+AGG | + | chr3.2:9213509-9213528 | MS.gene65815:CDS | 25.0% |
| !! | ATTGGTGGTATATACTATAA+TGG | + | chr3.2:9212605-9212624 | MS.gene65815:intron | 25.0% |
| !! | TATGATTTTCACCTTTTGAA+TGG | + | chr3.2:9213089-9213108 | MS.gene65815:CDS | 25.0% |
| !! | TTATGATATATTTGGATTGG+TGG | + | chr3.2:9212590-9212609 | MS.gene65815:intron | 25.0% |
| !!! | TTATGTTGATTTCATAACCA+AGG | + | chr3.2:9212266-9212285 | MS.gene65815:CDS | 25.0% |
| ATACCTCCAAATATACAAGA+TGG | - | chr3.2:9212808-9212827 | None:intergenic | 30.0% | |
| GAGGAAGAAGTTCTTTAATA+AGG | - | chr3.2:9212971-9212990 | None:intergenic | 30.0% | |
| GTATGTCCATCTTGTATATT+TGG | + | chr3.2:9212799-9212818 | MS.gene65815:intron | 30.0% | |
| GTTAATGGAAAATCAAAGCA+GGG | - | chr3.2:9212325-9212344 | None:intergenic | 30.0% | |
| TAATCAGAAATAAGAAAGGG+TGG | - | chr3.2:9213610-9213629 | None:intergenic | 30.0% | |
| TGAAACTTCTCATATGTTGA+AGG | + | chr3.2:9213382-9213401 | MS.gene65815:CDS | 30.0% | |
| TGCTCTTGGAATTTATTTGA+TGG | + | chr3.2:9212469-9212488 | MS.gene65815:intron | 30.0% | |
| TGTTAATGGAAAATCAAAGC+AGG | - | chr3.2:9212326-9212345 | None:intergenic | 30.0% | |
| TTCTTTCAAGAACAGATGTT+TGG | - | chr3.2:9211956-9211975 | None:intergenic | 30.0% | |
| TTGATTCTAGTGTAGAAAGT+AGG | + | chr3.2:9212496-9212515 | MS.gene65815:intron | 30.0% | |
| TTTCTTCCAAATGCTAAAGA+TGG | + | chr3.2:9213239-9213258 | MS.gene65815:CDS | 30.0% | |
| ! | AAAGTAGGTTCTTCTTTTAG+AGG | + | chr3.2:9212511-9212530 | MS.gene65815:intron | 30.0% |
| ! | ATAAAAGGGTATACTTGGAT+TGG | - | chr3.2:9212696-9212715 | None:intergenic | 30.0% |
| ! | ATCCAAGTATACCCTTTTAT+TGG | + | chr3.2:9212696-9212715 | MS.gene65815:intron | 30.0% |
| ! | TGGTATATACTATAATGGAG+TGG | + | chr3.2:9212610-9212629 | MS.gene65815:intron | 30.0% |
| !! | GATTGGTGTTATTGAGTAAA+AGG | - | chr3.2:9212679-9212698 | None:intergenic | 30.0% |
| AACCCATACACCATTAACAA+AGG | - | chr3.2:9212178-9212197 | None:intergenic | 35.0% | |
| AATCGTGTCTTCTAATTACG+AGG | + | chr3.2:9212233-9212252 | MS.gene65815:CDS | 35.0% | |
| ACAACATATTTCAGCACCAA+CGG | - | chr3.2:9213549-9213568 | None:intergenic | 35.0% | |
| ACATCCAACTAGCCAATAAA+AGG | - | chr3.2:9212711-9212730 | None:intergenic | 35.0% | |
| AGAAGACACGATTTCTTTGA+AGG | - | chr3.2:9212226-9212245 | None:intergenic | 35.0% | |
| AGACAATAGTGTAGTAAGTC+AGG | - | chr3.2:9213299-9213318 | None:intergenic | 35.0% | |
| CATCCAACTAGCCAATAAAA+GGG | - | chr3.2:9212710-9212729 | None:intergenic | 35.0% | |
| CTCCTTTGTTAATGGTGTAT+GGG | + | chr3.2:9212173-9212192 | MS.gene65815:CDS | 35.0% | |
| CTGATTAGAGAAGATTTGAC+TGG | + | chr3.2:9213623-9213642 | MS.gene65815:CDS | 35.0% | |
| GAAATCAACATAAGCCATAG+TGG | - | chr3.2:9212259-9212278 | None:intergenic | 35.0% | |
| GCTAATGCACTCTACTTTAA+AGG | + | chr3.2:9213026-9213045 | MS.gene65815:CDS | 35.0% | |
| GCTGAAATATGTTGTTCCAA+GGG | + | chr3.2:9213554-9213573 | MS.gene65815:CDS | 35.0% | |
| GGAGTGGAATGAAATGATTT+GGG | + | chr3.2:9212626-9212645 | MS.gene65815:intron | 35.0% | |
| GTTAAGCTATCAACTGATCT+TGG | - | chr3.2:9212993-9213012 | None:intergenic | 35.0% | |
| TCTCATATGTTGAAGGAGTT+AGG | + | chr3.2:9213389-9213408 | MS.gene65815:CDS | 35.0% | |
| TCTCCTTTGTTAATGGTGTA+TGG | + | chr3.2:9212172-9212191 | MS.gene65815:CDS | 35.0% | |
| TGCTGAAATATGTTGTTCCA+AGG | + | chr3.2:9213553-9213572 | MS.gene65815:CDS | 35.0% | |
| TGGAGTGGAATGAAATGATT+TGG | + | chr3.2:9212625-9212644 | MS.gene65815:intron | 35.0% | |
| TGTCCATCTTGTATATTTGG+AGG | + | chr3.2:9212802-9212821 | MS.gene65815:intron | 35.0% | |
| ! | AGCCAATAAAAGGGTATACT+TGG | - | chr3.2:9212701-9212720 | None:intergenic | 35.0% |
| !! | ATACCCTTTTATTGGCTAGT+TGG | + | chr3.2:9212704-9212723 | MS.gene65815:intron | 35.0% |
| !! | GTGGTTTTACCTTTCTTTTC+CGG | + | chr3.2:9213413-9213432 | MS.gene65815:CDS | 35.0% |
| AAGCTATCAACTGATCTTGG+AGG | - | chr3.2:9212990-9213009 | None:intergenic | 40.0% | |
| ACAGATGTTTGGCAATGCAT+AGG | - | chr3.2:9211945-9211964 | None:intergenic | 40.0% | |
| ACTGGAACCATTCTCTTTGT+TGG | + | chr3.2:9213641-9213660 | MS.gene65815:CDS | 40.0% | |
| AGGATGAAGTGTGTGATTCA+TGG | + | chr3.2:9212531-9212550 | MS.gene65815:intron | 40.0% | |
| AGTACAACTTGAAGAGACAG+TGG | - | chr3.2:9212003-9212022 | None:intergenic | 40.0% | |
| CACTTGTCCAACAAAGAGAA+TGG | - | chr3.2:9213651-9213670 | None:intergenic | 40.0% | |
| CAGATGTTTGGCAATGCATA+GGG | - | chr3.2:9211944-9211963 | None:intergenic | 40.0% | |
| CTTCGTCTTCCGTATAAGAA+AGG | + | chr3.2:9213185-9213204 | MS.gene65815:CDS | 40.0% | |
| GAAGGAAGGTTGAAGAGAAA+GGG | - | chr3.2:9212208-9212227 | None:intergenic | 40.0% | |
| GACAGTCCATCTTTAGCATT+TGG | - | chr3.2:9213248-9213267 | None:intergenic | 40.0% | |
| TAGGGAAACATTCGTTTGGT+TGG | - | chr3.2:9211926-9211945 | None:intergenic | 40.0% | |
| TATGTTGAAGGAGTTAGGAG+TGG | + | chr3.2:9213394-9213413 | MS.gene65815:CDS | 40.0% | |
| TGAAGGAAGGTTGAAGAGAA+AGG | - | chr3.2:9212209-9212228 | None:intergenic | 40.0% | |
| TGCATAGGGAAACATTCGTT+TGG | - | chr3.2:9211930-9211949 | None:intergenic | 40.0% | |
| TGCATTAGCAAAGATGAGTC+TGG | - | chr3.2:9213015-9213034 | None:intergenic | 40.0% | |
| TGGGCTGAAAAAGAGACAAA+TGG | + | chr3.2:9212945-9212964 | MS.gene65815:CDS | 40.0% | |
| TTCCGGAGGTTTGACAAAAA+TGG | + | chr3.2:9213430-9213449 | MS.gene65815:CDS | 40.0% | |
| TTCTAATTACGAGGCCACTA+TGG | + | chr3.2:9212242-9212261 | MS.gene65815:CDS | 40.0% | |
| ! | CACTCTACTTTAAAGGAGCA+TGG | + | chr3.2:9213033-9213052 | MS.gene65815:CDS | 40.0% |
| ! | GACACGATTTCTTTGAAGGA+AGG | - | chr3.2:9212222-9212241 | None:intergenic | 40.0% |
| ! | GTTTTACCTTTCTTTTCCGG+AGG | + | chr3.2:9213416-9213435 | MS.gene65815:CDS | 40.0% |
| !! | CACCATTTTTGTCAAACCTC+CGG | - | chr3.2:9213435-9213454 | None:intergenic | 40.0% |
| !! | GTTGAGATGATTGGTGGATT+TGG | - | chr3.2:9212088-9212107 | None:intergenic | 40.0% |
| !! | TAAAGATGGACTGTCAGCAT+TGG | + | chr3.2:9213253-9213272 | MS.gene65815:CDS | 40.0% |
| !! | TTTGGTTGGTGATTGATTCG+CGG | - | chr3.2:9211912-9211931 | None:intergenic | 40.0% |
| AGCAGGGCATGAATTGAAAG+AGG | - | chr3.2:9212309-9212328 | None:intergenic | 45.0% | |
| AGGGCATGAATTGAAAGAGG+GGG | - | chr3.2:9212306-9212325 | None:intergenic | 45.0% | |
| ATCTCCTCGCTAGTCATGAA+GGG | - | chr3.2:9213131-9213150 | None:intergenic | 45.0% | |
| CAGGGCATGAATTGAAAGAG+GGG | - | chr3.2:9212307-9212326 | None:intergenic | 45.0% | |
| CCATTAACAAAGGAGAGTCG+AGG | - | chr3.2:9212168-9212187 | None:intergenic | 45.0% | |
| CCTCGACTCTCCTTTGTTAA+TGG | + | chr3.2:9212165-9212184 | MS.gene65815:CDS | 45.0% | |
| CGGAGGTTTGACAAAAATGG+TGG | + | chr3.2:9213433-9213452 | MS.gene65815:CDS | 45.0% | |
| GAGATCGTTGAGATGATTGG+TGG | - | chr3.2:9212094-9212113 | None:intergenic | 45.0% | |
| GCAGGGCATGAATTGAAAGA+GGG | - | chr3.2:9212308-9212327 | None:intergenic | 45.0% | |
| GTCAAACCTCCGGAAAAGAA+AGG | - | chr3.2:9213425-9213444 | None:intergenic | 45.0% | |
| TCGAGAAGCTGTTGTTGTGT+GGG | - | chr3.2:9212054-9212073 | None:intergenic | 45.0% | |
| ! | AAGCTGAGTTGGAATACCCT+TGG | - | chr3.2:9213573-9213592 | None:intergenic | 45.0% |
| ! | TCACCTTTTGAATGGCAGCT+CGG | + | chr3.2:9213097-9213116 | MS.gene65815:CDS | 45.0% |
| !! | ATGGTGGACTCTTCTCTTGT+TGG | + | chr3.2:9213449-9213468 | MS.gene65815:CDS | 45.0% |
| !! | GATGATTGGTGGATTTGGAC+TGG | - | chr3.2:9212083-9212102 | None:intergenic | 45.0% |
| !! | GTCAGCATTGGTTGATGAGT+TGG | + | chr3.2:9213265-9213284 | MS.gene65815:CDS | 45.0% |
| ATCTCAACGATCTCGCCTCT+CGG | + | chr3.2:9212100-9212119 | MS.gene65815:CDS | 50.0% | |
| CATCTCCTCGCTAGTCATGA+AGG | - | chr3.2:9213132-9213151 | None:intergenic | 50.0% | |
| GCTACGAAGTCAAGCTGAGT+TGG | - | chr3.2:9213584-9213603 | None:intergenic | 50.0% | |
| GGCATGAATTGAAAGAGGGG+GGG | - | chr3.2:9212304-9212323 | None:intergenic | 50.0% | |
| GGCGAGATCGTTGAGATGAT+TGG | - | chr3.2:9212097-9212116 | None:intergenic | 50.0% | |
| GGGCATGAATTGAAAGAGGG+GGG | - | chr3.2:9212305-9212324 | None:intergenic | 50.0% | |
| GTACTAAGCATCATCGCTGC+TGG | + | chr3.2:9212018-9212037 | MS.gene65815:CDS | 50.0% | |
| GTCGAGAAGCTGTTGTTGTG+TGG | - | chr3.2:9212055-9212074 | None:intergenic | 50.0% | |
| TCACCTACTTCTGCTTCAGC+AGG | - | chr3.2:9213326-9213345 | None:intergenic | 50.0% | |
| TGACCGAGCTGCCATTCAAA+AGG | - | chr3.2:9213103-9213122 | None:intergenic | 50.0% | |
| TTTGAATGGCAGCTCGGTCA+AGG | + | chr3.2:9213103-9213122 | MS.gene65815:CDS | 50.0% | |
| ! | GGGGGCATACAAACATACCT+TGG | - | chr3.2:9212286-9212305 | None:intergenic | 50.0% |
| !! | GATTGGTGGATTTGGACTGG+AGG | - | chr3.2:9212080-9212099 | None:intergenic | 50.0% |
| CACGGTAGAAACAAGCCGAG+AGG | - | chr3.2:9212118-9212137 | None:intergenic | 55.0% | |
| CGTCCTGCTGAAGCAGAAGT+AGG | + | chr3.2:9213320-9213339 | MS.gene65815:CDS | 55.0% | |
| GGTTCCCTTCATGACTAGCG+AGG | + | chr3.2:9213124-9213143 | MS.gene65815:CDS | 55.0% | |
| !! | ATCATCGCTGCTGGCTCTGA+GGG | + | chr3.2:9212027-9212046 | MS.gene65815:CDS | 55.0% |
| CTCTCTGATGCTGCTCCCAC+AGG | + | chr3.2:9212138-9212157 | MS.gene65815:CDS | 60.0% | |
| GAGAGTCGAGGTCCACCTGT+GGG | - | chr3.2:9212156-9212175 | None:intergenic | 60.0% | |
| GGGAGCAGCATCAGAGAGCA+CGG | - | chr3.2:9212136-9212155 | None:intergenic | 60.0% | |
| TCTGATGCTGCTCCCACAGG+TGG | + | chr3.2:9212141-9212160 | MS.gene65815:CDS | 60.0% | |
| ! | GGTGCTGAAGCTGTTGCCGT+TGG | + | chr3.2:9213530-9213549 | MS.gene65815:CDS | 60.0% |
| !! | CATCATCGCTGCTGGCTCTG+AGG | + | chr3.2:9212026-9212045 | MS.gene65815:CDS | 60.0% |
| GGAGAGTCGAGGTCCACCTG+TGG | - | chr3.2:9212157-9212176 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 9211901 | 9213691 | 9211901 | ID=MS.gene65815 |
| chr3.2 | mRNA | 9211901 | 9213691 | 9211901 | ID=MS.gene65815.t1;Parent=MS.gene65815 |
| chr3.2 | exon | 9211901 | 9212287 | 9211901 | ID=MS.gene65815.t1.exon1;Parent=MS.gene65815.t1 |
| chr3.2 | CDS | 9211901 | 9212287 | 9211901 | ID=cds.MS.gene65815.t1;Parent=MS.gene65815.t1 |
| chr3.2 | exon | 9212915 | 9213691 | 9212915 | ID=MS.gene65815.t1.exon2;Parent=MS.gene65815.t1 |
| chr3.2 | CDS | 9212915 | 9213691 | 9212915 | ID=cds.MS.gene65815.t1;Parent=MS.gene65815.t1 |
| Gene Sequence |
| Protein sequence |
