Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66776.t1 | XP_003606125.1 | 96.3 | 296 | 9 | 1 | 1 | 294 | 1 | 296 | 3.80E-137 | 497.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66776.t1 | Q8LEJ6 | 48.3 | 174 | 85 | 2 | 68 | 236 | 29 | 202 | 2.9e-37 | 157.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66776.t1 | G7JIF3 | 96.3 | 296 | 9 | 1 | 1 | 294 | 1 | 296 | 2.7e-137 | 497.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056470 | MS.gene66776 | 0.910254 | 2.30E-82 | -1.69E-46 |
| MS.gene058848 | MS.gene66776 | 0.868584 | 5.86E-66 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66776.t1 | MTR_4g053380 | 96.622 | 296 | 8 | 1 | 1 | 294 | 1 | 296 | 0.0 | 565 |
| MS.gene66776.t1 | MTR_4g059840 | 81.911 | 293 | 45 | 5 | 2 | 292 | 1 | 287 | 3.59e-147 | 415 |
| MS.gene66776.t1 | MTR_4g059790 | 84.291 | 261 | 36 | 3 | 24 | 282 | 22 | 279 | 2.88e-136 | 387 |
| MS.gene66776.t1 | MTR_2g093970 | 56.949 | 295 | 111 | 8 | 2 | 289 | 1 | 286 | 3.59e-98 | 290 |
| MS.gene66776.t1 | MTR_8g087450 | 59.524 | 210 | 72 | 3 | 24 | 222 | 17 | 224 | 4.53e-78 | 239 |
| MS.gene66776.t1 | MTR_2g017950 | 46.602 | 309 | 124 | 8 | 2 | 289 | 1 | 289 | 1.33e-74 | 230 |
| MS.gene66776.t1 | MTR_2g093980 | 47.241 | 290 | 135 | 7 | 9 | 292 | 5 | 282 | 6.37e-73 | 226 |
| MS.gene66776.t1 | MTR_2g017960 | 55.814 | 258 | 104 | 4 | 8 | 264 | 3 | 251 | 8.15e-72 | 223 |
| MS.gene66776.t1 | MTR_2g017970 | 64.205 | 176 | 55 | 2 | 75 | 249 | 68 | 236 | 2.42e-71 | 221 |
| MS.gene66776.t1 | MTR_8g087460 | 50.201 | 249 | 80 | 8 | 6 | 222 | 6 | 242 | 1.02e-67 | 213 |
| MS.gene66776.t1 | MTR_8g087470 | 53.138 | 239 | 88 | 8 | 6 | 222 | 6 | 242 | 4.30e-67 | 212 |
| MS.gene66776.t1 | MTR_4g059780 | 55.838 | 197 | 78 | 3 | 32 | 224 | 48 | 239 | 1.45e-66 | 210 |
| MS.gene66776.t1 | MTR_4g059720 | 50.220 | 227 | 78 | 6 | 1 | 227 | 1 | 192 | 1.15e-60 | 193 |
| MS.gene66776.t1 | MTR_2g093990 | 57.047 | 149 | 63 | 1 | 75 | 223 | 41 | 188 | 2.09e-52 | 172 |
| MS.gene66776.t1 | MTR_7g101080 | 46.203 | 158 | 83 | 2 | 67 | 223 | 32 | 188 | 1.21e-39 | 139 |
| MS.gene66776.t1 | MTR_2g090765 | 45.513 | 156 | 84 | 1 | 68 | 223 | 31 | 185 | 9.37e-31 | 116 |
| MS.gene66776.t1 | MTR_7g075453 | 33.708 | 178 | 97 | 4 | 68 | 240 | 177 | 338 | 1.30e-16 | 79.7 |
| MS.gene66776.t1 | MTR_5g098060 | 30.804 | 224 | 141 | 6 | 74 | 291 | 47 | 262 | 2.00e-16 | 77.8 |
| MS.gene66776.t1 | MTR_2g437700 | 31.169 | 154 | 99 | 4 | 74 | 223 | 194 | 344 | 3.36e-13 | 69.7 |
| MS.gene66776.t1 | MTR_5g098420 | 30.688 | 189 | 115 | 6 | 42 | 227 | 167 | 342 | 1.97e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66776.t1 | AT5G03170 | 47.340 | 188 | 87 | 4 | 61 | 245 | 25 | 203 | 1.18e-47 | 160 |
| MS.gene66776.t1 | AT5G60490 | 52.667 | 150 | 69 | 2 | 75 | 223 | 39 | 187 | 4.31e-45 | 153 |
| MS.gene66776.t1 | AT2G20520 | 38.991 | 218 | 120 | 6 | 54 | 265 | 19 | 229 | 1.52e-30 | 115 |
| MS.gene66776.t1 | AT5G44130 | 36.585 | 205 | 116 | 6 | 74 | 274 | 35 | 229 | 4.76e-30 | 114 |
| MS.gene66776.t1 | AT1G03870 | 36.111 | 180 | 107 | 3 | 74 | 246 | 38 | 216 | 6.00e-24 | 97.8 |
| MS.gene66776.t1 | AT3G46550 | 31.034 | 174 | 107 | 6 | 72 | 235 | 204 | 374 | 4.35e-15 | 75.5 |
| MS.gene66776.t1 | AT3G60900 | 28.108 | 185 | 121 | 4 | 55 | 239 | 173 | 345 | 2.85e-13 | 70.1 |
| MS.gene66776.t1 | AT2G04780 | 30.263 | 152 | 100 | 3 | 74 | 223 | 45 | 192 | 1.90e-12 | 66.2 |
| MS.gene66776.t1 | AT2G04780 | 30.263 | 152 | 100 | 3 | 74 | 223 | 45 | 192 | 1.90e-12 | 66.2 |
Find 79 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACATTCAGTTCCACCTTTC+CGG | 0.138093 | 4.3:+46694837 | None:intergenic |
| GGCTTCTCCTTATCAGCTTT+TGG | 0.173769 | 4.3:+46694625 | None:intergenic |
| GAGCAGCAGCTGGTGATAAT+TGG | 0.244026 | 4.3:+46695268 | None:intergenic |
| TGAATGACTTGGCCTTTCTT+AGG | 0.284096 | 4.3:+46695118 | None:intergenic |
| AATGAAGGTACCAATGGTTT+AGG | 0.288239 | 4.3:+46695201 | None:intergenic |
| TCCGAGGAATCTGGCGATAA+TGG | 0.305230 | 4.3:+46694604 | None:intergenic |
| GATTCCACTCCTGACAGTTC+AGG | 0.320899 | 4.3:-46695162 | MS.gene66776:CDS |
| CCAACTCAATTCACAACTAT+TGG | 0.336498 | 4.3:-46695055 | MS.gene66776:CDS |
| CGTCTTGCTATTTATAAAGT+TGG | 0.340020 | 4.3:-46694736 | MS.gene66776:CDS |
| GTGGTTGGAGCTGGTAATGT+AGG | 0.347673 | 4.3:+46695237 | None:intergenic |
| GGGGCTGCAGCTGGTGTGGT+TGG | 0.356342 | 4.3:+46695222 | None:intergenic |
| ATGAAGGTACCAATGGTTTA+GGG | 0.366320 | 4.3:+46695202 | None:intergenic |
| CAACTATTGGCAACAAAATC+AGG | 0.371289 | 4.3:-46695042 | MS.gene66776:CDS |
| ACCGACGAAGGGACTGTCTT+TGG | 0.372165 | 4.3:-46694671 | MS.gene66776:CDS |
| ACATTCAGTTCCACCTTTCC+GGG | 0.381438 | 4.3:+46694838 | None:intergenic |
| AACCCTGTGAGAACACTTGC+TGG | 0.387148 | 4.3:-46694868 | MS.gene66776:CDS |
| TGGCAAAGTGCTTCTTCCTA+TGG | 0.388422 | 4.3:-46694716 | MS.gene66776:CDS |
| GCAGCTGGTGTGGTTGGAGC+TGG | 0.404159 | 4.3:+46695228 | None:intergenic |
| ACAGATGAATCCGAGGAATC+TGG | 0.415550 | 4.3:+46694595 | None:intergenic |
| GGAAGTGTGAACATATCAAC+AGG | 0.440559 | 4.3:-46694802 | MS.gene66776:CDS |
| AGCAGCAGCTGGTGATAATT+GGG | 0.449555 | 4.3:+46695269 | None:intergenic |
| GCCATTATCGCCAGATTCCT+CGG | 0.463299 | 4.3:-46694605 | MS.gene66776:CDS |
| GTGGAATCACTGGGTGCCTC+TGG | 0.463641 | 4.3:+46695177 | None:intergenic |
| GGAGTCGTTGTTGAAGGCTC+TGG | 0.469840 | 4.3:+46694646 | None:intergenic |
| TCCTGCTTTGAGTTGTGAAA+AGG | 0.474595 | 4.3:+46694987 | None:intergenic |
| AGTACCAGAGTTATCATTTG+TGG | 0.474963 | 4.3:+46694567 | None:intergenic |
| AACGACTCCAAAAGCTGATA+AGG | 0.478459 | 4.3:-46694632 | MS.gene66776:CDS |
| GCTGGTAATGTAGGGTGTAT+TGG | 0.481437 | 4.3:+46695246 | None:intergenic |
| ACTGTGAAAATGAATGTGTA+TGG | 0.486591 | 4.3:-46694547 | MS.gene66776:CDS |
| GTACCAGAGTTATCATTTGT+GGG | 0.489167 | 4.3:+46694568 | None:intergenic |
| ATTCCACTCCTGACAGTTCA+GGG | 0.494465 | 4.3:-46695161 | MS.gene66776:CDS |
| TTGGGATAAAGTAGTGGTAG+TGG | 0.494733 | 4.3:+46695287 | None:intergenic |
| CCAATAGTTGTGAATTGAGT+TGG | 0.499317 | 4.3:+46695055 | None:intergenic |
| TGTGAAAAGGCATTGTCATC+CGG | 0.503045 | 4.3:+46695000 | None:intergenic |
| TGGTTGGAGCTGGTAATGTA+GGG | 0.503825 | 4.3:+46695238 | None:intergenic |
| TCAACGGCCCCTGAACTGTC+AGG | 0.504548 | 4.3:+46695153 | None:intergenic |
| GCTCCAGCAAGTGTTCTCAC+AGG | 0.519482 | 4.3:+46694865 | None:intergenic |
| AATGGTTTAGGGGCTGCAGC+TGG | 0.522193 | 4.3:+46695213 | None:intergenic |
| CTGGGTGCCTCTGGTAATGA+AGG | 0.525888 | 4.3:+46695186 | None:intergenic |
| TTCCTCAACTCTCTTTCCGA+TGG | 0.528631 | 4.3:-46694964 | MS.gene66776:CDS |
| TCAGGGGCCGTTGACATCGT+TGG | 0.530469 | 4.3:-46695144 | MS.gene66776:CDS |
| TTTAGGGGCTGCAGCTGGTG+TGG | 0.537732 | 4.3:+46695218 | None:intergenic |
| CTCCAGCAAGTGTTCTCACA+GGG | 0.538486 | 4.3:+46694866 | None:intergenic |
| TGGGTTGACAATTCTTGCAC+CGG | 0.540458 | 4.3:-46695019 | MS.gene66776:CDS |
| AGCTGCAGCCCCTAAACCAT+TGG | 0.546451 | 4.3:-46695211 | MS.gene66776:CDS |
| ACTGTCAGGAGTGGAATCAC+TGG | 0.547891 | 4.3:+46695167 | None:intergenic |
| AAATGAATGTGTATGGAAAG+TGG | 0.552632 | 4.3:-46694540 | MS.gene66776:CDS |
| GCAACAGAAAAGAAATCCAT+AGG | 0.554500 | 4.3:+46694700 | None:intergenic |
| GGGTGTATTGGAGCAGCAGC+TGG | 0.559103 | 4.3:+46695258 | None:intergenic |
| GATTAGGACGTTGAATGACT+TGG | 0.561124 | 4.3:+46695107 | None:intergenic |
| CATCGTTGGAATCCTAAGAA+AGG | 0.568189 | 4.3:-46695130 | MS.gene66776:CDS |
| GAACTGAATGTGATAAGTTA+CGG | 0.572972 | 4.3:-46694826 | MS.gene66776:CDS |
| TGCTGGAGCTAAACCCGGAA+AGG | 0.580904 | 4.3:-46694851 | MS.gene66776:CDS |
| AATGAATGTGTATGGAAAGT+GGG | 0.589784 | 4.3:-46694539 | MS.gene66776:CDS |
| TGTTGCTAAGGCACCGACGA+AGG | 0.590444 | 4.3:-46694683 | MS.gene66776:CDS |
| TAGGATTCCAACGATGTCAA+CGG | 0.590594 | 4.3:+46695137 | None:intergenic |
| ACACTTGCTGGAGCTAAACC+CGG | 0.593390 | 4.3:-46694856 | MS.gene66776:CDS |
| GCCAAAGACAGTCCCTTCGT+CGG | 0.593435 | 4.3:+46694670 | None:intergenic |
| GTTGCTAAGGCACCGACGAA+GGG | 0.594871 | 4.3:-46694682 | MS.gene66776:CDS |
| CAGCTCGAGTTTCTGTCCAT+CGG | 0.599847 | 4.3:+46694948 | None:intergenic |
| TCTGGTAATGAAGGTACCAA+TGG | 0.603914 | 4.3:+46695195 | None:intergenic |
| AAGCCCACAAATGATAACTC+TGG | 0.604424 | 4.3:-46694571 | MS.gene66776:CDS |
| AATCACATTCTGATTTATCG+TGG | 0.607000 | 4.3:+46694478 | None:intergenic |
| GGCCCCTGAACTGTCAGGAG+TGG | 0.615515 | 4.3:+46695158 | None:intergenic |
| GAAGTGAACACAACGATCGA+TGG | 0.624371 | 4.3:-46694778 | MS.gene66776:CDS |
| TGGAGCTAAACCCGGAAAGG+TGG | 0.639885 | 4.3:-46694848 | MS.gene66776:CDS |
| TGAAGGTACCAATGGTTTAG+GGG | 0.640788 | 4.3:+46695203 | None:intergenic |
| CTATTGGCAACAAAATCAGG+TGG | 0.642175 | 4.3:-46695039 | MS.gene66776:CDS |
| TGATAATTGGGATAAAGTAG+TGG | 0.645556 | 4.3:+46695281 | None:intergenic |
| GTCCATCGGAAAGAGAGTTG+AGG | 0.651728 | 4.3:+46694962 | None:intergenic |
| CTGTCAGGAGTGGAATCACT+GGG | 0.656389 | 4.3:+46695168 | None:intergenic |
| TTCCACTCCTGACAGTTCAG+GGG | 0.656521 | 4.3:-46695160 | MS.gene66776:CDS |
| ATTGGTACCTTCATTACCAG+AGG | 0.661510 | 4.3:-46695193 | MS.gene66776:CDS |
| TATTGGCAACAAAATCAGGT+GGG | 0.667970 | 4.3:-46695038 | MS.gene66776:CDS |
| CTGAATGTGATAAGTTACGG+TGG | 0.671159 | 4.3:-46694823 | MS.gene66776:CDS |
| GGGCTTAACAGATGAATCCG+AGG | 0.698996 | 4.3:+46694588 | None:intergenic |
| ATACATAATCTGAAATAACG+TGG | 0.702574 | 4.3:+46694917 | None:intergenic |
| GAAGTGTGAACATATCAACA+GGG | 0.726270 | 4.3:-46694801 | MS.gene66776:CDS |
| AAGTGTGAACATATCAACAG+GGG | 0.748931 | 4.3:-46694800 | MS.gene66776:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACATAATCTGAAATAACG+TGG | + | chr4.3:46694932-46694951 | None:intergenic | 25.0% |
| AAATGAATGTGTATGGAAAG+TGG | - | chr4.3:46695306-46695325 | MS.gene66776:CDS | 30.0% | |
| AATGAATGTGTATGGAAAGT+GGG | - | chr4.3:46695307-46695326 | MS.gene66776:CDS | 30.0% | |
| ACTGTGAAAATGAATGTGTA+TGG | - | chr4.3:46695299-46695318 | MS.gene66776:CDS | 30.0% | |
| GAACTGAATGTGATAAGTTA+CGG | - | chr4.3:46695020-46695039 | MS.gene66776:CDS | 30.0% | |
| TGATAATTGGGATAAAGTAG+TGG | + | chr4.3:46694568-46694587 | None:intergenic | 30.0% | |
| !! | CGTCTTGCTATTTATAAAGT+TGG | - | chr4.3:46695110-46695129 | MS.gene66776:CDS | 30.0% |
| !!! | ATTGTGTTGTTTTCATGAGT+CGG | + | chr4.3:46694764-46694783 | None:intergenic | 30.0% |
| AAGTGTGAACATATCAACAG+GGG | - | chr4.3:46695046-46695065 | MS.gene66776:CDS | 35.0% | |
| AGTACCAGAGTTATCATTTG+TGG | + | chr4.3:46695282-46695301 | None:intergenic | 35.0% | |
| CAACTATTGGCAACAAAATC+AGG | - | chr4.3:46694804-46694823 | MS.gene66776:CDS | 35.0% | |
| CCAACTCAATTCACAACTAT+TGG | - | chr4.3:46694791-46694810 | MS.gene66776:CDS | 35.0% | |
| CCAATAGTTGTGAATTGAGT+TGG | + | chr4.3:46694794-46694813 | None:intergenic | 35.0% | |
| GAAGTGTGAACATATCAACA+GGG | - | chr4.3:46695045-46695064 | MS.gene66776:CDS | 35.0% | |
| GCAACAGAAAAGAAATCCAT+AGG | + | chr4.3:46695149-46695168 | None:intergenic | 35.0% | |
| GTACCAGAGTTATCATTTGT+GGG | + | chr4.3:46695281-46695300 | None:intergenic | 35.0% | |
| TATTGGCAACAAAATCAGGT+GGG | - | chr4.3:46694808-46694827 | MS.gene66776:CDS | 35.0% | |
| ! | GGATTTCTTTTCTGTTGCTA+AGG | - | chr4.3:46695151-46695170 | MS.gene66776:CDS | 35.0% |
| ! | TTGTTTTCATGAGTCGGATT+AGG | + | chr4.3:46694758-46694777 | None:intergenic | 35.0% |
| !! | AATGAAGGTACCAATGGTTT+AGG | + | chr4.3:46694648-46694667 | None:intergenic | 35.0% |
| !! | ATGAAGGTACCAATGGTTTA+GGG | + | chr4.3:46694647-46694666 | None:intergenic | 35.0% |
| AACGACTCCAAAAGCTGATA+AGG | - | chr4.3:46695214-46695233 | MS.gene66776:CDS | 40.0% | |
| AAGCCCACAAATGATAACTC+TGG | - | chr4.3:46695275-46695294 | MS.gene66776:CDS | 40.0% | |
| ATTGGTACCTTCATTACCAG+AGG | - | chr4.3:46694653-46694672 | MS.gene66776:CDS | 40.0% | |
| CATCGTTGGAATCCTAAGAA+AGG | - | chr4.3:46694716-46694735 | MS.gene66776:CDS | 40.0% | |
| CTATTGGCAACAAAATCAGG+TGG | - | chr4.3:46694807-46694826 | MS.gene66776:CDS | 40.0% | |
| CTGAATGTGATAAGTTACGG+TGG | - | chr4.3:46695023-46695042 | MS.gene66776:CDS | 40.0% | |
| GATTAGGACGTTGAATGACT+TGG | + | chr4.3:46694742-46694761 | None:intergenic | 40.0% | |
| TAGGATTCCAACGATGTCAA+CGG | + | chr4.3:46694712-46694731 | None:intergenic | 40.0% | |
| TTGGGATAAAGTAGTGGTAG+TGG | + | chr4.3:46694562-46694581 | None:intergenic | 40.0% | |
| ! | GGAAGTGTGAACATATCAAC+AGG | - | chr4.3:46695044-46695063 | MS.gene66776:CDS | 40.0% |
| ! | TGAATGACTTGGCCTTTCTT+AGG | + | chr4.3:46694731-46694750 | None:intergenic | 40.0% |
| !! | TCCTGCTTTGAGTTGTGAAA+AGG | + | chr4.3:46694862-46694881 | None:intergenic | 40.0% |
| !! | TCTGGTAATGAAGGTACCAA+TGG | + | chr4.3:46694654-46694673 | None:intergenic | 40.0% |
| !! | TGAAGGTACCAATGGTTTAG+GGG | + | chr4.3:46694646-46694665 | None:intergenic | 40.0% |
| !! | TGTGAAAAGGCATTGTCATC+CGG | + | chr4.3:46694849-46694868 | None:intergenic | 40.0% |
| ACAGATGAATCCGAGGAATC+TGG | + | chr4.3:46695254-46695273 | None:intergenic | 45.0% | |
| ACATTCAGTTCCACCTTTCC+GGG | + | chr4.3:46695011-46695030 | None:intergenic | 45.0% | |
| AGCAGCAGCTGGTGATAATT+GGG | + | chr4.3:46694580-46694599 | None:intergenic | 45.0% | |
| ATTCCACTCCTGACAGTTCA+GGG | - | chr4.3:46694685-46694704 | MS.gene66776:CDS | 45.0% | |
| CACATTCAGTTCCACCTTTC+CGG | + | chr4.3:46695012-46695031 | None:intergenic | 45.0% | |
| GAAGTGAACACAACGATCGA+TGG | - | chr4.3:46695068-46695087 | MS.gene66776:CDS | 45.0% | |
| TTCCTCAACTCTCTTTCCGA+TGG | - | chr4.3:46694882-46694901 | MS.gene66776:CDS | 45.0% | |
| ! | GCCTTTTCACAACTCAAAGC+AGG | - | chr4.3:46694858-46694877 | MS.gene66776:CDS | 45.0% |
| ! | GCTGGTAATGTAGGGTGTAT+TGG | + | chr4.3:46694603-46694622 | None:intergenic | 45.0% |
| ! | GGCTTCTCCTTATCAGCTTT+TGG | + | chr4.3:46695224-46695243 | None:intergenic | 45.0% |
| ! | TGGCAAAGTGCTTCTTCCTA+TGG | - | chr4.3:46695130-46695149 | MS.gene66776:CDS | 45.0% |
| ! | TGGGTTGACAATTCTTGCAC+CGG | - | chr4.3:46694827-46694846 | MS.gene66776:CDS | 45.0% |
| ! | TGGTTGGAGCTGGTAATGTA+GGG | + | chr4.3:46694611-46694630 | None:intergenic | 45.0% |
| !!! | AAGTGGGCGTCTCTTGTTTT+TGG | - | chr4.3:46695323-46695342 | MS.gene66776:CDS | 45.0% |
| !!! | GCTTTTGGAGTCGTTGTTGA+AGG | + | chr4.3:46695209-46695228 | None:intergenic | 45.0% |
| AACCCTGTGAGAACACTTGC+TGG | - | chr4.3:46694978-46694997 | MS.gene66776:CDS | 50.0% | |
| ACTGTCAGGAGTGGAATCAC+TGG | + | chr4.3:46694682-46694701 | None:intergenic | 50.0% | |
| CAGCTCGAGTTTCTGTCCAT+CGG | + | chr4.3:46694901-46694920 | None:intergenic | 50.0% | |
| CTCCAGCAAGTGTTCTCACA+GGG | + | chr4.3:46694983-46695002 | None:intergenic | 50.0% | |
| CTGTCAGGAGTGGAATCACT+GGG | + | chr4.3:46694681-46694700 | None:intergenic | 50.0% | |
| GAGCAGCAGCTGGTGATAAT+TGG | + | chr4.3:46694581-46694600 | None:intergenic | 50.0% | |
| GATTCCACTCCTGACAGTTC+AGG | - | chr4.3:46694684-46694703 | MS.gene66776:CDS | 50.0% | |
| GCCATTATCGCCAGATTCCT+CGG | - | chr4.3:46695241-46695260 | MS.gene66776:CDS | 50.0% | |
| GGGCTTAACAGATGAATCCG+AGG | + | chr4.3:46695261-46695280 | None:intergenic | 50.0% | |
| GTCCATCGGAAAGAGAGTTG+AGG | + | chr4.3:46694887-46694906 | None:intergenic | 50.0% | |
| TCCGAGGAATCTGGCGATAA+TGG | + | chr4.3:46695245-46695264 | None:intergenic | 50.0% | |
| TTCCACTCCTGACAGTTCAG+GGG | - | chr4.3:46694686-46694705 | MS.gene66776:CDS | 50.0% | |
| ! | ACACTTGCTGGAGCTAAACC+CGG | - | chr4.3:46694990-46695009 | MS.gene66776:CDS | 50.0% |
| ! | GTGGTTGGAGCTGGTAATGT+AGG | + | chr4.3:46694612-46694631 | None:intergenic | 50.0% |
| AATGGTTTAGGGGCTGCAGC+TGG | + | chr4.3:46694636-46694655 | None:intergenic | 55.0% | |
| ACCGACGAAGGGACTGTCTT+TGG | - | chr4.3:46695175-46695194 | MS.gene66776:CDS | 55.0% | |
| AGCTGCAGCCCCTAAACCAT+TGG | - | chr4.3:46694635-46694654 | MS.gene66776:CDS | 55.0% | |
| GCCAAAGACAGTCCCTTCGT+CGG | + | chr4.3:46695179-46695198 | None:intergenic | 55.0% | |
| GCTCCAGCAAGTGTTCTCAC+AGG | + | chr4.3:46694984-46695003 | None:intergenic | 55.0% | |
| GGAGTCGTTGTTGAAGGCTC+TGG | + | chr4.3:46695203-46695222 | None:intergenic | 55.0% | |
| TGCTGGAGCTAAACCCGGAA+AGG | - | chr4.3:46694995-46695014 | MS.gene66776:CDS | 55.0% | |
| TGGAGCTAAACCCGGAAAGG+TGG | - | chr4.3:46694998-46695017 | MS.gene66776:CDS | 55.0% | |
| ! | CTGGGTGCCTCTGGTAATGA+AGG | + | chr4.3:46694663-46694682 | None:intergenic | 55.0% |
| !! | GTTGCTAAGGCACCGACGAA+GGG | - | chr4.3:46695164-46695183 | MS.gene66776:CDS | 55.0% |
| !! | TGTTGCTAAGGCACCGACGA+AGG | - | chr4.3:46695163-46695182 | MS.gene66776:CDS | 55.0% |
| GGGTGTATTGGAGCAGCAGC+TGG | + | chr4.3:46694591-46694610 | None:intergenic | 60.0% | |
| GTGGAATCACTGGGTGCCTC+TGG | + | chr4.3:46694672-46694691 | None:intergenic | 60.0% | |
| TCAACGGCCCCTGAACTGTC+AGG | + | chr4.3:46694696-46694715 | None:intergenic | 60.0% | |
| TCAGGGGCCGTTGACATCGT+TGG | - | chr4.3:46694702-46694721 | MS.gene66776:CDS | 60.0% | |
| TTTAGGGGCTGCAGCTGGTG+TGG | + | chr4.3:46694631-46694650 | None:intergenic | 60.0% | |
| GCAGCTGGTGTGGTTGGAGC+TGG | + | chr4.3:46694621-46694640 | None:intergenic | 65.0% | |
| GGCCCCTGAACTGTCAGGAG+TGG | + | chr4.3:46694691-46694710 | None:intergenic | 65.0% | |
| GGGGCTGCAGCTGGTGTGGT+TGG | + | chr4.3:46694627-46694646 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 46694492 | 46695376 | 46694492 | ID=MS.gene66776 |
| chr4.3 | mRNA | 46694492 | 46695376 | 46694492 | ID=MS.gene66776.t1;Parent=MS.gene66776 |
| chr4.3 | exon | 46694492 | 46695376 | 46694492 | ID=MS.gene66776.t1.exon1;Parent=MS.gene66776.t1 |
| chr4.3 | CDS | 46694492 | 46695376 | 46694492 | ID=cds.MS.gene66776.t1;Parent=MS.gene66776.t1 |
| Gene Sequence |
| Protein sequence |
