Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene66037.t1 | PNX98457.1 | 82.5 | 211 | 33 | 2 | 11 | 220 | 2 | 209 | 1.30E-95 | 359.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene66037.t1 | Q9FPT1 | 33.1 | 139 | 85 | 3 | 30 | 168 | 53 | 183 | 1.9e-15 | 84.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene66037.t1 | A0A2K3N5Y4 | 82.5 | 211 | 33 | 2 | 11 | 220 | 2 | 209 | 9.1e-96 | 359.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049239 | MS.gene66037 | 0.815372 | 9.56E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene66037.t1 | MTR_4g123750 | 43.005 | 193 | 105 | 2 | 28 | 215 | 14 | 206 | 6.96e-45 | 152 |
MS.gene66037.t1 | MTR_8g006190 | 37.838 | 185 | 97 | 4 | 49 | 215 | 5 | 189 | 5.86e-35 | 129 |
MS.gene66037.t1 | MTR_1g110530 | 46.104 | 154 | 30 | 4 | 11 | 157 | 2 | 109 | 7.84e-31 | 110 |
MS.gene66037.t1 | MTR_8g006190 | 36.686 | 169 | 89 | 4 | 66 | 216 | 14 | 182 | 1.28e-28 | 112 |
MS.gene66037.t1 | MTR_5g091180 | 35.252 | 139 | 83 | 4 | 26 | 164 | 39 | 170 | 6.73e-21 | 91.3 |
MS.gene66037.t1 | MTR_1g042160 | 29.078 | 141 | 94 | 3 | 32 | 172 | 12 | 146 | 1.05e-20 | 88.6 |
MS.gene66037.t1 | MTR_5g086700 | 32.353 | 136 | 84 | 3 | 31 | 166 | 59 | 186 | 7.90e-20 | 88.2 |
MS.gene66037.t1 | MTR_5g086700 | 32.353 | 136 | 84 | 3 | 31 | 166 | 59 | 186 | 8.29e-20 | 88.2 |
MS.gene66037.t1 | MTR_1g041240 | 31.655 | 139 | 86 | 3 | 30 | 168 | 55 | 184 | 6.00e-19 | 85.5 |
MS.gene66037.t1 | MTR_1g041240 | 31.655 | 139 | 86 | 3 | 30 | 168 | 56 | 185 | 6.00e-19 | 85.5 |
MS.gene66037.t1 | MTR_1g041240 | 31.655 | 139 | 86 | 3 | 30 | 168 | 54 | 183 | 6.23e-19 | 85.5 |
MS.gene66037.t1 | MTR_3g079840 | 30.986 | 142 | 90 | 3 | 30 | 171 | 54 | 187 | 1.22e-18 | 84.7 |
MS.gene66037.t1 | MTR_3g079840 | 30.986 | 142 | 90 | 3 | 30 | 171 | 53 | 186 | 1.27e-18 | 84.7 |
MS.gene66037.t1 | MTR_5g091450 | 32.836 | 134 | 83 | 3 | 31 | 164 | 31 | 157 | 2.47e-18 | 83.6 |
MS.gene66037.t1 | MTR_5g091550 | 35.878 | 131 | 76 | 4 | 34 | 164 | 20 | 142 | 5.86e-15 | 73.6 |
MS.gene66037.t1 | MTR_5g091550 | 35.878 | 131 | 76 | 4 | 34 | 164 | 20 | 142 | 6.12e-15 | 73.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene66037.t1 | AT3G17380 | 46.597 | 191 | 98 | 3 | 29 | 216 | 17 | 206 | 4.76e-51 | 168 |
MS.gene66037.t1 | AT3G20370 | 39.394 | 198 | 114 | 5 | 20 | 213 | 51 | 246 | 4.05e-35 | 128 |
MS.gene66037.t1 | AT3G20370 | 39.394 | 198 | 114 | 5 | 20 | 213 | 73 | 268 | 5.18e-35 | 128 |
MS.gene66037.t1 | AT5G26280 | 36.842 | 190 | 118 | 2 | 27 | 215 | 55 | 243 | 7.70e-33 | 122 |
MS.gene66037.t1 | AT5G26280 | 36.842 | 190 | 118 | 2 | 27 | 215 | 74 | 262 | 8.14e-33 | 122 |
MS.gene66037.t1 | AT5G26260 | 34.848 | 198 | 127 | 2 | 19 | 215 | 48 | 244 | 1.81e-32 | 120 |
MS.gene66037.t1 | AT5G26320 | 35.417 | 192 | 120 | 3 | 27 | 215 | 55 | 245 | 6.79e-32 | 119 |
MS.gene66037.t1 | AT5G26290 | 35.789 | 190 | 120 | 2 | 27 | 215 | 48 | 236 | 1.19e-31 | 118 |
MS.gene66037.t1 | AT2G15710 | 35.417 | 192 | 118 | 4 | 27 | 215 | 94 | 282 | 3.24e-29 | 112 |
MS.gene66037.t1 | AT4G09770 | 34.031 | 191 | 120 | 4 | 27 | 215 | 5 | 191 | 1.10e-28 | 108 |
MS.gene66037.t1 | AT4G09770 | 34.031 | 191 | 120 | 4 | 27 | 215 | 31 | 217 | 1.84e-28 | 108 |
MS.gene66037.t1 | AT3G20360 | 31.925 | 213 | 140 | 5 | 7 | 215 | 41 | 252 | 2.72e-28 | 110 |
MS.gene66037.t1 | AT4G09770 | 34.031 | 191 | 120 | 4 | 27 | 215 | 5 | 191 | 3.04e-28 | 108 |
MS.gene66037.t1 | AT4G09770 | 34.031 | 191 | 120 | 4 | 27 | 215 | 5 | 191 | 3.04e-28 | 108 |
MS.gene66037.t1 | AT4G09770 | 34.031 | 191 | 120 | 4 | 27 | 215 | 31 | 217 | 4.26e-28 | 108 |
MS.gene66037.t1 | AT5G26300 | 34.737 | 190 | 121 | 3 | 27 | 215 | 55 | 242 | 4.50e-28 | 109 |
MS.gene66037.t1 | AT1G58270 | 34.010 | 197 | 119 | 4 | 27 | 215 | 90 | 283 | 1.53e-27 | 108 |
MS.gene66037.t1 | AT2G04170 | 36.316 | 190 | 119 | 2 | 27 | 215 | 3 | 191 | 1.70e-27 | 106 |
MS.gene66037.t1 | AT2G04170 | 36.316 | 190 | 119 | 2 | 27 | 215 | 3 | 191 | 1.70e-27 | 106 |
MS.gene66037.t1 | AT2G04170 | 36.316 | 190 | 119 | 2 | 27 | 215 | 125 | 313 | 5.88e-27 | 106 |
MS.gene66037.t1 | AT3G28220 | 34.715 | 193 | 122 | 4 | 27 | 215 | 76 | 268 | 6.02e-27 | 106 |
MS.gene66037.t1 | AT2G04170 | 36.316 | 190 | 119 | 2 | 27 | 215 | 85 | 273 | 6.37e-27 | 106 |
MS.gene66037.t1 | AT2G04170 | 36.170 | 188 | 118 | 2 | 27 | 213 | 125 | 311 | 9.39e-27 | 105 |
MS.gene66037.t1 | AT2G04170 | 36.316 | 190 | 119 | 2 | 27 | 215 | 125 | 313 | 9.87e-27 | 106 |
MS.gene66037.t1 | AT2G04170 | 36.316 | 190 | 119 | 2 | 27 | 215 | 125 | 313 | 9.87e-27 | 106 |
MS.gene66037.t1 | AT4G09780 | 33.508 | 191 | 122 | 4 | 27 | 215 | 58 | 245 | 1.77e-25 | 103 |
MS.gene66037.t1 | AT4G09780 | 33.862 | 189 | 120 | 4 | 27 | 213 | 58 | 243 | 1.91e-25 | 103 |
MS.gene66037.t1 | AT3G20380 | 31.088 | 193 | 126 | 2 | 28 | 216 | 83 | 272 | 5.47e-25 | 101 |
MS.gene66037.t1 | AT3G22080 | 29.327 | 208 | 140 | 5 | 15 | 215 | 2 | 209 | 5.83e-25 | 100 |
MS.gene66037.t1 | AT3G22085 | 30.392 | 204 | 113 | 6 | 18 | 215 | 5 | 185 | 8.08e-24 | 97.1 |
MS.gene66037.t1 | AT2G04190 | 33.508 | 191 | 124 | 3 | 27 | 215 | 115 | 304 | 1.88e-23 | 97.4 |
MS.gene66037.t1 | AT1G65150 | 31.414 | 191 | 116 | 5 | 27 | 215 | 15 | 192 | 4.21e-22 | 92.4 |
MS.gene66037.t1 | AT1G65150 | 31.414 | 191 | 116 | 5 | 27 | 215 | 15 | 192 | 4.21e-22 | 92.4 |
MS.gene66037.t1 | AT5G26280 | 32.632 | 190 | 103 | 3 | 27 | 215 | 55 | 220 | 5.33e-22 | 92.4 |
MS.gene66037.t1 | AT4G00780 | 30.455 | 220 | 125 | 8 | 3 | 216 | 1 | 198 | 6.12e-21 | 89.4 |
MS.gene66037.t1 | AT1G65050 | 34.375 | 128 | 76 | 2 | 27 | 154 | 15 | 134 | 1.70e-20 | 85.1 |
MS.gene66037.t1 | AT1G65050 | 34.375 | 128 | 76 | 2 | 27 | 154 | 15 | 134 | 1.70e-20 | 85.1 |
MS.gene66037.t1 | AT4G01390 | 31.915 | 188 | 111 | 6 | 34 | 215 | 22 | 198 | 1.97e-19 | 85.1 |
MS.gene66037.t1 | AT5G06600 | 31.098 | 164 | 102 | 5 | 8 | 168 | 28 | 183 | 7.59e-19 | 85.5 |
MS.gene66037.t1 | AT5G06600 | 31.098 | 164 | 102 | 5 | 8 | 168 | 27 | 182 | 7.96e-19 | 85.5 |
MS.gene66037.t1 | AT5G06600 | 31.098 | 164 | 102 | 5 | 8 | 168 | 28 | 183 | 8.99e-19 | 85.1 |
MS.gene66037.t1 | AT3G11910 | 31.429 | 140 | 87 | 4 | 30 | 168 | 50 | 181 | 9.55e-17 | 79.3 |
MS.gene66037.t1 | AT3G11910 | 31.429 | 140 | 87 | 4 | 30 | 168 | 50 | 181 | 9.55e-17 | 79.3 |
MS.gene66037.t1 | AT3G11910 | 31.429 | 140 | 87 | 4 | 30 | 168 | 51 | 182 | 9.55e-17 | 79.3 |
MS.gene66037.t1 | AT3G11910 | 31.429 | 140 | 87 | 4 | 30 | 168 | 51 | 182 | 9.55e-17 | 79.3 |
MS.gene66037.t1 | AT1G65370 | 30.000 | 140 | 77 | 5 | 84 | 215 | 1 | 127 | 7.52e-13 | 65.9 |
MS.gene66037.t1 | AT1G69660 | 31.092 | 119 | 80 | 2 | 99 | 215 | 8 | 126 | 5.98e-12 | 63.5 |
MS.gene66037.t1 | AT3G46190 | 28.351 | 194 | 105 | 6 | 27 | 215 | 28 | 192 | 1.02e-11 | 63.5 |
MS.gene66037.t1 | AT1G69650 | 30.460 | 174 | 83 | 8 | 13 | 177 | 4 | 148 | 1.40e-11 | 63.2 |
MS.gene66037.t1 | AT3G46190 | 29.082 | 196 | 101 | 8 | 27 | 215 | 48 | 212 | 1.76e-11 | 63.2 |
Find 51 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAATCAATAGGTAATGAAAT+TGG | 0.139287 | 7.3:+45507633 | None:intergenic |
TGGCCACGTTTCTATTTATT+TGG | 0.172284 | 7.3:-45507667 | MS.gene66037:CDS |
GTCCTTCTCTTTGCTTTCTA+AGG | 0.213307 | 7.3:-45507951 | MS.gene66037:CDS |
GTGTCAATGTTGATGAAATT+TGG | 0.232113 | 7.3:+45507147 | None:intergenic |
GGATAAGCAATCGCCTTTAT+TGG | 0.263509 | 7.3:+45507047 | None:intergenic |
AATAGTGACAGGATTTATTA+TGG | 0.278861 | 7.3:+45507026 | None:intergenic |
TTTATATGAATCACCTTTCA+TGG | 0.305529 | 7.3:+45508272 | None:intergenic |
TCTTATTACTAGCTTGTTGT+AGG | 0.321058 | 7.3:-45506887 | None:intergenic |
TTCTATTTATTTGGCAATCA+TGG | 0.321583 | 7.3:-45507658 | MS.gene66037:CDS |
CAATTTCATTACCTATTGAT+TGG | 0.338977 | 7.3:-45507632 | MS.gene66037:CDS |
ATATGCTGAAAAGTTTATAA+TGG | 0.340449 | 7.3:+45507599 | None:intergenic |
TTCATATCCTTGGTAGGAAA+TGG | 0.382333 | 7.3:+45508324 | None:intergenic |
TTGTAGCTGGAGACTATAAA+TGG | 0.384295 | 7.3:-45506939 | MS.gene66037:CDS |
AGCTTGTCTATATACCCATC+TGG | 0.388009 | 7.3:-45507711 | MS.gene66037:CDS |
AATTTCATTACCTATTGATT+GGG | 0.420880 | 7.3:-45507631 | MS.gene66037:CDS |
TTCCTCTCTGTGTTCCCAGA+TGG | 0.430780 | 7.3:+45507696 | None:intergenic |
AATCAATAGGTAATGAAATT+GGG | 0.431396 | 7.3:+45507634 | None:intergenic |
CCCTACAAAAGGATATTTGT+TGG | 0.450408 | 7.3:-45507115 | MS.gene66037:CDS |
TCCTCTCTGTGTTCCCAGAT+GGG | 0.451582 | 7.3:+45507697 | None:intergenic |
GCATTGATCTCCCAATCAAT+AGG | 0.467061 | 7.3:+45507621 | None:intergenic |
TTTGCAAAATTTCCAGCTGT+GGG | 0.488078 | 7.3:+45507002 | None:intergenic |
ATTTGCAAAATTTCCAGCTG+TGG | 0.490568 | 7.3:+45507001 | None:intergenic |
CTGTCACTATTTCCCACAGC+TGG | 0.497615 | 7.3:-45507014 | MS.gene66037:CDS |
GTTGTGAAGACTGCCAATAA+AGG | 0.497899 | 7.3:-45507060 | MS.gene66037:CDS |
GAGTCGGAATCCTTTGTAGC+TGG | 0.507263 | 7.3:-45506952 | MS.gene66037:CDS |
TTGAAGCTGGAGGTTACAAA+TGG | 0.507558 | 7.3:-45507898 | MS.gene66037:intron |
CAGCTGTGGGAAATAGTGAC+AGG | 0.517244 | 7.3:+45507015 | None:intergenic |
ACAAACACAATTCATATCCT+TGG | 0.519835 | 7.3:+45508314 | None:intergenic |
GTCTCGGAAGAGTTTGAAGC+TGG | 0.523075 | 7.3:-45507911 | MS.gene66037:CDS |
AACATGCAGATGCATCTGTT+AGG | 0.533883 | 7.3:-45507203 | MS.gene66037:intron |
TGAATCACCTTTCATGGGTG+TGG | 0.537773 | 7.3:+45508278 | None:intergenic |
TTATATGAATCACCTTTCAT+GGG | 0.539533 | 7.3:+45508273 | None:intergenic |
ACATTCAAAGACCCTACAAA+AGG | 0.543496 | 7.3:-45507126 | MS.gene66037:CDS |
TTTATAGTCTCCAGCTACAA+AGG | 0.550212 | 7.3:+45506942 | None:intergenic |
TCATGTCCTGAAAACAGAGT+GGG | 0.562047 | 7.3:-45507175 | MS.gene66037:CDS |
TTGAATGTGTAATGACTTGG+CGG | 0.569734 | 7.3:+45507980 | None:intergenic |
GGCCTTAGAAAGCAAAGAGA+AGG | 0.575991 | 7.3:+45507949 | None:intergenic |
ACACAATTCATATCCTTGGT+AGG | 0.597401 | 7.3:+45508318 | None:intergenic |
GTCTACTCCATTTCCTACCA+AGG | 0.597539 | 7.3:-45508331 | MS.gene66037:CDS |
GATGAATACGTTACAACTCA+AGG | 0.603967 | 7.3:-45507564 | MS.gene66037:intron |
GCTTGTCTATATACCCATCT+GGG | 0.606052 | 7.3:-45507710 | MS.gene66037:CDS |
TTGTCTACCACACCCATGAA+AGG | 0.611440 | 7.3:-45508285 | MS.gene66037:intron |
TCTGGGAACACAGAGAGGAA+TGG | 0.613084 | 7.3:-45507693 | MS.gene66037:CDS |
TCGGAAGAGTTTGAAGCTGG+AGG | 0.615592 | 7.3:-45507908 | MS.gene66037:CDS |
TTCATGTCCTGAAAACAGAG+TGG | 0.637299 | 7.3:-45507176 | MS.gene66037:CDS |
AAATTTAGACAAGTACGAGT+CGG | 0.642137 | 7.3:-45506968 | MS.gene66037:CDS |
ACCCATCTGGGAACACAGAG+AGG | 0.643127 | 7.3:-45507698 | MS.gene66037:CDS |
CATGTCCTGAAAACAGAGTG+GGG | 0.661266 | 7.3:-45507174 | MS.gene66037:CDS |
ATGGGTGTGGTAGACAACAA+TGG | 0.666956 | 7.3:+45508291 | None:intergenic |
AACACAGAGAGGAATGGACA+TGG | 0.678970 | 7.3:-45507687 | MS.gene66037:CDS |
TTGCCAAATAAATAGAAACG+TGG | 0.730686 | 7.3:+45507664 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TAATTTTTTAATATCTTTTC+AGG | - | chr7.3:45507944-45507963 | MS.gene66037:CDS | 10.0% |
!!! | TATGTATGATATAAATTTTA+AGG | - | chr7.3:45507738-45507757 | MS.gene66037:intron | 10.0% |
!! | ATGATATTTAATCATTAACT+TGG | + | chr7.3:45507860-45507879 | None:intergenic | 15.0% |
!! | TTTATAAGTAGTATAAGATA+AGG | + | chr7.3:45507994-45508013 | None:intergenic | 15.0% |
!!! | TATGATATAAATTTTAAGGT+TGG | - | chr7.3:45507742-45507761 | MS.gene66037:intron | 15.0% |
!!! | TTTATATTGATATCTTTTAC+AGG | - | chr7.3:45507214-45507233 | MS.gene66037:intron | 15.0% |
!! | AATCAATAGGTAATGAAATT+GGG | + | chr7.3:45507596-45507615 | None:intergenic | 20.0% |
!! | AATGGTATGTAAATGTATTT+AGG | - | chr7.3:45507347-45507366 | MS.gene66037:intron | 20.0% |
!! | AGATTAGATACATTAAAAGA+AGG | - | chr7.3:45507151-45507170 | MS.gene66037:CDS | 20.0% |
!! | ATATGCTGAAAAGTTTATAA+TGG | + | chr7.3:45507631-45507650 | None:intergenic | 20.0% |
!!! | AATTTCATTACCTATTGATT+GGG | - | chr7.3:45507596-45507615 | MS.gene66037:CDS | 20.0% |
! | AATAGTGACAGGATTTATTA+TGG | + | chr7.3:45508204-45508223 | None:intergenic | 25.0% |
! | CAATCAATAGGTAATGAAAT+TGG | + | chr7.3:45507597-45507616 | None:intergenic | 25.0% |
! | CAATTTCATTACCTATTGAT+TGG | - | chr7.3:45507595-45507614 | MS.gene66037:CDS | 25.0% |
! | GTTATATATTCTGTTAGGTT+TGG | - | chr7.3:45507764-45507783 | MS.gene66037:intron | 25.0% |
! | TGATTCATATAAACAACAGT+TGG | - | chr7.3:45506965-45506984 | MS.gene66037:CDS | 25.0% |
! | TGTATTTAGGCCTTAAATAA+TGG | - | chr7.3:45507360-45507379 | MS.gene66037:intron | 25.0% |
! | TTAGATACATTAAAAGAAGG+TGG | - | chr7.3:45507154-45507173 | MS.gene66037:CDS | 25.0% |
! | TTATATGAATCACCTTTCAT+GGG | + | chr7.3:45506957-45506976 | None:intergenic | 25.0% |
! | TTCTATTTATTTGGCAATCA+TGG | - | chr7.3:45507569-45507588 | MS.gene66037:CDS | 25.0% |
! | TTTATATGAATCACCTTTCA+TGG | + | chr7.3:45506958-45506977 | None:intergenic | 25.0% |
!! | ATTTTGAATGTGTAATGACT+TGG | + | chr7.3:45507253-45507272 | None:intergenic | 25.0% |
!! | TATTGATATCTTTTACAGGA+AGG | - | chr7.3:45507218-45507237 | MS.gene66037:intron | 25.0% |
!! | TTGGATGATAATTGTGTTTT+TGG | - | chr7.3:45508131-45508150 | MS.gene66037:intron | 25.0% |
!!! | ACTTTTTCGATTTAGTACTT+AGG | + | chr7.3:45507105-45507124 | None:intergenic | 25.0% |
!!! | CTTTTTCGATTTAGTACTTA+GGG | + | chr7.3:45507104-45507123 | None:intergenic | 25.0% |
!!! | TTGACATGAGCTATTTTATA+GGG | - | chr7.3:45507899-45507918 | MS.gene66037:CDS | 25.0% |
AAATTTAGACAAGTACGAGT+CGG | - | chr7.3:45508259-45508278 | MS.gene66037:intron | 30.0% | |
ACAAACACAATTCATATCCT+TGG | + | chr7.3:45506916-45506935 | None:intergenic | 30.0% | |
TTCTTGCTGACCATTATTTA+AGG | + | chr7.3:45507373-45507392 | None:intergenic | 30.0% | |
TTGCCAAATAAATAGAAACG+TGG | + | chr7.3:45507566-45507585 | None:intergenic | 30.0% | |
! | CCAACAAATATCCTTTTGTA+GGG | + | chr7.3:45508115-45508134 | None:intergenic | 30.0% |
! | GGTTGGTTATATATTCTGTT+AGG | - | chr7.3:45507759-45507778 | MS.gene66037:intron | 30.0% |
! | GTGTCAATGTTGATGAAATT+TGG | + | chr7.3:45508083-45508102 | None:intergenic | 30.0% |
! | TCCAACAAATATCCTTTTGT+AGG | + | chr7.3:45508116-45508135 | None:intergenic | 30.0% |
!! | CTTGACATGAGCTATTTTAT+AGG | - | chr7.3:45507898-45507917 | MS.gene66037:intron | 30.0% |
ACACAATTCATATCCTTGGT+AGG | + | chr7.3:45506912-45506931 | None:intergenic | 35.0% | |
ACATTCAAAGACCCTACAAA+AGG | - | chr7.3:45508101-45508120 | MS.gene66037:intron | 35.0% | |
ATTTGCAAAATTTCCAGCTG+TGG | + | chr7.3:45508229-45508248 | None:intergenic | 35.0% | |
CCCTACAAAAGGATATTTGT+TGG | - | chr7.3:45508112-45508131 | MS.gene66037:intron | 35.0% | |
CTCCATTGAAAAATGTGTCT+CGG | - | chr7.3:45507300-45507319 | MS.gene66037:intron | 35.0% | |
GATGAATACGTTACAACTCA+AGG | - | chr7.3:45507663-45507682 | MS.gene66037:CDS | 35.0% | |
TGGCCACGTTTCTATTTATT+TGG | - | chr7.3:45507560-45507579 | MS.gene66037:intron | 35.0% | |
TTAAACTTTCGTTCATGCGT+AGG | - | chr7.3:45507493-45507512 | MS.gene66037:intron | 35.0% | |
TTCATATCCTTGGTAGGAAA+TGG | + | chr7.3:45506906-45506925 | None:intergenic | 35.0% | |
TTGTAGCTGGAGACTATAAA+TGG | - | chr7.3:45508288-45508307 | MS.gene66037:CDS | 35.0% | |
TTTATAGTCTCCAGCTACAA+AGG | + | chr7.3:45508288-45508307 | None:intergenic | 35.0% | |
TTTGCAAAATTTCCAGCTGT+GGG | + | chr7.3:45508228-45508247 | None:intergenic | 35.0% | |
! | TTGAATGTGTAATGACTTGG+CGG | + | chr7.3:45507250-45507269 | None:intergenic | 35.0% |
!! | TTCCGAGACACATTTTTCAA+TGG | + | chr7.3:45507305-45507324 | None:intergenic | 35.0% |
!!! | TAATTGTGTTTTTGGAGCTG+AGG | - | chr7.3:45508139-45508158 | MS.gene66037:intron | 35.0% |
AACATGCAGATGCATCTGTT+AGG | - | chr7.3:45508024-45508043 | MS.gene66037:intron | 40.0% | |
AGCTTGTCTATATACCCATC+TGG | - | chr7.3:45507516-45507535 | MS.gene66037:intron | 40.0% | |
GCTTGTCTATATACCCATCT+GGG | - | chr7.3:45507517-45507536 | MS.gene66037:intron | 40.0% | |
GGATAAGCAATCGCCTTTAT+TGG | + | chr7.3:45508183-45508202 | None:intergenic | 40.0% | |
GTCCTTCTCTTTGCTTTCTA+AGG | - | chr7.3:45507276-45507295 | MS.gene66037:intron | 40.0% | |
GTTGTGAAGACTGCCAATAA+AGG | - | chr7.3:45508167-45508186 | MS.gene66037:intron | 40.0% | |
TCATGTCCTGAAAACAGAGT+GGG | - | chr7.3:45508052-45508071 | MS.gene66037:intron | 40.0% | |
TTCATGTCCTGAAAACAGAG+TGG | - | chr7.3:45508051-45508070 | MS.gene66037:intron | 40.0% | |
TTGAAGCTGGAGGTTACAAA+TGG | - | chr7.3:45507329-45507348 | MS.gene66037:intron | 40.0% | |
! | GCATTGATCTCCCAATCAAT+AGG | + | chr7.3:45507609-45507628 | None:intergenic | 40.0% |
!! | CGAGACACATTTTTCAATGG+AGG | + | chr7.3:45507302-45507321 | None:intergenic | 40.0% |
AACACAGAGAGGAATGGACA+TGG | - | chr7.3:45507540-45507559 | MS.gene66037:intron | 45.0% | |
ATGGGTGTGGTAGACAACAA+TGG | + | chr7.3:45506939-45506958 | None:intergenic | 45.0% | |
CATGTCCTGAAAACAGAGTG+GGG | - | chr7.3:45508053-45508072 | MS.gene66037:intron | 45.0% | |
GGCCTTAGAAAGCAAAGAGA+AGG | + | chr7.3:45507281-45507300 | None:intergenic | 45.0% | |
GTCTACTCCATTTCCTACCA+AGG | - | chr7.3:45506896-45506915 | MS.gene66037:CDS | 45.0% | |
TGAATCACCTTTCATGGGTG+TGG | + | chr7.3:45506952-45506971 | None:intergenic | 45.0% | |
TTCAGAAGACCACCTCTAGT+TGG | - | chr7.3:45507070-45507089 | MS.gene66037:CDS | 45.0% | |
TTGTCTACCACACCCATGAA+AGG | - | chr7.3:45506942-45506961 | MS.gene66037:CDS | 45.0% | |
! | GAATACCCCACTCTGTTTTC+AGG | + | chr7.3:45508061-45508080 | None:intergenic | 45.0% |
CAGCTGTGGGAAATAGTGAC+AGG | + | chr7.3:45508215-45508234 | None:intergenic | 50.0% | |
CTGTCACTATTTCCCACAGC+TGG | - | chr7.3:45508213-45508232 | MS.gene66037:intron | 50.0% | |
GAGTCGGAATCCTTTGTAGC+TGG | - | chr7.3:45508275-45508294 | MS.gene66037:intron | 50.0% | |
TCCTCTCTGTGTTCCCAGAT+GGG | + | chr7.3:45507533-45507552 | None:intergenic | 50.0% | |
TCTGGGAACACAGAGAGGAA+TGG | - | chr7.3:45507534-45507553 | MS.gene66037:intron | 50.0% | |
TTCCTCTCTGTGTTCCCAGA+TGG | + | chr7.3:45507534-45507553 | None:intergenic | 50.0% | |
! | GTCTCGGAAGAGTTTGAAGC+TGG | - | chr7.3:45507316-45507335 | MS.gene66037:intron | 50.0% |
! | TCGGAAGAGTTTGAAGCTGG+AGG | - | chr7.3:45507319-45507338 | MS.gene66037:intron | 50.0% |
ACCCATCTGGGAACACAGAG+AGG | - | chr7.3:45507529-45507548 | MS.gene66037:intron | 55.0% | |
AGGGCAAGCACACCAACTAG+AGG | + | chr7.3:45507085-45507104 | None:intergenic | 55.0% | |
GCAAGCACACCAACTAGAGG+TGG | + | chr7.3:45507082-45507101 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 45506888 | 45508361 | 45506888 | ID=MS.gene66037 |
chr7.3 | mRNA | 45506888 | 45508361 | 45506888 | ID=MS.gene66037.t1;Parent=MS.gene66037 |
chr7.3 | exon | 45508286 | 45508361 | 45508286 | ID=MS.gene66037.t1.exon1;Parent=MS.gene66037.t1 |
chr7.3 | CDS | 45508286 | 45508361 | 45508286 | ID=cds.MS.gene66037.t1;Parent=MS.gene66037.t1 |
chr7.3 | exon | 45507899 | 45508013 | 45507899 | ID=MS.gene66037.t1.exon2;Parent=MS.gene66037.t1 |
chr7.3 | CDS | 45507899 | 45508013 | 45507899 | ID=cds.MS.gene66037.t1;Parent=MS.gene66037.t1 |
chr7.3 | exon | 45507565 | 45507734 | 45507565 | ID=MS.gene66037.t1.exon3;Parent=MS.gene66037.t1 |
chr7.3 | CDS | 45507565 | 45507734 | 45507565 | ID=cds.MS.gene66037.t1;Parent=MS.gene66037.t1 |
chr7.3 | exon | 45506888 | 45507216 | 45506888 | ID=MS.gene66037.t1.exon4;Parent=MS.gene66037.t1 |
chr7.3 | CDS | 45506888 | 45507216 | 45506888 | ID=cds.MS.gene66037.t1;Parent=MS.gene66037.t1 |
Gene Sequence |
Protein sequence |