Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene66810.t1 | XP_024638247.1 | 85.5 | 365 | 14 | 2 | 2 | 327 | 278 | 642 | 1.30E-167 | 599 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene66810.t1 | O65530 | 38.9 | 298 | 138 | 4 | 6 | 259 | 370 | 667 | 4.4e-50 | 199.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene66810.t1 | G7JMD5 | 85.0 | 367 | 14 | 2 | 2 | 327 | 278 | 644 | 1.7e-167 | 598.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene057768 | MS.gene66810 | 0.83188 | 1.30E-55 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 55 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTAACTCTGTACTTGAATT+TGG | 0.163739 | 4.2:+35261339 | None:intergenic |
TTGTTGCAGTTGTCTGATTT+TGG | 0.183983 | 4.2:-35262194 | MS.gene66810:intron |
GTTATTACCTGATTAAATTT+AGG | 0.189769 | 4.2:+35261637 | None:intergenic |
CAGATACTGAAGATCCTAAA+AGG | 0.238779 | 4.2:-35261432 | MS.gene66810:CDS |
CACTTAACTCTTGCATTACT+TGG | 0.261108 | 4.2:-35261318 | MS.gene66810:CDS |
TTTCCATACATGAAGTATTC+AGG | 0.263993 | 4.2:+35262095 | None:intergenic |
CCAATAATAGAGAGTGGTTT+TGG | 0.270194 | 4.2:-35261698 | MS.gene66810:intron |
TACATCTTCTTGTGTCAAAA+AGG | 0.287552 | 4.2:+35262142 | None:intergenic |
CGCAATACTTTAACTGCAAT+TGG | 0.301742 | 4.2:+35262846 | None:intergenic |
TGTACCAATCAATTCTCTTC+AGG | 0.321508 | 4.2:-35263106 | MS.gene66810:intron |
TTCATTGCAGAAAATTTGAT+TGG | 0.351745 | 4.2:-35262918 | MS.gene66810:intron |
ACTTCGTCCTAAATTTAATC+AGG | 0.372511 | 4.2:-35261644 | MS.gene66810:intron |
TTTCCCTAAAGGAAGCTTAG+AGG | 0.382841 | 4.2:-35262694 | MS.gene66810:CDS |
TTTCCTCTAAGCTTCCTTTA+GGG | 0.385756 | 4.2:+35262691 | None:intergenic |
TCCATCAGGGAGAATTCCTT+TGG | 0.389177 | 4.2:+35262872 | None:intergenic |
GAAGATGTAGTAGGAACATT+TGG | 0.393986 | 4.2:-35262128 | MS.gene66810:CDS |
GACGAGAGAGCTTGGTAGCT+TGG | 0.396181 | 4.2:-35261980 | MS.gene66810:CDS |
GTACTACTTGAACTACTATC+AGG | 0.424843 | 4.2:-35262035 | MS.gene66810:CDS |
TTGACACAAGAAGATGTAGT+AGG | 0.432844 | 4.2:-35262137 | MS.gene66810:CDS |
GTGAGATTTAATGTAGCTGT+TGG | 0.445725 | 4.2:-35262525 | MS.gene66810:CDS |
CTTCTGTGTGTAGGTAATCA+AGG | 0.446565 | 4.2:+35262490 | None:intergenic |
ACGAGAGAGCTTGGTAGCTT+GGG | 0.455773 | 4.2:-35261979 | MS.gene66810:intron |
TACTTGTGGCTCAAGCTCCT+TGG | 0.457589 | 4.2:+35262416 | None:intergenic |
GCAGAAAATTTGATTGGGAA+AGG | 0.464633 | 4.2:-35262912 | MS.gene66810:intron |
TTCAAACATTCTTCTTTCCA+AGG | 0.467525 | 4.2:-35262433 | MS.gene66810:CDS |
TTGCAAGGTTCAGAGCTGAT+TGG | 0.473617 | 4.2:+35262005 | None:intergenic |
TCATTGCAGAAAATTTGATT+GGG | 0.474912 | 4.2:-35262917 | MS.gene66810:intron |
GCTCCTGAATACTTCATGTA+TGG | 0.476094 | 4.2:-35262098 | MS.gene66810:CDS |
GTTTATGAGTATTTCCCTAA+AGG | 0.477708 | 4.2:-35262705 | MS.gene66810:CDS |
AAGATAGATGTCTATGCCTT+TGG | 0.486190 | 4.2:-35262062 | MS.gene66810:CDS |
CAGCATCTTTATGCATCGCA+CGG | 0.490450 | 4.2:-35261675 | MS.gene66810:CDS |
CCGACCTGAAGAGAATTGAT+TGG | 0.490847 | 4.2:+35263102 | None:intergenic |
AAAGTATTGCGATCATCAAA+AGG | 0.500424 | 4.2:-35262834 | MS.gene66810:CDS |
GAAAATTTGATTGGGAAAGG+AGG | 0.507785 | 4.2:-35262909 | MS.gene66810:CDS |
GTGAGAATTTGAAAGATCAA+TGG | 0.511673 | 4.2:-35261248 | MS.gene66810:CDS |
TTGCAAAGGACGAGAGAGCT+TGG | 0.538082 | 4.2:-35261988 | MS.gene66810:CDS |
AGATACTGAAGATCCTAAAA+GGG | 0.539548 | 4.2:-35261431 | MS.gene66810:CDS |
ATTTGAAAGATCAATGGAGC+AGG | 0.542261 | 4.2:-35261242 | MS.gene66810:CDS |
AAGCTCTCTCGTCCTTTGCA+AGG | 0.545203 | 4.2:+35261990 | None:intergenic |
TCCAAAGGAATTCTCCCTGA+TGG | 0.547063 | 4.2:-35262873 | MS.gene66810:CDS |
ACTTGAACTACTATCAGGTA+GGG | 0.558129 | 4.2:-35262030 | MS.gene66810:CDS |
TGATATTATTTCCATCTCAA+AGG | 0.559194 | 4.2:+35262794 | None:intergenic |
TGCGATCATCAAAAGGAGCA+TGG | 0.559245 | 4.2:-35262827 | MS.gene66810:CDS |
GGAGAATTCCTTTGGACACA+CGG | 0.560372 | 4.2:+35262880 | None:intergenic |
AGCATCTTTATGCATCGCAC+GGG | 0.581862 | 4.2:-35261674 | MS.gene66810:CDS |
GGAAGCAACCGTGTGTCCAA+AGG | 0.584769 | 4.2:-35262888 | MS.gene66810:CDS |
TTCTGTGTGTAGGTAATCAA+GGG | 0.590326 | 4.2:+35262491 | None:intergenic |
TAATTTCGCTCAATTGCAAG+TGG | 0.590623 | 4.2:-35263153 | MS.gene66810:CDS |
GCTTCGAAGCTTCTGTGTGT+AGG | 0.594575 | 4.2:+35262481 | None:intergenic |
TACAAGACTTTAGAGACTCA+AGG | 0.598343 | 4.2:+35263125 | None:intergenic |
ATCAGCTCTGAACCTTGCAA+AGG | 0.618686 | 4.2:-35262002 | MS.gene66810:CDS |
TTCAAGTAGTACTACACCAA+AGG | 0.624918 | 4.2:+35262046 | None:intergenic |
TACTTGAACTACTATCAGGT+AGG | 0.626862 | 4.2:-35262031 | MS.gene66810:CDS |
TGTAGCTGTTGGAGTAGCTG+AGG | 0.632490 | 4.2:-35262514 | MS.gene66810:CDS |
AGCTTAGAGGAAAATCTACA+TGG | 0.638566 | 4.2:-35262681 | MS.gene66810:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAGTTTTCAAAATATATAAT+TGG | + | chr4.2:35262910-35262929 | None:intergenic | 10.0% |
!! | TCATATAAATTTCCTTTAAA+CGG | - | chr4.2:35261774-35261793 | MS.gene66810:intron | 15.0% |
!! | TTTAAAGGAAATTTATATGA+TGG | + | chr4.2:35261774-35261793 | None:intergenic | 15.0% |
!! | AAATTTATATGATGGTTGAA+AGG | + | chr4.2:35261766-35261785 | None:intergenic | 20.0% |
!! | AATACTAATAAAACACAGTT+TGG | + | chr4.2:35261432-35261451 | None:intergenic | 20.0% |
!! | AATCATTTCTCTTTACAAAA+TGG | + | chr4.2:35262036-35262055 | None:intergenic | 20.0% |
!! | AGCTTATATGAATCTATAAA+TGG | - | chr4.2:35261803-35261822 | MS.gene66810:intron | 20.0% |
!! | GTTATTACCTGATTAAATTT+AGG | + | chr4.2:35262758-35262777 | None:intergenic | 20.0% |
!! | TCAAAAAATTTGATTACTTG+TGG | + | chr4.2:35261993-35262012 | None:intergenic | 20.0% |
!!! | AATTTGTTCTAATTGAAGTT+AGG | + | chr4.2:35262444-35262463 | None:intergenic | 20.0% |
!!! | TGAAAAATGATTTCATTTTC+AGG | - | chr4.2:35262666-35262685 | MS.gene66810:intron | 20.0% |
!!! | TTGTAAAGAGAAATGATTTT+TGG | - | chr4.2:35262038-35262057 | MS.gene66810:CDS | 20.0% |
! | AAAAACATTACTCAACTACT+TGG | - | chr4.2:35261633-35261652 | MS.gene66810:intron | 25.0% |
! | AAATTGTGATTTCAACTATC+GGG | - | chr4.2:35262583-35262602 | MS.gene66810:intron | 25.0% |
! | AACTAAATCAGATATTGAAC+AGG | - | chr4.2:35262509-35262528 | MS.gene66810:CDS | 25.0% |
! | AGTTGTAAGATGTCTAAATT+TGG | + | chr4.2:35262068-35262087 | None:intergenic | 25.0% |
! | ATGAATCTATAAATGGATGT+AGG | - | chr4.2:35261810-35261829 | MS.gene66810:intron | 25.0% |
! | CAATAATTTAATTGCAGTGA+TGG | - | chr4.2:35262796-35262815 | MS.gene66810:CDS | 25.0% |
! | CATCACTGCAATTAAATTAT+TGG | + | chr4.2:35262798-35262817 | None:intergenic | 25.0% |
! | GAAATTGTGATTTCAACTAT+CGG | - | chr4.2:35262582-35262601 | MS.gene66810:intron | 25.0% |
! | TCATTGCAGAAAATTTGATT+GGG | - | chr4.2:35261475-35261494 | MS.gene66810:intron | 25.0% |
! | TGATATTATTTCCATCTCAA+AGG | + | chr4.2:35261601-35261620 | None:intergenic | 25.0% |
! | TTCATTGCAGAAAATTTGAT+TGG | - | chr4.2:35261474-35261493 | MS.gene66810:intron | 25.0% |
!! | TTCATCTATCTTTTATCAAC+TGG | + | chr4.2:35261380-35261399 | None:intergenic | 25.0% |
AAAGTTGTCGAGACTAAATT+TGG | - | chr4.2:35262093-35262112 | MS.gene66810:CDS | 30.0% | |
ACTTCGTCCTAAATTTAATC+AGG | - | chr4.2:35262748-35262767 | MS.gene66810:CDS | 30.0% | |
AGATACTGAAGATCCTAAAA+GGG | - | chr4.2:35262961-35262980 | MS.gene66810:intron | 30.0% | |
GCTAGTGTATTTAAAAATCG+AGG | + | chr4.2:35261340-35261359 | None:intergenic | 30.0% | |
GTGAGAATTTGAAAGATCAA+TGG | - | chr4.2:35263144-35263163 | MS.gene66810:CDS | 30.0% | |
GTTTATGAGTATTTCCCTAA+AGG | - | chr4.2:35261687-35261706 | MS.gene66810:CDS | 30.0% | |
TAAACAATTGAATCGTGACT+CGG | + | chr4.2:35262543-35262562 | None:intergenic | 30.0% | |
TACATCTTCTTGTGTCAAAA+AGG | + | chr4.2:35262253-35262272 | None:intergenic | 30.0% | |
TGTAACTCTGTACTTGAATT+TGG | + | chr4.2:35263056-35263075 | None:intergenic | 30.0% | |
TTCAAACATTCTTCTTTCCA+AGG | - | chr4.2:35261959-35261978 | MS.gene66810:intron | 30.0% | |
! | TGATTTTGGACTTGCAATAT+GGG | - | chr4.2:35262212-35262231 | MS.gene66810:intron | 30.0% |
! | TTTCCATACATGAAGTATTC+AGG | + | chr4.2:35262300-35262319 | None:intergenic | 30.0% |
!! | AAAGTATTGCGATCATCAAA+AGG | - | chr4.2:35261558-35261577 | MS.gene66810:intron | 30.0% |
AAGATAGATGTCTATGCCTT+TGG | - | chr4.2:35262330-35262349 | MS.gene66810:intron | 35.0% | |
AATGGATGTAGGAAAGAACA+AGG | - | chr4.2:35261821-35261840 | MS.gene66810:intron | 35.0% | |
ACTTGAACTACTATCAGGTA+GGG | - | chr4.2:35262362-35262381 | MS.gene66810:intron | 35.0% | |
AGCTTAGAGGAAAATCTACA+TGG | - | chr4.2:35261711-35261730 | MS.gene66810:intron | 35.0% | |
ATCAGACAACTGCAACAAAA+AGG | + | chr4.2:35262196-35262215 | None:intergenic | 35.0% | |
ATTTGAAAGATCAATGGAGC+AGG | - | chr4.2:35263150-35263169 | MS.gene66810:CDS | 35.0% | |
CACTTAACTCTTGCATTACT+TGG | - | chr4.2:35263074-35263093 | MS.gene66810:intron | 35.0% | |
CAGATACTGAAGATCCTAAA+AGG | - | chr4.2:35262960-35262979 | MS.gene66810:intron | 35.0% | |
CCAAAACCACTCTCTATTAT+TGG | + | chr4.2:35262697-35262716 | None:intergenic | 35.0% | |
CGCAATACTTTAACTGCAAT+TGG | + | chr4.2:35261549-35261568 | None:intergenic | 35.0% | |
GAAAATTTGATTGGGAAAGG+AGG | - | chr4.2:35261483-35261502 | MS.gene66810:intron | 35.0% | |
GAAGATGTAGTAGGAACATT+TGG | - | chr4.2:35262264-35262283 | MS.gene66810:intron | 35.0% | |
GATCTTCAGTATCTGTACAT+AGG | + | chr4.2:35262955-35262974 | None:intergenic | 35.0% | |
GCAAAACCAATAATAGAGAG+TGG | - | chr4.2:35262688-35262707 | MS.gene66810:CDS | 35.0% | |
GCAGAAAATTTGATTGGGAA+AGG | - | chr4.2:35261480-35261499 | MS.gene66810:intron | 35.0% | |
GTACTACTTGAACTACTATC+AGG | - | chr4.2:35262357-35262376 | MS.gene66810:intron | 35.0% | |
GTCAAAAAGGATGTTGTTGT+TGG | + | chr4.2:35262240-35262259 | None:intergenic | 35.0% | |
GTGAGATTTAATGTAGCTGT+TGG | - | chr4.2:35261867-35261886 | MS.gene66810:intron | 35.0% | |
TAAGCTTTGCTTCCGTTTAA+AGG | + | chr4.2:35261789-35261808 | None:intergenic | 35.0% | |
TAATTTCGCTCAATTGCAAG+TGG | - | chr4.2:35261239-35261258 | MS.gene66810:CDS | 35.0% | |
TACTTGAACTACTATCAGGT+AGG | - | chr4.2:35262361-35262380 | MS.gene66810:intron | 35.0% | |
TGTACCAATCAATTCTCTTC+AGG | - | chr4.2:35261286-35261305 | MS.gene66810:CDS | 35.0% | |
TTCAAGTAGTACTACACCAA+AGG | + | chr4.2:35262349-35262368 | None:intergenic | 35.0% | |
TTCTGTGTGTAGGTAATCAA+GGG | + | chr4.2:35261904-35261923 | None:intergenic | 35.0% | |
TTGACACAAGAAGATGTAGT+AGG | - | chr4.2:35262255-35262274 | MS.gene66810:intron | 35.0% | |
TTTCCTCTAAGCTTCCTTTA+GGG | + | chr4.2:35261704-35261723 | None:intergenic | 35.0% | |
! | CCAATAATAGAGAGTGGTTT+TGG | - | chr4.2:35262694-35262713 | MS.gene66810:CDS | 35.0% |
! | CTGATTTTGGACTTGCAATA+TGG | - | chr4.2:35262211-35262230 | MS.gene66810:intron | 35.0% |
! | GATTTTGGACTTGCAATATG+GGG | - | chr4.2:35262213-35262232 | MS.gene66810:intron | 35.0% |
! | TACAAGACTTTAGAGACTCA+AGG | + | chr4.2:35261270-35261289 | None:intergenic | 35.0% |
! | TTGTTGCAGTTGTCTGATTT+TGG | - | chr4.2:35262198-35262217 | MS.gene66810:intron | 35.0% |
! | TTTTCCTCTAAGCTTCCTTT+AGG | + | chr4.2:35261705-35261724 | None:intergenic | 35.0% |
!! | GAAAGATTTTGCCTTTGAGA+TGG | - | chr4.2:35261587-35261606 | MS.gene66810:intron | 35.0% |
CCAATCAATTCTCTTCAGGT+CGG | - | chr4.2:35261290-35261309 | MS.gene66810:CDS | 40.0% | |
CTTCTGTGTGTAGGTAATCA+AGG | + | chr4.2:35261905-35261924 | None:intergenic | 40.0% | |
GATGTAGGAAAGAACAAGGA+TGG | - | chr4.2:35261825-35261844 | MS.gene66810:intron | 40.0% | |
GCTCCTGAATACTTCATGTA+TGG | - | chr4.2:35262294-35262313 | MS.gene66810:intron | 40.0% | |
TTTCCCTAAAGGAAGCTTAG+AGG | - | chr4.2:35261698-35261717 | MS.gene66810:intron | 40.0% | |
! | CATCGTCATTGTTCCCTTTT+AGG | + | chr4.2:35262977-35262996 | None:intergenic | 40.0% |
!!! | ACTGCAATTGGTTTTCCATC+AGG | + | chr4.2:35261537-35261556 | None:intergenic | 40.0% |
!!! | CTGCAATTGGTTTTCCATCA+GGG | + | chr4.2:35261536-35261555 | None:intergenic | 40.0% |
AGCATCTTTATGCATCGCAC+GGG | - | chr4.2:35262718-35262737 | MS.gene66810:CDS | 45.0% | |
CAGCATCTTTATGCATCGCA+CGG | - | chr4.2:35262717-35262736 | MS.gene66810:CDS | 45.0% | |
CCGACCTGAAGAGAATTGAT+TGG | + | chr4.2:35261293-35261312 | None:intergenic | 45.0% | |
GGAGAATTCCTTTGGACACA+CGG | + | chr4.2:35261515-35261534 | None:intergenic | 45.0% | |
TCCAAAGGAATTCTCCCTGA+TGG | - | chr4.2:35261519-35261538 | MS.gene66810:intron | 45.0% | |
TCCATCAGGGAGAATTCCTT+TGG | + | chr4.2:35261523-35261542 | None:intergenic | 45.0% | |
TGCGATCATCAAAAGGAGCA+TGG | - | chr4.2:35261565-35261584 | MS.gene66810:intron | 45.0% | |
TTGCAAGGTTCAGAGCTGAT+TGG | + | chr4.2:35262390-35262409 | None:intergenic | 45.0% | |
!! | ATCAGCTCTGAACCTTGCAA+AGG | - | chr4.2:35262390-35262409 | MS.gene66810:intron | 45.0% |
AAGCTCTCTCGTCCTTTGCA+AGG | + | chr4.2:35262405-35262424 | None:intergenic | 50.0% | |
GCTTCGAAGCTTCTGTGTGT+AGG | + | chr4.2:35261914-35261933 | None:intergenic | 50.0% | |
TACTTGTGGCTCAAGCTCCT+TGG | + | chr4.2:35261979-35261998 | None:intergenic | 50.0% | |
TGTAGCTGTTGGAGTAGCTG+AGG | - | chr4.2:35261878-35261897 | MS.gene66810:intron | 50.0% | |
TTGCAAAGGACGAGAGAGCT+TGG | - | chr4.2:35262404-35262423 | MS.gene66810:intron | 50.0% | |
! | ACGAGAGAGCTTGGTAGCTT+GGG | - | chr4.2:35262413-35262432 | MS.gene66810:intron | 50.0% |
GGAAGCAACCGTGTGTCCAA+AGG | - | chr4.2:35261504-35261523 | MS.gene66810:intron | 55.0% | |
! | GACGAGAGAGCTTGGTAGCT+TGG | - | chr4.2:35262412-35262431 | MS.gene66810:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 35261224 | 35263190 | 35261224 | ID=MS.gene66810 |
chr4.2 | mRNA | 35261224 | 35263190 | 35261224 | ID=MS.gene66810.t1;Parent=MS.gene66810 |
chr4.2 | exon | 35263107 | 35263190 | 35263107 | ID=MS.gene66810.t1.exon1;Parent=MS.gene66810.t1 |
chr4.2 | CDS | 35263107 | 35263190 | 35263107 | ID=cds.MS.gene66810.t1;Parent=MS.gene66810.t1 |
chr4.2 | exon | 35262682 | 35262930 | 35262682 | ID=MS.gene66810.t1.exon2;Parent=MS.gene66810.t1 |
chr4.2 | CDS | 35262682 | 35262930 | 35262682 | ID=cds.MS.gene66810.t1;Parent=MS.gene66810.t1 |
chr4.2 | exon | 35262419 | 35262549 | 35262419 | ID=MS.gene66810.t1.exon3;Parent=MS.gene66810.t1 |
chr4.2 | CDS | 35262419 | 35262549 | 35262419 | ID=cds.MS.gene66810.t1;Parent=MS.gene66810.t1 |
chr4.2 | exon | 35261980 | 35262207 | 35261980 | ID=MS.gene66810.t1.exon4;Parent=MS.gene66810.t1 |
chr4.2 | CDS | 35261980 | 35262207 | 35261980 | ID=cds.MS.gene66810.t1;Parent=MS.gene66810.t1 |
chr4.2 | exon | 35261645 | 35261710 | 35261645 | ID=MS.gene66810.t1.exon5;Parent=MS.gene66810.t1 |
chr4.2 | CDS | 35261645 | 35261710 | 35261645 | ID=cds.MS.gene66810.t1;Parent=MS.gene66810.t1 |
chr4.2 | exon | 35261224 | 35261451 | 35261224 | ID=MS.gene66810.t1.exon6;Parent=MS.gene66810.t1 |
chr4.2 | CDS | 35261224 | 35261451 | 35261224 | ID=cds.MS.gene66810.t1;Parent=MS.gene66810.t1 |
Gene Sequence |
Protein sequence |