Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65817.t1 | RHN65795.1 | 81.7 | 389 | 67 | 2 | 1 | 386 | 54 | 441 | 1.90E-168 | 602.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65817.t1 | Q9S7T8 | 52.2 | 391 | 179 | 6 | 1 | 384 | 1 | 390 | 2.4e-108 | 393.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65817.t1 | G7IW05 | 81.7 | 389 | 67 | 2 | 1 | 386 | 1 | 388 | 1.4e-168 | 602.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006610 | MS.gene65817 | PPI |
| MS.gene65817 | MS.gene045585 | PPI |
| MS.gene031697 | MS.gene65817 | PPI |
| MS.gene65817 | MS.gene065944 | PPI |
| MS.gene065945 | MS.gene65817 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65817.t1 | MTR_3g018740 | 81.748 | 389 | 67 | 2 | 1 | 386 | 1 | 388 | 0.0 | 617 |
| MS.gene65817.t1 | MTR_3g101010 | 73.454 | 388 | 98 | 3 | 1 | 384 | 1 | 387 | 0.0 | 553 |
| MS.gene65817.t1 | MTR_2g045980 | 70.918 | 392 | 104 | 4 | 1 | 386 | 1 | 388 | 0.0 | 528 |
| MS.gene65817.t1 | MTR_2g046030 | 69.643 | 392 | 109 | 4 | 1 | 386 | 1 | 388 | 0.0 | 524 |
| MS.gene65817.t1 | MTR_4g045707 | 68.930 | 383 | 116 | 2 | 4 | 384 | 5 | 386 | 0.0 | 516 |
| MS.gene65817.t1 | MTR_3g101030 | 66.582 | 395 | 111 | 5 | 10 | 384 | 34 | 427 | 0.0 | 511 |
| MS.gene65817.t1 | MTR_8g027395 | 67.442 | 387 | 115 | 4 | 3 | 384 | 15 | 395 | 0.0 | 511 |
| MS.gene65817.t1 | MTR_3g048000 | 65.974 | 385 | 103 | 7 | 6 | 384 | 28 | 390 | 1.59e-175 | 494 |
| MS.gene65817.t1 | MTR_8g461160 | 67.684 | 393 | 112 | 8 | 5 | 386 | 6 | 394 | 6.61e-175 | 493 |
| MS.gene65817.t1 | MTR_8g027420 | 65.625 | 384 | 116 | 4 | 3 | 384 | 4 | 373 | 9.40e-173 | 486 |
| MS.gene65817.t1 | MTR_3g101180 | 65.012 | 403 | 117 | 10 | 1 | 384 | 1 | 398 | 5.58e-172 | 486 |
| MS.gene65817.t1 | MTR_4g088525 | 66.667 | 363 | 116 | 3 | 24 | 384 | 8 | 367 | 9.01e-171 | 481 |
| MS.gene65817.t1 | MTR_7g451890 | 63.239 | 389 | 134 | 4 | 5 | 385 | 14 | 401 | 5.97e-170 | 481 |
| MS.gene65817.t1 | MTR_7g047780 | 63.683 | 391 | 133 | 5 | 3 | 385 | 12 | 401 | 7.45e-169 | 478 |
| MS.gene65817.t1 | MTR_7g050810 | 62.660 | 391 | 137 | 4 | 3 | 385 | 14 | 403 | 1.15e-168 | 477 |
| MS.gene65817.t1 | MTR_3g101130 | 64.508 | 386 | 129 | 4 | 4 | 384 | 5 | 387 | 1.40e-167 | 474 |
| MS.gene65817.t1 | MTR_7g050750 | 61.893 | 391 | 140 | 4 | 3 | 385 | 6 | 395 | 2.52e-166 | 471 |
| MS.gene65817.t1 | MTR_4g088535 | 64.908 | 379 | 112 | 4 | 5 | 381 | 7 | 366 | 6.37e-163 | 462 |
| MS.gene65817.t1 | MTR_3g101050 | 63.351 | 382 | 118 | 6 | 8 | 384 | 32 | 396 | 7.91e-160 | 455 |
| MS.gene65817.t1 | MTR_3g018747 | 84.733 | 262 | 21 | 3 | 129 | 386 | 9 | 255 | 2.18e-154 | 435 |
| MS.gene65817.t1 | MTR_3g015620 | 60.724 | 387 | 123 | 4 | 5 | 385 | 16 | 379 | 2.14e-151 | 432 |
| MS.gene65817.t1 | MTR_3g102920 | 56.423 | 397 | 117 | 9 | 5 | 384 | 51 | 408 | 1.14e-134 | 391 |
| MS.gene65817.t1 | MTR_3g101190 | 54.922 | 386 | 96 | 5 | 1 | 384 | 1 | 310 | 6.63e-130 | 375 |
| MS.gene65817.t1 | MTR_3g101200 | 54.922 | 386 | 146 | 5 | 3 | 384 | 29 | 390 | 3.30e-126 | 369 |
| MS.gene65817.t1 | MTR_3g100995 | 68.379 | 253 | 78 | 2 | 134 | 385 | 12 | 263 | 2.04e-121 | 352 |
| MS.gene65817.t1 | MTR_7g050830 | 57.460 | 315 | 100 | 4 | 5 | 297 | 16 | 318 | 3.98e-114 | 336 |
| MS.gene65817.t1 | MTR_3g100010 | 57.188 | 313 | 85 | 4 | 28 | 307 | 40 | 336 | 3.71e-113 | 334 |
| MS.gene65817.t1 | MTR_3g015760 | 63.985 | 261 | 89 | 4 | 128 | 385 | 22 | 280 | 2.04e-104 | 309 |
| MS.gene65817.t1 | MTR_3g111160 | 71.233 | 219 | 58 | 3 | 170 | 384 | 1 | 218 | 7.63e-102 | 300 |
| MS.gene65817.t1 | MTR_2g046410 | 68.116 | 207 | 59 | 3 | 186 | 386 | 144 | 349 | 4.10e-88 | 270 |
| MS.gene65817.t1 | MTR_3g100520 | 62.557 | 219 | 66 | 5 | 170 | 384 | 1 | 207 | 1.01e-82 | 251 |
| MS.gene65817.t1 | MTR_3g114310 | 41.772 | 395 | 206 | 12 | 6 | 383 | 20 | 407 | 1.32e-82 | 258 |
| MS.gene65817.t1 | MTR_3g099970 | 63.861 | 202 | 55 | 3 | 123 | 323 | 14 | 198 | 7.14e-82 | 249 |
| MS.gene65817.t1 | MTR_3g101110 | 56.846 | 241 | 67 | 5 | 129 | 360 | 68 | 280 | 2.78e-80 | 248 |
| MS.gene65817.t1 | MTR_3g111150 | 61.582 | 177 | 44 | 1 | 7 | 183 | 1 | 153 | 3.69e-67 | 210 |
| MS.gene65817.t1 | MTR_3g101020 | 56.284 | 183 | 55 | 2 | 204 | 385 | 1 | 159 | 4.54e-61 | 194 |
| MS.gene65817.t1 | MTR_3g101150 | 63.694 | 157 | 49 | 3 | 236 | 384 | 1 | 157 | 1.85e-58 | 187 |
| MS.gene65817.t1 | MTR_3g102870 | 59.615 | 156 | 60 | 2 | 192 | 345 | 1 | 155 | 2.14e-56 | 182 |
| MS.gene65817.t1 | MTR_3g100990 | 68.939 | 132 | 41 | 0 | 1 | 132 | 1 | 132 | 3.03e-53 | 184 |
| MS.gene65817.t1 | MTR_4g093550 | 66.279 | 86 | 29 | 0 | 3 | 88 | 4 | 89 | 1.35e-31 | 115 |
| MS.gene65817.t1 | MTR_6g046890 | 67.123 | 73 | 24 | 0 | 13 | 85 | 7 | 79 | 8.12e-25 | 99.0 |
| MS.gene65817.t1 | MTR_3g101140 | 59.701 | 67 | 24 | 1 | 321 | 384 | 48 | 114 | 2.15e-15 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65817.t1 | AT1G47710 | 51.899 | 395 | 174 | 6 | 1 | 384 | 1 | 390 | 9.33e-140 | 404 |
| MS.gene65817.t1 | AT1G47710 | 51.899 | 395 | 174 | 6 | 1 | 384 | 28 | 417 | 5.19e-139 | 402 |
| MS.gene65817.t1 | AT3G45220 | 48.111 | 397 | 185 | 8 | 1 | 383 | 1 | 390 | 4.16e-122 | 358 |
| MS.gene65817.t1 | AT2G25240 | 49.231 | 390 | 183 | 8 | 1 | 383 | 1 | 382 | 1.20e-120 | 355 |
| MS.gene65817.t1 | AT2G26390 | 49.250 | 400 | 172 | 10 | 1 | 383 | 1 | 386 | 4.01e-120 | 353 |
| MS.gene65817.t1 | AT1G64030 | 42.711 | 391 | 196 | 8 | 1 | 383 | 1 | 371 | 3.73e-100 | 302 |
| MS.gene65817.t1 | AT2G14540 | 44.103 | 390 | 190 | 7 | 1 | 383 | 29 | 397 | 3.54e-97 | 295 |
| MS.gene65817.t1 | AT1G62170 | 41.688 | 391 | 199 | 6 | 1 | 383 | 62 | 431 | 1.05e-96 | 295 |
| MS.gene65817.t1 | AT2G35580 | 42.132 | 394 | 180 | 10 | 1 | 383 | 15 | 371 | 3.46e-94 | 286 |
| MS.gene65817.t1 | AT1G62170 | 38.443 | 424 | 199 | 7 | 1 | 383 | 62 | 464 | 1.00e-89 | 278 |
| MS.gene65817.t1 | AT1G64010 | 47.907 | 215 | 91 | 4 | 170 | 383 | 1 | 195 | 2.27e-61 | 196 |
| MS.gene65817.t1 | AT1G64010 | 46.500 | 200 | 86 | 4 | 185 | 383 | 2 | 181 | 1.16e-53 | 176 |
| MS.gene65817.t1 | AT1G62160 | 42.132 | 197 | 89 | 4 | 192 | 383 | 42 | 218 | 2.25e-34 | 127 |
| MS.gene65817.t1 | AT1G63280 | 54.622 | 119 | 49 | 3 | 126 | 242 | 5 | 120 | 7.50e-34 | 122 |
| MS.gene65817.t1 | AT1G51330 | 48.760 | 121 | 51 | 2 | 103 | 223 | 15 | 124 | 3.66e-26 | 104 |
| MS.gene65817.t1 | AT1G64020 | 29.752 | 121 | 82 | 3 | 1 | 119 | 1 | 120 | 1.78e-12 | 64.3 |
Find 79 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTAATGCACTCTACTTTAA+AGG | 0.141946 | 3.2:+9233260 | MS.gene65817:CDS |
| CGACTAAAGAAGTGAATTTA+TGG | 0.178990 | 3.2:+9233159 | MS.gene65817:CDS |
| TTATCTTTGCCTTTCTTATA+CGG | 0.278481 | 3.2:-9233431 | None:intergenic |
| GAGGAAGAAGTTCTTTAATA+AGG | 0.287252 | 3.2:-9233202 | None:intergenic |
| TCTCCTTCGTCAGTGGTGTA+TGG | 0.338625 | 3.2:+9232431 | MS.gene65817:CDS |
| TCCTGGAGGTTTGACTAAAA+TGG | 0.340112 | 3.2:+9233667 | MS.gene65817:CDS |
| ACTGGAACCATTCTCTTTGT+TGG | 0.359618 | 3.2:+9233872 | MS.gene65817:CDS |
| TATTTCTGATTAGAGAAGAT+TGG | 0.360147 | 3.2:+9233849 | MS.gene65817:CDS |
| AATAAACTGCATCTCCTTGC+TGG | 0.361104 | 3.2:-9233375 | None:intergenic |
| AAAAGATGGCTTGTCGGCTT+TGG | 0.374648 | 3.2:+9233490 | MS.gene65817:CDS |
| AATTCACCTACTTCTTCTTC+AGG | 0.377679 | 3.2:-9233563 | None:intergenic |
| CTTGTCGGCTTTGGTTAATA+AGG | 0.379850 | 3.2:+9233499 | MS.gene65817:CDS |
| GTTAAGCTATCAATTGATCT+TGG | 0.385492 | 3.2:-9233224 | None:intergenic |
| ATCTAATTACGAGGCCACTA+TGG | 0.387391 | 3.2:+9232501 | MS.gene65817:CDS |
| TTCTTTCAAGAACAGATGTT+TGG | 0.393806 | 3.2:-9232212 | None:intergenic |
| TGAAGGAAGGTTGAAGAGAA+AGG | 0.398588 | 3.2:-9232465 | None:intergenic |
| TTCCTTCCAAATGCAAAAGA+TGG | 0.403729 | 3.2:+9233476 | MS.gene65817:CDS |
| TGCATAGGGAAACGTTTGTT+TGG | 0.411227 | 3.2:-9232186 | None:intergenic |
| AGATGACACGATTTCTTTGA+AGG | 0.432418 | 3.2:-9232482 | None:intergenic |
| CTCTCCGATGCTGCTCCCAC+AGG | 0.449677 | 3.2:+9232397 | MS.gene65817:CDS |
| GAAGGAAGGTTGAAGAGAAA+GGG | 0.450222 | 3.2:-9232464 | None:intergenic |
| CTCCTTCGTCAGTGGTGTAT+GGG | 0.456822 | 3.2:+9232432 | MS.gene65817:CDS |
| CTTCGTCTTCCGTATAAGAA+AGG | 0.461270 | 3.2:+9233422 | MS.gene65817:CDS |
| GACTAAAGAAGTGAATTTAT+GGG | 0.462620 | 3.2:+9233160 | MS.gene65817:CDS |
| AGGAAAATGTACATAGAGAA+TGG | 0.462827 | 3.2:-9233458 | None:intergenic |
| TTCATTGAAGTAAATGAAGA+AGG | 0.463233 | 3.2:+9233737 | MS.gene65817:CDS |
| AACAGCTTCTCGACTTCCTC+CGG | 0.467511 | 3.2:+9232320 | MS.gene65817:CDS |
| CTCCTTGCTGGTCATCATGA+AGG | 0.475875 | 3.2:-9233363 | None:intergenic |
| TCCACCTGTGGGAGCAGCAT+CGG | 0.481475 | 3.2:-9232401 | None:intergenic |
| TCTCTAATCAGAAATAAGAA+AGG | 0.483189 | 3.2:-9233842 | None:intergenic |
| TGCATTAGCAAAGATGAGTC+TGG | 0.499282 | 3.2:-9233246 | None:intergenic |
| AAATGCAAAAGATGGCTTGT+CGG | 0.500590 | 3.2:+9233484 | MS.gene65817:CDS |
| CTGATTAGAGAAGATTGGAC+TGG | 0.501644 | 3.2:+9233854 | MS.gene65817:CDS |
| TAGGGAAACGTTTGTTTGGT+TGG | 0.507693 | 3.2:-9232182 | None:intergenic |
| GAAATATTTCAGAAACAGAA+AGG | 0.510094 | 3.2:-9233706 | None:intergenic |
| GTACTAAGCATCATCGCTGC+TGG | 0.510384 | 3.2:+9232277 | MS.gene65817:CDS |
| ATCATCGCTGCTGGCTCTGA+GGG | 0.511801 | 3.2:+9232286 | MS.gene65817:CDS |
| CACTCTACTTTAAAGGAGCA+TGG | 0.514338 | 3.2:+9233267 | MS.gene65817:CDS |
| TCCGATGCTGCTCCCACAGG+TGG | 0.515601 | 3.2:+9232400 | MS.gene65817:CDS |
| TGACCGAGCTGCCATTCAAA+AGG | 0.515686 | 3.2:-9233334 | None:intergenic |
| CTCTAATCAGAAATAAGAAA+GGG | 0.516757 | 3.2:-9233841 | None:intergenic |
| CATCATCGCTGCTGGCTCTG+AGG | 0.516897 | 3.2:+9232285 | MS.gene65817:CDS |
| CAGATGTTTGGCAATGCATA+GGG | 0.522319 | 3.2:-9232200 | None:intergenic |
| GACACGATTTCTTTGAAGGA+AGG | 0.523677 | 3.2:-9232478 | None:intergenic |
| TTTGGTTGGTGATTGATTCA+CGG | 0.528455 | 3.2:-9232168 | None:intergenic |
| CACTTGTCCAACAAAGAGAA+TGG | 0.528533 | 3.2:-9233879 | None:intergenic |
| TTTGAATGGCAGCTCGGTCA+AGG | 0.529731 | 3.2:+9233337 | MS.gene65817:CDS |
| GTCGGCTTTGGTTAATAAGG+TGG | 0.531612 | 3.2:+9233502 | MS.gene65817:CDS |
| AGTCTTCCTGAAGAAGAAGT+AGG | 0.534032 | 3.2:+9233557 | MS.gene65817:CDS |
| AAGCTATCAATTGATCTTGG+AGG | 0.537062 | 3.2:-9233221 | None:intergenic |
| TCTCATATGCTGAAAGAGCT+AGG | 0.539995 | 3.2:+9233626 | MS.gene65817:CDS |
| ACAGATGTTTGGCAATGCAT+AGG | 0.540369 | 3.2:-9232201 | None:intergenic |
| GAAATCAACATAAGCCATAG+TGG | 0.543010 | 3.2:-9232515 | None:intergenic |
| GTCAAACCTCCAGGAGTGAA+AGG | 0.543892 | 3.2:-9233659 | None:intergenic |
| TGCTAAGATCACTGATCAAG+AGG | 0.544299 | 3.2:-9233908 | None:intergenic |
| GATGATCAGTGGATTTAGAC+CGG | 0.555777 | 3.2:-9232339 | None:intergenic |
| TCCTTGCTGGTCATCATGAA+GGG | 0.575420 | 3.2:-9233362 | None:intergenic |
| CCTCGACTCTCCTTCGTCAG+TGG | 0.575802 | 3.2:+9232424 | MS.gene65817:CDS |
| TTATGTTGATTTCATAACCA+AGG | 0.579962 | 3.2:+9232525 | MS.gene65817:CDS |
| GTCGAGAAGCTGTTGTTGTG+TGG | 0.586119 | 3.2:-9232311 | None:intergenic |
| AATCTGAGTTACTACACCAC+AGG | 0.600834 | 3.2:+9233531 | MS.gene65817:CDS |
| TCGAGAAGCTGTTGTTGTGT+GGG | 0.605173 | 3.2:-9232310 | None:intergenic |
| CACGACAGAAACAAGCTGAA+AGG | 0.609451 | 3.2:-9232374 | None:intergenic |
| TGGAGGTTTGACTAAAATGG+TGG | 0.620054 | 3.2:+9233670 | MS.gene65817:CDS |
| TAGTGCTGCAATATGTTCCG+AGG | 0.625856 | 3.2:+9233778 | MS.gene65817:CDS |
| GAGAGTCGAGGTCCACCTGT+GGG | 0.635303 | 3.2:-9232412 | None:intergenic |
| AGTTCGAAATCGAATACCCT+CGG | 0.638336 | 3.2:-9233795 | None:intergenic |
| TAATCAGAAATAAGAAAGGG+TGG | 0.640706 | 3.2:-9233838 | None:intergenic |
| GGAGAGTCGAGGTCCACCTG+TGG | 0.645915 | 3.2:-9232413 | None:intergenic |
| AGTACAATTTGAAGAGACAG+TGG | 0.651894 | 3.2:-9232259 | None:intergenic |
| AGTGCTGCAATATGTTCCGA+GGG | 0.658631 | 3.2:+9233779 | MS.gene65817:CDS |
| AACCCATACACCACTGACGA+AGG | 0.659348 | 3.2:-9232434 | None:intergenic |
| AAGATAGTTGAGATGATCAG+TGG | 0.660413 | 3.2:-9232350 | None:intergenic |
| TCCCTTCATGATGACCAGCA+AGG | 0.667859 | 3.2:+9233361 | MS.gene65817:CDS |
| AATCGTGTCATCTAATTACG+AGG | 0.678044 | 3.2:+9232492 | MS.gene65817:CDS |
| CTTCAGGAAGACTAAACCTG+TGG | 0.690571 | 3.2:-9233547 | None:intergenic |
| TATGCTGAAAGAGCTAGGAG+TGG | 0.693506 | 3.2:+9233631 | MS.gene65817:CDS |
| CCACTGACGAAGGAGAGTCG+AGG | 0.741972 | 3.2:-9232424 | None:intergenic |
| GATCAGTGGATTTAGACCGG+AGG | 0.742435 | 3.2:-9232336 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAAATTTAAAAATCAATTA+TGG | - | chr3.2:9233116-9233135 | None:intergenic | 10.0% |
| !!! | TAAATTTGATATTGTTTTGA+AGG | + | chr3.2:9233127-9233146 | MS.gene65817:intron | 15.0% |
| !!! | TATTTTCCATTTACAATTAA+TGG | + | chr3.2:9232597-9232616 | MS.gene65817:intron | 15.0% |
| !! | ATACCTCAAAATATACAATA+TGG | - | chr3.2:9232897-9232916 | None:intergenic | 20.0% |
| !!! | AATAACATTTGCTCTAAATT+AGG | - | chr3.2:9232662-9232681 | None:intergenic | 20.0% |
| !!! | TCAAATGAAATTTTGAATCT+TGG | - | chr3.2:9233596-9233615 | None:intergenic | 20.0% |
| ! | ACTTATAAGTATAATGCTCT+TGG | + | chr3.2:9232719-9232738 | MS.gene65817:intron | 25.0% |
| ! | ATAAAATAAACTGTTTGCGA+AGG | - | chr3.2:9232628-9232647 | None:intergenic | 25.0% |
| ! | CTCTAATCAGAAATAAGAAA+GGG | - | chr3.2:9233844-9233863 | None:intergenic | 25.0% |
| ! | GAAATATTTCAGAAACAGAA+AGG | - | chr3.2:9233709-9233728 | None:intergenic | 25.0% |
| ! | GACTAAAGAAGTGAATTTAT+GGG | + | chr3.2:9233160-9233179 | MS.gene65817:CDS | 25.0% |
| ! | GTAAATGGAAAATAAAAGCA+GGG | - | chr3.2:9232591-9232610 | None:intergenic | 25.0% |
| ! | GTAGATCCATTAATTGTAAA+TGG | - | chr3.2:9232606-9232625 | None:intergenic | 25.0% |
| ! | TAGAACAAATAGATTCATTC+AGG | - | chr3.2:9233090-9233109 | None:intergenic | 25.0% |
| ! | TCTCTAATCAGAAATAAGAA+AGG | - | chr3.2:9233845-9233864 | None:intergenic | 25.0% |
| ! | TGTAAATGGAAAATAAAAGC+AGG | - | chr3.2:9232592-9232611 | None:intergenic | 25.0% |
| ! | TTATCTTTGCCTTTCTTATA+CGG | - | chr3.2:9233434-9233453 | None:intergenic | 25.0% |
| ! | TTCATTGAAGTAAATGAAGA+AGG | + | chr3.2:9233737-9233756 | MS.gene65817:CDS | 25.0% |
| ! | TTCTTTGATCAATATAGCTT+TGG | - | chr3.2:9232967-9232986 | None:intergenic | 25.0% |
| !! | AAAGTAGGTTCTTCTTTTAA+AGG | + | chr3.2:9232775-9232794 | MS.gene65817:intron | 25.0% |
| !! | TATGATTTTCACCTTTTGAA+TGG | + | chr3.2:9233323-9233342 | MS.gene65817:CDS | 25.0% |
| !! | TATTTCTGATTAGAGAAGAT+TGG | + | chr3.2:9233849-9233868 | MS.gene65817:CDS | 25.0% |
| !! | TGTCCATATTGTATATTTTG+AGG | + | chr3.2:9232891-9232910 | MS.gene65817:intron | 25.0% |
| !!! | GTTATTTTACTTTTGAAGCA+TGG | + | chr3.2:9232676-9232695 | MS.gene65817:intron | 25.0% |
| !!! | TTATGTTGATTTCATAACCA+AGG | + | chr3.2:9232525-9232544 | MS.gene65817:CDS | 25.0% |
| AGGAAAATGTACATAGAGAA+TGG | - | chr3.2:9233461-9233480 | None:intergenic | 30.0% | |
| CAGTGCTATAAAATTTGAAG+AGG | - | chr3.2:9233027-9233046 | None:intergenic | 30.0% | |
| CGACTAAAGAAGTGAATTTA+TGG | + | chr3.2:9233159-9233178 | MS.gene65817:CDS | 30.0% | |
| GAGGAAGAAGTTCTTTAATA+AGG | - | chr3.2:9233205-9233224 | None:intergenic | 30.0% | |
| GTATATTTCAGCACAAAGTA+GGG | + | chr3.2:9232852-9232871 | MS.gene65817:intron | 30.0% | |
| GTTAAGCTATCAATTGATCT+TGG | - | chr3.2:9233227-9233246 | None:intergenic | 30.0% | |
| TAATCAGAAATAAGAAAGGG+TGG | - | chr3.2:9233841-9233860 | None:intergenic | 30.0% | |
| TCAGGAAGAAATTATGCTAA+AGG | - | chr3.2:9233072-9233091 | None:intergenic | 30.0% | |
| TGCTCTTGGAATTTATTTGA+CGG | + | chr3.2:9232733-9232752 | MS.gene65817:intron | 30.0% | |
| TGTATATTTCAGCACAAAGT+AGG | + | chr3.2:9232851-9232870 | MS.gene65817:intron | 30.0% | |
| TTCTTTCAAGAACAGATGTT+TGG | - | chr3.2:9232215-9232234 | None:intergenic | 30.0% | |
| !! | CAAAAGTTTTGTCACATACA+TGG | - | chr3.2:9232993-9233012 | None:intergenic | 30.0% |
| AAGATAGTTGAGATGATCAG+TGG | - | chr3.2:9232353-9232372 | None:intergenic | 35.0% | |
| AAGCTATCAATTGATCTTGG+AGG | - | chr3.2:9233224-9233243 | None:intergenic | 35.0% | |
| AATCGTGTCATCTAATTACG+AGG | + | chr3.2:9232492-9232511 | MS.gene65817:CDS | 35.0% | |
| AATTCACCTACTTCTTCTTC+AGG | - | chr3.2:9233566-9233585 | None:intergenic | 35.0% | |
| AGATGACACGATTTCTTTGA+AGG | - | chr3.2:9232485-9232504 | None:intergenic | 35.0% | |
| AGTACAATTTGAAGAGACAG+TGG | - | chr3.2:9232262-9232281 | None:intergenic | 35.0% | |
| CTGATTCTAGTGTAGAAAGT+AGG | + | chr3.2:9232760-9232779 | MS.gene65817:intron | 35.0% | |
| GAAATCAACATAAGCCATAG+TGG | - | chr3.2:9232518-9232537 | None:intergenic | 35.0% | |
| GCTAATGCACTCTACTTTAA+AGG | + | chr3.2:9233260-9233279 | MS.gene65817:CDS | 35.0% | |
| TTCCTTCCAAATGCAAAAGA+TGG | + | chr3.2:9233476-9233495 | MS.gene65817:CDS | 35.0% | |
| ! | AAATGCAAAAGATGGCTTGT+CGG | + | chr3.2:9233484-9233503 | MS.gene65817:CDS | 35.0% |
| !! | TTTGGTTGGTGATTGATTCA+CGG | - | chr3.2:9232171-9232190 | None:intergenic | 35.0% |
| AATAAACTGCATCTCCTTGC+TGG | - | chr3.2:9233378-9233397 | None:intergenic | 40.0% | |
| AATCTGAGTTACTACACCAC+AGG | + | chr3.2:9233531-9233550 | MS.gene65817:CDS | 40.0% | |
| ACAGATGTTTGGCAATGCAT+AGG | - | chr3.2:9232204-9232223 | None:intergenic | 40.0% | |
| ACTGGAACCATTCTCTTTGT+TGG | + | chr3.2:9233872-9233891 | MS.gene65817:CDS | 40.0% | |
| AGGATGAAGTGTGTGATTCA+TGG | + | chr3.2:9232795-9232814 | MS.gene65817:intron | 40.0% | |
| AGTCTTCCTGAAGAAGAAGT+AGG | + | chr3.2:9233557-9233576 | MS.gene65817:CDS | 40.0% | |
| AGTTCGAAATCGAATACCCT+CGG | - | chr3.2:9233798-9233817 | None:intergenic | 40.0% | |
| ATCTAATTACGAGGCCACTA+TGG | + | chr3.2:9232501-9232520 | MS.gene65817:CDS | 40.0% | |
| CACTTGTCCAACAAAGAGAA+TGG | - | chr3.2:9233882-9233901 | None:intergenic | 40.0% | |
| CAGATGTTTGGCAATGCATA+GGG | - | chr3.2:9232203-9232222 | None:intergenic | 40.0% | |
| CTGATTAGAGAAGATTGGAC+TGG | + | chr3.2:9233854-9233873 | MS.gene65817:CDS | 40.0% | |
| CTTCGTCTTCCGTATAAGAA+AGG | + | chr3.2:9233422-9233441 | MS.gene65817:CDS | 40.0% | |
| GAAGGAAGGTTGAAGAGAAA+GGG | - | chr3.2:9232467-9232486 | None:intergenic | 40.0% | |
| TAGGGAAACGTTTGTTTGGT+TGG | - | chr3.2:9232185-9232204 | None:intergenic | 40.0% | |
| TCCTGGAGGTTTGACTAAAA+TGG | + | chr3.2:9233667-9233686 | MS.gene65817:CDS | 40.0% | |
| TCTCATATGCTGAAAGAGCT+AGG | + | chr3.2:9233626-9233645 | MS.gene65817:CDS | 40.0% | |
| TGAAGGAAGGTTGAAGAGAA+AGG | - | chr3.2:9232468-9232487 | None:intergenic | 40.0% | |
| TGCATAGGGAAACGTTTGTT+TGG | - | chr3.2:9232189-9232208 | None:intergenic | 40.0% | |
| TGCATTAGCAAAGATGAGTC+TGG | - | chr3.2:9233249-9233268 | None:intergenic | 40.0% | |
| TGGAAAATAAAAGCAGGGCA+TGG | - | chr3.2:9232586-9232605 | None:intergenic | 40.0% | |
| TGGAGGTTTGACTAAAATGG+TGG | + | chr3.2:9233670-9233689 | MS.gene65817:CDS | 40.0% | |
| TGGGCTGAAAAAGAGACAAA+TGG | + | chr3.2:9233179-9233198 | MS.gene65817:CDS | 40.0% | |
| ! | AGCCATCTTTTGCATTTGGA+AGG | - | chr3.2:9233481-9233500 | None:intergenic | 40.0% |
| ! | CACTCTACTTTAAAGGAGCA+TGG | + | chr3.2:9233267-9233286 | MS.gene65817:CDS | 40.0% |
| ! | GACAAGCCATCTTTTGCATT+TGG | - | chr3.2:9233485-9233504 | None:intergenic | 40.0% |
| ! | GACACGATTTCTTTGAAGGA+AGG | - | chr3.2:9232481-9232500 | None:intergenic | 40.0% |
| ! | GATGATCAGTGGATTTAGAC+CGG | - | chr3.2:9232342-9232361 | None:intergenic | 40.0% |
| !! | ACCATTTTAGTCAAACCTCC+AGG | - | chr3.2:9233671-9233690 | None:intergenic | 40.0% |
| !! | CTTGTCGGCTTTGGTTAATA+AGG | + | chr3.2:9233499-9233518 | MS.gene65817:CDS | 40.0% |
| AGTGCTGCAATATGTTCCGA+GGG | + | chr3.2:9233779-9233798 | MS.gene65817:CDS | 45.0% | |
| CACGACAGAAACAAGCTGAA+AGG | - | chr3.2:9232377-9232396 | None:intergenic | 45.0% | |
| CTTCAGGAAGACTAAACCTG+TGG | - | chr3.2:9233550-9233569 | None:intergenic | 45.0% | |
| TAGTGCTGCAATATGTTCCG+AGG | + | chr3.2:9233778-9233797 | MS.gene65817:CDS | 45.0% | |
| TATGCTGAAAGAGCTAGGAG+TGG | + | chr3.2:9233631-9233650 | MS.gene65817:CDS | 45.0% | |
| TCCTTGCTGGTCATCATGAA+GGG | - | chr3.2:9233365-9233384 | None:intergenic | 45.0% | |
| TCGAGAAGCTGTTGTTGTGT+GGG | - | chr3.2:9232313-9232332 | None:intergenic | 45.0% | |
| ! | AGGGCATGGATTGAAAGAGT+GGG | - | chr3.2:9232572-9232591 | None:intergenic | 45.0% |
| ! | ATGGATTGAAAGAGTGGGGT+GGG | - | chr3.2:9232567-9232586 | None:intergenic | 45.0% |
| ! | GTCGGCTTTGGTTAATAAGG+TGG | + | chr3.2:9233502-9233521 | MS.gene65817:CDS | 45.0% |
| ! | GTTTTACCTTTCACTCCTGG+AGG | + | chr3.2:9233653-9233672 | MS.gene65817:CDS | 45.0% |
| ! | TCACCTTTTGAATGGCAGCT+CGG | + | chr3.2:9233331-9233350 | MS.gene65817:CDS | 45.0% |
| !! | AAAAGATGGCTTGTCGGCTT+TGG | + | chr3.2:9233490-9233509 | MS.gene65817:CDS | 45.0% |
| !! | GTGGTTTTACCTTTCACTCC+TGG | + | chr3.2:9233650-9233669 | MS.gene65817:CDS | 45.0% |
| AACAGCTTCTCGACTTCCTC+CGG | + | chr3.2:9232320-9232339 | MS.gene65817:CDS | 50.0% | |
| AACCCATACACCACTGACGA+AGG | - | chr3.2:9232437-9232456 | None:intergenic | 50.0% | |
| CTCCTTCGTCAGTGGTGTAT+GGG | + | chr3.2:9232432-9232451 | MS.gene65817:CDS | 50.0% | |
| CTCCTTGCTGGTCATCATGA+AGG | - | chr3.2:9233366-9233385 | None:intergenic | 50.0% | |
| GGGGGTAGACAAACATACCT+TGG | - | chr3.2:9232545-9232564 | None:intergenic | 50.0% | |
| GTACTAAGCATCATCGCTGC+TGG | + | chr3.2:9232277-9232296 | MS.gene65817:CDS | 50.0% | |
| GTCAAACCTCCAGGAGTGAA+AGG | - | chr3.2:9233662-9233681 | None:intergenic | 50.0% | |
| GTCGAGAAGCTGTTGTTGTG+TGG | - | chr3.2:9232314-9232333 | None:intergenic | 50.0% | |
| TCCCTTCATGATGACCAGCA+AGG | + | chr3.2:9233361-9233380 | MS.gene65817:CDS | 50.0% | |
| TCTCCTTCGTCAGTGGTGTA+TGG | + | chr3.2:9232431-9232450 | MS.gene65817:CDS | 50.0% | |
| TGACCGAGCTGCCATTCAAA+AGG | - | chr3.2:9233337-9233356 | None:intergenic | 50.0% | |
| TGGATTGAAAGAGTGGGGTG+GGG | - | chr3.2:9232566-9232585 | None:intergenic | 50.0% | |
| TTTGAATGGCAGCTCGGTCA+AGG | + | chr3.2:9233337-9233356 | MS.gene65817:CDS | 50.0% | |
| ! | CAGGGCATGGATTGAAAGAG+TGG | - | chr3.2:9232573-9232592 | None:intergenic | 50.0% |
| ! | CATGGATTGAAAGAGTGGGG+TGG | - | chr3.2:9232568-9232587 | None:intergenic | 50.0% |
| ! | GATCAGTGGATTTAGACCGG+AGG | - | chr3.2:9232339-9232358 | None:intergenic | 50.0% |
| ! | GGGCATGGATTGAAAGAGTG+GGG | - | chr3.2:9232571-9232590 | None:intergenic | 50.0% |
| ATTGAAAGAGTGGGGTGGGG+GGG | - | chr3.2:9232563-9232582 | None:intergenic | 55.0% | |
| GATTGAAAGAGTGGGGTGGG+GGG | - | chr3.2:9232564-9232583 | None:intergenic | 55.0% | |
| GGATTGAAAGAGTGGGGTGG+GGG | - | chr3.2:9232565-9232584 | None:intergenic | 55.0% | |
| !! | ATCATCGCTGCTGGCTCTGA+GGG | + | chr3.2:9232286-9232305 | MS.gene65817:CDS | 55.0% |
| CCACTGACGAAGGAGAGTCG+AGG | - | chr3.2:9232427-9232446 | None:intergenic | 60.0% | |
| CCTCGACTCTCCTTCGTCAG+TGG | + | chr3.2:9232424-9232443 | MS.gene65817:CDS | 60.0% | |
| GAGAGTCGAGGTCCACCTGT+GGG | - | chr3.2:9232415-9232434 | None:intergenic | 60.0% | |
| TCCACCTGTGGGAGCAGCAT+CGG | - | chr3.2:9232404-9232423 | None:intergenic | 60.0% | |
| !! | CATCATCGCTGCTGGCTCTG+AGG | + | chr3.2:9232285-9232304 | MS.gene65817:CDS | 60.0% |
| CTCTCCGATGCTGCTCCCAC+AGG | + | chr3.2:9232397-9232416 | MS.gene65817:CDS | 65.0% | |
| GGAGAGTCGAGGTCCACCTG+TGG | - | chr3.2:9232416-9232435 | None:intergenic | 65.0% | |
| TCCGATGCTGCTCCCACAGG+TGG | + | chr3.2:9232400-9232419 | MS.gene65817:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 9232160 | 9233922 | 9232160 | ID=MS.gene65817 |
| chr3.2 | mRNA | 9232160 | 9233922 | 9232160 | ID=MS.gene65817.t1;Parent=MS.gene65817 |
| chr3.2 | exon | 9232160 | 9232546 | 9232160 | ID=MS.gene65817.t1.exon1;Parent=MS.gene65817.t1 |
| chr3.2 | CDS | 9232160 | 9232546 | 9232160 | ID=cds.MS.gene65817.t1;Parent=MS.gene65817.t1 |
| chr3.2 | exon | 9233149 | 9233922 | 9233149 | ID=MS.gene65817.t1.exon2;Parent=MS.gene65817.t1 |
| chr3.2 | CDS | 9233149 | 9233922 | 9233149 | ID=cds.MS.gene65817.t1;Parent=MS.gene65817.t1 |
| Gene Sequence |
| Protein sequence |
