Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66804.t1 | XP_003606227.2 | 90.4 | 1337 | 48 | 4 | 1 | 1319 | 1 | 1275 | 0.00E+00 | 2376.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66804.t1 | F4HW04 | 73.5 | 1330 | 255 | 8 | 2 | 1313 | 5 | 1254 | 0.0e+00 | 1920.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66804.t1 | G7JKW4 | 90.4 | 1337 | 48 | 4 | 1 | 1319 | 1 | 1275 | 0.0e+00 | 2376.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049989 | MS.gene66804 | 0.802765 | 4.80E-49 | -1.69E-46 |
| MS.gene061260 | MS.gene66804 | 0.831028 | 2.11E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66804.t1 | MTR_4g054980 | 96.975 | 628 | 15 | 2 | 1 | 628 | 1 | 624 | 0.0 | 1268 |
| MS.gene66804.t1 | MTR_4g054980 | 91.692 | 662 | 35 | 5 | 671 | 1313 | 609 | 1269 | 0.0 | 1221 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66804.t1 | AT1G08260 | 79.266 | 627 | 126 | 2 | 2 | 628 | 5 | 627 | 0.0 | 1054 |
| MS.gene66804.t1 | AT1G08260 | 73.525 | 661 | 139 | 7 | 671 | 1313 | 612 | 1254 | 0.0 | 961 |
| MS.gene66804.t1 | AT1G08260 | 79.266 | 627 | 126 | 2 | 2 | 628 | 5 | 627 | 0.0 | 1053 |
| MS.gene66804.t1 | AT1G08260 | 73.525 | 661 | 139 | 7 | 671 | 1313 | 612 | 1254 | 0.0 | 961 |
| MS.gene66804.t1 | AT2G27120 | 76.874 | 627 | 135 | 4 | 2 | 628 | 3 | 619 | 0.0 | 1014 |
| MS.gene66804.t1 | AT2G27120 | 69.729 | 664 | 155 | 9 | 671 | 1315 | 604 | 1240 | 0.0 | 901 |
| MS.gene66804.t1 | AT2G27120 | 76.874 | 627 | 135 | 4 | 2 | 628 | 3 | 619 | 0.0 | 1014 |
| MS.gene66804.t1 | AT2G27120 | 69.729 | 664 | 155 | 9 | 671 | 1315 | 604 | 1240 | 0.0 | 901 |
| MS.gene66804.t1 | AT2G27120 | 76.874 | 627 | 135 | 4 | 2 | 628 | 3 | 619 | 0.0 | 1014 |
| MS.gene66804.t1 | AT2G27120 | 69.611 | 668 | 157 | 9 | 671 | 1319 | 604 | 1244 | 0.0 | 903 |
Find 273 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCTTGTTCATTGACTTAA+AGG | 0.103483 | 4.3:-46211881 | None:intergenic |
| TTCTGAATAGCATTCCTTTA+AGG | 0.131604 | 4.3:-46210882 | None:intergenic |
| CCCATGCAAAACAATCTAAA+TGG | 0.183551 | 4.3:-46201896 | None:intergenic |
| GAAGAACTCGAAGCTAAATT+AGG | 0.197457 | 4.3:+46198087 | MS.gene66804:CDS |
| TATCTCTCCGGTCCCATTTC+CGG | 0.217533 | 4.3:-46198023 | None:intergenic |
| GTTGAGTAGTTTCTGCTTCT+TGG | 0.231968 | 4.3:-46198055 | None:intergenic |
| CGAACAGTGTCAACATAAAA+TGG | 0.233494 | 4.3:-46206987 | None:intergenic |
| TTACCTTCTCCCCGTTAATA+TGG | 0.234254 | 4.3:-46200176 | None:intergenic |
| TCTTCGGGGTTCACCTCTTT+TGG | 0.234774 | 4.3:-46203348 | None:intergenic |
| AATTATGATGATTTCATATA+TGG | 0.245463 | 4.3:+46200707 | MS.gene66804:CDS |
| GTTATTCTGCATCATGTTAT+TGG | 0.248159 | 4.3:+46205318 | MS.gene66804:CDS |
| TCCTGATTGGTTGCATAAAA+AGG | 0.254420 | 4.3:+46211813 | MS.gene66804:CDS |
| GCTTCATAATGGCGTATAAT+TGG | 0.264780 | 4.3:-46212021 | None:intergenic |
| AACCCTTCGAACTCTGGTTT+TGG | 0.265457 | 4.3:-46201174 | None:intergenic |
| GGATCAGATTGGTGCTTGTT+AGG | 0.271482 | 4.3:-46204281 | None:intergenic |
| TCTGCATGGATCAACCTTAA+AGG | 0.276947 | 4.3:+46210868 | MS.gene66804:CDS |
| TCTTAATTGTTGTTCGGCCT+TGG | 0.277991 | 4.3:-46206792 | None:intergenic |
| CCAGGGTTGTTCATCCTGAT+TGG | 0.287192 | 4.3:+46211800 | MS.gene66804:CDS |
| CCGCAACGATGAACCGGAAA+TGG | 0.292381 | 4.3:+46198010 | None:intergenic |
| TTTCTTTGATTGGCCATTCC+TGG | 0.300012 | 4.3:+46201411 | MS.gene66804:CDS |
| GCGCATTACGTATCCATAAA+AGG | 0.301036 | 4.3:-46207514 | None:intergenic |
| GCAAAGCGTACCATGTCTTC+GGG | 0.302903 | 4.3:-46203363 | None:intergenic |
| ACTTGAGCCATCTGCCTTTG+AGG | 0.306283 | 4.3:+46204412 | MS.gene66804:CDS |
| GATTGAGAAAATCTTATTTA+CGG | 0.307625 | 4.3:+46200050 | MS.gene66804:CDS |
| ACTAAGCCGCTGCTTGTAAT+AGG | 0.309838 | 4.3:-46211632 | None:intergenic |
| AGCAAGTCTTTAGCTGATTA+TGG | 0.310626 | 4.3:+46211167 | MS.gene66804:CDS |
| TGAAGTTCTATGTCCGAAAA+TGG | 0.314349 | 4.3:+46211563 | MS.gene66804:CDS |
| GATGGGCTGCCCGTCGTTCC+AGG | 0.314966 | 4.3:-46201429 | None:intergenic |
| AAACGTCTTGCTGACTTTCT+TGG | 0.320459 | 4.3:+46211221 | MS.gene66804:CDS |
| GCCAAGGCAATACAACTTAA+AGG | 0.329221 | 4.3:+46205402 | MS.gene66804:CDS |
| GTGAATTTAATAGAACAAAA+TGG | 0.330649 | 4.3:+46199700 | MS.gene66804:intron |
| GGAACAGCACGCTCACTTAC+AGG | 0.334550 | 4.3:-46211424 | None:intergenic |
| TGCAAAGCGTACCATGTCTT+CGG | 0.335924 | 4.3:-46203364 | None:intergenic |
| TATGAGAAAACCACAATCTA+AGG | 0.337688 | 4.3:-46201345 | None:intergenic |
| ATCTAAATACACCACTTTCT+AGG | 0.339473 | 4.3:-46204367 | None:intergenic |
| GCTTCTCGGAGTTCGGTAAC+TGG | 0.344196 | 4.3:-46206942 | None:intergenic |
| CCTCTGTGAAATGTTGCTTA+TGG | 0.345635 | 4.3:+46204125 | MS.gene66804:CDS |
| GTTCATTATTAGCTTCATAA+TGG | 0.358576 | 4.3:-46212032 | None:intergenic |
| TTCGTAGCTACGTAGAAATA+AGG | 0.360307 | 4.3:-46199511 | None:intergenic |
| TGAAATGTTGCTTATGGTTC+AGG | 0.360723 | 4.3:+46204131 | MS.gene66804:CDS |
| GGCATCTATGTGACATATAA+TGG | 0.366635 | 4.3:+46201385 | MS.gene66804:CDS |
| ACCTTTAAGTTGTATTGCCT+TGG | 0.376577 | 4.3:-46205403 | None:intergenic |
| AAGAACTCGAAGCTAAATTA+GGG | 0.376742 | 4.3:+46198088 | MS.gene66804:CDS |
| GGCTGTAACAAAAGCAAAGT+TGG | 0.377306 | 4.3:+46203317 | MS.gene66804:intron |
| AATTCAGAATGCTCGCTTGC+TGG | 0.378173 | 4.3:+46207708 | MS.gene66804:CDS |
| GAAGCTAATCAAAGTGTTCC+AGG | 0.378755 | 4.3:+46210335 | MS.gene66804:CDS |
| GCCTATGAGTCCATATTAAC+GGG | 0.380949 | 4.3:+46200166 | MS.gene66804:CDS |
| CCCCGTTAATATGGACTCAT+AGG | 0.381177 | 4.3:-46200167 | None:intergenic |
| AGTAGAGGGAAAGATGGATT+TGG | 0.386694 | 4.3:+46204764 | MS.gene66804:CDS |
| AAATTTGTACCTTGAGGCCT+TGG | 0.391310 | 4.3:-46201950 | None:intergenic |
| GATACAATGGTCAAAGATAA+AGG | 0.391993 | 4.3:+46211245 | MS.gene66804:CDS |
| TGATCTTTACTTTGTCAAAC+AGG | 0.392197 | 4.3:+46199360 | MS.gene66804:CDS |
| AAGATCTGCTCCTTCTCACT+TGG | 0.393522 | 4.3:+46205262 | MS.gene66804:CDS |
| ATCTCATCCGTAACAATTGA+TGG | 0.394446 | 4.3:-46206485 | None:intergenic |
| CGGTTTGTTAAAATTATGTT+TGG | 0.394571 | 4.3:-46205104 | None:intergenic |
| AGTGGCAAGAGAGAAAATAA+AGG | 0.395096 | 4.3:-46204055 | None:intergenic |
| CTTAATTGTTGTTCGGCCTT+GGG | 0.395320 | 4.3:-46206791 | None:intergenic |
| TAGTGGTGTCAACCTTGTTA+TGG | 0.396170 | 4.3:+46211930 | MS.gene66804:CDS |
| GAAGATCAATTATGCAATCT+AGG | 0.397657 | 4.3:-46200362 | None:intergenic |
| AGACACTCACGGATCCAAAT+AGG | 0.398415 | 4.3:+46210039 | MS.gene66804:intron |
| ATAATGGCGATTTCTTTGAT+TGG | 0.400523 | 4.3:+46201401 | MS.gene66804:CDS |
| CCATGCAAAACAATCTAAAT+GGG | 0.401730 | 4.3:-46201895 | None:intergenic |
| TATCTGCAATATCCTTTCCT+TGG | 0.401777 | 4.3:-46211106 | None:intergenic |
| TAACAATATGTTACAGTGTT+GGG | 0.404687 | 4.3:+46207407 | MS.gene66804:CDS |
| CCTTTGCGCAAAACCTCATC+TGG | 0.408891 | 4.3:-46204093 | None:intergenic |
| AACTAGACACAGATGGTATC+TGG | 0.412277 | 4.3:+46207755 | MS.gene66804:CDS |
| CGCTTGCTGGTAGAGAAAAT+AGG | 0.413884 | 4.3:+46207721 | MS.gene66804:CDS |
| GGCTTCCTCAGGCATATAAA+CGG | 0.414839 | 4.3:+46206907 | MS.gene66804:intron |
| GCATGTTGTTGAAAGAAATA+AGG | 0.416258 | 4.3:+46200123 | MS.gene66804:CDS |
| AACGCAACTGTAGACTTTGC+AGG | 0.419174 | 4.3:-46199338 | None:intergenic |
| TACGCAAGCTTGAGTGGGTT+TGG | 0.419242 | 4.3:+46206549 | MS.gene66804:CDS |
| ACGTGATAGTTATCTTCCTC+AGG | 0.422232 | 4.3:+46201923 | MS.gene66804:CDS |
| TTCTTTCAACAACATGCATC+AGG | 0.424703 | 4.3:-46200117 | None:intergenic |
| GATTCCAGCTTCTCGGAGTT+CGG | 0.426865 | 4.3:-46206949 | None:intergenic |
| AGATATTAAAATTGTAGAAA+AGG | 0.429194 | 4.3:+46199772 | MS.gene66804:CDS |
| GAACGACGGGCAGCCCATCA+TGG | 0.431910 | 4.3:+46201433 | MS.gene66804:CDS |
| AAGTTGTATTGCCTTGGCCC+TGG | 0.432402 | 4.3:-46205397 | None:intergenic |
| TTTAGCTTCGAGTTCTTCTT+CGG | 0.435402 | 4.3:-46198082 | None:intergenic |
| GCATGCAGATTCCAGCTTCT+CGG | 0.435975 | 4.3:-46206956 | None:intergenic |
| TGCAGTCATCTTATGAGGAC+GGG | 0.439253 | 4.3:+46199311 | MS.gene66804:intron |
| GATCAGATTGGTGCTTGTTA+GGG | 0.439935 | 4.3:-46204280 | None:intergenic |
| TCACATATGACTCAGATATA+CGG | 0.442344 | 4.3:+46200532 | MS.gene66804:intron |
| TGCTTTGCAGTCATCTTATG+AGG | 0.445682 | 4.3:+46199306 | MS.gene66804:intron |
| GTGGCAAGAGAGAAAATAAA+GGG | 0.447379 | 4.3:-46204054 | None:intergenic |
| AATTAAAATTCCTTCCTCCT+TGG | 0.449492 | 4.3:-46210232 | None:intergenic |
| CGCAACGATGAACCGGAAAT+GGG | 0.450228 | 4.3:+46198011 | None:intergenic |
| CATGAATCTTATCACATAGT+TGG | 0.450841 | 4.3:-46205356 | None:intergenic |
| TCTCCGCCGCAACGATGAAC+CGG | 0.451297 | 4.3:+46198004 | None:intergenic |
| TGAGATTGTCAGCTTCCGTT+TGG | 0.451430 | 4.3:-46209815 | None:intergenic |
| TGATTTCATATATGGTAGAT+AGG | 0.452408 | 4.3:+46200715 | MS.gene66804:CDS |
| GTGTGTTGGGGATGATATAG+AGG | 0.457318 | 4.3:+46201137 | MS.gene66804:intron |
| CTATTCAGAAGTTGCTAAAG+AGG | 0.457754 | 4.3:+46210895 | MS.gene66804:CDS |
| GTTAATGACATGGAGGACTT+TGG | 0.459747 | 4.3:+46211964 | MS.gene66804:CDS |
| ATTGTTGTTCGGCCTTGGGC+AGG | 0.461284 | 4.3:-46206787 | None:intergenic |
| AGCCTATGAGTCCATATTAA+CGG | 0.461779 | 4.3:+46200165 | MS.gene66804:CDS |
| GCAGGCGTTGTCACATATAC+CGG | 0.462612 | 4.3:+46207676 | MS.gene66804:CDS |
| CAACATTTGCCGCAAAGAAA+AGG | 0.464244 | 4.3:+46206579 | MS.gene66804:CDS |
| TGGAAACCTTGTTATCTCTC+CGG | 0.465340 | 4.3:-46198035 | None:intergenic |
| ATTCCTTCCTCCTTGGAAGC+AGG | 0.468173 | 4.3:-46210225 | None:intergenic |
| ATAAAATTCTTACAAGATCC+AGG | 0.468317 | 4.3:-46199799 | None:intergenic |
| GGCTTTCATAACGTCGTCTC+AGG | 0.472774 | 4.3:-46199742 | None:intergenic |
| GAAGAATGCTATCATGGAAA+AGG | 0.472844 | 4.3:+46204812 | MS.gene66804:CDS |
| GCTGTAACAAAAGCAAAGTT+GGG | 0.477637 | 4.3:+46203318 | MS.gene66804:CDS |
| ATTGAGTCATAGTCAGCATC+AGG | 0.478638 | 4.3:-46200687 | None:intergenic |
| TATTCCTGCTGCAATGCAAA+AGG | 0.480500 | 4.3:+46211678 | MS.gene66804:CDS |
| TGAATGCTCTATTGAATTTG+AGG | 0.483434 | 4.3:+46210082 | MS.gene66804:CDS |
| AAAACTTCTCCGGATCAGAT+TGG | 0.484760 | 4.3:-46204292 | None:intergenic |
| TTTCAATGTGACATGAATCA+AGG | 0.485498 | 4.3:+46201849 | MS.gene66804:CDS |
| AATTGAACTTACGGATGAAA+AGG | 0.487877 | 4.3:-46198157 | None:intergenic |
| CATAGTAGCAAGTGAGCCTA+AGG | 0.488671 | 4.3:+46211283 | MS.gene66804:CDS |
| AGGTTGCAAATCCTGTCCCC+AGG | 0.488878 | 4.3:+46211782 | MS.gene66804:intron |
| CAAAACCTCATCTGGCGACA+TGG | 0.491081 | 4.3:-46204085 | None:intergenic |
| GTTACCGAACTCCGAGAAGC+TGG | 0.491872 | 4.3:+46206945 | MS.gene66804:CDS |
| GCAGCCTCCATCAATTGTTA+CGG | 0.496016 | 4.3:+46206478 | MS.gene66804:intron |
| TGAGGTGGATGGACCTTACA+AGG | 0.496127 | 4.3:+46210100 | MS.gene66804:CDS |
| AAGGGAAGGAGTTCTACATT+AGG | 0.497304 | 4.3:+46211991 | MS.gene66804:CDS |
| CTCCAAAACCAGAGTTCGAA+GGG | 0.497679 | 4.3:+46201172 | MS.gene66804:CDS |
| CTTGTCTACGCAAGCTTGAG+TGG | 0.497713 | 4.3:+46206543 | MS.gene66804:CDS |
| TGATTCTTATAAAACTTCTC+CGG | 0.498720 | 4.3:-46204302 | None:intergenic |
| AGGCGGAATTGAAGATCAAA+AGG | 0.498816 | 4.3:-46205292 | None:intergenic |
| GGGTTTGATCTCTTCTCTGA+AGG | 0.499936 | 4.3:+46198108 | MS.gene66804:CDS |
| CCTTGGCCCTGGTGTGTGCA+TGG | 0.500150 | 4.3:-46205386 | None:intergenic |
| TCGTAGCTACGTAGAAATAA+GGG | 0.500230 | 4.3:-46199510 | None:intergenic |
| TATTCGATCTTGCAGGAGCT+GGG | 0.501413 | 4.3:+46201825 | MS.gene66804:intron |
| TGCACTTCCATGCACACACC+AGG | 0.501611 | 4.3:+46205379 | MS.gene66804:CDS |
| TAATGGCGTATAATTGGTCT+AGG | 0.505227 | 4.3:-46212015 | None:intergenic |
| CATATGCAAGAGGTGAAACC+TGG | 0.507303 | 4.3:+46201364 | MS.gene66804:CDS |
| TCAGCATCAGGAAACTTCAA+TGG | 0.507979 | 4.3:-46200675 | None:intergenic |
| AATGATAATTCCTGCTTCCA+AGG | 0.510064 | 4.3:+46210215 | MS.gene66804:CDS |
| GTAACAATATGTTACAGTGT+TGG | 0.512195 | 4.3:+46207406 | MS.gene66804:CDS |
| GCTTCCTCAGGCATATAAAC+GGG | 0.515626 | 4.3:+46206908 | MS.gene66804:intron |
| TAGATGGTACTCCATGGAAA+TGG | 0.515782 | 4.3:+46207654 | MS.gene66804:CDS |
| AGATTGAGCTCCTTAGATTG+TGG | 0.517125 | 4.3:+46201335 | MS.gene66804:intron |
| CAGAATTCAGAGAAGTTCAA+TGG | 0.517166 | 4.3:+46212054 | MS.gene66804:CDS |
| GCTGCCCGTCGTTCCAGGAA+TGG | 0.517659 | 4.3:-46201424 | None:intergenic |
| AGATCTGCTCCTTCTCACTT+GGG | 0.521712 | 4.3:+46205263 | MS.gene66804:CDS |
| CCATCTGTGTCTAGTTCAAG+TGG | 0.523227 | 4.3:-46207748 | None:intergenic |
| TGGCGACATGGGTATAATAG+TGG | 0.523337 | 4.3:-46204073 | None:intergenic |
| TTGGCCATTCCTGGAACGAC+GGG | 0.524641 | 4.3:+46201420 | MS.gene66804:CDS |
| ATTGGCCATTCCTGGAACGA+CGG | 0.524790 | 4.3:+46201419 | MS.gene66804:CDS |
| GGTGACAAATGTTCAAAATG+AGG | 0.525723 | 4.3:+46201203 | MS.gene66804:CDS |
| GGATGAACAACCCTGGGGAC+AGG | 0.526311 | 4.3:-46211793 | None:intergenic |
| GCATTCGCTCTATAATTGAC+TGG | 0.526979 | 4.3:+46211608 | MS.gene66804:CDS |
| CACATTCATCAGTTGTTGCA+CGG | 0.527979 | 4.3:-46200086 | None:intergenic |
| AAACTTCAATGGAAGTTTCG+TGG | 0.529458 | 4.3:-46200664 | None:intergenic |
| TTAATAGAACAAAATGGAGA+TGG | 0.529809 | 4.3:+46199706 | MS.gene66804:intron |
| ATAGCAAAGCGAACATGGTA+AGG | 0.530373 | 4.3:-46200399 | None:intergenic |
| TTTAAAGAAATACTGCCAAA+AGG | 0.530435 | 4.3:+46206826 | MS.gene66804:CDS |
| TTCAATGTGACATGAATCAA+GGG | 0.530630 | 4.3:+46201850 | MS.gene66804:CDS |
| TAACAAGCACCAATCTGATC+CGG | 0.532125 | 4.3:+46204283 | MS.gene66804:CDS |
| GATAGAACTGTAGATTATCA+AGG | 0.532652 | 4.3:+46212153 | MS.gene66804:CDS |
| CATGGAGGACTTTGGAAACA+AGG | 0.535859 | 4.3:+46211972 | MS.gene66804:CDS |
| TGAAGTGAAGAATGCTATCA+TGG | 0.538105 | 4.3:+46204806 | MS.gene66804:CDS |
| CAATCAGGATGAACAACCCT+GGG | 0.541132 | 4.3:-46211799 | None:intergenic |
| CACTGCATCAGAAACAGAAT+AGG | 0.542703 | 4.3:-46203998 | None:intergenic |
| TATAAGAGTAGAGGGAAAGA+TGG | 0.543579 | 4.3:+46204758 | MS.gene66804:CDS |
| ATGTTGGTGTGTCCAACGAT+GGG | 0.546275 | 4.3:+46200571 | MS.gene66804:CDS |
| AACGACGGGCAGCCCATCAT+GGG | 0.546834 | 4.3:+46201434 | MS.gene66804:CDS |
| CTGTTTGAAAAGTTTCTGCA+TGG | 0.547367 | 4.3:+46210854 | MS.gene66804:CDS |
| CAGGCGTTGTCACATATACC+GGG | 0.548870 | 4.3:+46207677 | MS.gene66804:CDS |
| TGGTACTCCATGGAAATGGC+AGG | 0.548958 | 4.3:+46207658 | MS.gene66804:CDS |
| CGTGATAGTTATCTTCCTCA+GGG | 0.553522 | 4.3:+46201924 | MS.gene66804:CDS |
| TTATATGTCACATAGATGCC+AGG | 0.554225 | 4.3:-46201382 | None:intergenic |
| CAATATGCTATAAGAGTAGA+GGG | 0.554984 | 4.3:+46204750 | MS.gene66804:CDS |
| CCATGCACACACCAGGGCCA+AGG | 0.555023 | 4.3:+46205386 | MS.gene66804:CDS |
| TACATCCAAATGATAAATGA+GGG | 0.555165 | 4.3:-46205069 | None:intergenic |
| CTTGAGAGTGAGACGTACAT+AGG | 0.555720 | 4.3:+46204329 | MS.gene66804:CDS |
| TCAGTTTCAAATATTGCCAC+AGG | 0.556177 | 4.3:-46211445 | None:intergenic |
| TGTCAATAGCAAAGCGAACA+TGG | 0.559933 | 4.3:-46200404 | None:intergenic |
| CTCAAGTGTAACCCCATCGT+TGG | 0.562995 | 4.3:-46200583 | None:intergenic |
| CGATGAACCGGAAATGGGAC+CGG | 0.563321 | 4.3:+46198016 | None:intergenic |
| CTACATCCAAATGATAAATG+AGG | 0.563971 | 4.3:-46205070 | None:intergenic |
| CATATTGTAGATCTCGATCA+AGG | 0.564560 | 4.3:-46204734 | None:intergenic |
| CAAAACCTTTCAGTTCTGCA+AGG | 0.565486 | 4.3:-46210290 | None:intergenic |
| AATTGTAGAAAAGGAAGACC+TGG | 0.566801 | 4.3:+46199781 | MS.gene66804:CDS |
| TTGCAGTCATCTTATGAGGA+CGG | 0.567663 | 4.3:+46199310 | MS.gene66804:intron |
| TGCATTTCAGAGACTCCAAA+CGG | 0.568011 | 4.3:+46209800 | MS.gene66804:CDS |
| ACAATATGCTATAAGAGTAG+AGG | 0.569438 | 4.3:+46204749 | MS.gene66804:CDS |
| AAGCTTGAGTGGGTTTGGCG+TGG | 0.569542 | 4.3:+46206554 | MS.gene66804:CDS |
| AAAACCTTTCAGTTCTGCAA+GGG | 0.570017 | 4.3:-46210289 | None:intergenic |
| TATCTTCCTCAGGGGAGCCA+AGG | 0.571840 | 4.3:+46201933 | MS.gene66804:CDS |
| AGTCCATATTAACGGGGAGA+AGG | 0.572500 | 4.3:+46200173 | MS.gene66804:CDS |
| TGTTATGCTTAATGTTGATG+TGG | 0.573088 | 4.3:+46209846 | MS.gene66804:CDS |
| ATTGAGTCGGAGTTTGTAGA+CGG | 0.573787 | 4.3:+46206731 | MS.gene66804:CDS |
| TTTATGTTGACACTGTTCGC+AGG | 0.574355 | 4.3:+46206991 | MS.gene66804:CDS |
| GGTTGCAAATCCTGTCCCCA+GGG | 0.574559 | 4.3:+46211783 | MS.gene66804:intron |
| TCAGGGGAGCCAAGGCCTCA+AGG | 0.575017 | 4.3:+46201941 | MS.gene66804:CDS |
| GATGTTGGTGTGTCCAACGA+TGG | 0.577761 | 4.3:+46200570 | MS.gene66804:CDS |
| GGATCCCTTGCAGAACTGAA+AGG | 0.578239 | 4.3:+46210285 | MS.gene66804:CDS |
| TATACCCATGTCGCCAGATG+AGG | 0.578694 | 4.3:+46204080 | MS.gene66804:CDS |
| GACAACGCCTGCCATTTCCA+TGG | 0.580233 | 4.3:-46207665 | None:intergenic |
| TTGAGTCGGAGTTTGTAGAC+GGG | 0.580876 | 4.3:+46206732 | MS.gene66804:CDS |
| GCAATATTTGAAACTGATGC+TGG | 0.582810 | 4.3:+46211451 | MS.gene66804:CDS |
| TTGCTAAAGAGGCAAACCGC+TGG | 0.583860 | 4.3:+46210906 | MS.gene66804:CDS |
| AAAACCTCATCTGGCGACAT+GGG | 0.584284 | 4.3:-46204084 | None:intergenic |
| TGCATCAGAAACAGAATAGG+AGG | 0.584719 | 4.3:-46203995 | None:intergenic |
| GAACTGTAGATTATCAAGGA+TGG | 0.585665 | 4.3:+46212157 | MS.gene66804:CDS |
| TGCAAGGTCTCATCAGATGT+TGG | 0.586192 | 4.3:+46211586 | MS.gene66804:CDS |
| TCATATATGGTAGATAGGCA+AGG | 0.586662 | 4.3:+46200720 | MS.gene66804:CDS |
| TTGTCTACGCAAGCTTGAGT+GGG | 0.588583 | 4.3:+46206544 | MS.gene66804:CDS |
| CAGATATACGGTGTGGCCAG+TGG | 0.590465 | 4.3:+46200544 | MS.gene66804:intron |
| CCAATCAGGATGAACAACCC+TGG | 0.591941 | 4.3:-46211800 | None:intergenic |
| ACTCCAAAACCAGAGTTCGA+AGG | 0.593623 | 4.3:+46201171 | MS.gene66804:CDS |
| TCTATTGAATTTGAGGTGGA+TGG | 0.595437 | 4.3:+46210089 | MS.gene66804:CDS |
| ATTCCTGCTTCCAAGGAGGA+AGG | 0.596532 | 4.3:+46210222 | MS.gene66804:CDS |
| AGAGGTGAACCCCGAAGACA+TGG | 0.598278 | 4.3:+46203353 | MS.gene66804:CDS |
| GTTGGGTTATGATCCAAAAG+AGG | 0.599511 | 4.3:+46203335 | MS.gene66804:CDS |
| AGGATCGCACCCAAGTGAGA+AGG | 0.599616 | 4.3:-46205272 | None:intergenic |
| CTTGTTAGGGCAGATAACAT+TGG | 0.599746 | 4.3:-46204267 | None:intergenic |
| CATATATGGTAGATAGGCAA+GGG | 0.600068 | 4.3:+46200721 | MS.gene66804:CDS |
| TTGTAGACGGGGTAAATGAA+AGG | 0.600610 | 4.3:+46206744 | MS.gene66804:CDS |
| TGACTTTCTTGGTGATACAA+TGG | 0.604425 | 4.3:+46211232 | MS.gene66804:CDS |
| CTTTGCAAAGGAAAAGCCGC+AGG | 0.608250 | 4.3:+46203380 | MS.gene66804:CDS |
| CAACAAACCTCAAAGGCAGA+TGG | 0.608590 | 4.3:-46204419 | None:intergenic |
| ACACACCAACATCATACCAC+TGG | 0.608646 | 4.3:-46200560 | None:intergenic |
| TCTAAAGAAGCAAATTGAGT+CGG | 0.611212 | 4.3:+46206718 | MS.gene66804:CDS |
| AATATCACAGTACCTGAAGC+CGG | 0.614786 | 4.3:-46205124 | None:intergenic |
| CTTCCTGTTGTACAGAACCA+AGG | 0.615726 | 4.3:+46211089 | MS.gene66804:intron |
| AGACATGGTACGCTTTGCAA+AGG | 0.616128 | 4.3:+46203368 | MS.gene66804:CDS |
| GGGTGCTAGATGGTACTCCA+TGG | 0.616188 | 4.3:+46207648 | MS.gene66804:CDS |
| ATCAGCTAAAGACTTGCTCA+TGG | 0.618359 | 4.3:-46211162 | None:intergenic |
| CAGTCTCATCAACCATAACA+AGG | 0.619493 | 4.3:-46211942 | None:intergenic |
| ACACCTGTTACAGTCATACA+AGG | 0.620154 | 4.3:+46204244 | MS.gene66804:intron |
| GTTCGCTTTGCTATTGACAA+CGG | 0.621823 | 4.3:+46200408 | MS.gene66804:CDS |
| ACGATGGGGTTACACTTGAG+AGG | 0.622622 | 4.3:+46200586 | MS.gene66804:CDS |
| TGTGGCCAGTGGTATGATGT+TGG | 0.623291 | 4.3:+46200555 | MS.gene66804:CDS |
| ATGGAGGACTTTGGAAACAA+GGG | 0.626822 | 4.3:+46211973 | MS.gene66804:CDS |
| TAATACAAATGATCAGTACC+AGG | 0.630315 | 4.3:+46209876 | MS.gene66804:CDS |
| CCACTTGAACTAGACACAGA+TGG | 0.630998 | 4.3:+46207748 | MS.gene66804:CDS |
| GCAGTCATCTTATGAGGACG+GGG | 0.634887 | 4.3:+46199312 | MS.gene66804:intron |
| ACTGGTCCTATTACAAGCAG+CGG | 0.635450 | 4.3:+46211626 | MS.gene66804:CDS |
| ATGCTCTATTGAATTTGAGG+TGG | 0.636284 | 4.3:+46210085 | MS.gene66804:CDS |
| CACGTTGAATGCCTAGAAAG+TGG | 0.637121 | 4.3:+46204356 | MS.gene66804:CDS |
| CAAAGCGTACCATGTCTTCG+GGG | 0.637892 | 4.3:-46203362 | None:intergenic |
| TTATTTCTACGTAGCTACGA+AGG | 0.641022 | 4.3:+46199513 | MS.gene66804:CDS |
| TGTTGTACAGAACCAAGGAA+AGG | 0.641378 | 4.3:+46211094 | MS.gene66804:intron |
| TGGGAAAGAGAAAGAAGCAA+AGG | 0.643964 | 4.3:+46212214 | MS.gene66804:CDS |
| ATGGAAACAACAAACCTCAA+AGG | 0.644440 | 4.3:-46204426 | None:intergenic |
| GAAACTTGTCCTCCTTCTCG+CGG | 0.645903 | 4.3:-46211837 | None:intergenic |
| CTATGTCCGAAAATGGTGCA+AGG | 0.647302 | 4.3:+46211570 | MS.gene66804:CDS |
| AAGTGAGCGTGCTGTTCCTG+TGG | 0.650914 | 4.3:+46211429 | MS.gene66804:CDS |
| CATAAGCAACATTTCACAGA+GGG | 0.659231 | 4.3:-46204124 | None:intergenic |
| TTGAGGCCTTGGCTCCCCTG+AGG | 0.661065 | 4.3:-46201939 | None:intergenic |
| ATGGGACCGGAGAGATAACA+AGG | 0.661192 | 4.3:+46198029 | MS.gene66804:CDS |
| GGCTCAAGTGTGAAACTGCA+TGG | 0.662491 | 4.3:-46204398 | None:intergenic |
| GAGAGTGAGACGTACATAGG+TGG | 0.664562 | 4.3:+46204332 | MS.gene66804:CDS |
| TGATGAGACTGTTAATGACA+TGG | 0.667501 | 4.3:+46211954 | MS.gene66804:CDS |
| GTCAGCAAGACGTTTAGCAG+TGG | 0.670205 | 4.3:-46211213 | None:intergenic |
| TGAGTCGGAGTTTGTAGACG+GGG | 0.671394 | 4.3:+46206733 | MS.gene66804:CDS |
| GTATTTAATCACAAATAGAG+AGG | 0.674391 | 4.3:+46200743 | MS.gene66804:CDS |
| CATGCAAAACAATCTAAATG+GGG | 0.681650 | 4.3:-46201894 | None:intergenic |
| TCAACATTAAGCATAACACA+AGG | 0.682696 | 4.3:-46209841 | None:intergenic |
| ACATCCAAATGATAAATGAG+GGG | 0.687769 | 4.3:-46205068 | None:intergenic |
| ATGGGGTTACACTTGAGAGG+AGG | 0.689846 | 4.3:+46200589 | MS.gene66804:CDS |
| CACTTTCTAGGCATTCAACG+TGG | 0.691546 | 4.3:-46204355 | None:intergenic |
| ACATGATGCAGAATAACACA+AGG | 0.692232 | 4.3:-46205312 | None:intergenic |
| AGGACTTTGGAAACAAGGGA+AGG | 0.693143 | 4.3:+46211977 | MS.gene66804:CDS |
| GCACTTCCATGCACACACCA+GGG | 0.694671 | 4.3:+46205380 | MS.gene66804:CDS |
| GATAATTCCTGCTTCCAAGG+AGG | 0.696537 | 4.3:+46210218 | MS.gene66804:CDS |
| CATCCAAATGATAAATGAGG+GGG | 0.698663 | 4.3:-46205067 | None:intergenic |
| TCATCCGTAACAATTGATGG+AGG | 0.702175 | 4.3:-46206482 | None:intergenic |
| TCAATGTGACATGAATCAAG+GGG | 0.707482 | 4.3:+46201851 | MS.gene66804:CDS |
| CCTATGAGTCCATATTAACG+GGG | 0.709937 | 4.3:+46200167 | MS.gene66804:CDS |
| CATCAAGAAGATCAAGCCAG+CGG | 0.720275 | 4.3:-46210922 | None:intergenic |
| CAACATTAAGCATAACACAA+GGG | 0.720524 | 4.3:-46209840 | None:intergenic |
| AGGCGTTGTCACATATACCG+GGG | 0.731333 | 4.3:+46207678 | MS.gene66804:CDS |
| GTGATAGTTATCTTCCTCAG+GGG | 0.734705 | 4.3:+46201925 | MS.gene66804:CDS |
| TGTTGGTGTGTCCAACGATG+GGG | 0.734970 | 4.3:+46200572 | MS.gene66804:CDS |
| TGATGCAGAATAACACAAGG+CGG | 0.747304 | 4.3:-46205309 | None:intergenic |
| TATGACTCAGATATACGGTG+TGG | 0.750508 | 4.3:+46200537 | MS.gene66804:intron |
| CCATAAGCAACATTTCACAG+AGG | 0.782883 | 4.3:-46204125 | None:intergenic |
| TGAGACTGTTAATGACATGG+AGG | 0.783008 | 4.3:+46211957 | MS.gene66804:CDS |
| AATCAGGATGAACAACCCTG+GGG | 0.822010 | 4.3:-46211798 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 46198018 | 46212748 | 46198018 | ID=MS.gene66804 |
| chr4.3 | mRNA | 46198018 | 46212748 | 46198018 | ID=MS.gene66804.t1;Parent=MS.gene66804 |
| chr4.3 | exon | 46198018 | 46198167 | 46198018 | ID=MS.gene66804.t1.exon1;Parent=MS.gene66804.t1 |
| chr4.3 | CDS | 46198018 | 46198167 | 46198018 | ID=cds.MS.gene66804.t1;Parent=MS.gene66804.t1 |
| chr4.3 | exon | 46199316 | 46199381 | 46199316 | ID=MS.gene66804.t1.exon2;Parent=MS.gene66804.t1 |
| chr4.3 | CDS | 46199316 | 46199381 | 46199316 | ID=cds.MS.gene66804.t1;Parent=MS.gene66804.t1 |
| chr4.3 | exon | 46199475 | 46199534 | 46199475 | ID=MS.gene66804.t1.exon3;Parent=MS.gene66804.t1 |
| chr4.3 | CDS | 46199475 | 46199534 | 46199475 | ID=cds.MS.gene66804.t1;Parent=MS.gene66804.t1 |
| chr4.3 | exon | 46199713 | 46199808 | 46199713 | ID=MS.gene66804.t1.exon4;Parent=MS.gene66804.t1 |
| chr4.3 | CDS | 46199713 | 46199808 | 46199713 | ID=cds.MS.gene66804.t1;Parent=MS.gene66804.t1 |
| chr4.3 | exon | 46200034 | 46200194 | 46200034 | ID=MS.gene66804.t1.exon5;Parent=MS.gene66804.t1 |
| chr4.3 | CDS | 46200034 | 46200194 | 46200034 | ID=cds.MS.gene66804.t1;Parent=MS.gene66804.t1 |
| chr4.3 | exon | 46200341 | 46200429 | 46200341 | ID=MS.gene66804.t1.exon6;Parent=MS.gene66804.t1 |
| chr4.3 | CDS | 46200341 | 46200429 | 46200341 | ID=cds.MS.gene66804.t1;Parent=MS.gene66804.t1 |
| chr4.3 | exon | 46200547 | 46200764 | 46200547 | ID=MS.gene66804.t1.exon7;Parent=MS.gene66804.t1 |
| chr4.3 | CDS | 46200547 | 46200764 | 46200547 | ID=cds.MS.gene66804.t1;Parent=MS.gene66804.t1 |
| chr4.3 | exon | 46201138 | 46201224 | 46201138 | ID=MS.gene66804.t1.exon8;Parent=MS.gene66804.t1 |
| chr4.3 | CDS | 46201138 | 46201224 | 46201138 | ID=cds.MS.gene66804.t1;Parent=MS.gene66804.t1 |
| chr4.3 | exon | 46201337 | 46201471 | 46201337 | ID=MS.gene66804.t1.exon9;Parent=MS.gene66804.t1 |
| chr4.3 | CDS | 46201337 | 46201471 | 46201337 | ID=cds.MS.gene66804.t1;Parent=MS.gene66804.t1 |
| chr4.3 | exon | 46201840 | 46201962 | 46201840 | ID=MS.gene66804.t1.exon10;Parent=MS.gene66804.t1 |
| chr4.3 | CDS | 46201840 | 46201962 | 46201840 | ID=cds.MS.gene66804.t1;Parent=MS.gene66804.t1 |
| chr4.3 | exon | 46203318 | 46203401 | 46203318 | ID=MS.gene66804.t1.exon11;Parent=MS.gene66804.t1 |
| chr4.3 | CDS | 46203318 | 46203401 | 46203318 | ID=cds.MS.gene66804.t1;Parent=MS.gene66804.t1 |
| chr4.3 | exon | 46203988 | 46204152 | 46203988 | ID=MS.gene66804.t1.exon12;Parent=MS.gene66804.t1 |
| chr4.3 | CDS | 46203988 | 46204152 | 46203988 | ID=cds.MS.gene66804.t1;Parent=MS.gene66804.t1 |
| chr4.3 | exon | 46204257 | 46204433 | 46204257 | ID=MS.gene66804.t1.exon13;Parent=MS.gene66804.t1 |
| chr4.3 | CDS | 46204257 | 46204433 | 46204257 | ID=cds.MS.gene66804.t1;Parent=MS.gene66804.t1 |
| chr4.3 | exon | 46204720 | 46204833 | 46204720 | ID=MS.gene66804.t1.exon14;Parent=MS.gene66804.t1 |
| chr4.3 | CDS | 46204720 | 46204833 | 46204720 | ID=cds.MS.gene66804.t1;Parent=MS.gene66804.t1 |
| chr4.3 | exon | 46205029 | 46205133 | 46205029 | ID=MS.gene66804.t1.exon15;Parent=MS.gene66804.t1 |
| chr4.3 | CDS | 46205029 | 46205133 | 46205029 | ID=cds.MS.gene66804.t1;Parent=MS.gene66804.t1 |
| chr4.3 | exon | 46205238 | 46205423 | 46205238 | ID=MS.gene66804.t1.exon16;Parent=MS.gene66804.t1 |
| chr4.3 | CDS | 46205238 | 46205423 | 46205238 | ID=cds.MS.gene66804.t1;Parent=MS.gene66804.t1 |
| chr4.3 | exon | 46206482 | 46206600 | 46206482 | ID=MS.gene66804.t1.exon17;Parent=MS.gene66804.t1 |
| chr4.3 | CDS | 46206482 | 46206600 | 46206482 | ID=cds.MS.gene66804.t1;Parent=MS.gene66804.t1 |
| chr4.3 | exon | 46206706 | 46206847 | 46206706 | ID=MS.gene66804.t1.exon18;Parent=MS.gene66804.t1 |
| chr4.3 | CDS | 46206706 | 46206847 | 46206706 | ID=cds.MS.gene66804.t1;Parent=MS.gene66804.t1 |
| chr4.3 | exon | 46206918 | 46207012 | 46206918 | ID=MS.gene66804.t1.exon19;Parent=MS.gene66804.t1 |
| chr4.3 | CDS | 46206918 | 46207012 | 46206918 | ID=cds.MS.gene66804.t1;Parent=MS.gene66804.t1 |
| chr4.3 | exon | 46207401 | 46207538 | 46207401 | ID=MS.gene66804.t1.exon20;Parent=MS.gene66804.t1 |
| chr4.3 | CDS | 46207401 | 46207538 | 46207401 | ID=cds.MS.gene66804.t1;Parent=MS.gene66804.t1 |
| chr4.3 | exon | 46207648 | 46207776 | 46207648 | ID=MS.gene66804.t1.exon21;Parent=MS.gene66804.t1 |
| chr4.3 | CDS | 46207648 | 46207776 | 46207648 | ID=cds.MS.gene66804.t1;Parent=MS.gene66804.t1 |
| chr4.3 | exon | 46209768 | 46209897 | 46209768 | ID=MS.gene66804.t1.exon22;Parent=MS.gene66804.t1 |
| chr4.3 | CDS | 46209768 | 46209897 | 46209768 | ID=cds.MS.gene66804.t1;Parent=MS.gene66804.t1 |
| chr4.3 | exon | 46210041 | 46210121 | 46210041 | ID=MS.gene66804.t1.exon23;Parent=MS.gene66804.t1 |
| chr4.3 | CDS | 46210041 | 46210121 | 46210041 | ID=cds.MS.gene66804.t1;Parent=MS.gene66804.t1 |
| chr4.3 | exon | 46210213 | 46210356 | 46210213 | ID=MS.gene66804.t1.exon24;Parent=MS.gene66804.t1 |
| chr4.3 | CDS | 46210213 | 46210356 | 46210213 | ID=cds.MS.gene66804.t1;Parent=MS.gene66804.t1 |
| chr4.3 | exon | 46210848 | 46210943 | 46210848 | ID=MS.gene66804.t1.exon25;Parent=MS.gene66804.t1 |
| chr4.3 | CDS | 46210848 | 46210943 | 46210848 | ID=cds.MS.gene66804.t1;Parent=MS.gene66804.t1 |
| chr4.3 | exon | 46211104 | 46211304 | 46211104 | ID=MS.gene66804.t1.exon26;Parent=MS.gene66804.t1 |
| chr4.3 | CDS | 46211104 | 46211304 | 46211104 | ID=cds.MS.gene66804.t1;Parent=MS.gene66804.t1 |
| chr4.3 | exon | 46211418 | 46211472 | 46211418 | ID=MS.gene66804.t1.exon27;Parent=MS.gene66804.t1 |
| chr4.3 | CDS | 46211418 | 46211472 | 46211418 | ID=cds.MS.gene66804.t1;Parent=MS.gene66804.t1 |
| chr4.3 | exon | 46211557 | 46211699 | 46211557 | ID=MS.gene66804.t1.exon28;Parent=MS.gene66804.t1 |
| chr4.3 | CDS | 46211557 | 46211699 | 46211557 | ID=cds.MS.gene66804.t1;Parent=MS.gene66804.t1 |
| chr4.3 | exon | 46211784 | 46212235 | 46211784 | ID=MS.gene66804.t1.exon29;Parent=MS.gene66804.t1 |
| chr4.3 | CDS | 46211784 | 46212235 | 46211784 | ID=cds.MS.gene66804.t1;Parent=MS.gene66804.t1 |
| chr4.3 | exon | 46212727 | 46212748 | 46212727 | ID=MS.gene66804.t1.exon30;Parent=MS.gene66804.t1 |
| chr4.3 | CDS | 46212727 | 46212748 | 46212727 | ID=cds.MS.gene66804.t1;Parent=MS.gene66804.t1 |
| Gene Sequence |
| Protein sequence |
