Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene66649.t1 | XP_013455729.1 | 96.5 | 395 | 14 | 0 | 1 | 395 | 19 | 413 | 1.40E-211 | 745.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene66649.t1 | Q9SF15 | 35.3 | 434 | 228 | 9 | 1 | 392 | 23 | 445 | 3.9e-61 | 236.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene66649.t1 | A0A072UV60 | 96.5 | 395 | 14 | 0 | 1 | 395 | 19 | 413 | 1.0e-211 | 745.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene055551 | MS.gene66649 | 0.803117 | 4.06E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene66649.t1 | MTR_4g051515 | 96.456 | 395 | 14 | 0 | 1 | 395 | 19 | 413 | 0.0 | 785 |
MS.gene66649.t1 | MTR_1g056910 | 43.928 | 387 | 208 | 7 | 1 | 385 | 19 | 398 | 4.05e-101 | 306 |
MS.gene66649.t1 | MTR_1g056870 | 37.530 | 421 | 228 | 8 | 1 | 393 | 20 | 433 | 1.05e-85 | 267 |
MS.gene66649.t1 | MTR_1g056880 | 37.292 | 421 | 229 | 8 | 1 | 393 | 20 | 433 | 2.51e-85 | 266 |
MS.gene66649.t1 | MTR_7g106340 | 39.066 | 407 | 224 | 9 | 1 | 393 | 21 | 417 | 8.32e-85 | 265 |
MS.gene66649.t1 | MTR_6g462610 | 63.981 | 211 | 33 | 2 | 99 | 309 | 1 | 168 | 1.55e-83 | 252 |
MS.gene66649.t1 | MTR_1g036770 | 76.974 | 152 | 25 | 1 | 99 | 250 | 1 | 142 | 2.70e-75 | 231 |
MS.gene66649.t1 | MTR_2g087350 | 38.131 | 396 | 230 | 8 | 1 | 393 | 19 | 402 | 1.46e-73 | 235 |
MS.gene66649.t1 | MTR_0006s0210 | 77.551 | 147 | 23 | 1 | 99 | 245 | 1 | 137 | 1.33e-71 | 221 |
MS.gene66649.t1 | MTR_1g056840 | 34.204 | 421 | 216 | 10 | 1 | 393 | 20 | 407 | 1.01e-67 | 220 |
MS.gene66649.t1 | MTR_1g037060 | 81.308 | 107 | 19 | 1 | 99 | 205 | 1 | 106 | 8.56e-52 | 169 |
MS.gene66649.t1 | MTR_1g037070 | 72.840 | 81 | 22 | 0 | 257 | 337 | 1 | 81 | 7.22e-31 | 113 |
MS.gene66649.t1 | MTR_5g077510 | 27.204 | 397 | 263 | 14 | 1 | 386 | 48 | 429 | 4.34e-27 | 112 |
MS.gene66649.t1 | MTR_3g065080 | 25.063 | 399 | 268 | 12 | 1 | 386 | 49 | 429 | 1.00e-26 | 111 |
MS.gene66649.t1 | MTR_6g071340 | 25.373 | 402 | 248 | 16 | 1 | 374 | 18 | 395 | 1.67e-24 | 104 |
MS.gene66649.t1 | MTR_5g048050 | 25.641 | 390 | 262 | 15 | 1 | 374 | 38 | 415 | 5.15e-22 | 97.4 |
MS.gene66649.t1 | MTR_4g085720 | 26.884 | 398 | 241 | 14 | 1 | 379 | 27 | 393 | 1.32e-21 | 96.3 |
MS.gene66649.t1 | MTR_8g092870 | 25.721 | 416 | 251 | 14 | 1 | 388 | 23 | 408 | 1.67e-21 | 95.9 |
MS.gene66649.t1 | MTR_3g095730 | 25.806 | 403 | 265 | 17 | 1 | 388 | 26 | 409 | 1.19e-19 | 90.5 |
MS.gene66649.t1 | MTR_5g015210 | 22.306 | 399 | 273 | 11 | 1 | 392 | 80 | 448 | 8.94e-14 | 72.8 |
MS.gene66649.t1 | MTR_4g091880 | 24.031 | 387 | 242 | 13 | 1 | 374 | 18 | 365 | 8.13e-12 | 66.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene66649.t1 | AT3G11840 | 35.253 | 434 | 228 | 9 | 1 | 392 | 23 | 445 | 1.41e-75 | 242 |
MS.gene66649.t1 | AT2G35930 | 34.961 | 389 | 237 | 8 | 1 | 385 | 25 | 401 | 8.99e-72 | 231 |
MS.gene66649.t1 | AT3G52450 | 33.494 | 415 | 237 | 9 | 1 | 385 | 20 | 425 | 8.10e-66 | 216 |
MS.gene66649.t1 | AT3G19380 | 25.600 | 375 | 244 | 10 | 1 | 360 | 27 | 381 | 1.57e-25 | 107 |
MS.gene66649.t1 | AT1G66160 | 26.515 | 396 | 231 | 14 | 1 | 374 | 46 | 403 | 5.46e-23 | 100 |
MS.gene66649.t1 | AT1G49780 | 26.250 | 400 | 264 | 9 | 1 | 386 | 27 | 409 | 2.38e-22 | 98.6 |
MS.gene66649.t1 | AT5G37490 | 25.385 | 390 | 258 | 12 | 1 | 377 | 44 | 413 | 1.22e-17 | 84.7 |
MS.gene66649.t1 | AT3G18710 | 27.089 | 395 | 242 | 15 | 1 | 374 | 25 | 394 | 2.06e-15 | 77.8 |
MS.gene66649.t1 | AT5G09800 | 22.871 | 411 | 259 | 17 | 1 | 388 | 24 | 399 | 4.27e-15 | 77.0 |
MS.gene66649.t1 | AT1G66160 | 25.068 | 367 | 216 | 13 | 30 | 374 | 58 | 387 | 1.29e-14 | 75.5 |
MS.gene66649.t1 | AT5G64660 | 23.457 | 405 | 276 | 14 | 1 | 388 | 23 | 410 | 1.25e-13 | 72.4 |
MS.gene66649.t1 | AT3G46510 | 26.129 | 310 | 187 | 14 | 1 | 295 | 269 | 551 | 7.90e-11 | 64.3 |
MS.gene66649.t1 | AT3G02840 | 21.988 | 332 | 210 | 8 | 69 | 373 | 42 | 351 | 8.13e-11 | 63.5 |
Find 64 sgRNAs with CRISPR-Local
Find 76 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TACCGGACACACACAAATTT+TGG | 0.165373 | 4.3:-48953514 | None:intergenic |
CAATGTTTAAATTTCCTAAA+AGG | 0.218436 | 4.3:-48954064 | None:intergenic |
CGCTGATTTAATAGCTTGTT+TGG | 0.241169 | 4.3:-48954135 | None:intergenic |
AGAGCTCGTGTTCAATCTTT+TGG | 0.292121 | 4.3:+48954274 | MS.gene66649:CDS |
TCAATTGTCAACTTTAATAA+TGG | 0.293900 | 4.3:-48954026 | None:intergenic |
AACTTATATTTGATCACCTT+TGG | 0.332063 | 4.3:-48954619 | None:intergenic |
TTGCATTACCATGCAAAGTT+TGG | 0.341146 | 4.3:-48954489 | None:intergenic |
GTCAAATACTCTGAACTTCT+TGG | 0.362730 | 4.3:-48953552 | None:intergenic |
ATTCTATTGAGAGGAGATTT+CGG | 0.377684 | 4.3:-48953657 | None:intergenic |
ATTGATACTTGAAAGCGATT+AGG | 0.384604 | 4.3:-48953714 | None:intergenic |
GGTAGTGATTGATTTGTTAC+CGG | 0.384736 | 4.3:-48953531 | None:intergenic |
ATTTACCATCTCAAAATTGT+TGG | 0.385880 | 4.3:-48953994 | None:intergenic |
AGCCTTTGAAGTGTGTGATT+TGG | 0.399496 | 4.3:-48953576 | None:intergenic |
AAGCTCAAGTTCAATGAGTT+CGG | 0.423341 | 4.3:-48954228 | None:intergenic |
CAAACCTTCTTCTAAACCAT+TGG | 0.423496 | 4.3:-48953853 | None:intergenic |
AACACCAATGGTTTAGAAGA+AGG | 0.428838 | 4.3:+48953849 | MS.gene66649:CDS |
TTAGGTTACACTCCACTACT+TGG | 0.430565 | 4.3:+48954555 | MS.gene66649:CDS |
CCGCTTCCACGATCTTTGTT+CGG | 0.442234 | 4.3:-48954196 | None:intergenic |
CTTATAGAGACGTGCCCGTT+GGG | 0.444499 | 4.3:+48954167 | MS.gene66649:CDS |
AGCTCTGTCACATTCTTCTC+CGG | 0.450590 | 4.3:-48954257 | None:intergenic |
CCGAACAAAGATCGTGGAAG+CGG | 0.454134 | 4.3:+48954196 | MS.gene66649:CDS |
AATTGCTAGGTCATCGGTTG+TGG | 0.459481 | 4.3:-48954390 | None:intergenic |
ATTTCATCAACTCGTTGACT+TGG | 0.464491 | 4.3:+48953949 | MS.gene66649:CDS |
TAATCGCTTTCAAGTATCAA+TGG | 0.465271 | 4.3:+48953716 | MS.gene66649:CDS |
CATTGAATTCTTTGTAACAA+TGG | 0.474952 | 4.3:+48954082 | MS.gene66649:CDS |
CATTTGTGTTCGTGCGCGGA+TGG | 0.475091 | 4.3:+48954299 | MS.gene66649:CDS |
GTTAGAGTACTTAGAAAGAG+AGG | 0.479397 | 4.3:+48954104 | MS.gene66649:CDS |
CAACAACATGATGAAGCCTT+TGG | 0.491566 | 4.3:+48953911 | MS.gene66649:CDS |
TTGTTCGGTTTCTACCCAAC+GGG | 0.504938 | 4.3:-48954181 | None:intergenic |
AGAAAGCAAGAGACATACTT+AGG | 0.507558 | 4.3:+48954537 | MS.gene66649:CDS |
AACTTGATTATCAACCACCT+TGG | 0.511472 | 4.3:-48953628 | None:intergenic |
ATGCCTGTCACTGTTGTCAC+AGG | 0.512502 | 4.3:-48953450 | None:intergenic |
AACATGATGAAGCCTTTGGT+TGG | 0.517108 | 4.3:+48953915 | MS.gene66649:CDS |
AGCCAAAATTTGTGTGTGTC+CGG | 0.517453 | 4.3:+48953512 | MS.gene66649:CDS |
GAACCTGTGACAACAGTGAC+AGG | 0.517572 | 4.3:+48953447 | MS.gene66649:CDS |
AGAATATGCATGGTTGAAGT+TGG | 0.517853 | 4.3:+48953777 | MS.gene66649:CDS |
AGTTGGTGTAACAAAGGCTA+TGG | 0.525042 | 4.3:+48953794 | MS.gene66649:CDS |
CAATTCATGAGGCATGGAGC+GGG | 0.541202 | 4.3:+48954329 | MS.gene66649:CDS |
CTCCAAATCACACACTTCAA+AGG | 0.542946 | 4.3:+48953574 | MS.gene66649:CDS |
AACAAGTACAATTGTATGCA+TGG | 0.543793 | 4.3:-48954587 | None:intergenic |
AGCGGTTTCCAAACTTTGCA+TGG | 0.544705 | 4.3:+48954481 | MS.gene66649:CDS |
TTTGTTCGGTTTCTACCCAA+CGG | 0.552342 | 4.3:-48954182 | None:intergenic |
TACTTGAATTGCTAGGTCAT+CGG | 0.558000 | 4.3:-48954396 | None:intergenic |
CTGAAAGTACTTGAATTGCT+AGG | 0.561724 | 4.3:-48954403 | None:intergenic |
AGAGAACAATTCATGAGGCA+TGG | 0.562315 | 4.3:+48954323 | MS.gene66649:CDS |
TGGAGAATTATTCCAAGTAG+TGG | 0.564996 | 4.3:-48954567 | None:intergenic |
CGAACAAAGATCGTGGAAGC+GGG | 0.572107 | 4.3:+48954197 | MS.gene66649:CDS |
TGAGAGAAATAGAATATGCA+TGG | 0.578775 | 4.3:+48953767 | MS.gene66649:CDS |
AAAGTTGACAATTGATGTTG+TGG | 0.586908 | 4.3:+48954034 | MS.gene66649:CDS |
GCTTATAGAGACGTGCCCGT+TGG | 0.587121 | 4.3:+48954166 | MS.gene66649:CDS |
TTCAAAGAAGGAAACACCAA+TGG | 0.588983 | 4.3:+48953837 | MS.gene66649:CDS |
TGAAGATGGATTCTATTGAG+AGG | 0.589853 | 4.3:-48953666 | None:intergenic |
TACAATTGTACTTGTTAACA+AGG | 0.596131 | 4.3:+48954594 | MS.gene66649:CDS |
AGAGATGTTGCAAGTTGGAG+CGG | 0.596852 | 4.3:+48954463 | MS.gene66649:CDS |
ACTTGTTAACAAGGCACCAA+AGG | 0.603108 | 4.3:+48954603 | MS.gene66649:CDS |
GGCACATTTGTGTTCGTGCG+CGG | 0.603860 | 4.3:+48954295 | MS.gene66649:CDS |
TTCAAAGGCTAATCAGAGCA+TGG | 0.608580 | 4.3:+48953589 | MS.gene66649:CDS |
ACAAAGATCGTGGAAGCGGG+TGG | 0.627722 | 4.3:+48954200 | MS.gene66649:CDS |
GGTTGAAGTTGGTGTAACAA+AGG | 0.630121 | 4.3:+48953788 | MS.gene66649:CDS |
ACAATTCATGAGGCATGGAG+CGG | 0.639945 | 4.3:+48954328 | MS.gene66649:CDS |
TTTATCAAATGAATCCAAGG+TGG | 0.659261 | 4.3:+48953614 | MS.gene66649:CDS |
TAGAAACCGAACAAAGATCG+TGG | 0.661750 | 4.3:+48954190 | MS.gene66649:CDS |
GCATAGCGATGATTTCGAAG+AGG | 0.666881 | 4.3:+48954351 | MS.gene66649:CDS |
ATGGAAGAGAACAATTCATG+AGG | 0.672194 | 4.3:+48954318 | MS.gene66649:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTAAAAAGAAATTCAAAGA+AGG | + | chr4.3:48953825-48953844 | MS.gene66649:CDS | 15.0% |
!! | CAATGTTTAAATTTCCTAAA+AGG | - | chr4.3:48954067-48954086 | None:intergenic | 20.0% |
!! | TCAATTGTCAACTTTAATAA+TGG | - | chr4.3:48954029-48954048 | None:intergenic | 20.0% |
! | ATTTACCATCTCAAAATTGT+TGG | - | chr4.3:48953997-48954016 | None:intergenic | 25.0% |
! | CATTGAATTCTTTGTAACAA+TGG | + | chr4.3:48954082-48954101 | MS.gene66649:CDS | 25.0% |
!! | GATTTTATCAAATGAATCCA+AGG | + | chr4.3:48953611-48953630 | MS.gene66649:CDS | 25.0% |
!! | TACAATTGTACTTGTTAACA+AGG | + | chr4.3:48954594-48954613 | MS.gene66649:CDS | 25.0% |
!! | TGAAAATTATTCGTCTTTTG+TGG | + | chr4.3:48953874-48953893 | MS.gene66649:CDS | 25.0% |
!!! | ACAGAAAAAGCATTGAAAAA+TGG | + | chr4.3:48953481-48953500 | MS.gene66649:CDS | 25.0% |
AAAGTTGACAATTGATGTTG+TGG | + | chr4.3:48954034-48954053 | MS.gene66649:CDS | 30.0% | |
AACAAGTACAATTGTATGCA+TGG | - | chr4.3:48954590-48954609 | None:intergenic | 30.0% | |
ATTCTATTGAGAGGAGATTT+CGG | - | chr4.3:48953660-48953679 | None:intergenic | 30.0% | |
ATTGATACTTGAAAGCGATT+AGG | - | chr4.3:48953717-48953736 | None:intergenic | 30.0% | |
TGAGAGAAATAGAATATGCA+TGG | + | chr4.3:48953767-48953786 | MS.gene66649:CDS | 30.0% | |
TTTATCAAATGAATCCAAGG+TGG | + | chr4.3:48953614-48953633 | MS.gene66649:CDS | 30.0% | |
! | TAATCGCTTTCAAGTATCAA+TGG | + | chr4.3:48953716-48953735 | MS.gene66649:CDS | 30.0% |
!! | TCTTGACAAGTTTTTGAAGA+TGG | - | chr4.3:48953683-48953702 | None:intergenic | 30.0% |
!! | TGATACCAACAATTTTGAGA+TGG | + | chr4.3:48953989-48954008 | MS.gene66649:CDS | 30.0% |
AACACCAATGGTTTAGAAGA+AGG | + | chr4.3:48953849-48953868 | MS.gene66649:CDS | 35.0% | |
AACTTGATTATCAACCACCT+TGG | - | chr4.3:48953631-48953650 | None:intergenic | 35.0% | |
AAGCTCAAGTTCAATGAGTT+CGG | - | chr4.3:48954231-48954250 | None:intergenic | 35.0% | |
AGAAAGCAAGAGACATACTT+AGG | + | chr4.3:48954537-48954556 | MS.gene66649:CDS | 35.0% | |
AGAATATGCATGGTTGAAGT+TGG | + | chr4.3:48953777-48953796 | MS.gene66649:CDS | 35.0% | |
ATGGAAGAGAACAATTCATG+AGG | + | chr4.3:48954318-48954337 | MS.gene66649:CDS | 35.0% | |
CAAACCTTCTTCTAAACCAT+TGG | - | chr4.3:48953856-48953875 | None:intergenic | 35.0% | |
GTCAAATACTCTGAACTTCT+TGG | - | chr4.3:48953555-48953574 | None:intergenic | 35.0% | |
TACTTGAATTGCTAGGTCAT+CGG | - | chr4.3:48954399-48954418 | None:intergenic | 35.0% | |
TGAACTTGAGCTTGAAAAAC+CGG | + | chr4.3:48954238-48954257 | MS.gene66649:CDS | 35.0% | |
TGGAGAATTATTCCAAGTAG+TGG | - | chr4.3:48954570-48954589 | None:intergenic | 35.0% | |
TTCAAAGAAGGAAACACCAA+TGG | + | chr4.3:48953837-48953856 | MS.gene66649:CDS | 35.0% | |
TTGCATTACCATGCAAAGTT+TGG | - | chr4.3:48954492-48954511 | None:intergenic | 35.0% | |
! | ATTTCATCAACTCGTTGACT+TGG | + | chr4.3:48953949-48953968 | MS.gene66649:CDS | 35.0% |
! | GATTTCGAAGAGGATTTTGA+GGG | + | chr4.3:48954361-48954380 | MS.gene66649:CDS | 35.0% |
! | GTTAGAGTACTTAGAAAGAG+AGG | + | chr4.3:48954104-48954123 | MS.gene66649:CDS | 35.0% |
! | GTTGTGGATTCAAACCTTTT+AGG | + | chr4.3:48954050-48954069 | MS.gene66649:CDS | 35.0% |
! | TGAAGATGGATTCTATTGAG+AGG | - | chr4.3:48953669-48953688 | None:intergenic | 35.0% |
! | TGATTTCGAAGAGGATTTTG+AGG | + | chr4.3:48954360-48954379 | MS.gene66649:CDS | 35.0% |
!! | CGCTGATTTAATAGCTTGTT+TGG | - | chr4.3:48954138-48954157 | None:intergenic | 35.0% |
!! | CTGAAAGTACTTGAATTGCT+AGG | - | chr4.3:48954406-48954425 | None:intergenic | 35.0% |
!! | GGTAGTGATTGATTTGTTAC+CGG | - | chr4.3:48953534-48953553 | None:intergenic | 35.0% |
!!! | GTTTTAGAGATGTTGCAAGT+TGG | + | chr4.3:48954458-48954477 | MS.gene66649:CDS | 35.0% |
!!! | TCCATGTTTTTTCCAACCAA+AGG | - | chr4.3:48953930-48953949 | None:intergenic | 35.0% |
AACATGATGAAGCCTTTGGT+TGG | + | chr4.3:48953915-48953934 | MS.gene66649:CDS | 40.0% | |
AGAGAACAATTCATGAGGCA+TGG | + | chr4.3:48954323-48954342 | MS.gene66649:CDS | 40.0% | |
AGCCAAAATTTGTGTGTGTC+CGG | + | chr4.3:48953512-48953531 | MS.gene66649:CDS | 40.0% | |
CAACAACATGATGAAGCCTT+TGG | + | chr4.3:48953911-48953930 | MS.gene66649:CDS | 40.0% | |
CTCCAAATCACACACTTCAA+AGG | + | chr4.3:48953574-48953593 | MS.gene66649:CDS | 40.0% | |
GCCTTTGGTTGGAAAAAACA+TGG | + | chr4.3:48953926-48953945 | MS.gene66649:CDS | 40.0% | |
TAGAAACCGAACAAAGATCG+TGG | + | chr4.3:48954190-48954209 | MS.gene66649:CDS | 40.0% | |
TTAGGTTACACTCCACTACT+TGG | + | chr4.3:48954555-48954574 | MS.gene66649:CDS | 40.0% | |
TTCAAAGGCTAATCAGAGCA+TGG | + | chr4.3:48953589-48953608 | MS.gene66649:CDS | 40.0% | |
TTTGTTCGGTTTCTACCCAA+CGG | - | chr4.3:48954185-48954204 | None:intergenic | 40.0% | |
! | ACTTGTTAACAAGGCACCAA+AGG | + | chr4.3:48954603-48954622 | MS.gene66649:CDS | 40.0% |
! | AGAGCTCGTGTTCAATCTTT+TGG | + | chr4.3:48954274-48954293 | MS.gene66649:CDS | 40.0% |
! | AGTTGGTGTAACAAAGGCTA+TGG | + | chr4.3:48953794-48953813 | MS.gene66649:CDS | 40.0% |
! | TACCGGACACACACAAATTT+TGG | - | chr4.3:48953517-48953536 | None:intergenic | 40.0% |
!! | AGCCTTTGAAGTGTGTGATT+TGG | - | chr4.3:48953579-48953598 | None:intergenic | 40.0% |
!! | GGTTGAAGTTGGTGTAACAA+AGG | + | chr4.3:48953788-48953807 | MS.gene66649:CDS | 40.0% |
ACAATTCATGAGGCATGGAG+CGG | + | chr4.3:48954328-48954347 | MS.gene66649:CDS | 45.0% | |
AGCGGTTTCCAAACTTTGCA+TGG | + | chr4.3:48954481-48954500 | MS.gene66649:CDS | 45.0% | |
AGCTCTGTCACATTCTTCTC+CGG | - | chr4.3:48954260-48954279 | None:intergenic | 45.0% | |
GCATAGCGATGATTTCGAAG+AGG | + | chr4.3:48954351-48954370 | MS.gene66649:CDS | 45.0% | |
TTGTTCGGTTTCTACCCAAC+GGG | - | chr4.3:48954184-48954203 | None:intergenic | 45.0% | |
! | AATTGCTAGGTCATCGGTTG+TGG | - | chr4.3:48954393-48954412 | None:intergenic | 45.0% |
! | AGAGATGTTGCAAGTTGGAG+CGG | + | chr4.3:48954463-48954482 | MS.gene66649:CDS | 45.0% |
ATGCCTGTCACTGTTGTCAC+AGG | - | chr4.3:48953453-48953472 | None:intergenic | 50.0% | |
CAATTCATGAGGCATGGAGC+GGG | + | chr4.3:48954329-48954348 | MS.gene66649:CDS | 50.0% | |
CCGAACAAAGATCGTGGAAG+CGG | + | chr4.3:48954196-48954215 | MS.gene66649:CDS | 50.0% | |
CCGCTTCCACGATCTTTGTT+CGG | - | chr4.3:48954199-48954218 | None:intergenic | 50.0% | |
CGAACAAAGATCGTGGAAGC+GGG | + | chr4.3:48954197-48954216 | MS.gene66649:CDS | 50.0% | |
CTTATAGAGACGTGCCCGTT+GGG | + | chr4.3:48954167-48954186 | MS.gene66649:CDS | 50.0% | |
GAACCTGTGACAACAGTGAC+AGG | + | chr4.3:48953447-48953466 | MS.gene66649:CDS | 50.0% | |
ACAAAGATCGTGGAAGCGGG+TGG | + | chr4.3:48954200-48954219 | MS.gene66649:CDS | 55.0% | |
CATTTGTGTTCGTGCGCGGA+TGG | + | chr4.3:48954299-48954318 | MS.gene66649:CDS | 55.0% | |
GCTTATAGAGACGTGCCCGT+TGG | + | chr4.3:48954166-48954185 | MS.gene66649:CDS | 55.0% | |
GGCACATTTGTGTTCGTGCG+CGG | + | chr4.3:48954295-48954314 | MS.gene66649:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 48953441 | 48954628 | 48953441 | ID=MS.gene66649 |
chr4.3 | mRNA | 48953441 | 48954628 | 48953441 | ID=MS.gene66649.t1;Parent=MS.gene66649 |
chr4.3 | exon | 48953441 | 48954628 | 48953441 | ID=MS.gene66649.t1.exon1;Parent=MS.gene66649.t1 |
chr4.3 | CDS | 48953441 | 48954628 | 48953441 | ID=cds.MS.gene66649.t1;Parent=MS.gene66649.t1 |
Gene Sequence |
Protein sequence |