Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66696.t1 | XP_003606085.1 | 94.1 | 219 | 13 | 0 | 1 | 219 | 1 | 219 | 4.10E-104 | 387.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66696.t1 | Q9SRN0 | 46.1 | 219 | 106 | 4 | 3 | 219 | 1 | 209 | 3.5e-51 | 203.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66696.t1 | G7JH86 | 94.1 | 219 | 13 | 0 | 1 | 219 | 1 | 219 | 3.0e-104 | 387.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059154 | MS.gene66696 | 0.812612 | 3.88E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66696.t1 | MTR_4g051880 | 95.890 | 219 | 9 | 0 | 1 | 219 | 1 | 219 | 5.72e-146 | 405 |
| MS.gene66696.t1 | MTR_2g086790 | 63.636 | 220 | 75 | 3 | 4 | 219 | 3 | 221 | 4.10e-103 | 297 |
| MS.gene66696.t1 | MTR_7g106050 | 47.727 | 220 | 104 | 4 | 1 | 219 | 1 | 210 | 1.19e-74 | 224 |
| MS.gene66696.t1 | MTR_1g057420 | 49.315 | 219 | 101 | 3 | 1 | 219 | 1 | 209 | 1.37e-67 | 207 |
| MS.gene66696.t1 | MTR_7g106080 | 53.774 | 106 | 47 | 2 | 115 | 219 | 7 | 111 | 1.06e-35 | 122 |
| MS.gene66696.t1 | MTR_3g092790 | 38.255 | 149 | 83 | 1 | 44 | 192 | 49 | 188 | 7.94e-35 | 123 |
| MS.gene66696.t1 | MTR_7g118270 | 33.333 | 159 | 98 | 2 | 28 | 186 | 53 | 203 | 4.13e-25 | 98.6 |
| MS.gene66696.t1 | MTR_8g024250 | 29.348 | 184 | 113 | 2 | 12 | 186 | 80 | 255 | 9.92e-21 | 88.2 |
| MS.gene66696.t1 | MTR_4g119428 | 31.250 | 144 | 89 | 3 | 31 | 173 | 65 | 199 | 8.43e-16 | 73.9 |
| MS.gene66696.t1 | MTR_3g063310 | 30.899 | 178 | 112 | 4 | 35 | 211 | 83 | 250 | 5.04e-15 | 72.0 |
| MS.gene66696.t1 | MTR_5g087760 | 29.193 | 161 | 107 | 2 | 28 | 186 | 75 | 230 | 5.33e-14 | 69.3 |
| MS.gene66696.t1 | MTR_2g011350 | 21.818 | 165 | 119 | 3 | 34 | 197 | 37 | 192 | 8.56e-14 | 67.8 |
| MS.gene66696.t1 | MTR_1g057400 | 24.865 | 185 | 126 | 4 | 27 | 206 | 27 | 203 | 2.56e-13 | 66.6 |
| MS.gene66696.t1 | MTR_1g105570 | 25.444 | 169 | 115 | 3 | 27 | 194 | 57 | 215 | 8.12e-13 | 65.5 |
| MS.gene66696.t1 | MTR_6g071410 | 30.189 | 159 | 94 | 6 | 29 | 181 | 19 | 166 | 1.64e-12 | 64.7 |
| MS.gene66696.t1 | MTR_6g070890 | 30.189 | 159 | 94 | 6 | 29 | 181 | 19 | 166 | 1.64e-12 | 64.7 |
| MS.gene66696.t1 | MTR_6g471090 | 26.471 | 170 | 111 | 5 | 16 | 181 | 5 | 164 | 1.80e-12 | 64.3 |
| MS.gene66696.t1 | MTR_7g106000 | 25.424 | 177 | 119 | 3 | 27 | 199 | 48 | 215 | 2.98e-12 | 63.9 |
| MS.gene66696.t1 | MTR_1g057270 | 33.051 | 118 | 63 | 3 | 37 | 154 | 73 | 174 | 1.32e-11 | 62.4 |
| MS.gene66696.t1 | MTR_7g106010 | 25.610 | 164 | 109 | 3 | 27 | 186 | 45 | 199 | 2.23e-11 | 61.6 |
| MS.gene66696.t1 | MTR_6g471080 | 34.513 | 113 | 64 | 2 | 20 | 132 | 6 | 108 | 9.12e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66696.t1 | AT3G44220 | 52.915 | 223 | 84 | 4 | 1 | 219 | 1 | 206 | 2.11e-81 | 241 |
| MS.gene66696.t1 | AT3G11660 | 51.613 | 217 | 97 | 4 | 3 | 219 | 1 | 209 | 3.81e-78 | 233 |
| MS.gene66696.t1 | AT3G52470 | 47.248 | 218 | 101 | 4 | 4 | 219 | 3 | 208 | 1.50e-72 | 219 |
| MS.gene66696.t1 | AT2G35960 | 47.032 | 219 | 107 | 2 | 1 | 219 | 1 | 210 | 1.14e-67 | 207 |
| MS.gene66696.t1 | AT5G06330 | 46.119 | 219 | 106 | 5 | 1 | 219 | 1 | 207 | 5.25e-62 | 192 |
| MS.gene66696.t1 | AT4G09590 | 42.922 | 219 | 115 | 3 | 1 | 218 | 1 | 210 | 1.07e-61 | 192 |
| MS.gene66696.t1 | AT2G35970 | 43.379 | 219 | 114 | 3 | 1 | 218 | 1 | 210 | 1.83e-61 | 191 |
| MS.gene66696.t1 | AT5G22200 | 46.667 | 180 | 84 | 2 | 40 | 219 | 43 | 210 | 1.32e-58 | 184 |
| MS.gene66696.t1 | AT5G53730 | 34.031 | 191 | 120 | 1 | 2 | 192 | 8 | 192 | 1.80e-41 | 140 |
| MS.gene66696.t1 | AT4G01410 | 35.149 | 202 | 115 | 3 | 19 | 219 | 41 | 227 | 9.33e-35 | 123 |
| MS.gene66696.t1 | AT5G05657 | 41.221 | 131 | 65 | 5 | 42 | 170 | 12 | 132 | 1.10e-23 | 92.4 |
| MS.gene66696.t1 | AT2G35980 | 28.070 | 171 | 114 | 3 | 17 | 186 | 37 | 199 | 3.19e-18 | 80.5 |
| MS.gene66696.t1 | AT5G22870 | 26.554 | 177 | 111 | 5 | 18 | 186 | 20 | 185 | 1.61e-16 | 75.5 |
| MS.gene66696.t1 | AT5G06320 | 25.263 | 190 | 125 | 4 | 30 | 218 | 57 | 230 | 3.49e-16 | 75.1 |
| MS.gene66696.t1 | AT3G11650 | 27.168 | 173 | 105 | 6 | 15 | 175 | 41 | 204 | 2.07e-14 | 70.1 |
| MS.gene66696.t1 | AT4G05220 | 25.424 | 177 | 119 | 3 | 14 | 186 | 35 | 202 | 6.29e-14 | 68.6 |
| MS.gene66696.t1 | AT1G61760 | 23.936 | 188 | 133 | 3 | 8 | 194 | 30 | 208 | 9.16e-14 | 68.2 |
| MS.gene66696.t1 | AT1G65690 | 28.351 | 194 | 117 | 6 | 21 | 211 | 76 | 250 | 3.46e-13 | 67.0 |
Find 72 sgRNAs with CRISPR-Local
Find 75 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAAGATGGTTAGGAGTATT+AGG | 0.237388 | 4.3:+47972489 | None:intergenic |
| TAGATGCCTATTCTGTTGTT+TGG | 0.267291 | 4.3:+47972314 | None:intergenic |
| ATAGGGAAGGGATTGGAATT+TGG | 0.271259 | 4.3:+47972386 | None:intergenic |
| TGAGTGTGACTTGCATTGTT+AGG | 0.287525 | 4.3:+47972348 | None:intergenic |
| TCCTAACCATCTTCCTAATA+TGG | 0.288914 | 4.3:-47972481 | MS.gene66696:CDS |
| TTAGTTAATATTAAGGTTAA+TGG | 0.295546 | 4.3:-47972104 | MS.gene66696:CDS |
| TGAAGATTGCTTAGCGTAAA+AGG | 0.309792 | 4.3:+47972152 | None:intergenic |
| AGGGTTAGTGTGTTTGGTAT+AGG | 0.313132 | 4.3:+47972368 | None:intergenic |
| TTATGACCTTGGTAAGTATC+AGG | 0.316697 | 4.3:+47972227 | None:intergenic |
| GGGTTAGTGTGTTTGGTATA+GGG | 0.329919 | 4.3:+47972369 | None:intergenic |
| ATTTGGTCGCCGTTTATATA+CGG | 0.336876 | 4.3:-47972194 | MS.gene66696:CDS |
| CTTCAGCAGGATCAGAATAA+TGG | 0.360367 | 4.3:-47972134 | MS.gene66696:CDS |
| ATTGTTAGGGTTAGTGTGTT+TGG | 0.369321 | 4.3:+47972362 | None:intergenic |
| CAACTCCGGCGGCATTATTC+CGG | 0.373049 | 4.3:+47971994 | None:intergenic |
| TTAAGTGGAGGGTTGGAAGT+TGG | 0.386817 | 4.3:-47972076 | MS.gene66696:CDS |
| AGATGCCTATTCTGTTGTTT+GGG | 0.392628 | 4.3:+47972315 | None:intergenic |
| CTTAGCGTAAAAGGCGAAAC+CGG | 0.402202 | 4.3:+47972161 | None:intergenic |
| GTATATAAACGGCGACCAAA+TGG | 0.409835 | 4.3:+47972196 | None:intergenic |
| GTGGTGGCCGCATTCTTTGA+TGG | 0.417030 | 4.3:+47972574 | None:intergenic |
| AGAGATGTTGAAAGTGTAAA+TGG | 0.427163 | 4.3:+47972412 | None:intergenic |
| TAAGTATCAGGAAGTGAAGT+TGG | 0.432285 | 4.3:+47972239 | None:intergenic |
| GTCTAAGGATGATCCATATT+AGG | 0.447285 | 4.3:+47972468 | None:intergenic |
| TACGCTAAGCAATCTTCAGC+AGG | 0.449107 | 4.3:-47972147 | MS.gene66696:CDS |
| GAGTGTGACTTGCATTGTTA+GGG | 0.451798 | 4.3:+47972349 | None:intergenic |
| CCTGCTTATGTTAGATTCTC+CGG | 0.453863 | 4.3:-47972020 | MS.gene66696:CDS |
| TATATACGGTGTTGGCGTGC+CGG | 0.457766 | 4.3:-47972180 | MS.gene66696:CDS |
| AGGGTTGGAAGTTGGATCTC+TGG | 0.457956 | 4.3:-47972068 | MS.gene66696:CDS |
| CTGCGATTATGCGGCGGAGG+AGG | 0.462778 | 4.3:+47972531 | None:intergenic |
| TGGTAAAATCTTTATGACCT+TGG | 0.480324 | 4.3:+47972216 | None:intergenic |
| GTTTGGTATAGGGAAGGGAT+TGG | 0.482308 | 4.3:+47972379 | None:intergenic |
| TAATGGAAGGGTTAAGTGGA+GGG | 0.496786 | 4.3:-47972087 | MS.gene66696:CDS |
| AGGTTAATGGAAGGGTTAAG+TGG | 0.499357 | 4.3:-47972091 | MS.gene66696:CDS |
| ATGTTAGATTCTCCGGTGAC+CGG | 0.500276 | 4.3:-47972013 | MS.gene66696:CDS |
| CACAACCCAAACAACAGAAT+AGG | 0.506911 | 4.3:-47972320 | MS.gene66696:CDS |
| AGTGTGTTTGGTATAGGGAA+GGG | 0.508145 | 4.3:+47972374 | None:intergenic |
| GGAAGGGTTAAGTGGAGGGT+TGG | 0.508374 | 4.3:-47972083 | MS.gene66696:CDS |
| TAATATTAAGGTTAATGGAA+GGG | 0.510433 | 4.3:-47972099 | MS.gene66696:CDS |
| ACGCCAACACCGTATATAAA+CGG | 0.513193 | 4.3:+47972185 | None:intergenic |
| TAGGAGAATGAAGGCTCCTA+CGG | 0.524827 | 4.3:+47972508 | None:intergenic |
| GATGATCCATATTAGGAAGA+TGG | 0.526790 | 4.3:+47972475 | None:intergenic |
| CGCCGGAGTTGTTGCTCCGG+CGG | 0.527356 | 4.3:-47971982 | MS.gene66696:CDS |
| TTAATATTAAGGTTAATGGA+AGG | 0.527924 | 4.3:-47972100 | MS.gene66696:CDS |
| TCGCCGTTTATATACGGTGT+TGG | 0.529946 | 4.3:-47972188 | MS.gene66696:CDS |
| AAGTGTAAATGGTGGCATCT+TGG | 0.532549 | 4.3:+47972423 | None:intergenic |
| TGCCGCCGGAGTTGTTGCTC+CGG | 0.544084 | 4.3:-47971985 | MS.gene66696:CDS |
| CGGCTGCGATTATGCGGCGG+AGG | 0.548720 | 4.3:+47972528 | None:intergenic |
| TCCATATTAGGAAGATGGTT+AGG | 0.549303 | 4.3:+47972480 | None:intergenic |
| CCGGAGAATCTAACATAAGC+AGG | 0.556114 | 4.3:+47972020 | None:intergenic |
| TAGTGTGTTTGGTATAGGGA+AGG | 0.560512 | 4.3:+47972373 | None:intergenic |
| GGCGGCATTATTCCGGTCAC+CGG | 0.569600 | 4.3:+47972001 | None:intergenic |
| GCCGCATTCTTTGATGGACA+TGG | 0.572773 | 4.3:+47972580 | None:intergenic |
| CTCCTACGGCTGCGATTATG+CGG | 0.575416 | 4.3:+47972522 | None:intergenic |
| TAGGAGTATTAGGAGAATGA+AGG | 0.580938 | 4.3:+47972499 | None:intergenic |
| GCAGGATCAGAATAATGGAA+TGG | 0.594421 | 4.3:-47972129 | MS.gene66696:CDS |
| AACCGCCGGAGCAACAACTC+CGG | 0.597861 | 4.3:+47971980 | None:intergenic |
| AAAAGCTGAAACTTAACCGC+CGG | 0.610815 | 4.3:+47971966 | None:intergenic |
| CACGGTCTTCGTCGTCGTGG+TGG | 0.611804 | 4.3:+47972558 | None:intergenic |
| TGCGGCGGAGGAGGTTGCCA+CGG | 0.619087 | 4.3:+47972540 | None:intergenic |
| CTACGGCTGCGATTATGCGG+CGG | 0.627388 | 4.3:+47972525 | None:intergenic |
| CGCCGGAGCAACAACTCCGG+CGG | 0.631010 | 4.3:+47971983 | None:intergenic |
| TTAATGGAAGGGTTAAGTGG+AGG | 0.631865 | 4.3:-47972088 | MS.gene66696:CDS |
| GGTGACCGGAATAATGCCGC+CGG | 0.633130 | 4.3:-47971999 | MS.gene66696:CDS |
| CGCCGCATAATCGCAGCCGT+AGG | 0.634085 | 4.3:-47972524 | MS.gene66696:CDS |
| TGCCACGGTCTTCGTCGTCG+TGG | 0.636254 | 4.3:+47972555 | None:intergenic |
| TTGGAAGTTGGATCTCTGGA+AGG | 0.643048 | 4.3:-47972064 | MS.gene66696:CDS |
| AAGTTGGTAGTGAGATCTGT+TGG | 0.649819 | 4.3:+47972255 | None:intergenic |
| ACCATGTCCATCAAAGAATG+CGG | 0.667345 | 4.3:-47972581 | MS.gene66696:CDS |
| TCACTTCCTGATACTTACCA+AGG | 0.676285 | 4.3:-47972233 | MS.gene66696:CDS |
| GATGTTGAAAGTGTAAATGG+TGG | 0.676353 | 4.3:+47972415 | None:intergenic |
| CACCACGACGACGAAGACCG+TGG | 0.681391 | 4.3:-47972557 | MS.gene66696:CDS |
| TCTTATAAGAAGCATAGACA+TGG | 0.699623 | 4.3:+47972279 | None:intergenic |
| GCATCTTGGATCATGAAACG+TGG | 0.709166 | 4.3:+47972437 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAGTTAATATTAAGGTTAA+TGG | - | chr4.3:47972415-47972434 | MS.gene66696:CDS | 15.0% |
| !!! | AATGGTTTTAGTTAATATTA+AGG | - | chr4.3:47972408-47972427 | MS.gene66696:CDS | 15.0% |
| !! | TAATATTAAGGTTAATGGAA+GGG | - | chr4.3:47972420-47972439 | MS.gene66696:CDS | 20.0% |
| !! | TTAATATTAAGGTTAATGGA+AGG | - | chr4.3:47972419-47972438 | MS.gene66696:CDS | 20.0% |
| !! | GTCATAAAGATTTTACCATT+TGG | - | chr4.3:47972308-47972327 | MS.gene66696:CDS | 25.0% |
| TGGTAAAATCTTTATGACCT+TGG | + | chr4.3:47972306-47972325 | None:intergenic | 30.0% | |
| ! | AGAGATGTTGAAAGTGTAAA+TGG | + | chr4.3:47972110-47972129 | None:intergenic | 30.0% |
| ! | TCTTATAAGAAGCATAGACA+TGG | + | chr4.3:47972243-47972262 | None:intergenic | 30.0% |
| ATTTGGTCGCCGTTTATATA+CGG | - | chr4.3:47972325-47972344 | MS.gene66696:CDS | 35.0% | |
| GATGATCCATATTAGGAAGA+TGG | + | chr4.3:47972047-47972066 | None:intergenic | 35.0% | |
| GTCTAAGGATGATCCATATT+AGG | + | chr4.3:47972054-47972073 | None:intergenic | 35.0% | |
| TAAGTATCAGGAAGTGAAGT+TGG | + | chr4.3:47972283-47972302 | None:intergenic | 35.0% | |
| TAGATGCCTATTCTGTTGTT+TGG | + | chr4.3:47972208-47972227 | None:intergenic | 35.0% | |
| TCCATATTAGGAAGATGGTT+AGG | + | chr4.3:47972042-47972061 | None:intergenic | 35.0% | |
| TCCTAACCATCTTCCTAATA+TGG | - | chr4.3:47972038-47972057 | MS.gene66696:CDS | 35.0% | |
| TGAAGATTGCTTAGCGTAAA+AGG | + | chr4.3:47972370-47972389 | None:intergenic | 35.0% | |
| TTATGACCTTGGTAAGTATC+AGG | + | chr4.3:47972295-47972314 | None:intergenic | 35.0% | |
| ! | AGATGCCTATTCTGTTGTTT+GGG | + | chr4.3:47972207-47972226 | None:intergenic | 35.0% |
| ! | ATTGTTAGGGTTAGTGTGTT+TGG | + | chr4.3:47972160-47972179 | None:intergenic | 35.0% |
| ! | GATGTTGAAAGTGTAAATGG+TGG | + | chr4.3:47972107-47972126 | None:intergenic | 35.0% |
| !! | TAGGAGTATTAGGAGAATGA+AGG | + | chr4.3:47972023-47972042 | None:intergenic | 35.0% |
| !!! | ATCATGAAACGTGGTTTTGT+GGG | + | chr4.3:47972076-47972095 | None:intergenic | 35.0% |
| AAAAGCTGAAACTTAACCGC+CGG | + | chr4.3:47972556-47972575 | None:intergenic | 40.0% | |
| AAGTGTAAATGGTGGCATCT+TGG | + | chr4.3:47972099-47972118 | None:intergenic | 40.0% | |
| ACGCCAACACCGTATATAAA+CGG | + | chr4.3:47972337-47972356 | None:intergenic | 40.0% | |
| AGGTTAATGGAAGGGTTAAG+TGG | - | chr4.3:47972428-47972447 | MS.gene66696:CDS | 40.0% | |
| AGTGTGTTTGGTATAGGGAA+GGG | + | chr4.3:47972148-47972167 | None:intergenic | 40.0% | |
| ATAGGGAAGGGATTGGAATT+TGG | + | chr4.3:47972136-47972155 | None:intergenic | 40.0% | |
| CACAACCCAAACAACAGAAT+AGG | - | chr4.3:47972199-47972218 | MS.gene66696:CDS | 40.0% | |
| CCTGCTTATGTTAGATTCTC+CGG | - | chr4.3:47972499-47972518 | MS.gene66696:CDS | 40.0% | |
| CTTCAGCAGGATCAGAATAA+TGG | - | chr4.3:47972385-47972404 | MS.gene66696:CDS | 40.0% | |
| GTATATAAACGGCGACCAAA+TGG | + | chr4.3:47972326-47972345 | None:intergenic | 40.0% | |
| TAATGGAAGGGTTAAGTGGA+GGG | - | chr4.3:47972432-47972451 | MS.gene66696:CDS | 40.0% | |
| TAGTGTGTTTGGTATAGGGA+AGG | + | chr4.3:47972149-47972168 | None:intergenic | 40.0% | |
| TCACTTCCTGATACTTACCA+AGG | - | chr4.3:47972286-47972305 | MS.gene66696:CDS | 40.0% | |
| TTAATGGAAGGGTTAAGTGG+AGG | - | chr4.3:47972431-47972450 | MS.gene66696:CDS | 40.0% | |
| ! | AGGGTTAGTGTGTTTGGTAT+AGG | + | chr4.3:47972154-47972173 | None:intergenic | 40.0% |
| ! | GAGTGTGACTTGCATTGTTA+GGG | + | chr4.3:47972173-47972192 | None:intergenic | 40.0% |
| ! | GCAGGATCAGAATAATGGAA+TGG | - | chr4.3:47972390-47972409 | MS.gene66696:CDS | 40.0% |
| ! | GGGTTAGTGTGTTTGGTATA+GGG | + | chr4.3:47972153-47972172 | None:intergenic | 40.0% |
| ! | TGAGTGTGACTTGCATTGTT+AGG | + | chr4.3:47972174-47972193 | None:intergenic | 40.0% |
| !! | AAGTTGGTAGTGAGATCTGT+TGG | + | chr4.3:47972267-47972286 | None:intergenic | 40.0% |
| !! | GATCATGAAACGTGGTTTTG+TGG | + | chr4.3:47972077-47972096 | None:intergenic | 40.0% |
| !! | GGAAGATGGTTAGGAGTATT+AGG | + | chr4.3:47972033-47972052 | None:intergenic | 40.0% |
| ATGTTAGATTCTCCGGTGAC+CGG | - | chr4.3:47972506-47972525 | MS.gene66696:CDS | 45.0% | |
| CCGGAGAATCTAACATAAGC+AGG | + | chr4.3:47972502-47972521 | None:intergenic | 45.0% | |
| CTTAGCGTAAAAGGCGAAAC+CGG | + | chr4.3:47972361-47972380 | None:intergenic | 45.0% | |
| GCATCTTGGATCATGAAACG+TGG | + | chr4.3:47972085-47972104 | None:intergenic | 45.0% | |
| GTTTGGTATAGGGAAGGGAT+TGG | + | chr4.3:47972143-47972162 | None:intergenic | 45.0% | |
| TACGCTAAGCAATCTTCAGC+AGG | - | chr4.3:47972372-47972391 | MS.gene66696:CDS | 45.0% | |
| TAGGAGAATGAAGGCTCCTA+CGG | + | chr4.3:47972014-47972033 | None:intergenic | 45.0% | |
| TCGCCGTTTATATACGGTGT+TGG | - | chr4.3:47972331-47972350 | MS.gene66696:CDS | 45.0% | |
| TTAAGTGGAGGGTTGGAAGT+TGG | - | chr4.3:47972443-47972462 | MS.gene66696:CDS | 45.0% | |
| TTGGAAGTTGGATCTCTGGA+AGG | - | chr4.3:47972455-47972474 | MS.gene66696:CDS | 45.0% | |
| !!! | AACGTGGTTTTGTGGGTCTA+AGG | + | chr4.3:47972069-47972088 | None:intergenic | 45.0% |
| AGGGTTGGAAGTTGGATCTC+TGG | - | chr4.3:47972451-47972470 | MS.gene66696:CDS | 50.0% | |
| !! | TATATACGGTGTTGGCGTGC+CGG | - | chr4.3:47972339-47972358 | MS.gene66696:CDS | 50.0% |
| CAACTCCGGCGGCATTATTC+CGG | + | chr4.3:47972528-47972547 | None:intergenic | 55.0% | |
| CTCCTACGGCTGCGATTATG+CGG | + | chr4.3:47972000-47972019 | None:intergenic | 55.0% | |
| GGAAGGGTTAAGTGGAGGGT+TGG | - | chr4.3:47972436-47972455 | MS.gene66696:CDS | 55.0% | |
| GTGGTGGCCGCATTCTTTGA+TGG | + | chr4.3:47971948-47971967 | None:intergenic | 55.0% | |
| AACCGCCGGAGCAACAACTC+CGG | + | chr4.3:47972542-47972561 | None:intergenic | 60.0% | |
| CTACGGCTGCGATTATGCGG+CGG | + | chr4.3:47971997-47972016 | None:intergenic | 60.0% | |
| GGCGGCATTATTCCGGTCAC+CGG | + | chr4.3:47972521-47972540 | None:intergenic | 60.0% | |
| GGTGACCGGAATAATGCCGC+CGG | - | chr4.3:47972520-47972539 | MS.gene66696:CDS | 60.0% | |
| CACCACGACGACGAAGACCG+TGG | - | chr4.3:47971962-47971981 | MS.gene66696:CDS | 65.0% | |
| CACGGTCTTCGTCGTCGTGG+TGG | + | chr4.3:47971964-47971983 | None:intergenic | 65.0% | |
| CGCCGCATAATCGCAGCCGT+AGG | - | chr4.3:47971995-47972014 | MS.gene66696:CDS | 65.0% | |
| CTGCGATTATGCGGCGGAGG+AGG | + | chr4.3:47971991-47972010 | None:intergenic | 65.0% | |
| TGCCACGGTCTTCGTCGTCG+TGG | + | chr4.3:47971967-47971986 | None:intergenic | 65.0% | |
| TGCCGCCGGAGTTGTTGCTC+CGG | - | chr4.3:47972534-47972553 | MS.gene66696:CDS | 65.0% | |
| CGCCGGAGCAACAACTCCGG+CGG | + | chr4.3:47972539-47972558 | None:intergenic | 70.0% | |
| CGCCGGAGTTGTTGCTCCGG+CGG | - | chr4.3:47972537-47972556 | MS.gene66696:CDS | 70.0% | |
| CGGCTGCGATTATGCGGCGG+AGG | + | chr4.3:47971994-47972013 | None:intergenic | 70.0% | |
| TGCGGCGGAGGAGGTTGCCA+CGG | + | chr4.3:47971982-47972001 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 47971941 | 47972600 | 47971941 | ID=MS.gene66696 |
| chr4.3 | mRNA | 47971941 | 47972600 | 47971941 | ID=MS.gene66696.t1;Parent=MS.gene66696 |
| chr4.3 | exon | 47971941 | 47972600 | 47971941 | ID=MS.gene66696.t1.exon1;Parent=MS.gene66696.t1 |
| chr4.3 | CDS | 47971941 | 47972600 | 47971941 | ID=cds.MS.gene66696.t1;Parent=MS.gene66696.t1 |
| Gene Sequence |
| Protein sequence |
