Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66865.t1 | XP_003622734.2 | 65.4 | 269 | 5 | 3 | 1 | 194 | 265 | 520 | 3.40E-86 | 327.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66865.t1 | Q9SU40 | 47.6 | 271 | 52 | 4 | 1 | 194 | 261 | 518 | 3.7e-57 | 222.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66865.t1 | G7KX02 | 65.4 | 269 | 5 | 3 | 1 | 194 | 265 | 520 | 2.5e-86 | 327.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051249 | MS.gene66865 | 0.807465 | 4.99E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66865.t1 | MTR_7g051440 | 62.825 | 269 | 12 | 5 | 1 | 194 | 265 | 520 | 3.84e-96 | 291 |
| MS.gene66865.t1 | MTR_4g101650 | 44.574 | 258 | 79 | 8 | 1 | 194 | 263 | 520 | 6.66e-54 | 181 |
| MS.gene66865.t1 | MTR_3g008580 | 41.085 | 258 | 88 | 8 | 1 | 194 | 265 | 522 | 3.90e-47 | 162 |
| MS.gene66865.t1 | MTR_4g075690 | 36.800 | 250 | 91 | 11 | 1 | 188 | 253 | 497 | 2.39e-27 | 108 |
| MS.gene66865.t1 | MTR_5g018270 | 34.263 | 251 | 92 | 8 | 1 | 187 | 253 | 494 | 5.16e-27 | 107 |
| MS.gene66865.t1 | MTR_3g115050 | 34.921 | 252 | 93 | 9 | 1 | 188 | 254 | 498 | 1.18e-26 | 106 |
| MS.gene66865.t1 | MTR_8g479390 | 48.227 | 141 | 46 | 6 | 1 | 137 | 253 | 370 | 2.07e-26 | 105 |
| MS.gene66865.t1 | MTR_1g090707 | 47.107 | 121 | 46 | 4 | 1 | 120 | 254 | 357 | 4.41e-25 | 102 |
| MS.gene66865.t1 | MTR_1g090707 | 60.377 | 53 | 21 | 0 | 142 | 194 | 455 | 507 | 2.64e-15 | 73.6 |
| MS.gene66865.t1 | MTR_2g088080 | 34.127 | 252 | 97 | 10 | 1 | 189 | 173 | 418 | 3.40e-23 | 95.9 |
| MS.gene66865.t1 | MTR_2g088080 | 34.127 | 252 | 97 | 10 | 1 | 189 | 254 | 499 | 5.55e-23 | 95.9 |
| MS.gene66865.t1 | MTR_4g132320 | 31.250 | 256 | 109 | 9 | 1 | 194 | 255 | 505 | 7.02e-23 | 95.5 |
| MS.gene66865.t1 | MTR_8g479380 | 32.800 | 250 | 99 | 9 | 1 | 187 | 252 | 495 | 1.18e-21 | 92.0 |
| MS.gene66865.t1 | MTR_4g049390 | 31.349 | 252 | 104 | 10 | 1 | 189 | 251 | 496 | 4.69e-21 | 90.1 |
| MS.gene66865.t1 | MTR_4g075690 | 41.844 | 141 | 63 | 5 | 1 | 141 | 253 | 374 | 7.69e-21 | 89.4 |
| MS.gene66865.t1 | MTR_4g083190 | 41.135 | 141 | 57 | 6 | 1 | 138 | 256 | 373 | 1.12e-20 | 89.4 |
| MS.gene66865.t1 | MTR_4g083190 | 57.447 | 47 | 20 | 0 | 142 | 188 | 456 | 502 | 1.47e-12 | 65.9 |
| MS.gene66865.t1 | MTR_1g026410 | 32.157 | 255 | 96 | 9 | 1 | 188 | 253 | 497 | 2.84e-20 | 88.2 |
| MS.gene66865.t1 | MTR_4g083210 | 38.974 | 195 | 77 | 11 | 1 | 188 | 250 | 409 | 4.11e-20 | 87.4 |
| MS.gene66865.t1 | MTR_4g048350 | 29.644 | 253 | 107 | 8 | 1 | 189 | 250 | 495 | 1.35e-19 | 86.3 |
| MS.gene66865.t1 | MTR_3g083430 | 39.716 | 141 | 59 | 6 | 1 | 138 | 254 | 371 | 4.80e-19 | 84.3 |
| MS.gene66865.t1 | MTR_3g083450 | 39.716 | 141 | 59 | 6 | 1 | 138 | 255 | 372 | 1.15e-18 | 83.6 |
| MS.gene66865.t1 | MTR_3g083440 | 39.007 | 141 | 60 | 6 | 1 | 138 | 254 | 371 | 1.92e-18 | 82.8 |
| MS.gene66865.t1 | MTR_3g083390 | 39.007 | 141 | 60 | 6 | 1 | 138 | 254 | 371 | 2.55e-18 | 82.4 |
| MS.gene66865.t1 | MTR_3g083410 | 28.626 | 262 | 110 | 11 | 1 | 194 | 218 | 470 | 2.59e-18 | 82.4 |
| MS.gene66865.t1 | MTR_3g083400 | 28.626 | 262 | 110 | 11 | 1 | 194 | 254 | 506 | 4.59e-18 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66865.t1 | AT4G12420 | 44.280 | 271 | 61 | 7 | 1 | 194 | 261 | 518 | 2.58e-58 | 192 |
| MS.gene66865.t1 | AT4G12420 | 44.280 | 271 | 61 | 7 | 1 | 194 | 261 | 518 | 2.58e-58 | 192 |
| MS.gene66865.t1 | AT5G48450 | 44.531 | 256 | 78 | 8 | 1 | 194 | 259 | 512 | 8.03e-51 | 172 |
| MS.gene66865.t1 | AT5G48450 | 44.531 | 256 | 78 | 8 | 1 | 194 | 259 | 512 | 1.00e-50 | 172 |
| MS.gene66865.t1 | AT4G25240 | 37.597 | 258 | 97 | 8 | 1 | 194 | 264 | 521 | 1.86e-44 | 155 |
| MS.gene66865.t1 | AT4G25240 | 37.597 | 258 | 97 | 8 | 1 | 194 | 264 | 521 | 1.86e-44 | 155 |
| MS.gene66865.t1 | AT5G51480 | 56.643 | 143 | 47 | 3 | 1 | 141 | 263 | 392 | 5.92e-43 | 151 |
| MS.gene66865.t1 | AT5G51480 | 61.404 | 57 | 22 | 0 | 138 | 194 | 465 | 521 | 2.51e-20 | 88.2 |
| MS.gene66865.t1 | AT1G21850 | 32.400 | 250 | 101 | 9 | 1 | 188 | 252 | 495 | 1.04e-26 | 106 |
| MS.gene66865.t1 | AT1G76160 | 31.600 | 250 | 104 | 8 | 1 | 188 | 251 | 495 | 3.64e-25 | 102 |
| MS.gene66865.t1 | AT5G66920 | 44.928 | 138 | 57 | 5 | 1 | 138 | 259 | 377 | 4.40e-24 | 99.0 |
| MS.gene66865.t1 | AT1G41830 | 31.746 | 252 | 101 | 10 | 1 | 188 | 252 | 496 | 2.01e-22 | 94.4 |
| MS.gene66865.t1 | AT3G13390 | 29.603 | 277 | 89 | 10 | 1 | 194 | 257 | 510 | 2.00e-21 | 91.3 |
| MS.gene66865.t1 | AT1G21860 | 41.463 | 164 | 69 | 8 | 1 | 160 | 252 | 392 | 3.64e-21 | 90.5 |
| MS.gene66865.t1 | AT1G21860 | 52.083 | 48 | 23 | 0 | 141 | 188 | 448 | 495 | 8.94e-12 | 63.5 |
| MS.gene66865.t1 | AT1G55570 | 29.242 | 277 | 90 | 11 | 1 | 194 | 258 | 511 | 6.45e-21 | 90.1 |
| MS.gene66865.t1 | AT1G55560 | 30.153 | 262 | 106 | 10 | 1 | 194 | 255 | 507 | 1.31e-20 | 89.0 |
| MS.gene66865.t1 | AT4G22010 | 41.844 | 141 | 63 | 5 | 1 | 141 | 250 | 371 | 1.54e-18 | 83.2 |
| MS.gene66865.t1 | AT4G22010 | 58.333 | 48 | 20 | 0 | 142 | 189 | 449 | 496 | 2.46e-12 | 65.1 |
| MS.gene66865.t1 | AT1G75790 | 29.924 | 264 | 107 | 11 | 1 | 194 | 251 | 506 | 3.23e-18 | 82.0 |
| MS.gene66865.t1 | AT3G13400 | 28.794 | 257 | 106 | 10 | 1 | 189 | 256 | 503 | 1.51e-17 | 80.1 |
| MS.gene66865.t1 | AT3G13400 | 28.794 | 257 | 106 | 10 | 1 | 189 | 256 | 503 | 1.51e-17 | 80.1 |
| MS.gene66865.t1 | AT4G37160 | 40.876 | 137 | 62 | 6 | 1 | 137 | 255 | 372 | 2.06e-17 | 79.7 |
| MS.gene66865.t1 | AT4G37160 | 40.876 | 137 | 62 | 6 | 1 | 137 | 255 | 372 | 2.24e-17 | 79.7 |
| MS.gene66865.t1 | AT2G23630 | 41.606 | 137 | 61 | 6 | 1 | 137 | 258 | 375 | 9.10e-17 | 77.8 |
| MS.gene66865.t1 | AT2G23630 | 41.606 | 137 | 61 | 6 | 1 | 137 | 253 | 370 | 1.13e-16 | 77.8 |
| MS.gene66865.t1 | AT4G28090 | 38.356 | 146 | 61 | 7 | 1 | 141 | 254 | 375 | 2.02e-15 | 73.9 |
| MS.gene66865.t1 | AT4G28090 | 53.191 | 47 | 22 | 0 | 142 | 188 | 453 | 499 | 7.94e-12 | 63.5 |
| MS.gene66865.t1 | AT4G38420 | 37.500 | 144 | 69 | 5 | 1 | 141 | 255 | 380 | 2.51e-12 | 65.1 |
| MS.gene66865.t1 | AT4G38420 | 37.500 | 144 | 69 | 5 | 1 | 141 | 255 | 380 | 3.38e-12 | 64.7 |
| MS.gene66865.t1 | AT4G38420 | 55.319 | 47 | 21 | 0 | 142 | 188 | 458 | 504 | 6.03e-12 | 63.9 |
| MS.gene66865.t1 | AT4G38420 | 37.500 | 144 | 69 | 5 | 1 | 141 | 255 | 380 | 3.45e-12 | 64.7 |
Find 54 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTCTCTTTAGGTCTTTCC+TGG | 0.176907 | 7.3:+55998880 | MS.gene66865:intron |
| CCGCAAGGTTCCTTCAAATA+TGG | 0.204674 | 7.3:+55997488 | MS.gene66865:CDS |
| TTGAAGGAACCTTGCGGGTT+TGG | 0.295134 | 7.3:-55997482 | None:intergenic |
| TTTAGGTCTTTCCTGGGGCT+TGG | 0.295657 | 7.3:+55998887 | MS.gene66865:intron |
| TTCAAACCCTCATCTGAAAA+TGG | 0.306291 | 7.3:+55997421 | MS.gene66865:CDS |
| AAGTGGCGAACTACCCTTAA+TGG | 0.317844 | 7.3:+55997572 | MS.gene66865:CDS |
| GTAAATACGATATACCATTA+AGG | 0.323807 | 7.3:-55997586 | None:intergenic |
| GAACCTCAACTCCTGGTATT+AGG | 0.329715 | 7.3:+55998963 | MS.gene66865:CDS |
| AATTCTCAGGGTCCTGCTTC+AGG | 0.329832 | 7.3:+55997117 | MS.gene66865:CDS |
| CACTTTCCGTTTATAAGCTC+TGG | 0.359937 | 7.3:-55997554 | None:intergenic |
| TTTGCACTACGCTAATTCTC+AGG | 0.376438 | 7.3:+55997104 | MS.gene66865:CDS |
| CTCTTGACAATGCTGGCATT+TGG | 0.381859 | 7.3:+55998926 | MS.gene66865:CDS |
| CATATTTGAAGGAACCTTGC+GGG | 0.394706 | 7.3:-55997487 | None:intergenic |
| CGCAAGGTTCCTTCAAATAT+GGG | 0.395338 | 7.3:+55997489 | MS.gene66865:CDS |
| CTCGGTTTGTTAATTCATCA+TGG | 0.407907 | 7.3:+55997058 | MS.gene66865:CDS |
| TGTCTCTTTAGGTCTTTCCT+GGG | 0.417536 | 7.3:+55998881 | MS.gene66865:intron |
| TGAAAATGGTATTCTATAGT+TGG | 0.421170 | 7.3:+55997435 | MS.gene66865:CDS |
| AGAATTAGCGTAGTGCAAAA+TGG | 0.421537 | 7.3:-55997100 | None:intergenic |
| GCAGAAGTACTTACAATAAG+TGG | 0.423526 | 7.3:+55997952 | MS.gene66865:CDS |
| ATTGTCAAGAGATACTAAAA+TGG | 0.438940 | 7.3:-55998914 | None:intergenic |
| TTAGTATCTCTTGACAATGC+TGG | 0.464781 | 7.3:+55998919 | MS.gene66865:CDS |
| TAAATACGATATACCATTAA+GGG | 0.469026 | 7.3:-55997585 | None:intergenic |
| TCATCATGGACTAGAGCTAC+TGG | 0.469718 | 7.3:+55997072 | MS.gene66865:CDS |
| CGGGTTTGGACGTGCAGCAC+CGG | 0.485660 | 7.3:-55997468 | None:intergenic |
| AGACCTCCAGAGCTTATAAA+CGG | 0.490187 | 7.3:+55997548 | MS.gene66865:CDS |
| ATACCAGGAGTTGAGGTTCT+CGG | 0.491022 | 7.3:-55998959 | None:intergenic |
| GCTTGATTTATAGAGAAAGA+AGG | 0.497123 | 7.3:-55997171 | None:intergenic |
| ACTACATTGTTGCCAGTCCT+CGG | 0.498976 | 7.3:+55997040 | MS.gene66865:CDS |
| AGTAATGTCCCCATATTTGA+AGG | 0.510105 | 7.3:-55997498 | None:intergenic |
| TGAATTAACAAACCGAGGAC+TGG | 0.523363 | 7.3:-55997052 | None:intergenic |
| AAGGATTATCTTGATCAGAA+AGG | 0.538276 | 7.3:-55997152 | None:intergenic |
| AAGATTCTTGGCCTAATACC+AGG | 0.542634 | 7.3:-55998974 | None:intergenic |
| CTAGGAAGAGGACCTGAAGC+AGG | 0.544422 | 7.3:-55997129 | None:intergenic |
| TGGCCTAATACCAGGAGTTG+AGG | 0.544985 | 7.3:-55998966 | None:intergenic |
| GTGCCGAGAACCTCAACTCC+TGG | 0.548498 | 7.3:+55998956 | MS.gene66865:CDS |
| AAAATGGCTGTCCAAGCCCC+AGG | 0.567280 | 7.3:-55998898 | None:intergenic |
| CAGAGCTTATAAACGGAAAG+TGG | 0.569942 | 7.3:+55997555 | MS.gene66865:CDS |
| TTGCACTACGCTAATTCTCA+GGG | 0.573914 | 7.3:+55997105 | MS.gene66865:CDS |
| ATATTCATTCTTAGTTACGA+TGG | 0.577316 | 7.3:+55996996 | MS.gene66865:CDS |
| GTCTCTTTAGGTCTTTCCTG+GGG | 0.581453 | 7.3:+55998882 | MS.gene66865:intron |
| TGATCAGAAAGGCTAGGAAG+AGG | 0.584268 | 7.3:-55997141 | None:intergenic |
| TTTCCGTTTATAAGCTCTGG+AGG | 0.593886 | 7.3:-55997551 | None:intergenic |
| TTATCTTGATCAGAAAGGCT+AGG | 0.602716 | 7.3:-55997147 | None:intergenic |
| CAGAAGTACTTACAATAAGT+GGG | 0.604253 | 7.3:+55997953 | MS.gene66865:CDS |
| TGTGGCTCGCTGCACGACAC+AGG | 0.611173 | 7.3:+55997980 | MS.gene66865:CDS |
| ACAAACATGGACATTCATGT+TGG | 0.617151 | 7.3:+55996967 | None:intergenic |
| CCATATTTGAAGGAACCTTG+CGG | 0.637958 | 7.3:-55997488 | None:intergenic |
| TTACAATAAGTGGGACGGTG+TGG | 0.639857 | 7.3:+55997962 | MS.gene66865:CDS |
| GCTGCACGTCCAAACCCGCA+AGG | 0.640936 | 7.3:+55997473 | MS.gene66865:CDS |
| TATAGTTGGAATGTGTCTGC+CGG | 0.642960 | 7.3:+55997449 | MS.gene66865:CDS |
| CATGATGAATTAACAAACCG+AGG | 0.657882 | 7.3:-55997057 | None:intergenic |
| GCAAGGTTCCTTCAAATATG+GGG | 0.659359 | 7.3:+55997490 | MS.gene66865:CDS |
| AGTTGAGGTTCTCGGCACGA+AGG | 0.671541 | 7.3:-55998951 | None:intergenic |
| AGTACTTACAATAAGTGGGA+CGG | 0.675300 | 7.3:+55997957 | MS.gene66865:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTAGTTTTTAAATATAAA+GGG | + | chr7.3:55998772-55998791 | MS.gene66865:intron | 10.0% |
| !!! | TTGTTAGTTTTTAAATATAA+AGG | + | chr7.3:55998771-55998790 | MS.gene66865:intron | 10.0% |
| !! | ATATATGAAAAAAAACATGT+TGG | - | chr7.3:55997849-55997868 | None:intergenic | 15.0% |
| !! | ATTTCCAAATATAAAAAGAA+AGG | + | chr7.3:55998424-55998443 | MS.gene66865:intron | 15.0% |
| !! | CACATATATTAAAAAAAGTT+AGG | + | chr7.3:55998058-55998077 | MS.gene66865:intron | 15.0% |
| !! | TTTCCAAATATAAAAAGAAA+GGG | + | chr7.3:55998425-55998444 | MS.gene66865:intron | 15.0% |
| !! | TTTGAAAGAAGAAAAAAAAA+AGG | - | chr7.3:55998350-55998369 | None:intergenic | 15.0% |
| !!! | ATCATATTAAATGTCATTTA+AGG | - | chr7.3:55997315-55997334 | None:intergenic | 15.0% |
| !!! | TTTCTTTTTATATTTGGAAA+TGG | - | chr7.3:55998425-55998444 | None:intergenic | 15.0% |
| !! | CAAATTAGAAAAAGTAACAA+TGG | - | chr7.3:55998707-55998726 | None:intergenic | 20.0% |
| !! | TAAATACGATATACCATTAA+GGG | - | chr7.3:55997588-55997607 | None:intergenic | 20.0% |
| !! | TTCCAAATATAAAAAGAAAG+GGG | + | chr7.3:55998426-55998445 | MS.gene66865:intron | 20.0% |
| !!! | TAGTCATTCTGAAATAAAAA+AGG | - | chr7.3:55997231-55997250 | None:intergenic | 20.0% |
| ! | AAAGTTAAAGAATGATCAGA+CGG | - | chr7.3:55997356-55997375 | None:intergenic | 25.0% |
| ! | AATATATGTGAAACTGTCAA+AGG | - | chr7.3:55998048-55998067 | None:intergenic | 25.0% |
| ! | AGAAGTAAGTTGTAATGAAA+TGG | - | chr7.3:55998855-55998874 | None:intergenic | 25.0% |
| ! | ATATATGCAACTCTGAATTT+AGG | + | chr7.3:55997863-55997882 | MS.gene66865:intron | 25.0% |
| ! | ATATTCATTCTTAGTTACGA+TGG | + | chr7.3:55996996-55997015 | MS.gene66865:CDS | 25.0% |
| ! | ATTGTCAAGAGATACTAAAA+TGG | - | chr7.3:55998917-55998936 | None:intergenic | 25.0% |
| ! | GTAAATACGATATACCATTA+AGG | - | chr7.3:55997589-55997608 | None:intergenic | 25.0% |
| ! | TATATGCAACTCTGAATTTA+GGG | + | chr7.3:55997864-55997883 | MS.gene66865:intron | 25.0% |
| ! | TCCAAATATAAAAAGAAAGG+GGG | + | chr7.3:55998427-55998446 | MS.gene66865:intron | 25.0% |
| ! | TGAAAATGGTATTCTATAGT+TGG | + | chr7.3:55997435-55997454 | MS.gene66865:CDS | 25.0% |
| !! | AAAGTTAGGAGTGTAATTAA+TGG | + | chr7.3:55998072-55998091 | MS.gene66865:intron | 25.0% |
| !! | CAAAGAAAACCTTAAGTTTT+AGG | - | chr7.3:55998527-55998546 | None:intergenic | 25.0% |
| AAGGATTATCTTGATCAGAA+AGG | - | chr7.3:55997155-55997174 | None:intergenic | 30.0% | |
| CGCAACATTATAAAATTCTC+GGG | + | chr7.3:55997633-55997652 | MS.gene66865:intron | 30.0% | |
| GCAACATTATAAAATTCTCG+GGG | + | chr7.3:55997634-55997653 | MS.gene66865:intron | 30.0% | |
| GCGATTATAAATAGGTACAA+AGG | - | chr7.3:55998026-55998045 | None:intergenic | 30.0% | |
| GCGCAACATTATAAAATTCT+CGG | + | chr7.3:55997632-55997651 | MS.gene66865:intron | 30.0% | |
| GCTTGATTTATAGAGAAAGA+AGG | - | chr7.3:55997174-55997193 | None:intergenic | 30.0% | |
| TAAATACCGAGCTTCAAATT+TGG | + | chr7.3:55998204-55998223 | MS.gene66865:intron | 30.0% | |
| TAAATCAAGCAAGATCAGTA+AGG | + | chr7.3:55997184-55997203 | MS.gene66865:intron | 30.0% | |
| TGCTGTTATTGCAAGTAAAT+TGG | + | chr7.3:55998797-55998816 | MS.gene66865:intron | 30.0% | |
| TGTCAAAGGCGATTATAAAT+AGG | - | chr7.3:55998034-55998053 | None:intergenic | 30.0% | |
| TTATCAAATAGCAGCTGTAA+TGG | + | chr7.3:55998570-55998589 | MS.gene66865:intron | 30.0% | |
| TTTGAACGATCATGATTCTA+TGG | - | chr7.3:55997407-55997426 | None:intergenic | 30.0% | |
| ! | AAGCTTGATTTTCCAAATAG+AGG | + | chr7.3:55997662-55997681 | MS.gene66865:intron | 30.0% |
| ! | ACCCCCTTTCTTTTTATATT+TGG | - | chr7.3:55998431-55998450 | None:intergenic | 30.0% |
| ! | AGAATACCATTTTCAGATGA+GGG | - | chr7.3:55997430-55997449 | None:intergenic | 30.0% |
| ! | AGCTTGATTTTCCAAATAGA+GGG | + | chr7.3:55997663-55997682 | MS.gene66865:intron | 30.0% |
| ! | TAGAATACCATTTTCAGATG+AGG | - | chr7.3:55997431-55997450 | None:intergenic | 30.0% |
| ! | TGAATTGTAGCATGGATTTT+TGG | + | chr7.3:55997912-55997931 | MS.gene66865:intron | 30.0% |
| ! | TGATTAATAAGGGGTATGTT+TGG | + | chr7.3:55998275-55998294 | MS.gene66865:intron | 30.0% |
| !! | AGAATAGAGTTGTTGTTTCA+TGG | + | chr7.3:55998466-55998485 | MS.gene66865:intron | 30.0% |
| !! | AGGAGTGTAATTAATGGATT+TGG | + | chr7.3:55998078-55998097 | MS.gene66865:intron | 30.0% |
| !! | CAGAAGTACTTACAATAAGT+GGG | + | chr7.3:55997953-55997972 | MS.gene66865:CDS | 30.0% |
| !! | GATATGCATTCTTTGTTGTT+GGG | + | chr7.3:55997797-55997816 | MS.gene66865:intron | 30.0% |
| !! | TAATTTGCTTCCCATGAATT+TGG | + | chr7.3:55998720-55998739 | MS.gene66865:intron | 30.0% |
| ACTGCATGGGATGATTAATA+AGG | + | chr7.3:55998264-55998283 | MS.gene66865:intron | 35.0% | |
| AGAATGCATATCCATCCAAA+TGG | - | chr7.3:55997789-55997808 | None:intergenic | 35.0% | |
| AGAATTAGCGTAGTGCAAAA+TGG | - | chr7.3:55997103-55997122 | None:intergenic | 35.0% | |
| AGAGAGACATCAACTTTAGA+AGG | - | chr7.3:55997698-55997717 | None:intergenic | 35.0% | |
| AGTAATGTCCCCATATTTGA+AGG | - | chr7.3:55997501-55997520 | None:intergenic | 35.0% | |
| AGTACTTACAATAAGTGGGA+CGG | + | chr7.3:55997957-55997976 | MS.gene66865:CDS | 35.0% | |
| CATGATGAATTAACAAACCG+AGG | - | chr7.3:55997060-55997079 | None:intergenic | 35.0% | |
| CTCAAAAGAAGGCTTCATTT+GGG | + | chr7.3:55998493-55998512 | MS.gene66865:intron | 35.0% | |
| CTGCATGGGATGATTAATAA+GGG | + | chr7.3:55998265-55998284 | MS.gene66865:intron | 35.0% | |
| CTTCTTTAACCTGTCTCTTT+AGG | + | chr7.3:55998870-55998889 | MS.gene66865:intron | 35.0% | |
| GCTTTGCTACCTAAAACTTA+AGG | + | chr7.3:55998515-55998534 | MS.gene66865:intron | 35.0% | |
| GTGTGTGATTCCAAATTCAT+GGG | - | chr7.3:55998733-55998752 | None:intergenic | 35.0% | |
| GTTGATGTCTCTCTCATTAA+TGG | + | chr7.3:55997704-55997723 | MS.gene66865:intron | 35.0% | |
| TGCATGGGATGATTAATAAG+GGG | + | chr7.3:55998266-55998285 | MS.gene66865:intron | 35.0% | |
| TGTGTGTGATTCCAAATTCA+TGG | - | chr7.3:55998734-55998753 | None:intergenic | 35.0% | |
| TTAGTATCTCTTGACAATGC+TGG | + | chr7.3:55998919-55998938 | MS.gene66865:CDS | 35.0% | |
| TTATCTTGATCAGAAAGGCT+AGG | - | chr7.3:55997150-55997169 | None:intergenic | 35.0% | |
| TTCAAACCCTCATCTGAAAA+TGG | + | chr7.3:55997421-55997440 | MS.gene66865:CDS | 35.0% | |
| TTCATGGATTCCTCAAAAGA+AGG | + | chr7.3:55998482-55998501 | MS.gene66865:intron | 35.0% | |
| TTCTCATCTGAATTGTAGCA+TGG | + | chr7.3:55997904-55997923 | MS.gene66865:intron | 35.0% | |
| ! | AGCTGCTATTTGATAACACT+AGG | - | chr7.3:55998566-55998585 | None:intergenic | 35.0% |
| ! | GGATATGCATTCTTTGTTGT+TGG | + | chr7.3:55997796-55997815 | MS.gene66865:intron | 35.0% |
| ! | TTGTTGTTGGGTGAGAATTT+AGG | + | chr7.3:55997809-55997828 | MS.gene66865:intron | 35.0% |
| !! | AATGGTGCTATATAGCATAG+TGG | + | chr7.3:55998588-55998607 | MS.gene66865:intron | 35.0% |
| !! | CTCGGTTTGTTAATTCATCA+TGG | + | chr7.3:55997058-55997077 | MS.gene66865:CDS | 35.0% |
| !! | GCAATTCTAAAGCGCTATAT+CGG | - | chr7.3:55998674-55998693 | None:intergenic | 35.0% |
| !! | GCAGAAGTACTTACAATAAG+TGG | + | chr7.3:55997952-55997971 | MS.gene66865:CDS | 35.0% |
| !!! | TAGCATGGATTTTTGGAGTA+TGG | + | chr7.3:55997919-55997938 | MS.gene66865:intron | 35.0% |
| AAATGGTCCAGTCTCATGTT+GGG | - | chr7.3:55998408-55998427 | None:intergenic | 40.0% | |
| AGACCTCCAGAGCTTATAAA+CGG | + | chr7.3:55997548-55997567 | MS.gene66865:CDS | 40.0% | |
| CACTTTCCGTTTATAAGCTC+TGG | - | chr7.3:55997557-55997576 | None:intergenic | 40.0% | |
| CAGAGCTTATAAACGGAAAG+TGG | + | chr7.3:55997555-55997574 | MS.gene66865:CDS | 40.0% | |
| CATATTTGAAGGAACCTTGC+GGG | - | chr7.3:55997490-55997509 | None:intergenic | 40.0% | |
| CCATATTTGAAGGAACCTTG+CGG | - | chr7.3:55997491-55997510 | None:intergenic | 40.0% | |
| CCTCAAAAGAAGGCTTCATT+TGG | + | chr7.3:55998492-55998511 | MS.gene66865:intron | 40.0% | |
| CGCAAGGTTCCTTCAAATAT+GGG | + | chr7.3:55997489-55997508 | MS.gene66865:CDS | 40.0% | |
| GATGAACGTTGGATTGAGAA+CGG | - | chr7.3:55998235-55998254 | None:intergenic | 40.0% | |
| GCAAGGTTCCTTCAAATATG+GGG | + | chr7.3:55997490-55997509 | MS.gene66865:CDS | 40.0% | |
| TATAGTTGGAATGTGTCTGC+CGG | + | chr7.3:55997449-55997468 | MS.gene66865:CDS | 40.0% | |
| TCTCATTAATGGCACTACAG+AGG | + | chr7.3:55997715-55997734 | MS.gene66865:intron | 40.0% | |
| TGAATTAACAAACCGAGGAC+TGG | - | chr7.3:55997055-55997074 | None:intergenic | 40.0% | |
| TGCATATCCATCCAAATGGT+AGG | - | chr7.3:55997785-55997804 | None:intergenic | 40.0% | |
| TGTCTCTTTAGGTCTTTCCT+GGG | + | chr7.3:55998881-55998900 | MS.gene66865:intron | 40.0% | |
| TTCCAAATAGAGGGATGAAC+AGG | + | chr7.3:55997672-55997691 | MS.gene66865:intron | 40.0% | |
| TTGCACTACGCTAATTCTCA+GGG | + | chr7.3:55997105-55997124 | MS.gene66865:CDS | 40.0% | |
| TTTGCACTACGCTAATTCTC+AGG | + | chr7.3:55997104-55997123 | MS.gene66865:CDS | 40.0% | |
| ! | ATGGCACTACAGAGGTTTTA+TGG | + | chr7.3:55997723-55997742 | MS.gene66865:intron | 40.0% |
| ! | CCAAATGAAGCCTTCTTTTG+AGG | - | chr7.3:55998495-55998514 | None:intergenic | 40.0% |
| ! | TTTCCGTTTATAAGCTCTGG+AGG | - | chr7.3:55997554-55997573 | None:intergenic | 40.0% |
| AACGTTGGATTGAGAACGGA+CGG | - | chr7.3:55998231-55998250 | None:intergenic | 45.0% | |
| AAGTGGCGAACTACCCTTAA+TGG | + | chr7.3:55997572-55997591 | MS.gene66865:CDS | 45.0% | |
| ACTACATTGTTGCCAGTCCT+CGG | + | chr7.3:55997040-55997059 | MS.gene66865:CDS | 45.0% | |
| AGTGGCAGTTGGAATGAGAT+CGG | + | chr7.3:55998137-55998156 | MS.gene66865:intron | 45.0% | |
| AGTTGGAATGAGATCGGATG+GGG | + | chr7.3:55998143-55998162 | MS.gene66865:intron | 45.0% | |
| ATACCAGGAGTTGAGGTTCT+CGG | - | chr7.3:55998962-55998981 | None:intergenic | 45.0% | |
| ATCCATCCAAATGGTAGGAC+TGG | - | chr7.3:55997780-55997799 | None:intergenic | 45.0% | |
| CAGGAAAGACCTAAAGAGAC+AGG | - | chr7.3:55998882-55998901 | None:intergenic | 45.0% | |
| CAGTTGGAATGAGATCGGAT+GGG | + | chr7.3:55998142-55998161 | MS.gene66865:intron | 45.0% | |
| CCGCAAGGTTCCTTCAAATA+TGG | + | chr7.3:55997488-55997507 | MS.gene66865:CDS | 45.0% | |
| CTCTTGACAATGCTGGCATT+TGG | + | chr7.3:55998926-55998945 | MS.gene66865:CDS | 45.0% | |
| CTGTCTCTTTAGGTCTTTCC+TGG | + | chr7.3:55998880-55998899 | MS.gene66865:intron | 45.0% | |
| GAAATGGTCCAGTCTCATGT+TGG | - | chr7.3:55998409-55998428 | None:intergenic | 45.0% | |
| GTCTCTTTAGGTCTTTCCTG+GGG | + | chr7.3:55998882-55998901 | MS.gene66865:intron | 45.0% | |
| TAATGTTGCGCAAGCGTCAA+AGG | - | chr7.3:55997623-55997642 | None:intergenic | 45.0% | |
| TGATCAGAAAGGCTAGGAAG+AGG | - | chr7.3:55997144-55997163 | None:intergenic | 45.0% | |
| TTACAATAAGTGGGACGGTG+TGG | + | chr7.3:55997962-55997981 | MS.gene66865:CDS | 45.0% | |
| TTATGCAGTCAGCACATCAG+TGG | + | chr7.3:55998119-55998138 | MS.gene66865:intron | 45.0% | |
| ! | GACGGTCCAAATTTGAAGCT+CGG | - | chr7.3:55998213-55998232 | None:intergenic | 45.0% |
| !! | TCATCATGGACTAGAGCTAC+TGG | + | chr7.3:55997072-55997091 | MS.gene66865:CDS | 45.0% |
| AATTCTCAGGGTCCTGCTTC+AGG | + | chr7.3:55997117-55997136 | MS.gene66865:CDS | 50.0% | |
| CAAATGGTAGGACTGGACAG+TGG | - | chr7.3:55997773-55997792 | None:intergenic | 50.0% | |
| CACTGTCCAGTCCTACCATT+TGG | + | chr7.3:55997771-55997790 | MS.gene66865:intron | 50.0% | |
| GCAGTTGGAATGAGATCGGA+TGG | + | chr7.3:55998141-55998160 | MS.gene66865:intron | 50.0% | |
| GGCCTGTTCATCCCTCTATT+TGG | - | chr7.3:55997677-55997696 | None:intergenic | 50.0% | |
| GTCAGCACATCGATGAACGT+TGG | - | chr7.3:55998246-55998265 | None:intergenic | 50.0% | |
| GTCCAGTCCTACCATTTGGA+TGG | + | chr7.3:55997775-55997794 | MS.gene66865:intron | 50.0% | |
| GTCTTGACCCAACATGAGAC+TGG | + | chr7.3:55998398-55998417 | MS.gene66865:intron | 50.0% | |
| TTGAAGGAACCTTGCGGGTT+TGG | - | chr7.3:55997485-55997504 | None:intergenic | 50.0% | |
| TTTAGGTCTTTCCTGGGGCT+TGG | + | chr7.3:55998887-55998906 | MS.gene66865:intron | 50.0% | |
| !! | AGCGTCAAAGGTGTTGAAGG+TGG | - | chr7.3:55997611-55997630 | None:intergenic | 50.0% |
| !! | CATCGATGTGCTGACTGCAT+GGG | + | chr7.3:55998251-55998270 | MS.gene66865:intron | 50.0% |
| !! | GCAAGCGTCAAAGGTGTTGA+AGG | - | chr7.3:55997614-55997633 | None:intergenic | 50.0% |
| !! | TCATCGATGTGCTGACTGCA+TGG | + | chr7.3:55998250-55998269 | MS.gene66865:intron | 50.0% |
| AAAATGGCTGTCCAAGCCCC+AGG | - | chr7.3:55998901-55998920 | None:intergenic | 55.0% | |
| AGTTGAGGTTCTCGGCACGA+AGG | - | chr7.3:55998954-55998973 | None:intergenic | 55.0% | |
| CTAGGAAGAGGACCTGAAGC+AGG | - | chr7.3:55997132-55997151 | None:intergenic | 55.0% | |
| GTCAGCACATCAGTGGCAGT+TGG | + | chr7.3:55998126-55998145 | MS.gene66865:intron | 55.0% | |
| GTGCCGAGAACCTCAACTCC+TGG | + | chr7.3:55998956-55998975 | MS.gene66865:CDS | 60.0% | |
| CGGGTTTGGACGTGCAGCAC+CGG | - | chr7.3:55997471-55997490 | None:intergenic | 65.0% | |
| GCTGCACGTCCAAACCCGCA+AGG | + | chr7.3:55997473-55997492 | MS.gene66865:CDS | 65.0% | |
| TGTGGCTCGCTGCACGACAC+AGG | + | chr7.3:55997980-55997999 | MS.gene66865:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 55996973 | 55998984 | 55996973 | ID=MS.gene66865 |
| chr7.3 | mRNA | 55996973 | 55998984 | 55996973 | ID=MS.gene66865.t1;Parent=MS.gene66865 |
| chr7.3 | exon | 55996973 | 55997200 | 55996973 | ID=MS.gene66865.t1.exon1;Parent=MS.gene66865.t1 |
| chr7.3 | CDS | 55996973 | 55997200 | 55996973 | ID=cds.MS.gene66865.t1;Parent=MS.gene66865.t1 |
| chr7.3 | exon | 55997410 | 55997593 | 55997410 | ID=MS.gene66865.t1.exon2;Parent=MS.gene66865.t1 |
| chr7.3 | CDS | 55997410 | 55997593 | 55997410 | ID=cds.MS.gene66865.t1;Parent=MS.gene66865.t1 |
| chr7.3 | exon | 55997922 | 55998001 | 55997922 | ID=MS.gene66865.t1.exon3;Parent=MS.gene66865.t1 |
| chr7.3 | CDS | 55997922 | 55998001 | 55997922 | ID=cds.MS.gene66865.t1;Parent=MS.gene66865.t1 |
| chr7.3 | exon | 55998892 | 55998984 | 55998892 | ID=MS.gene66865.t1.exon4;Parent=MS.gene66865.t1 |
| chr7.3 | CDS | 55998892 | 55998984 | 55998892 | ID=cds.MS.gene66865.t1;Parent=MS.gene66865.t1 |
| Gene Sequence |
| Protein sequence |
