AlfalfaGEDB | MS.gene66283

M. sativa cultivar XinJiangDaYe / MS.gene66283

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF13855.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66283.t1	XP_013453251.1	96	580	23	0	1	580	49	628	2.10E-240	841.6

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66283.t1	Q84JQ4	52.1	580	263	5	2	576	51	620	4.8e-124	446.4

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66283.t1	A0A072UN50	96.0	580	23	0	1	580	49	628	1.5e-240	841.6

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene016615	MS.gene66283	PPI
MS.gene023553	MS.gene66283	PPI
MS.gene029894	MS.gene66283	PPI
MS.gene042870	MS.gene66283	PPI
MS.gene052774	MS.gene66283	PPI
MS.gene056221	MS.gene66283	PPI
MS.gene073809	MS.gene66283	PPI
MS.gene09071	MS.gene66283	PPI
MS.gene30880	MS.gene66283	PPI
MS.gene33467	MS.gene66283	PPI

Showing 1 to 10 of 22 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66283.t1	MTR_6g093050	96.379	580	21	0	1	580	49	628	0.0	1154
MS.gene66283.t1	MTR_8g101260	65.445	573	186	5	3	573	59	621	0.0	750
MS.gene66283.t1	MTR_2g105900	49.066	589	280	9	2	572	35	621	0.0	545
MS.gene66283.t1	MTR_1g009270	45.854	591	273	7	9	576	56	622	2.98e-176	514
MS.gene66283.t1	MTR_8g087420	46.552	580	275	10	9	573	57	616	3.80e-173	505
MS.gene66283.t1	MTR_4g124990	40.940	596	310	12	1	569	46	626	1.54e-145	434
MS.gene66283.t1	MTR_2g042710	38.699	584	331	9	3	569	56	629	3.19e-140	421
MS.gene66283.t1	MTR_8g021350	39.021	633	305	12	3	571	58	673	1.23e-132	404
MS.gene66283.t1	MTR_8g107470	35.099	604	343	15	3	572	61	649	3.14e-104	328
MS.gene66283.t1	MTR_3g093710	35.094	587	325	13	9	569	59	615	3.62e-103	325

Showing 1 to 10 of 579 entries

Previous1 2 3 4 5…58Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene66283.t1	AT5G35390	49.748	595	260	10	2	576	61	636	0.0	580
MS.gene66283.t1	AT2G07040	47.966	590	272	10	2	576	51	620	0.0	565
MS.gene66283.t1	AT4G31250	45.805	596	291	11	2	571	54	643	0.0	541
MS.gene66283.t1	AT3G20190	47.059	595	284	7	3	580	78	658	0.0	529
MS.gene66283.t1	AT1G50610	46.600	603	280	10	3	579	73	659	3.36e-168	494
MS.gene66283.t1	AT3G42880	36.519	586	346	10	3	568	52	631	2.65e-128	390
MS.gene66283.t1	AT5G20690	36.156	614	333	11	3	569	57	658	3.57e-126	385
MS.gene66283.t1	AT3G20190	48.276	377	178	5	207	580	107	469	1.10e-117	358
MS.gene66283.t1	AT2G26730	36.789	598	324	15	9	576	54	627	1.84e-106	334
MS.gene66283.t1	AT5G05160	35.392	599	325	16	9	577	59	625	1.52e-99	316

Showing 1 to 10 of 551 entries

Previous1 2 3 4 5…56Next

Find 138 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAAATGAACAATGTTAAT+AGG	0.337937	6.4:+63878521	MS.gene66283:CDS
AACCGCAACGATATCAACCT+CGG	0.658575	6.4:-63877471	None:intergenic
AAGACTGATGTGTGGAGTCT+TGG	0.523797	6.4:+63879132	MS.gene66283:CDS
AAGCGTTTCAAGGGATGCAG+TGG	0.613015	6.4:+63877382	MS.gene66283:CDS
AAGCTAATCGTTCTGATATA+CGG	0.365012	6.4:-63877255	None:intergenic
AAGCTGTGTGGAGTCCCTTT+AGG	0.375098	6.4:+63878058	MS.gene66283:CDS
AAGGTAAATGTTCTTGAGAC+CGG	0.531549	6.4:-63877325	None:intergenic
AATAAATTTGAGCCGTATTG+TGG	0.497798	6.4:+63878108	MS.gene66283:CDS
AATCCGTAGTCGGTTAGTAT+AGG	0.481634	6.4:-63879021	None:intergenic
AATGCAGGATACCATTCTAT+AGG	0.404201	6.4:+63878850	MS.gene66283:intron

Showing 1 to 10 of 138 entries

Previous1 2 3 4 5…14Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAGCTAATCGTTCTGATATA+CGG	-	chr6.4:63877258-63877277	None:intergenic	30.0%
AATAAATTTGAGCCGTATTG+TGG	+	chr6.4:63878108-63878127	MS.gene66283:CDS	30.0%
ACAATACGGCTCAAATTTAT+TGG	-	chr6.4:63878109-63878128	None:intergenic	30.0%
AGGGATTGAATATCTATACA+AGG	+	chr6.4:63878927-63878946	MS.gene66283:CDS	30.0%
CACAGACATAAGTATTTGTA+AGG	-	chr6.4:63877955-63877974	None:intergenic	30.0%
CTTACAAATACTTATGTCTG+TGG	+	chr6.4:63877953-63877972	MS.gene66283:intron	30.0%
GATACAAGAGAATAATCATG+AGG	+	chr6.4:63879419-63879438	MS.gene66283:CDS	30.0%
GATATACGGTAAATCTTTGA+TGG	-	chr6.4:63877244-63877263	None:intergenic	30.0%
GGAGTTAACAAGTAATAATG+AGG	+	chr6.4:63879299-63879318	MS.gene66283:CDS	30.0%
GTAGCGAATAATCAATTAGA+GGG	+	chr6.4:63877555-63877574	MS.gene66283:CDS	30.0%

Showing 1 to 10 of 169 entries

Previous1 2 3 4 5…17Next

Chromosome	Type	Strat	End	Strand	Name
chr6.4	gene	63877126	63879461	63877126	ID=MS.gene66283
chr6.4	mRNA	63877126	63879461	63877126	ID=MS.gene66283.t1;Parent=MS.gene66283
chr6.4	exon	63877126	63877624	63877126	ID=MS.gene66283.t1.exon1;Parent=MS.gene66283.t1
chr6.4	CDS	63877126	63877624	63877126	ID=cds.MS.gene66283.t1;Parent=MS.gene66283.t1
chr6.4	exon	63878050	63878688	63878050	ID=MS.gene66283.t1.exon2;Parent=MS.gene66283.t1
chr6.4	CDS	63878050	63878688	63878050	ID=cds.MS.gene66283.t1;Parent=MS.gene66283.t1
chr6.4	exon	63878857	63879461	63878857	ID=MS.gene66283.t1.exon3;Parent=MS.gene66283.t1
chr6.4	CDS	63878857	63879461	63878857	ID=cds.MS.gene66283.t1;Parent=MS.gene66283.t1

Gene Sequence

>MS.gene66283

ATGCCTCCATGTAATGGTGATAATGCAAATTGGGCGGGCGTTCTTTGTTACAAAGGAAATGTTTGGGGATTCAAACTCGAAAACATGAACCTTAAAGGTAACATTGACGTCGATTCCATCAAAGATTTACCGTATATCAGAACGATTAGCTTAATGAACAACCAATTCGATACCACGTGGCCAAACCTAAACAAACTCACCGGTCTCAAGAACATTTACCTTTCTAATAATAAATTCTCTGGCGAGATTCCAGCAGAAGCGTTTCAAGGGATGCAGTGGCTGAAGAAAATTTATCTCGACAATAATCAGTTCACTGGTCCTATTCCAACTTCCCTTGCTTCATTGCCGAGGTTGATATCGTTGCGGTTGGATGGAAATAAATTCACCGGTCCTATTCCTGAATTTAGAGAAACGCTTAAATCATTCAGCGTAGCGAATAATCAATTAGAGGGTGAAATACCTGCCAACCTTAGCAAGATTCCAGCTTCATCTTTTTCTGGTAAGATATATATGTATATAGACTCATGAATTCAAAGAATAAATGTGGATTTCATTCATCAAAGAAAGAGATAAGCTAGTTTAGCAATGTATATATATACCTTTTATGGATAAACAGTTTAATTAAACTCTTATAGTATAAAATCTTATCATGTAAGCCCTCATGTGTAAGCCGTTTTTATAACAAAAAATAAAATTAAGTCAGATTGTTTCTATATAAGTTATATATATGCTGTTTTCGTATGCTATCCTGAAGAGCTTGTGAAAATAAGATAAAAACAATTTATGCACATGTCATAAGTAGTTTCTAAAAGATATTGTCAAAAAGCCTTACAAATACTTATGTCTGTGGATAAAACTCAAATTAGTCGACCCAAACATGCATATACTATTCAATGAATTGATACGAAATGATGGTCAGCGCAGGTAATGAAAAGCTGTGTGGAGTCCCTTTAGGAGCATGTTCGTCGAATAAGAAATCACCAATAAATTTGAGCCGTATTGTGGTCGTGGTTCTTGTTAGTCTTGCACTTCTTGTGATTGCAGCAGTAATAGTATATGTCCTTATGAAAAGAAGAAAAACTAAACAACAAGAAGAATTAGGAGAAGGAGCTGGTGTAGGTGCAAACACGAGCGGCAGGGATAATAATAATCAAAAGAAAGGATCATCATCAAATAATAATACAGACGATGGTTCAGTAAGATCACGTGGAAGCAGTAATACCAGTAGCAGAAAAGGAGATAGCAAGTTGTCCTTTGTGAGGGAAGAAGTATCTGCAGAATTTGATTTGCAAGATCTTTTGAGAGCCGCTGCTGAGATATTAGGAAGTGGTTGTCACAGTTCATCCTACAAGGCTGCTCTGTTGACTGGCCCTACCGTTGTCGTCAAAAGATACAAACAAATGAACAATGTTAATAGGCCAGAGTTTCAAGAGCACATGAGAAGACTAGGAAGGTTGAATCATCCGAATCTCCTTCCTCTCGTAGCTTACTACTACAAAAGAGACGAGAAACTTTTTATCACCGACTATGTTCCCAATGGCAGTTTGGCCGTTCGCCTTCACGGTATTTTCCTCTTCACTTCAACTAATAAACATCCGAGAATATAAATTCAATATTTTCGCACCTTTTCCTCTTACTATTTCCGAAAGATCTAGCATATTAATTCAAATATGCATTATATAGCCAGTGAGAACAACTACCTAGTATAACTAACTTTTACATTTAATGCAGGATACCATTCTATAGGACAGGAAAGCCTTGATTGGCCAAGCAGATTGAAGATAGTGAAAGGCATAGCGAAAGGGATTGAATATCTATACAAGGAGATGCCGAACTTGATTGCGCCTCATGGTCATCTTAAATCGTCAAATGTTCTATTGAGTGAGTCATTGGAGCCTATACTAACCGACTACGGATTAGTACCTGTGATAAACCAGGATGTTGCTCACGAAATAATGGTTATATACGCGTCACCTGAGTATTTGCAGCATGGGCGGATCACAAAGAAGACTGATGTGTGGAGTCTTGGTATACTCATTTTGGAAATTCTAACCGGAAAACTTCCTGCTAATTTCCTACAACAAAGTGGTAAAGGGAGTGAGTTGAGTTTAGCGAATTGGGTGGATTCTGTTGTGCCGGAAGAGTGGAGCAGCGAGGTTTTTGATAAAGATATGGAGTTAACAAGTAATAATGAGGGGGAGATGGTTAAGCTTTTGAAGATTGCATTGGCATGTTGTGATATGGATATTGATAAGAGATTGGATTTGAAAGAAGCTGCTGAAAGAATTCAAGAGATACAAGAGAATAATCATGAGGATGATTTGAATTCTTCTTAG

Protein sequence

>MS.gene66283.t1

MPPCNGDNANWAGVLCYKGNVWGFKLENMNLKGNIDVDSIKDLPYIRTISLMNNQFDTTWPNLNKLTGLKNIYLSNNKFSGEIPAEAFQGMQWLKKIYLDNNQFTGPIPTSLASLPRLISLRLDGNKFTGPIPEFRETLKSFSVANNQLEGEIPANLSKIPASSFSGNEKLCGVPLGACSSNKKSPINLSRIVVVVLVSLALLVIAAVIVYVLMKRRKTKQQEELGEGAGVGANTSGRDNNNQKKGSSSNNNTDDGSVRSRGSSNTSSRKGDSKLSFVREEVSAEFDLQDLLRAAAEILGSGCHSSSYKAALLTGPTVVVKRYKQMNNVNRPEFQEHMRRLGRLNHPNLLPLVAYYYKRDEKLFITDYVPNGSLAVRLHGYHSIGQESLDWPSRLKIVKGIAKGIEYLYKEMPNLIAPHGHLKSSNVLLSESLEPILTDYGLVPVINQDVAHEIMVIYASPEYLQHGRITKKTDVWSLGILILEILTGKLPANFLQQSGKGSELSLANWVDSVVPEEWSSEVFDKDMELTSNNEGEMVKLLKIALACCDMDIDKRLDLKEAAERIQEIQENNHEDDLNSS