Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67225.t1 | AET04444.2 | 92.1 | 252 | 15 | 1 | 1 | 252 | 66 | 312 | 9.40E-117 | 430.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67225.t1 | Q8RXJ0 | 37.5 | 280 | 172 | 2 | 1 | 280 | 91 | 367 | 1.8e-36 | 154.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67225.t1 | G7L8V4 | 92.1 | 252 | 15 | 1 | 1 | 252 | 66 | 312 | 6.8e-117 | 430.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058668 | MS.gene67225 | 0.800195 | 1.61E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67225.t1 | MTR_8g088800 | 81.250 | 368 | 43 | 4 | 1 | 354 | 66 | 421 | 0.0 | 572 |
| MS.gene67225.t1 | MTR_8g088840 | 67.847 | 367 | 117 | 1 | 1 | 366 | 93 | 459 | 2.28e-167 | 475 |
| MS.gene67225.t1 | MTR_8g088840 | 68.955 | 335 | 104 | 0 | 1 | 335 | 93 | 427 | 3.27e-154 | 442 |
| MS.gene67225.t1 | MTR_4g049650 | 54.865 | 370 | 105 | 3 | 1 | 370 | 91 | 398 | 1.37e-123 | 362 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67225.t1 | AT1G61000 | 41.329 | 346 | 200 | 2 | 1 | 346 | 91 | 433 | 4.20e-77 | 244 |
Find 63 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTCAATAATTGGTGATA+TGG | 0.196111 | 4.2:-12533146 | None:intergenic |
| ATGACATCTGTTTGTTGTTC+AGG | 0.210075 | 4.2:-12533421 | None:intergenic |
| AAAGAATCATAAAGCATTAA+AGG | 0.239722 | 4.2:+12535532 | MS.gene67225:CDS |
| TCCCTCCTCAGTTGAGCTTA+TGG | 0.258527 | 4.2:+12535944 | MS.gene67225:intron |
| GTGTTGATTTCTTCAATAAT+TGG | 0.259678 | 4.2:-12533154 | None:intergenic |
| GTCAAATCCAGCTACTTTAA+TGG | 0.261659 | 4.2:-12536917 | None:intergenic |
| AGTAGCTGGATTTGACAATA+TGG | 0.313329 | 4.2:+12536924 | MS.gene67225:CDS |
| TTCAATAGATTTAGCTGAAT+AGG | 0.327756 | 4.2:-12535510 | None:intergenic |
| TAAGTCCCTTCAGGTCAATT+TGG | 0.330186 | 4.2:+12535583 | MS.gene67225:CDS |
| AAGCTTAGTCCATAGTTAAA+TGG | 0.349716 | 4.2:-12536950 | None:intergenic |
| AACTCGGTTCGACGAGGATC+AGG | 0.373508 | 4.2:-12532865 | None:intergenic |
| TTCTCAGTTTCTGCATCCAT+TGG | 0.413020 | 4.2:+12532902 | MS.gene67225:CDS |
| AGTTATGGATAAGTCCCTTC+AGG | 0.419719 | 4.2:+12535574 | MS.gene67225:CDS |
| ACTTGATGACGAAGAAGTTA+TGG | 0.442001 | 4.2:+12535559 | MS.gene67225:CDS |
| AAGAGAGATGCCTTATGTTC+AGG | 0.450527 | 4.2:+12533355 | MS.gene67225:CDS |
| AATCCTATCCTCTTCGATCT+TGG | 0.453367 | 4.2:-12533194 | None:intergenic |
| GAAATATTCATTCAATTTCG+CGG | 0.454407 | 4.2:+12532831 | MS.gene67225:CDS |
| AACTGTGGAAATGGATGATA+AGG | 0.455579 | 4.2:+12533475 | MS.gene67225:CDS |
| TTCAGGTCAATTTGGTTGAA+AGG | 0.455745 | 4.2:+12535591 | MS.gene67225:CDS |
| GGTGCAGGTTATACAAGAAC+AGG | 0.460584 | 4.2:+12535235 | MS.gene67225:CDS |
| GAAGGAGAAAACTGTGGAAA+TGG | 0.471678 | 4.2:+12533466 | MS.gene67225:CDS |
| GCATCCACCTCCTGAACATA+AGG | 0.477376 | 4.2:-12533365 | None:intergenic |
| TATTGAAGAAATCAACACTT+TGG | 0.480199 | 4.2:+12533159 | MS.gene67225:CDS |
| GACTGATTTGAAGAAGTTGA+AGG | 0.499065 | 4.2:+12533448 | MS.gene67225:CDS |
| AGTGCGACCATTAAAGTAGC+TGG | 0.502330 | 4.2:+12536910 | MS.gene67225:CDS |
| GCTGTGACATTGAAATAAGA+AGG | 0.503399 | 4.2:+12536063 | MS.gene67225:CDS |
| CGAAGAGGATAGGATTATGC+AGG | 0.510366 | 4.2:+12533201 | MS.gene67225:CDS |
| ATTGCACATGCGATTGAAAG+TGG | 0.511159 | 4.2:+12536880 | MS.gene67225:CDS |
| TTGGTTGAAAGGCAAACTAA+AGG | 0.517028 | 4.2:+12535602 | MS.gene67225:CDS |
| ACAGCTCTTTGATTCCATCT+CGG | 0.529333 | 4.2:-12536045 | None:intergenic |
| GGAAGGGATGAAGAAGCAGT+TGG | 0.531481 | 4.2:+12535965 | MS.gene67225:CDS |
| TGTTCAGGAGGTGGATGCAC+AGG | 0.546856 | 4.2:+12533370 | MS.gene67225:CDS |
| CAACGAGGGCAGTCTTCTTG+TGG | 0.547785 | 4.2:-12534666 | None:intergenic |
| GAATCACTGCAAGAAGGTGC+AGG | 0.554185 | 4.2:+12535220 | MS.gene67225:CDS |
| ACTTTCAATCGCATGTGCAA+TGG | 0.558375 | 4.2:-12536878 | None:intergenic |
| TCCTCAGTTGAGCTTATGGA+AGG | 0.559022 | 4.2:+12535948 | MS.gene67225:intron |
| GAGCCAAGATCGAAGAGGAT+AGG | 0.559410 | 4.2:+12533191 | MS.gene67225:CDS |
| GGTAAATAGTAGAATTACCT+TGG | 0.560260 | 4.2:+12536421 | MS.gene67225:CDS |
| TGAAGAATGCAAAGAAGCAA+GGG | 0.568057 | 4.2:+12533331 | MS.gene67225:CDS |
| TGTTATGTTATAGTTGACGT+TGG | 0.570121 | 4.2:+12533304 | MS.gene67225:intron |
| TTTCAACCAAATTGACCTGA+AGG | 0.577021 | 4.2:-12535589 | None:intergenic |
| GATGCCTTATGTTCAGGAGG+TGG | 0.577640 | 4.2:+12533361 | MS.gene67225:CDS |
| CCTCGTTGAAGTTTATGCCA+AGG | 0.579949 | 4.2:+12534681 | MS.gene67225:CDS |
| TTGAAGAATGCAAAGAAGCA+AGG | 0.585930 | 4.2:+12533330 | MS.gene67225:CDS |
| AAAGAAATTAGCTCAAGAGA+AGG | 0.593070 | 4.2:+12534609 | MS.gene67225:CDS |
| TTACAATTGACAGGTGGATG+CGG | 0.596345 | 4.2:+12536400 | MS.gene67225:intron |
| TGTTGAGGCTGAGTATTCAA+AGG | 0.614515 | 4.2:+12536091 | MS.gene67225:CDS |
| TTCAACCAAATTGACCTGAA+GGG | 0.620228 | 4.2:-12535588 | None:intergenic |
| TCAGTCGCCTGATAAAGTAC+AGG | 0.621157 | 4.2:+12533960 | MS.gene67225:CDS |
| GAAGTTGAAGGAGAAAACTG+TGG | 0.622296 | 4.2:+12533460 | MS.gene67225:CDS |
| AAATTGAATGAATATTTCTG+AGG | 0.626572 | 4.2:-12532826 | None:intergenic |
| ACAACAAACAGATGTCATTG+AGG | 0.632333 | 4.2:+12533426 | MS.gene67225:CDS |
| CGAGAGAGCCAAGATCGAAG+AGG | 0.637014 | 4.2:+12533186 | MS.gene67225:CDS |
| CCTCAGTTGAGCTTATGGAA+GGG | 0.637886 | 4.2:+12535949 | MS.gene67225:intron |
| TTGCACATGCGATTGAAAGT+GGG | 0.640805 | 4.2:+12536881 | MS.gene67225:CDS |
| AATGTCGAATCACTGCAAGA+AGG | 0.646032 | 4.2:+12535214 | MS.gene67225:CDS |
| AGAAGGCAAGAAACGCTGAA+AGG | 0.647873 | 4.2:+12534626 | MS.gene67225:CDS |
| AGAGATGCCTTATGTTCAGG+AGG | 0.660324 | 4.2:+12533358 | MS.gene67225:CDS |
| AATAAGAAGGAGACATGTTG+AGG | 0.665309 | 4.2:+12536076 | MS.gene67225:CDS |
| CTTGGCATAAACTTCAACGA+GGG | 0.665953 | 4.2:-12534680 | None:intergenic |
| GAAGAATGCAAAGAAGCAAG+GGG | 0.687158 | 4.2:+12533332 | MS.gene67225:CDS |
| CCTTGGCATAAACTTCAACG+AGG | 0.729265 | 4.2:-12534681 | None:intergenic |
| AGAAACTGAGAAGAGCGCCG+AGG | 0.742803 | 4.2:-12532891 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAACTTTTTTTGTTTTTT+TGG | + | chr4.2:12535353-12535372 | MS.gene67225:intron | 10.0% |
| !!! | ATTTTCAACATTATTTATAT+TGG | + | chr4.2:12535023-12535042 | MS.gene67225:intron | 10.0% |
| !!! | CATCTTATTTATTTATATAA+AGG | - | chr4.2:12534840-12534859 | None:intergenic | 10.0% |
| !! | ATATTAAAAAACTGACAATT+AGG | - | chr4.2:12533106-12533125 | None:intergenic | 15.0% |
| !! | ATGATATCATATATGAAAAA+TGG | + | chr4.2:12534331-12534350 | MS.gene67225:intron | 15.0% |
| !! | TAACATGGAAAAAAAAATAA+TGG | - | chr4.2:12534028-12534047 | None:intergenic | 15.0% |
| !! | TAAGGAAATCAAATTTAAAT+AGG | - | chr4.2:12534563-12534582 | None:intergenic | 15.0% |
| !!! | TTTTACTTTTTCTGTTTTTT+TGG | + | chr4.2:12536672-12536691 | MS.gene67225:intron | 15.0% |
| !! | AAAAATTCTAATACCCTATT+TGG | + | chr4.2:12536550-12536569 | MS.gene67225:intron | 20.0% |
| !! | AAAATTATCTATATCTCTTC+GGG | + | chr4.2:12535110-12535129 | MS.gene67225:intron | 20.0% |
| !! | AAATCTATTGCATATACTAT+TGG | - | chr4.2:12533600-12533619 | None:intergenic | 20.0% |
| !! | AGTTATTCAATGAATTGAAA+AGG | + | chr4.2:12532999-12533018 | MS.gene67225:intron | 20.0% |
| !! | ATATCATATATGAAAAATGG+CGG | + | chr4.2:12534334-12534353 | MS.gene67225:intron | 20.0% |
| !! | CAAAATTATCTATATCTCTT+CGG | + | chr4.2:12535109-12535128 | MS.gene67225:intron | 20.0% |
| !! | GAAATCATAACAAAATAACA+TGG | - | chr4.2:12535858-12535877 | None:intergenic | 20.0% |
| !! | GAATATACAAAAAACTAACA+TGG | - | chr4.2:12534043-12534062 | None:intergenic | 20.0% |
| !! | TCACTATTAATTTCTTTGTT+TGG | + | chr4.2:12533766-12533785 | MS.gene67225:intron | 20.0% |
| !! | TTTAGTTATGGATGTATTTA+GGG | - | chr4.2:12536162-12536181 | None:intergenic | 20.0% |
| !!! | AAAGAATCATAAAGCATTAA+AGG | + | chr4.2:12535532-12535551 | MS.gene67225:CDS | 20.0% |
| !!! | AAATTGAATGAATATTTCTG+AGG | - | chr4.2:12532829-12532848 | None:intergenic | 20.0% |
| !!! | AATAATTGACTTATTATGCT+TGG | + | chr4.2:12536826-12536845 | MS.gene67225:intron | 20.0% |
| !!! | ACATTGTTAGTTTGAAATAA+TGG | + | chr4.2:12534237-12534256 | MS.gene67225:intron | 20.0% |
| !!! | ATATTGTATTTGCGTTTTAT+TGG | + | chr4.2:12534170-12534189 | MS.gene67225:intron | 20.0% |
| !!! | ATTGTCAGTTTTTTAATATC+AGG | + | chr4.2:12533107-12533126 | MS.gene67225:intron | 20.0% |
| !!! | ATTTTTTGTTTACAATTGAC+AGG | + | chr4.2:12536391-12536410 | MS.gene67225:intron | 20.0% |
| !!! | TTCTAACAAACACAATATTT+TGG | - | chr4.2:12534738-12534757 | None:intergenic | 20.0% |
| !!! | TTTGATTTTGTGAACAAAAT+AGG | - | chr4.2:12534091-12534110 | None:intergenic | 20.0% |
| !!! | TTTGTTTTTTTGGATTTGAA+TGG | + | chr4.2:12535363-12535382 | MS.gene67225:intron | 20.0% |
| !!! | TTTTTTTTTTTCCTCTCTTT+TGG | - | chr4.2:12533069-12533088 | None:intergenic | 20.0% |
| ! | AAAAATACCTGTACTTTATC+AGG | - | chr4.2:12533970-12533989 | None:intergenic | 25.0% |
| ! | AAATTATCTATATCTCTTCG+GGG | + | chr4.2:12535111-12535130 | MS.gene67225:intron | 25.0% |
| ! | AACACAAAATGTATTATGTC+AGG | - | chr4.2:12534201-12534220 | None:intergenic | 25.0% |
| ! | AACTAAATATTGAAAGCAAG+TGG | + | chr4.2:12534416-12534435 | MS.gene67225:intron | 25.0% |
| ! | ACACAAAATGTATTATGTCA+GGG | - | chr4.2:12534200-12534219 | None:intergenic | 25.0% |
| ! | ATTGAATGACAACATCTATA+AGG | - | chr4.2:12535005-12535024 | None:intergenic | 25.0% |
| ! | CATAATCTTACTTGATATTG+AGG | + | chr4.2:12533570-12533589 | MS.gene67225:intron | 25.0% |
| ! | CTTTAGTTATGGATGTATTT+AGG | - | chr4.2:12536163-12536182 | None:intergenic | 25.0% |
| ! | GAAATATTCATTCAATTTCG+CGG | + | chr4.2:12532831-12532850 | MS.gene67225:CDS | 25.0% |
| ! | GAACAAACATGAACATAAAA+TGG | + | chr4.2:12534944-12534963 | MS.gene67225:intron | 25.0% |
| ! | TACATTATGGAATGAGTAAA+TGG | - | chr4.2:12535080-12535099 | None:intergenic | 25.0% |
| ! | TAGTATATTAATTCTTGTGC+TGG | + | chr4.2:12533829-12533848 | MS.gene67225:intron | 25.0% |
| ! | TATGCAATAGATTTCATTAG+AGG | + | chr4.2:12533606-12533625 | MS.gene67225:intron | 25.0% |
| ! | TATTGAAGAAATCAACACTT+TGG | + | chr4.2:12533159-12533178 | MS.gene67225:CDS | 25.0% |
| ! | TCATGCTAAGTTTCTATTAT+TGG | - | chr4.2:12533543-12533562 | None:intergenic | 25.0% |
| ! | TGTTTCAATTTCAAAACACT+GGG | + | chr4.2:12534765-12534784 | MS.gene67225:intron | 25.0% |
| ! | TTCAATAGATTTAGCTGAAT+AGG | - | chr4.2:12535513-12535532 | None:intergenic | 25.0% |
| ! | TTGTTTCAATTTCAAAACAC+TGG | + | chr4.2:12534764-12534783 | MS.gene67225:intron | 25.0% |
| ! | TTTGTTTGCAGTTTACATTA+TGG | - | chr4.2:12535093-12535112 | None:intergenic | 25.0% |
| !! | AAATTTTTGCTTATAAGTGC+CGG | + | chr4.2:12533023-12533042 | MS.gene67225:intron | 25.0% |
| !! | AATTGAATTTTCCCTTGTAA+TGG | + | chr4.2:12534913-12534932 | MS.gene67225:intron | 25.0% |
| !! | AGTAACGTTTTCTTTAGTTA+TGG | - | chr4.2:12536174-12536193 | None:intergenic | 25.0% |
| !! | ATTGAATTTTCCCTTGTAAT+GGG | + | chr4.2:12534914-12534933 | MS.gene67225:intron | 25.0% |
| !! | ATTTCCATTTTCCTATTATG+AGG | - | chr4.2:12536602-12536621 | None:intergenic | 25.0% |
| !! | ATTTTCTTGTATACCTGAAA+AGG | - | chr4.2:12535197-12535216 | None:intergenic | 25.0% |
| !! | TATAATTTGTATGTGTGTGT+TGG | + | chr4.2:12533256-12533275 | MS.gene67225:intron | 25.0% |
| !! | TTCTTCAATAATTGGTGATA+TGG | - | chr4.2:12533149-12533168 | None:intergenic | 25.0% |
| !!! | ACAAACACAATATTTTGGAA+TGG | - | chr4.2:12534733-12534752 | None:intergenic | 25.0% |
| !!! | AGATGATTTGTTTTTACGAT+TGG | + | chr4.2:12534855-12534874 | MS.gene67225:intron | 25.0% |
| !!! | ATTTTGTGTTTTTACCACAA+TGG | + | chr4.2:12534211-12534230 | MS.gene67225:intron | 25.0% |
| !!! | CAAAGGTATCTTTTATTAAG+CGG | + | chr4.2:12536108-12536127 | MS.gene67225:intron | 25.0% |
| !!! | GTGTTGATTTCTTCAATAAT+TGG | - | chr4.2:12533157-12533176 | None:intergenic | 25.0% |
| !!! | TGAAATTTTGAAGCCAAATA+GGG | - | chr4.2:12536566-12536585 | None:intergenic | 25.0% |
| !!! | TTGAAATTTTGAAGCCAAAT+AGG | - | chr4.2:12536567-12536586 | None:intergenic | 25.0% |
| !!! | TTTTCCTTGTTTGATATACA+GGG | - | chr4.2:12535337-12535356 | None:intergenic | 25.0% |
| !!! | TTTTTCCTTGTTTGATATAC+AGG | - | chr4.2:12535338-12535357 | None:intergenic | 25.0% |
| AAAGAAATTAGCTCAAGAGA+AGG | + | chr4.2:12534609-12534628 | MS.gene67225:CDS | 30.0% | |
| AATCGTGATTAGTATTCGTT+AGG | + | chr4.2:12536309-12536328 | MS.gene67225:intron | 30.0% | |
| AGATATTCTACTATGATCTG+TGG | + | chr4.2:12535419-12535438 | MS.gene67225:intron | 30.0% | |
| AGCGGAATATAAATCTCTAA+TGG | + | chr4.2:12536126-12536145 | MS.gene67225:intron | 30.0% | |
| AGTCAAATAACAAGACGATA+GGG | - | chr4.2:12535265-12535284 | None:intergenic | 30.0% | |
| ATAAAATCCTATACCTACAC+AGG | - | chr4.2:12534528-12534547 | None:intergenic | 30.0% | |
| ATTTGAATGGAACACATGAT+GGG | + | chr4.2:12535376-12535395 | MS.gene67225:intron | 30.0% | |
| CACAGGACATTTAGTAAAAA+AGG | - | chr4.2:12534299-12534318 | None:intergenic | 30.0% | |
| CATACCTCATAATAGGAAAA+TGG | + | chr4.2:12536595-12536614 | MS.gene67225:intron | 30.0% | |
| CTTGTGTGAATAGTTTATGT+TGG | + | chr4.2:12533697-12533716 | MS.gene67225:intron | 30.0% | |
| GAGATAAGAAATAATGTTGC+TGG | - | chr4.2:12536282-12536301 | None:intergenic | 30.0% | |
| GATATTCTACTATGATCTGT+GGG | + | chr4.2:12535420-12535439 | MS.gene67225:intron | 30.0% | |
| GGTAAATAGTAGAATTACCT+TGG | + | chr4.2:12536421-12536440 | MS.gene67225:CDS | 30.0% | |
| TAAATCATCATGCTAAACGA+AGG | - | chr4.2:12535294-12535313 | None:intergenic | 30.0% | |
| TATATTCAGCATCAGAAATC+TGG | - | chr4.2:12533891-12533910 | None:intergenic | 30.0% | |
| TGCTTCCAAAATAGGATAAA+CGG | - | chr4.2:12536520-12536539 | None:intergenic | 30.0% | |
| TGTTATGTTATAGTTGACGT+TGG | + | chr4.2:12533304-12533323 | MS.gene67225:intron | 30.0% | |
| TTAAACACGTATATGTGTGT+GGG | + | chr4.2:12535913-12535932 | MS.gene67225:intron | 30.0% | |
| TTCCTTATCTTGCATAAAGA+GGG | + | chr4.2:12534576-12534595 | MS.gene67225:intron | 30.0% | |
| TTCTTTAATCCCCATTACAA+GGG | - | chr4.2:12534927-12534946 | None:intergenic | 30.0% | |
| TTTAAACACGTATATGTGTG+TGG | + | chr4.2:12535912-12535931 | MS.gene67225:intron | 30.0% | |
| TTTCCTTATCTTGCATAAAG+AGG | + | chr4.2:12534575-12534594 | MS.gene67225:intron | 30.0% | |
| ! | ACTAACAATGTTTTCCATTG+TGG | - | chr4.2:12534228-12534247 | None:intergenic | 30.0% |
| ! | CACTTTATCAATTCCTTTTC+AGG | + | chr4.2:12535181-12535200 | MS.gene67225:intron | 30.0% |
| ! | CATTTTCCTATTATGAGGTA+TGG | - | chr4.2:12536597-12536616 | None:intergenic | 30.0% |
| ! | TTGAATTTTCCCTTGTAATG+GGG | + | chr4.2:12534915-12534934 | MS.gene67225:intron | 30.0% |
| ! | TTTAGATTTTCTTCCTGTGT+AGG | + | chr4.2:12534512-12534531 | MS.gene67225:intron | 30.0% |
| ! | TTTCCTTGTTTGATATACAG+GGG | - | chr4.2:12535336-12535355 | None:intergenic | 30.0% |
| ! | TTTTACTAAATGTCCTGTGA+GGG | + | chr4.2:12534300-12534319 | MS.gene67225:intron | 30.0% |
| ! | TTTTTACTAAATGTCCTGTG+AGG | + | chr4.2:12534299-12534318 | MS.gene67225:intron | 30.0% |
| !! | ATGAGCATGCATTGATTAAA+AGG | - | chr4.2:12534270-12534289 | None:intergenic | 30.0% |
| !! | TTTTGTTTACAATTGACAGG+TGG | + | chr4.2:12536394-12536413 | MS.gene67225:intron | 30.0% |
| !!! | AACACAATATTTTGGAATGG+AGG | - | chr4.2:12534730-12534749 | None:intergenic | 30.0% |
| !!! | ACACAATATTTTGGAATGGA+GGG | - | chr4.2:12534729-12534748 | None:intergenic | 30.0% |
| !!! | ATTAATTCTTGTGCTGGTTT+TGG | + | chr4.2:12533835-12533854 | MS.gene67225:intron | 30.0% |
| !!! | ATTTGTTTTTACGATTGGTG+GGG | + | chr4.2:12534860-12534879 | MS.gene67225:intron | 30.0% |
| !!! | GATTTGTTTTTACGATTGGT+GGG | + | chr4.2:12534859-12534878 | MS.gene67225:intron | 30.0% |
| !!! | TGATTTGTTTTTACGATTGG+TGG | + | chr4.2:12534858-12534877 | MS.gene67225:intron | 30.0% |
| !!! | TTTTTTACTGTCTAGGTAGT+TGG | - | chr4.2:12536024-12536043 | None:intergenic | 30.0% |
| AAAAATCATGCCTCAGTGAA+AGG | - | chr4.2:12535688-12535707 | None:intergenic | 35.0% | |
| AACTGTGGAAATGGATGATA+AGG | + | chr4.2:12533475-12533494 | MS.gene67225:CDS | 35.0% | |
| AATAAGAAGGAGACATGTTG+AGG | + | chr4.2:12536076-12536095 | MS.gene67225:CDS | 35.0% | |
| AATATTTGCACAGGCAGATA+GGG | - | chr4.2:12534155-12534174 | None:intergenic | 35.0% | |
| ACAACAAACAGATGTCATTG+AGG | + | chr4.2:12533426-12533445 | MS.gene67225:CDS | 35.0% | |
| AGAATCTGCAACAGAAAAAG+TGG | + | chr4.2:12536448-12536467 | MS.gene67225:CDS | 35.0% | |
| AGACAGTAAAAAATCCGAGA+TGG | + | chr4.2:12536031-12536050 | MS.gene67225:CDS | 35.0% | |
| AGTAGCTGGATTTGACAATA+TGG | + | chr4.2:12536924-12536943 | MS.gene67225:CDS | 35.0% | |
| AGTGAAAGGTAATTAGCCAA+CGG | - | chr4.2:12535674-12535693 | None:intergenic | 35.0% | |
| ATGCGAAGAGATAGAAAAAG+AGG | + | chr4.2:12536487-12536506 | MS.gene67225:CDS | 35.0% | |
| ATGTGATGATTATGCAGAAG+TGG | - | chr4.2:12532946-12532965 | None:intergenic | 35.0% | |
| ATTTAGCTGAATAGGCCTAT+AGG | - | chr4.2:12535505-12535524 | None:intergenic | 35.0% | |
| CAAAGATAAATCATACCTCG+TGG | - | chr4.2:12534803-12534822 | None:intergenic | 35.0% | |
| CGCAAATACAATATTTGCAC+AGG | - | chr4.2:12534164-12534183 | None:intergenic | 35.0% | |
| CTTCTCATCTACTAATCCAA+AGG | - | chr4.2:12533677-12533696 | None:intergenic | 35.0% | |
| GAAGAAGTGAAAGTAACCAA+TGG | - | chr4.2:12532921-12532940 | None:intergenic | 35.0% | |
| GAGTCAAATAACAAGACGAT+AGG | - | chr4.2:12535266-12535285 | None:intergenic | 35.0% | |
| GATTCTTTAGACCTTCCTAT+AGG | + | chr4.2:12535487-12535506 | MS.gene67225:intron | 35.0% | |
| GATTTGAATGGAACACATGA+TGG | + | chr4.2:12535375-12535394 | MS.gene67225:intron | 35.0% | |
| GCTGTGACATTGAAATAAGA+AGG | + | chr4.2:12536063-12536082 | MS.gene67225:CDS | 35.0% | |
| GTTCTTTAATCCCCATTACA+AGG | - | chr4.2:12534928-12534947 | None:intergenic | 35.0% | |
| GTTTCAATCTGTGTATGAGA+GGG | + | chr4.2:12536214-12536233 | MS.gene67225:intron | 35.0% | |
| TCATATATGAAAAATGGCGG+TGG | + | chr4.2:12534337-12534356 | MS.gene67225:intron | 35.0% | |
| TGAAGAATGCAAAGAAGCAA+GGG | + | chr4.2:12533331-12533350 | MS.gene67225:CDS | 35.0% | |
| TGCATAAATCCAACACAGTT+TGG | - | chr4.2:12534893-12534912 | None:intergenic | 35.0% | |
| TTCAACCAAATTGACCTGAA+GGG | - | chr4.2:12535591-12535610 | None:intergenic | 35.0% | |
| TTCAGGTCAATTTGGTTGAA+AGG | + | chr4.2:12535591-12535610 | MS.gene67225:CDS | 35.0% | |
| TTGAAGAATGCAAAGAAGCA+AGG | + | chr4.2:12533330-12533349 | MS.gene67225:CDS | 35.0% | |
| TTGGTTGAAAGGCAAACTAA+AGG | + | chr4.2:12535602-12535621 | MS.gene67225:CDS | 35.0% | |
| TTTCAACCAAATTGACCTGA+AGG | - | chr4.2:12535592-12535611 | None:intergenic | 35.0% | |
| TTTCCCCTGTATATCAAACA+AGG | + | chr4.2:12535330-12535349 | MS.gene67225:intron | 35.0% | |
| ! | GAGATAGAAAAAGAGGTATG+TGG | + | chr4.2:12536494-12536513 | MS.gene67225:intron | 35.0% |
| ! | GTCAAATCCAGCTACTTTAA+TGG | - | chr4.2:12536920-12536939 | None:intergenic | 35.0% |
| ! | TATATTGCAAGCTGCAGTTT+TGG | + | chr4.2:12533736-12533755 | MS.gene67225:intron | 35.0% |
| ! | TGGCAACTGATTCTAATGAT+TGG | - | chr4.2:12534008-12534027 | None:intergenic | 35.0% |
| ! | TTTTCTTCCTGTGTAGGTAT+AGG | + | chr4.2:12534518-12534537 | MS.gene67225:intron | 35.0% |
| !! | ACTTGATGACGAAGAAGTTA+TGG | + | chr4.2:12535559-12535578 | MS.gene67225:CDS | 35.0% |
| !! | ATGACATCTGTTTGTTGTTC+AGG | - | chr4.2:12533424-12533443 | None:intergenic | 35.0% |
| !! | GACTGATTTGAAGAAGTTGA+AGG | + | chr4.2:12533448-12533467 | MS.gene67225:CDS | 35.0% |
| !! | GGGTATTTTAAATATCCACG+AGG | + | chr4.2:12534785-12534804 | MS.gene67225:intron | 35.0% |
| !!! | TCTCGGATTTTTTACTGTCT+AGG | - | chr4.2:12536031-12536050 | None:intergenic | 35.0% |
| AAGAGAGATGCCTTATGTTC+AGG | + | chr4.2:12533355-12533374 | MS.gene67225:CDS | 40.0% | |
| AATCCTATCCTCTTCGATCT+TGG | - | chr4.2:12533197-12533216 | None:intergenic | 40.0% | |
| AATGTCGAATCACTGCAAGA+AGG | + | chr4.2:12535214-12535233 | MS.gene67225:CDS | 40.0% | |
| ACAGCTCTTTGATTCCATCT+CGG | - | chr4.2:12536048-12536067 | None:intergenic | 40.0% | |
| ACATTGCAGTGTGCTTAACA+AGG | - | chr4.2:12536750-12536769 | None:intergenic | 40.0% | |
| ACCACACATGCTTCCAAAAT+AGG | - | chr4.2:12536528-12536547 | None:intergenic | 40.0% | |
| ACTTTCAATCGCATGTGCAA+TGG | - | chr4.2:12536881-12536900 | None:intergenic | 40.0% | |
| AGCCCTCTTTATGCAAGATA+AGG | - | chr4.2:12534581-12534600 | None:intergenic | 40.0% | |
| AGTTATGGATAAGTCCCTTC+AGG | + | chr4.2:12535574-12535593 | MS.gene67225:CDS | 40.0% | |
| ATCTACGTGAGCAATTCATG+TGG | + | chr4.2:12533636-12533655 | MS.gene67225:intron | 40.0% | |
| ATTCCATTTCCAAATGCCGT+TGG | + | chr4.2:12535655-12535674 | MS.gene67225:intron | 40.0% | |
| ATTGCACATGCGATTGAAAG+TGG | + | chr4.2:12536880-12536899 | MS.gene67225:CDS | 40.0% | |
| CAATATTTGCACAGGCAGAT+AGG | - | chr4.2:12534156-12534175 | None:intergenic | 40.0% | |
| CTTGGCATAAACTTCAACGA+GGG | - | chr4.2:12534683-12534702 | None:intergenic | 40.0% | |
| GAAGAATGCAAAGAAGCAAG+GGG | + | chr4.2:12533332-12533351 | MS.gene67225:CDS | 40.0% | |
| GAAGGAGAAAACTGTGGAAA+TGG | + | chr4.2:12533466-12533485 | MS.gene67225:CDS | 40.0% | |
| GAAGTTGAAGGAGAAAACTG+TGG | + | chr4.2:12533460-12533479 | MS.gene67225:CDS | 40.0% | |
| GGATTAGGACATTGAACCTT+TGG | + | chr4.2:12533658-12533677 | MS.gene67225:intron | 40.0% | |
| GGTTTCAATCTGTGTATGAG+AGG | + | chr4.2:12536213-12536232 | MS.gene67225:intron | 40.0% | |
| GTTCAAACCATTCATCCACT+AGG | + | chr4.2:12536251-12536270 | MS.gene67225:intron | 40.0% | |
| TAAGTCCCTTCAGGTCAATT+TGG | + | chr4.2:12535583-12535602 | MS.gene67225:CDS | 40.0% | |
| TATCTGGTGACAACATACCT+TGG | - | chr4.2:12534701-12534720 | None:intergenic | 40.0% | |
| TCTACGTGAGCAATTCATGT+GGG | + | chr4.2:12533637-12533656 | MS.gene67225:intron | 40.0% | |
| TGAGCAATTCATGTGGGATT+AGG | + | chr4.2:12533643-12533662 | MS.gene67225:intron | 40.0% | |
| TGGCTAATTACCTTTCACTG+AGG | + | chr4.2:12535675-12535694 | MS.gene67225:intron | 40.0% | |
| TGTGTATGAGAGGGTTTGAA+GGG | + | chr4.2:12536223-12536242 | MS.gene67225:intron | 40.0% | |
| TGTTGAGGCTGAGTATTCAA+AGG | + | chr4.2:12536091-12536110 | MS.gene67225:CDS | 40.0% | |
| TTACAATTGACAGGTGGATG+CGG | + | chr4.2:12536400-12536419 | MS.gene67225:intron | 40.0% | |
| TTCTCAGTTTCTGCATCCAT+TGG | + | chr4.2:12532902-12532921 | MS.gene67225:CDS | 40.0% | |
| TTGCACATGCGATTGAAAGT+GGG | + | chr4.2:12536881-12536900 | MS.gene67225:CDS | 40.0% | |
| TTGCAGCCATACCTCATAAT+AGG | + | chr4.2:12536588-12536607 | MS.gene67225:intron | 40.0% | |
| ! | CAGATTGAAACCAGTGTTGA+CGG | - | chr4.2:12536205-12536224 | None:intergenic | 40.0% |
| ! | TGTGGCCGTTTATCCTATTT+TGG | + | chr4.2:12536512-12536531 | MS.gene67225:intron | 40.0% |
| ! | TGTTGCAGATTCTTTTGCCA+AGG | - | chr4.2:12536441-12536460 | None:intergenic | 40.0% |
| ! | TTGTATGTGTGTGTTGGTAC+TGG | + | chr4.2:12533262-12533281 | MS.gene67225:intron | 40.0% |
| !! | AAGGTGAGTTTGTTGTCTGA+TGG | + | chr4.2:12533494-12533513 | MS.gene67225:intron | 40.0% |
| !! | TCCTATTTTGGAAGCATGTG+TGG | + | chr4.2:12536524-12536543 | MS.gene67225:intron | 40.0% |
| AGAAGGCAAGAAACGCTGAA+AGG | + | chr4.2:12534626-12534645 | MS.gene67225:CDS | 45.0% | |
| AGAGATGCCTTATGTTCAGG+AGG | + | chr4.2:12533358-12533377 | MS.gene67225:CDS | 45.0% | |
| AGCTGAATAGGCCTATAGGA+AGG | - | chr4.2:12535501-12535520 | None:intergenic | 45.0% | |
| AGTGCGACCATTAAAGTAGC+TGG | + | chr4.2:12536910-12536929 | MS.gene67225:CDS | 45.0% | |
| ATCATCAATTCAGCCCTCAC+AGG | - | chr4.2:12534316-12534335 | None:intergenic | 45.0% | |
| ATCCAACACAGTTTGGCCAA+AGG | - | chr4.2:12534886-12534905 | None:intergenic | 45.0% | |
| CCTCAGTTGAGCTTATGGAA+GGG | + | chr4.2:12535949-12535968 | MS.gene67225:intron | 45.0% | |
| CCTCGTTGAAGTTTATGCCA+AGG | + | chr4.2:12534681-12534700 | MS.gene67225:CDS | 45.0% | |
| CCTTGGCATAAACTTCAACG+AGG | - | chr4.2:12534684-12534703 | None:intergenic | 45.0% | |
| CGAAGAGGATAGGATTATGC+AGG | + | chr4.2:12533201-12533220 | MS.gene67225:CDS | 45.0% | |
| CTGTGTATGAGAGGGTTTGA+AGG | + | chr4.2:12536222-12536241 | MS.gene67225:intron | 45.0% | |
| CTTCTTATCTCCGTCAACAC+TGG | + | chr4.2:12536192-12536211 | MS.gene67225:intron | 45.0% | |
| GAACGAGTAAGCCAAAAGAG+AGG | + | chr4.2:12533055-12533074 | MS.gene67225:intron | 45.0% | |
| GGTAATTAGCCAACGGCATT+TGG | - | chr4.2:12535667-12535686 | None:intergenic | 45.0% | |
| GGTGCAGGTTATACAAGAAC+AGG | + | chr4.2:12535235-12535254 | MS.gene67225:CDS | 45.0% | |
| TAGCCAACGGCATTTGGAAA+TGG | - | chr4.2:12535661-12535680 | None:intergenic | 45.0% | |
| TCAGTCGCCTGATAAAGTAC+AGG | + | chr4.2:12533960-12533979 | MS.gene67225:CDS | 45.0% | |
| TCCATAAGCTCAACTGAGGA+GGG | - | chr4.2:12535948-12535967 | None:intergenic | 45.0% | |
| TCCTCAGTTGAGCTTATGGA+AGG | + | chr4.2:12535948-12535967 | MS.gene67225:intron | 45.0% | |
| TTCCATAAGCTCAACTGAGG+AGG | - | chr4.2:12535949-12535968 | None:intergenic | 45.0% | |
| ! | GGTTTCACCTAGTGGATGAA+TGG | - | chr4.2:12536261-12536280 | None:intergenic | 45.0% |
| !! | ATGTTGCTGGTTTCACCTAG+TGG | - | chr4.2:12536269-12536288 | None:intergenic | 45.0% |
| !! | TTATAAGTGCCGGAGCTAAC+CGG | + | chr4.2:12533033-12533052 | MS.gene67225:intron | 45.0% |
| !!! | CTCTTTTGGCTTACTCGTTC+CGG | - | chr4.2:12533055-12533074 | None:intergenic | 45.0% |
| !!! | TTGCAAGCTGCAGTTTTGGA+AGG | + | chr4.2:12533740-12533759 | MS.gene67225:intron | 45.0% |
| !!! | ATCTTATTTATTTATATAAA+GGG | - | chr4.2:12534839-12534858 | None:intergenic | 5.0% |
| ATGAGAGGGTTTGAAGGGCA+TGG | + | chr4.2:12536228-12536247 | MS.gene67225:intron | 50.0% | |
| ATTTGCACAGGCAGATAGGG+TGG | - | chr4.2:12534152-12534171 | None:intergenic | 50.0% | |
| CCCTTCCATAAGCTCAACTG+AGG | - | chr4.2:12535952-12535971 | None:intergenic | 50.0% | |
| CTTGTGCAAACACGCAATGC+TGG | + | chr4.2:12535631-12535650 | MS.gene67225:intron | 50.0% | |
| GAGCCAAGATCGAAGAGGAT+AGG | + | chr4.2:12533191-12533210 | MS.gene67225:CDS | 50.0% | |
| GATGCCTTATGTTCAGGAGG+TGG | + | chr4.2:12533361-12533380 | MS.gene67225:CDS | 50.0% | |
| GCATCCACCTCCTGAACATA+AGG | - | chr4.2:12533368-12533387 | None:intergenic | 50.0% | |
| GGAAGGGATGAAGAAGCAGT+TGG | + | chr4.2:12535965-12535984 | MS.gene67225:CDS | 50.0% | |
| TCCCTCCTCAGTTGAGCTTA+TGG | + | chr4.2:12535944-12535963 | MS.gene67225:intron | 50.0% | |
| TTTACGATTGGTGGGGCCTT+TGG | + | chr4.2:12534867-12534886 | MS.gene67225:intron | 50.0% | |
| ! | AGGAAAAACTCGGTTCGACG+AGG | - | chr4.2:12532874-12532893 | None:intergenic | 50.0% |
| ! | CGTCGAACCGAGTTTTTCCT+CGG | + | chr4.2:12532874-12532893 | MS.gene67225:CDS | 50.0% |
| ! | GAATCACTGCAAGAAGGTGC+AGG | + | chr4.2:12535220-12535239 | MS.gene67225:CDS | 50.0% |
| ! | TGAGAGGGTTTGAAGGGCAT+GGG | + | chr4.2:12536229-12536248 | MS.gene67225:intron | 50.0% |
| ! | TTACTCGTTCCGGTTAGCTC+CGG | - | chr4.2:12533045-12533064 | None:intergenic | 50.0% |
| !! | AAGAGCGCCGAGGAAAAACT+CGG | - | chr4.2:12532884-12532903 | None:intergenic | 50.0% |
| !! | GGAATGGAGGGAGTACTATC+TGG | - | chr4.2:12534717-12534736 | None:intergenic | 50.0% |
| CAACGAGGGCAGTCTTCTTG+TGG | - | chr4.2:12534669-12534688 | None:intergenic | 55.0% | |
| CGAGAGAGCCAAGATCGAAG+AGG | + | chr4.2:12533186-12533205 | MS.gene67225:CDS | 55.0% | |
| GGCCTTTGGCCAAACTGTGT+TGG | + | chr4.2:12534881-12534900 | MS.gene67225:intron | 55.0% | |
| TGTTCAGGAGGTGGATGCAC+AGG | + | chr4.2:12533370-12533389 | MS.gene67225:CDS | 55.0% | |
| ! | AACTCGGTTCGACGAGGATC+AGG | - | chr4.2:12532868-12532887 | None:intergenic | 55.0% |
| !! | AGAAACTGAGAAGAGCGCCG+AGG | - | chr4.2:12532894-12532913 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 12532805 | 12536957 | 12532805 | ID=MS.gene67225 |
| chr4.2 | mRNA | 12532805 | 12536957 | 12532805 | ID=MS.gene67225.t1;Parent=MS.gene67225 |
| chr4.2 | exon | 12532805 | 12532923 | 12532805 | ID=MS.gene67225.t1.exon1;Parent=MS.gene67225.t1 |
| chr4.2 | CDS | 12532805 | 12532923 | 12532805 | ID=cds.MS.gene67225.t1;Parent=MS.gene67225.t1 |
| chr4.2 | exon | 12533129 | 12533222 | 12533129 | ID=MS.gene67225.t1.exon2;Parent=MS.gene67225.t1 |
| chr4.2 | CDS | 12533129 | 12533222 | 12533129 | ID=cds.MS.gene67225.t1;Parent=MS.gene67225.t1 |
| chr4.2 | exon | 12533317 | 12533496 | 12533317 | ID=MS.gene67225.t1.exon3;Parent=MS.gene67225.t1 |
| chr4.2 | CDS | 12533317 | 12533496 | 12533317 | ID=cds.MS.gene67225.t1;Parent=MS.gene67225.t1 |
| chr4.2 | exon | 12533892 | 12533981 | 12533892 | ID=MS.gene67225.t1.exon4;Parent=MS.gene67225.t1 |
| chr4.2 | CDS | 12533892 | 12533981 | 12533892 | ID=cds.MS.gene67225.t1;Parent=MS.gene67225.t1 |
| chr4.2 | exon | 12534595 | 12534702 | 12534595 | ID=MS.gene67225.t1.exon5;Parent=MS.gene67225.t1 |
| chr4.2 | CDS | 12534595 | 12534702 | 12534595 | ID=cds.MS.gene67225.t1;Parent=MS.gene67225.t1 |
| chr4.2 | exon | 12535203 | 12535256 | 12535203 | ID=MS.gene67225.t1.exon6;Parent=MS.gene67225.t1 |
| chr4.2 | CDS | 12535203 | 12535256 | 12535203 | ID=cds.MS.gene67225.t1;Parent=MS.gene67225.t1 |
| chr4.2 | exon | 12535509 | 12535623 | 12535509 | ID=MS.gene67225.t1.exon7;Parent=MS.gene67225.t1 |
| chr4.2 | CDS | 12535509 | 12535623 | 12535509 | ID=cds.MS.gene67225.t1;Parent=MS.gene67225.t1 |
| chr4.2 | exon | 12535955 | 12536112 | 12535955 | ID=MS.gene67225.t1.exon8;Parent=MS.gene67225.t1 |
| chr4.2 | CDS | 12535955 | 12536112 | 12535955 | ID=cds.MS.gene67225.t1;Parent=MS.gene67225.t1 |
| chr4.2 | exon | 12536413 | 12536508 | 12536413 | ID=MS.gene67225.t1.exon9;Parent=MS.gene67225.t1 |
| chr4.2 | CDS | 12536413 | 12536508 | 12536413 | ID=cds.MS.gene67225.t1;Parent=MS.gene67225.t1 |
| chr4.2 | exon | 12536859 | 12536957 | 12536859 | ID=MS.gene67225.t1.exon10;Parent=MS.gene67225.t1 |
| chr4.2 | CDS | 12536859 | 12536957 | 12536859 | ID=cds.MS.gene67225.t1;Parent=MS.gene67225.t1 |
| Gene Sequence |
| Protein sequence |
