Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67342.t1 | XP_013449093.2 | 94.5 | 1187 | 64 | 1 | 1 | 1187 | 1 | 1186 | 0.00E+00 | 2214.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67342.t1 | Q8HXL3 | 29.1 | 764 | 444 | 19 | 16 | 745 | 59 | 758 | 9.4e-83 | 310.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67342.t1 | A0A1S3EIY2 | 82.2 | 1194 | 186 | 6 | 1 | 1175 | 1 | 1187 | 0.0e+00 | 1883.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056173 | MS.gene67342 | 0.806761 | 7.03E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67342.t1 | MTR_7g066750 | 93.276 | 580 | 38 | 1 | 608 | 1187 | 2 | 580 | 0.0 | 1121 |
| MS.gene67342.t1 | MTR_7g066770 | 92.600 | 473 | 34 | 1 | 1 | 473 | 1 | 472 | 0.0 | 875 |
| MS.gene67342.t1 | MTR_8g062580 | 80.000 | 70 | 14 | 0 | 930 | 999 | 173 | 242 | 7.47e-27 | 111 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67342.t1 | AT3G09080 | 48.265 | 922 | 421 | 18 | 7 | 899 | 6 | 900 | 0.0 | 816 |
| MS.gene67342.t1 | AT3G09080 | 48.265 | 922 | 421 | 18 | 7 | 899 | 6 | 900 | 0.0 | 813 |
| MS.gene67342.t1 | AT3G09080 | 45.672 | 670 | 317 | 15 | 259 | 899 | 2 | 653 | 1.89e-177 | 548 |
| MS.gene67342.t1 | AT3G09080 | 42.725 | 756 | 363 | 19 | 195 | 899 | 87 | 823 | 2.82e-176 | 551 |
| MS.gene67342.t1 | AT3G09080 | 67.033 | 91 | 29 | 1 | 7 | 97 | 6 | 95 | 2.21e-27 | 121 |
Find 273 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATCAACTGTTAAATTTAA+AGG | 0.138639 | 7.3:-38142166 | None:intergenic |
| ACACCAGAATGTTGAGATTT+TGG | 0.147660 | 7.3:-38142076 | None:intergenic |
| ACAATGAAGCTCACCTTTAT+AGG | 0.190492 | 7.3:-38135975 | None:intergenic |
| TCCATTGTCTTCTAAAATAT+TGG | 0.199444 | 7.3:+38136818 | MS.gene67342:CDS |
| GAGTTCCAAATGTGCTTATT+TGG | 0.199468 | 7.3:+38128207 | MS.gene67342:CDS |
| CTTAAACTTGAGGAAATCTT+TGG | 0.207371 | 7.3:-38137977 | None:intergenic |
| AACTGCGAGGATCTGCTTTC+TGG | 0.233961 | 7.3:-38140343 | None:intergenic |
| TACAATCATGATACCTCTTT+TGG | 0.241048 | 7.3:+38135948 | MS.gene67342:CDS |
| ACACAACTCAAAGGCTTTAA+TGG | 0.243617 | 7.3:-38128301 | None:intergenic |
| TCAGATGGTATTTGAACTTC+TGG | 0.247197 | 7.3:-38137702 | None:intergenic |
| GGTATCTTTAAGCGACATTT+TGG | 0.253735 | 7.3:+38139694 | MS.gene67342:CDS |
| CTATTGGGTTCTTCATGTTT+AGG | 0.264565 | 7.3:+38130759 | MS.gene67342:CDS |
| AACAGTTGATGTTAATAATA+AGG | 0.265933 | 7.3:+38142177 | MS.gene67342:CDS |
| TTGCTTGAAACTTTGTTATC+AGG | 0.271652 | 7.3:-38129103 | None:intergenic |
| AGTAAATACTGTTGCTAGAT+TGG | 0.283546 | 7.3:+38140906 | MS.gene67342:CDS |
| ATATACGCATTGACTGATTC+AGG | 0.288362 | 7.3:+38129407 | MS.gene67342:CDS |
| CATCTATTGCTTCTTCTTTG+TGG | 0.289380 | 7.3:+38129336 | MS.gene67342:CDS |
| ATCGACAGTTGAACTTTCTT+TGG | 0.292133 | 7.3:-38140659 | None:intergenic |
| CAATTTCCCCATATAGGTCT+TGG | 0.292900 | 7.3:-38134273 | None:intergenic |
| TCAAACAACTAACTTGATTC+TGG | 0.295573 | 7.3:-38140973 | None:intergenic |
| GTGGTGGATATATTTACCTT+TGG | 0.297399 | 7.3:+38129063 | MS.gene67342:CDS |
| CAACACCCATTTCCTCATTA+AGG | 0.299474 | 7.3:-38139513 | None:intergenic |
| AGAACTTAAGAATGAACTAT+TGG | 0.301277 | 7.3:+38130743 | MS.gene67342:CDS |
| TAAAATATTGGAGAAAATAA+TGG | 0.301668 | 7.3:+38136830 | MS.gene67342:CDS |
| TGAGGAAATGGGTGTTGTTT+TGG | 0.303172 | 7.3:+38139519 | MS.gene67342:CDS |
| TTGTCCACCCAAGACCTATA+TGG | 0.311366 | 7.3:+38134265 | MS.gene67342:CDS |
| TAGTTCATTCTTAAGTTCTT+TGG | 0.311657 | 7.3:-38130739 | None:intergenic |
| TAACCTTATGTGTATTTGAT+AGG | 0.316655 | 7.3:-38139720 | None:intergenic |
| ACCAGTCCTCAGTACTAGTT+TGG | 0.325299 | 7.3:+38128858 | MS.gene67342:CDS |
| AATGTAGGAAGAACAATAAC+TGG | 0.327629 | 7.3:+38140932 | MS.gene67342:CDS |
| TATCCATCATAATGTTGATT+TGG | 0.330247 | 7.3:+38141943 | MS.gene67342:CDS |
| ATCTTTCTCAATTGAGAGAT+TGG | 0.332450 | 7.3:-38129303 | None:intergenic |
| TCTAGGAAAACTCAACAAAA+TGG | 0.333932 | 7.3:+38129227 | MS.gene67342:CDS |
| CTCTGTTTACACTGTTTGTA+TGG | 0.334541 | 7.3:+38137907 | MS.gene67342:CDS |
| ATGAGGATGTCTGTTCATTA+AGG | 0.335057 | 7.3:+38136952 | MS.gene67342:CDS |
| TGGTGGATATATTTACCTTT+GGG | 0.336691 | 7.3:+38129064 | MS.gene67342:CDS |
| ATTGCTTGTGCATGCAATAA+TGG | 0.342071 | 7.3:+38129911 | MS.gene67342:CDS |
| AAGCAGATCCTCGCAGTTCA+TGG | 0.346399 | 7.3:+38140348 | MS.gene67342:CDS |
| ATTTCCTCATTAAGGCTATT+AGG | 0.346821 | 7.3:-38139505 | None:intergenic |
| GGCGGTTACTTTCTTGCCTC+AGG | 0.348552 | 7.3:+38134301 | MS.gene67342:CDS |
| CTTAACTCATTTGCAGGATA+AGG | 0.350862 | 7.3:+38141904 | MS.gene67342:CDS |
| TTCAGCATGTCCTGTGGCCT+TGG | 0.351235 | 7.3:-38136137 | None:intergenic |
| TGCACTGCTAAAGGTTGTTC+TGG | 0.356229 | 7.3:+38130633 | MS.gene67342:CDS |
| CTGACAGCCCAGAATGAATA+AGG | 0.356579 | 7.3:-38129517 | None:intergenic |
| TAATAGCCTTAATGAGGAAA+TGG | 0.358145 | 7.3:+38139507 | MS.gene67342:CDS |
| CAAGGAATTCATCAGTTAGA+AGG | 0.360511 | 7.3:+38140197 | MS.gene67342:CDS |
| ACAAGTCTTAACTCATTTGC+AGG | 0.368117 | 7.3:+38141898 | MS.gene67342:CDS |
| TTTACTTTCTCAACAATTAG+TGG | 0.369623 | 7.3:-38140889 | None:intergenic |
| ACTCCAAAATCTCAACATTC+TGG | 0.370138 | 7.3:+38142073 | MS.gene67342:CDS |
| AACTGTTGAGAATTCTGTTC+GGG | 0.373464 | 7.3:-38130043 | None:intergenic |
| TTGCACATTCCTCATGCATA+TGG | 0.374165 | 7.3:+38130562 | MS.gene67342:CDS |
| GACGGTCGCTTTGTTGCGGC+TGG | 0.385091 | 7.3:+38128337 | MS.gene67342:CDS |
| GGTGATTCTTGATGTGAATT+CGG | 0.385679 | 7.3:+38128243 | MS.gene67342:CDS |
| TGAATTGAAAGGCCATCTAT+TGG | 0.387573 | 7.3:+38128907 | MS.gene67342:CDS |
| AAATTTAAAGGTTGATTGTC+AGG | 0.388305 | 7.3:-38142154 | None:intergenic |
| ACCAGCCAAATAAGCACATT+TGG | 0.390755 | 7.3:-38128212 | None:intergenic |
| TCCAAATGTGCTTATTTGGC+TGG | 0.393798 | 7.3:+38128211 | MS.gene67342:CDS |
| ATAATTTCAGCAACACTGAT+TGG | 0.394697 | 7.3:+38137870 | MS.gene67342:intron |
| AAGTTTCAAGCAACTTCATC+TGG | 0.395996 | 7.3:+38129113 | MS.gene67342:CDS |
| TACAATTAAGCGACGGTTTG+AGG | 0.396258 | 7.3:+38142039 | MS.gene67342:CDS |
| CTCAAGTACATTCTGCATCT+CGG | 0.396690 | 7.3:-38137945 | None:intergenic |
| CTACAAGCAGGAGGTTGATC+AGG | 0.397645 | 7.3:-38136882 | None:intergenic |
| GGCTTATTGCAGGACAAGAT+AGG | 0.397820 | 7.3:+38139449 | MS.gene67342:intron |
| ATAATGTTAACAGGTTATAC+TGG | 0.401055 | 7.3:+38136033 | MS.gene67342:intron |
| GAATCAGTCAATGCGTATAT+AGG | 0.401355 | 7.3:-38129404 | None:intergenic |
| ACGATTATCATCGCTGCTAT+TGG | 0.401558 | 7.3:-38129360 | None:intergenic |
| CTTATAGGATAAGAAGATAA+AGG | 0.401776 | 7.3:+38135890 | MS.gene67342:intron |
| CAACATTCTGGTGTTGAGTC+TGG | 0.401825 | 7.3:+38142085 | MS.gene67342:CDS |
| AGAACCTTGGTTACAGTATG+AGG | 0.402397 | 7.3:-38127563 | None:intergenic |
| GCTCTGCTGATGGTACAATT+AGG | 0.405561 | 7.3:+38130676 | MS.gene67342:CDS |
| CAGTCGCATTTAGAAGAATC+TGG | 0.406363 | 7.3:+38139610 | MS.gene67342:CDS |
| CATTGAGTGCTCACAGTCTC+TGG | 0.407864 | 7.3:-38137741 | None:intergenic |
| GGCTCATTCATCTCCTCAAC+AGG | 0.409618 | 7.3:+38142117 | MS.gene67342:CDS |
| GAACTTAAGAATGAACTATT+GGG | 0.412373 | 7.3:+38130744 | MS.gene67342:CDS |
| ATCAGTTGCAGCTTCTTCCT+TGG | 0.412973 | 7.3:-38140314 | None:intergenic |
| TGTCCACCCAAGACCTATAT+GGG | 0.413174 | 7.3:+38134266 | MS.gene67342:CDS |
| GCGATCATAGCCTCTACATC+TGG | 0.414060 | 7.3:+38130210 | MS.gene67342:CDS |
| AATTTCCCCATATAGGTCTT+GGG | 0.414993 | 7.3:-38134272 | None:intergenic |
| CTTGCAGTTCACTCCCTTCA+CGG | 0.415683 | 7.3:-38140717 | None:intergenic |
| TCAAGTACATTCTGCATCTC+GGG | 0.415781 | 7.3:-38137944 | None:intergenic |
| TGCTTTCTTGCATGCAGCTA+TGG | 0.421780 | 7.3:-38140743 | None:intergenic |
| AAGTTCAACTGTCGATCAGC+TGG | 0.422492 | 7.3:+38140666 | MS.gene67342:CDS |
| TGGCAGCGTTGGTAATCATT+CGG | 0.423996 | 7.3:+38134457 | MS.gene67342:CDS |
| TGAGCACTCAATGCTCTTCA+AGG | 0.424072 | 7.3:+38137751 | MS.gene67342:CDS |
| ATCAGATTACACATGTTTGC+AGG | 0.425631 | 7.3:+38133915 | MS.gene67342:CDS |
| CAAGAAAGCATTTGGTAGCT+TGG | 0.426350 | 7.3:+38140756 | MS.gene67342:CDS |
| AGAATTCTGTTCGGGAAATA+CGG | 0.426715 | 7.3:-38130035 | None:intergenic |
| TGTTGATTTGGAAGACAAAC+GGG | 0.427863 | 7.3:+38141955 | MS.gene67342:CDS |
| AGTGGGAAATTCTTGTGAAC+AGG | 0.428908 | 7.3:+38140381 | MS.gene67342:CDS |
| GGACATCCATGATGTGAATC+AGG | 0.431320 | 7.3:+38130232 | MS.gene67342:CDS |
| GTGATTCTTGATGTGAATTC+GGG | 0.432826 | 7.3:+38128244 | MS.gene67342:CDS |
| CAGATGGTATTTGAACTTCT+GGG | 0.434972 | 7.3:-38137701 | None:intergenic |
| ACAGTTGAACTTTCTTTGGC+AGG | 0.439991 | 7.3:-38140655 | None:intergenic |
| TGCATGTAACTCCCAATAGA+TGG | 0.443906 | 7.3:-38128919 | None:intergenic |
| AATAACTGGGGCAGTAGATT+AGG | 0.445681 | 7.3:+38140946 | MS.gene67342:CDS |
| AACTGACATGCAACTGCATC+AGG | 0.445948 | 7.3:-38130076 | None:intergenic |
| CTTCCAAATCAACATTATGA+TGG | 0.448217 | 7.3:-38141946 | None:intergenic |
| GAGACTAAATGCTTGCAATC+AGG | 0.449174 | 7.3:-38136184 | None:intergenic |
| AATTTACCTGATTCACATCA+TGG | 0.450882 | 7.3:-38130238 | None:intergenic |
| TGCAAGATATACTGTACAAT+GGG | 0.450923 | 7.3:+38140225 | MS.gene67342:CDS |
| TCCTTGGACCTCTTGCTACC+AGG | 0.451154 | 7.3:-38140298 | None:intergenic |
| AAAAGAGGTATCATGATTGT+AGG | 0.453376 | 7.3:-38135946 | None:intergenic |
| GAATTGAAAGGCCATCTATT+GGG | 0.453500 | 7.3:+38128908 | MS.gene67342:CDS |
| CCAGTCCTCAGTACTAGTTT+GGG | 0.454158 | 7.3:+38128859 | MS.gene67342:CDS |
| AACAACTCTTGATGATAACT+TGG | 0.455191 | 7.3:+38139645 | MS.gene67342:CDS |
| TTTGAAGGTTGTATATATGA+AGG | 0.455359 | 7.3:-38133891 | None:intergenic |
| TGAGTTAAGACTTGTTCCTT+AGG | 0.455895 | 7.3:-38141890 | None:intergenic |
| TTGCTAGATTGGTTCAATGT+AGG | 0.456211 | 7.3:+38140917 | MS.gene67342:CDS |
| GCTGCATGCAAGAAAGCATT+TGG | 0.458799 | 7.3:+38140748 | MS.gene67342:CDS |
| TAATTTCAGCAACACTGATT+GGG | 0.458825 | 7.3:+38137871 | MS.gene67342:intron |
| GAGGGATGCGCAGGACTGCC+AGG | 0.459225 | 7.3:+38129249 | MS.gene67342:CDS |
| TGGCAACTCGGAGACTAATA+AGG | 0.462874 | 7.3:+38135922 | MS.gene67342:CDS |
| TGAAGCTAATCATATTTGTA+AGG | 0.464009 | 7.3:+38141853 | MS.gene67342:CDS |
| GGTTCTACTGTCTCAAGCAT+TGG | 0.464065 | 7.3:+38129134 | MS.gene67342:CDS |
| GGACATGCTGAAATTGTTAC+TGG | 0.465204 | 7.3:+38136148 | MS.gene67342:CDS |
| CTGATGGTACAATTAGGCTA+TGG | 0.468559 | 7.3:+38130682 | MS.gene67342:CDS |
| AACAAAATGGAGGGATGCGC+AGG | 0.469161 | 7.3:+38129240 | MS.gene67342:CDS |
| AAAGAGAGACAAAGCGGGAA+TGG | 0.471509 | 7.3:+38136975 | MS.gene67342:CDS |
| GATATATTTACCTTTGGGAC+TGG | 0.473155 | 7.3:+38129069 | MS.gene67342:CDS |
| TATTAGGCTCAGAGGAGATC+TGG | 0.475656 | 7.3:-38139489 | None:intergenic |
| TTTGATCTTATTGGCAGCGT+TGG | 0.477377 | 7.3:+38134446 | MS.gene67342:CDS |
| CTTTATAGGTTCTCCAAAAG+AGG | 0.477775 | 7.3:-38135961 | None:intergenic |
| ATGTTGATTTGGAAGACAAA+CGG | 0.478211 | 7.3:+38141954 | MS.gene67342:CDS |
| TCGCTTGCTGTTAGTTCAGA+TGG | 0.478979 | 7.3:+38133835 | MS.gene67342:CDS |
| GCAAAATTTATCGTAACTGC+TGG | 0.478987 | 7.3:+38129170 | MS.gene67342:CDS |
| TGCTGTCCAAGGTAAACATC+TGG | 0.484422 | 7.3:+38129034 | MS.gene67342:intron |
| TCTGGACACTTGAACCATCT+AGG | 0.487787 | 7.3:+38129210 | MS.gene67342:CDS |
| TGCTTATTTGGCTGGTTCTG+TGG | 0.488665 | 7.3:+38128219 | MS.gene67342:CDS |
| GACTGTTGTTACAGTTGGGC+AGG | 0.489837 | 7.3:+38135686 | MS.gene67342:CDS |
| TACTCAGTTGTAGTGCTGAT+AGG | 0.492069 | 7.3:+38134522 | MS.gene67342:CDS |
| TCTCTGGCATGCACTGCTAA+AGG | 0.495528 | 7.3:+38130624 | MS.gene67342:CDS |
| ATGTGTAATCTGATGTTTGA+AGG | 0.495657 | 7.3:-38133906 | None:intergenic |
| TTCATCTCCTCAACAGGTTG+AGG | 0.497535 | 7.3:+38142123 | MS.gene67342:CDS |
| GCAACTGCATCAGGCAGTGC+AGG | 0.505382 | 7.3:-38130067 | None:intergenic |
| TTTGCAACATGCTCTGCTGA+TGG | 0.508381 | 7.3:+38130666 | MS.gene67342:CDS |
| CAGTTGAACTTTCTTTGGCA+GGG | 0.510123 | 7.3:-38140654 | None:intergenic |
| GGGGCTAGACCGAGATCAAA+AGG | 0.513222 | 7.3:+38140687 | MS.gene67342:CDS |
| GGAGAAGAGGTTTCAAGTGA+TGG | 0.513703 | 7.3:+38140832 | MS.gene67342:CDS |
| TGCATCTATGACTTTATGAC+TGG | 0.514521 | 7.3:+38136103 | MS.gene67342:CDS |
| ACTGTACAATGGGATTATGC+AGG | 0.514624 | 7.3:+38140235 | MS.gene67342:CDS |
| ACAATAGCTTAAGATAATGC+TGG | 0.515065 | 7.3:-38142216 | None:intergenic |
| AATAGCCTTAATGAGGAAAT+GGG | 0.515892 | 7.3:+38139508 | MS.gene67342:CDS |
| AAGCCTATCAAATACACATA+AGG | 0.516576 | 7.3:+38139717 | MS.gene67342:CDS |
| GATGTAGTGATAGCAGATAA+TGG | 0.516870 | 7.3:+38135582 | MS.gene67342:CDS |
| CAGTGTAAACAGAGCGCCAA+TGG | 0.520139 | 7.3:-38137898 | None:intergenic |
| GATGGAAAGCATCTTGCTGC+TGG | 0.520199 | 7.3:+38133853 | MS.gene67342:CDS |
| CAAAAGGAAGGTGGCCGTGA+AGG | 0.522101 | 7.3:+38140703 | MS.gene67342:CDS |
| TCCGTTGTCTCTGAATTGAA+AGG | 0.522130 | 7.3:+38128896 | MS.gene67342:CDS |
| ACACTGATTGGGACAACCAT+TGG | 0.524439 | 7.3:+38137882 | MS.gene67342:CDS |
| TTTGCCACAACATCGTCAAA+GGG | 0.526069 | 7.3:+38135614 | MS.gene67342:CDS |
| AAACATGCATGATCCATCTC+TGG | 0.527106 | 7.3:+38130608 | MS.gene67342:CDS |
| AAAGCTTAATGTAAGAATCT+CGG | 0.527749 | 7.3:-38134239 | None:intergenic |
| ACTCAATGCTCTTCAAGGCC+TGG | 0.528529 | 7.3:+38137756 | MS.gene67342:CDS |
| GCTAATCATATTTGTAAGGA+GGG | 0.529728 | 7.3:+38141857 | MS.gene67342:CDS |
| GTCCAACTTACTTAAACTTG+AGG | 0.529739 | 7.3:-38137987 | None:intergenic |
| TGTGAGACTGTTGTTACAGT+TGG | 0.530462 | 7.3:+38135681 | MS.gene67342:CDS |
| GTTCATGGAAATTGAAGAAG+TGG | 0.533521 | 7.3:+38140363 | MS.gene67342:CDS |
| CTGTACAATGGGATTATGCA+GGG | 0.533764 | 7.3:+38140236 | MS.gene67342:CDS |
| AGTTCAACTGTCGATCAGCT+GGG | 0.533910 | 7.3:+38140667 | MS.gene67342:CDS |
| TGCACATTCCTCATGCATAT+GGG | 0.533978 | 7.3:+38130563 | MS.gene67342:CDS |
| CCTACATATTCCAGCGACAT+GGG | 0.534073 | 7.3:-38129953 | None:intergenic |
| TAACTGTTGAGAATTCTGTT+CGG | 0.537180 | 7.3:-38130044 | None:intergenic |
| GAGATGGTTGCCAAGGCCAC+AGG | 0.538135 | 7.3:+38136127 | MS.gene67342:CDS |
| GCGGTTACTTTCTTGCCTCA+GGG | 0.538919 | 7.3:+38134302 | MS.gene67342:CDS |
| CTGCTAAAGGTTGTTCTGGA+GGG | 0.540793 | 7.3:+38130637 | MS.gene67342:CDS |
| TCAGGGATTCTCAAAGGCAG+TGG | 0.541227 | 7.3:-38136864 | None:intergenic |
| GGATCCTAGCTGCACATATG+TGG | 0.541304 | 7.3:+38136054 | MS.gene67342:CDS |
| TGTATTCAGGTGGATGGTGA+TGG | 0.542188 | 7.3:+38136768 | MS.gene67342:intron |
| TCTATTGCTGCAGTAAGTGC+TGG | 0.542654 | 7.3:+38133760 | MS.gene67342:intron |
| TCGCTTTGTTGCGGCTGGAG+AGG | 0.544350 | 7.3:+38128342 | MS.gene67342:CDS |
| CTGGCTGCAATAATGTCTGC+AGG | 0.545426 | 7.3:+38137087 | MS.gene67342:CDS |
| CTGCAAGATATACTGTACAA+TGG | 0.545917 | 7.3:+38140224 | MS.gene67342:CDS |
| TTAGCAGTGCATGCCAGAGA+TGG | 0.546676 | 7.3:-38130621 | None:intergenic |
| GCTTATTGCAGGACAAGATA+GGG | 0.546829 | 7.3:+38139450 | MS.gene67342:intron |
| CTACCAGGCATATTTCTGAC+AGG | 0.548372 | 7.3:-38140283 | None:intergenic |
| TTATTATGTATTCAGGTGGA+TGG | 0.549113 | 7.3:+38136762 | MS.gene67342:intron |
| ACAAGACGGTCGCTTTGTTG+CGG | 0.549960 | 7.3:+38128333 | MS.gene67342:CDS |
| GACTGGAGAGATGGTTGCCA+AGG | 0.551104 | 7.3:+38136120 | MS.gene67342:CDS |
| AATGCTGGACAATAGAACTA+AGG | 0.551317 | 7.3:-38142201 | None:intergenic |
| CTATATGGGGAAATTGCAAA+AGG | 0.551972 | 7.3:+38134280 | MS.gene67342:CDS |
| TGCATCTGTTTCTCACCGAA+TGG | 0.552794 | 7.3:+38128938 | MS.gene67342:CDS |
| GAAATACTATATTTAAAAGA+CGG | 0.553250 | 7.3:-38137032 | None:intergenic |
| ACAATCTCCTCAACCTGTTG+AGG | 0.553910 | 7.3:-38142130 | None:intergenic |
| AAAAGGAAGGTGGCCGTGAA+GGG | 0.554186 | 7.3:+38140704 | MS.gene67342:CDS |
| TGATGGTACAATTAGGCTAT+GGG | 0.558349 | 7.3:+38130683 | MS.gene67342:CDS |
| CTTGCTGCTGGTGATTGCAA+TGG | 0.559138 | 7.3:+38133865 | MS.gene67342:CDS |
| CGATCATAGCCTCTACATCT+GGG | 0.559193 | 7.3:+38130211 | MS.gene67342:CDS |
| TTATTTGGCTGGTTCTGTGG+TGG | 0.561427 | 7.3:+38128222 | MS.gene67342:CDS |
| AAAACCTCATACTGTAACCA+AGG | 0.567220 | 7.3:+38127559 | MS.gene67342:CDS |
| AGGCAGTATATTATATTCAA+AGG | 0.569576 | 7.3:+38129973 | MS.gene67342:CDS |
| CATAAAGTCATAGATGCAGA+TGG | 0.572530 | 7.3:-38136098 | None:intergenic |
| GTATTTCAAGACTGCCCAGA+TGG | 0.572581 | 7.3:+38137048 | MS.gene67342:CDS |
| ATATAGGTCTTGGGTGGACA+AGG | 0.575310 | 7.3:-38134263 | None:intergenic |
| GATGATAATCGTAAACAAGC+TGG | 0.578955 | 7.3:+38129371 | MS.gene67342:CDS |
| TATTGCTAATGATGCAGTCC+TGG | 0.582189 | 7.3:-38129267 | None:intergenic |
| TGACTTTATGACTGGAGAGA+TGG | 0.583546 | 7.3:+38136111 | MS.gene67342:CDS |
| TGAGCCTAATAGCCTTAATG+AGG | 0.583962 | 7.3:+38139501 | MS.gene67342:CDS |
| GCCTACATATTCCAGCGACA+TGG | 0.583984 | 7.3:-38129954 | None:intergenic |
| CATGGATGTCCCAGATGTAG+AGG | 0.586640 | 7.3:-38130220 | None:intergenic |
| GACAAAGTTACACAACTCAA+AGG | 0.586655 | 7.3:-38128310 | None:intergenic |
| TGGGCACAAGCAAAAGTGAC+TGG | 0.586688 | 7.3:+38137068 | MS.gene67342:CDS |
| TACCTTTGGGACTGGCGGAG+TGG | 0.588423 | 7.3:+38129077 | MS.gene67342:CDS |
| ACCTTTCAGCATCATAGAGA+TGG | 0.588485 | 7.3:-38134342 | None:intergenic |
| AGTCCTGTCAGAAATATGCC+TGG | 0.588585 | 7.3:+38140280 | MS.gene67342:CDS |
| GATAAAGAAGCATGATCAGA+TGG | 0.592204 | 7.3:-38137717 | None:intergenic |
| AAGCGATCGAAATTCTTGAC+TGG | 0.593246 | 7.3:-38133818 | None:intergenic |
| GTGAGACTGTTGTTACAGTT+GGG | 0.594200 | 7.3:+38135682 | MS.gene67342:CDS |
| TACAAGCAGGAGGTTGATCA+GGG | 0.595793 | 7.3:-38136881 | None:intergenic |
| CAGACCACATATGTGCAGCT+AGG | 0.597483 | 7.3:-38136058 | None:intergenic |
| CGGTTACTTTCTTGCCTCAG+GGG | 0.598275 | 7.3:+38134303 | MS.gene67342:CDS |
| AGGAAAACTCAACAAAATGG+AGG | 0.599985 | 7.3:+38129230 | MS.gene67342:CDS |
| GACCACTCCGCCAGTCCCAA+AGG | 0.601511 | 7.3:-38129079 | None:intergenic |
| AGCTAATCATATTTGTAAGG+AGG | 0.601700 | 7.3:+38141856 | MS.gene67342:CDS |
| CTAATCATATTTGTAAGGAG+GGG | 0.603461 | 7.3:+38141858 | MS.gene67342:CDS |
| CCCAAACTAGTACTGAGGAC+TGG | 0.603756 | 7.3:-38128859 | None:intergenic |
| AGATGGTATTTGAACTTCTG+GGG | 0.604720 | 7.3:-38137700 | None:intergenic |
| ATGTAGGAAGAACAATAACT+GGG | 0.606071 | 7.3:+38140933 | MS.gene67342:CDS |
| TTCAATTTCCATGAACTGCG+AGG | 0.606188 | 7.3:-38140356 | None:intergenic |
| GATGATAGATGACTACAAGC+AGG | 0.606675 | 7.3:-38136894 | None:intergenic |
| GCCTTTCAATTCAGAGACAA+CGG | 0.607165 | 7.3:-38128897 | None:intergenic |
| CTACATATTCCAGCGACATG+GGG | 0.607315 | 7.3:-38129952 | None:intergenic |
| GAAGCCCTTTGACGATGTTG+TGG | 0.607596 | 7.3:-38135618 | None:intergenic |
| TTCCCCATATAGGTCTTGGG+TGG | 0.608409 | 7.3:-38134269 | None:intergenic |
| GGAAAACTCAACAAAATGGA+GGG | 0.609691 | 7.3:+38129231 | MS.gene67342:CDS |
| GGTTACTTTCTTGCCTCAGG+GGG | 0.610004 | 7.3:+38134304 | MS.gene67342:CDS |
| AACAATTTCAGCATGTCCTG+TGG | 0.610254 | 7.3:-38136143 | None:intergenic |
| GGAGGGGACTAACATGCCTA+AGG | 0.611432 | 7.3:+38141874 | MS.gene67342:CDS |
| AAACATCTGGTGTCTTGTGG+TGG | 0.615686 | 7.3:+38129047 | MS.gene67342:CDS |
| GCTTACTTGAAAGTACCTCC+AGG | 0.615749 | 7.3:-38137774 | None:intergenic |
| AGGCATTTGACATGGCAACT+CGG | 0.615976 | 7.3:+38135910 | MS.gene67342:CDS |
| TATTTCAAGACTGCCCAGAT+GGG | 0.615995 | 7.3:+38137049 | MS.gene67342:CDS |
| TATGTGCACAGATGGAGTCA+AGG | 0.617083 | 7.3:+38140179 | MS.gene67342:intron |
| CAAGTACATTCTGCATCTCG+GGG | 0.617491 | 7.3:-38137943 | None:intergenic |
| CGTCAAAGGGCTTCACAATG+TGG | 0.618074 | 7.3:+38135627 | MS.gene67342:CDS |
| TCATCTATCATCTTGCAAAG+AGG | 0.618600 | 7.3:+38136905 | MS.gene67342:CDS |
| GCCTGGTAGCAAGAGGTCCA+AGG | 0.620099 | 7.3:+38140297 | MS.gene67342:CDS |
| ATATTTACCTTTGGGACTGG+CGG | 0.620516 | 7.3:+38129072 | MS.gene67342:CDS |
| GGTAAACATCTGGTGTCTTG+TGG | 0.623328 | 7.3:+38129044 | MS.gene67342:intron |
| TGCAGAATGTACTTGAGACA+AGG | 0.627302 | 7.3:+38137951 | MS.gene67342:CDS |
| TGTTGAGTCTGGTCATCAAG+TGG | 0.628466 | 7.3:+38142096 | MS.gene67342:CDS |
| GGTTGATCAGGGATTCTCAA+AGG | 0.630243 | 7.3:-38136870 | None:intergenic |
| ACTGCTAAAGGTTGTTCTGG+AGG | 0.630682 | 7.3:+38130636 | MS.gene67342:CDS |
| TAAGGAAAGAGAGACAAAGC+GGG | 0.631051 | 7.3:+38136970 | MS.gene67342:CDS |
| GAAATATGCCTGGTAGCAAG+AGG | 0.634055 | 7.3:+38140290 | MS.gene67342:CDS |
| CCCATGTCGCTGGAATATGT+AGG | 0.635239 | 7.3:+38129953 | MS.gene67342:CDS |
| GAAGATAAAGGCATTTGACA+TGG | 0.638629 | 7.3:+38135902 | MS.gene67342:CDS |
| AGAATCCCAAACTAGTACTG+AGG | 0.639910 | 7.3:-38128864 | None:intergenic |
| TTCATGGAAATTGAAGAAGT+GGG | 0.640509 | 7.3:+38140364 | MS.gene67342:CDS |
| CTAGACCGAGATCAAAAGGA+AGG | 0.640558 | 7.3:+38140691 | MS.gene67342:CDS |
| TCACTACATCATGAAGCACC+AGG | 0.643802 | 7.3:-38135569 | None:intergenic |
| CTTGATATCCCATATGCATG+AGG | 0.644465 | 7.3:-38130571 | None:intergenic |
| TGTGTAACTTTGTCACAAGA+CGG | 0.651412 | 7.3:+38128319 | MS.gene67342:CDS |
| TGTTAGTGACACTTCATCAG+AGG | 0.654455 | 7.3:+38137112 | MS.gene67342:CDS |
| GTTCAACTGTCGATCAGCTG+GGG | 0.656637 | 7.3:+38140668 | MS.gene67342:CDS |
| GATAATCGTAAACAAGCTGG+TGG | 0.659905 | 7.3:+38129374 | MS.gene67342:CDS |
| CAATGCTCTTCAAGGCCTGG+AGG | 0.661175 | 7.3:+38137759 | MS.gene67342:CDS |
| TCCATCTCTATGATGCTGAA+AGG | 0.662432 | 7.3:+38134341 | MS.gene67342:CDS |
| GACCGAGATCAAAAGGAAGG+TGG | 0.663094 | 7.3:+38140694 | MS.gene67342:CDS |
| TCTGTTCGGGAAATACGGCA+AGG | 0.674735 | 7.3:-38130030 | None:intergenic |
| GCATTGCGAGATCAATCATG+AGG | 0.682215 | 7.3:+38136935 | MS.gene67342:CDS |
| CTGCGCTGTGAAGAAGAGAG+TGG | 0.682288 | 7.3:+38139673 | MS.gene67342:CDS |
| CTTCTGATACAATTAAGCGA+CGG | 0.682429 | 7.3:+38142032 | MS.gene67342:CDS |
| GTAATCTATCAGATGCAACA+AGG | 0.685089 | 7.3:-38128279 | None:intergenic |
| TACATATTCCAGCGACATGG+GGG | 0.689489 | 7.3:-38129951 | None:intergenic |
| ATTAAGGCTATTAGGCTCAG+AGG | 0.690475 | 7.3:-38139497 | None:intergenic |
| GATAGATGACTACAAGCAGG+AGG | 0.690545 | 7.3:-38136891 | None:intergenic |
| TATGGGGAAATTGCAAAAGG+CGG | 0.694477 | 7.3:+38134283 | MS.gene67342:CDS |
| GTCCACCCAAGACCTATATG+GGG | 0.697224 | 7.3:+38134267 | MS.gene67342:CDS |
| TGTACAATGGGATTATGCAG+GGG | 0.700074 | 7.3:+38140237 | MS.gene67342:CDS |
| TTAAGGAAAGAGAGACAAAG+CGG | 0.708657 | 7.3:+38136969 | MS.gene67342:CDS |
| ATGTGGAACTGTTTATGACA+TGG | 0.713027 | 7.3:+38135644 | MS.gene67342:CDS |
| AAGTACATTCTGCATCTCGG+GGG | 0.725744 | 7.3:-38137942 | None:intergenic |
| TGTAGGAAGAACAATAACTG+GGG | 0.750993 | 7.3:+38140934 | MS.gene67342:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 38127533 | 38142240 | 38127533 | ID=MS.gene67342 |
| chr7.3 | mRNA | 38127533 | 38142240 | 38127533 | ID=MS.gene67342.t1;Parent=MS.gene67342 |
| chr7.3 | exon | 38127533 | 38127580 | 38127533 | ID=MS.gene67342.t1.exon1;Parent=MS.gene67342.t1 |
| chr7.3 | CDS | 38127533 | 38127580 | 38127533 | ID=cds.MS.gene67342.t1;Parent=MS.gene67342.t1 |
| chr7.3 | exon | 38128142 | 38128363 | 38128142 | ID=MS.gene67342.t1.exon2;Parent=MS.gene67342.t1 |
| chr7.3 | CDS | 38128142 | 38128363 | 38128142 | ID=cds.MS.gene67342.t1;Parent=MS.gene67342.t1 |
| chr7.3 | exon | 38128851 | 38128959 | 38128851 | ID=MS.gene67342.t1.exon3;Parent=MS.gene67342.t1 |
| chr7.3 | CDS | 38128851 | 38128959 | 38128851 | ID=cds.MS.gene67342.t1;Parent=MS.gene67342.t1 |
| chr7.3 | exon | 38129045 | 38129428 | 38129045 | ID=MS.gene67342.t1.exon4;Parent=MS.gene67342.t1 |
| chr7.3 | CDS | 38129045 | 38129428 | 38129045 | ID=cds.MS.gene67342.t1;Parent=MS.gene67342.t1 |
| chr7.3 | exon | 38129507 | 38129562 | 38129507 | ID=MS.gene67342.t1.exon5;Parent=MS.gene67342.t1 |
| chr7.3 | CDS | 38129507 | 38129562 | 38129507 | ID=cds.MS.gene67342.t1;Parent=MS.gene67342.t1 |
| chr7.3 | exon | 38129872 | 38130118 | 38129872 | ID=MS.gene67342.t1.exon6;Parent=MS.gene67342.t1 |
| chr7.3 | CDS | 38129872 | 38130118 | 38129872 | ID=cds.MS.gene67342.t1;Parent=MS.gene67342.t1 |
| chr7.3 | exon | 38130198 | 38130253 | 38130198 | ID=MS.gene67342.t1.exon7;Parent=MS.gene67342.t1 |
| chr7.3 | CDS | 38130198 | 38130253 | 38130198 | ID=cds.MS.gene67342.t1;Parent=MS.gene67342.t1 |
| chr7.3 | exon | 38130540 | 38130780 | 38130540 | ID=MS.gene67342.t1.exon8;Parent=MS.gene67342.t1 |
| chr7.3 | CDS | 38130540 | 38130780 | 38130540 | ID=cds.MS.gene67342.t1;Parent=MS.gene67342.t1 |
| chr7.3 | exon | 38133773 | 38133936 | 38133773 | ID=MS.gene67342.t1.exon9;Parent=MS.gene67342.t1 |
| chr7.3 | CDS | 38133773 | 38133936 | 38133773 | ID=cds.MS.gene67342.t1;Parent=MS.gene67342.t1 |
| chr7.3 | exon | 38134226 | 38134362 | 38134226 | ID=MS.gene67342.t1.exon10;Parent=MS.gene67342.t1 |
| chr7.3 | CDS | 38134226 | 38134362 | 38134226 | ID=cds.MS.gene67342.t1;Parent=MS.gene67342.t1 |
| chr7.3 | exon | 38134442 | 38134543 | 38134442 | ID=MS.gene67342.t1.exon11;Parent=MS.gene67342.t1 |
| chr7.3 | CDS | 38134442 | 38134543 | 38134442 | ID=cds.MS.gene67342.t1;Parent=MS.gene67342.t1 |
| chr7.3 | exon | 38135566 | 38135707 | 38135566 | ID=MS.gene67342.t1.exon12;Parent=MS.gene67342.t1 |
| chr7.3 | CDS | 38135566 | 38135707 | 38135566 | ID=cds.MS.gene67342.t1;Parent=MS.gene67342.t1 |
| chr7.3 | exon | 38135897 | 38135983 | 38135897 | ID=MS.gene67342.t1.exon13;Parent=MS.gene67342.t1 |
| chr7.3 | CDS | 38135897 | 38135983 | 38135897 | ID=cds.MS.gene67342.t1;Parent=MS.gene67342.t1 |
| chr7.3 | exon | 38136046 | 38136207 | 38136046 | ID=MS.gene67342.t1.exon14;Parent=MS.gene67342.t1 |
| chr7.3 | CDS | 38136046 | 38136207 | 38136046 | ID=cds.MS.gene67342.t1;Parent=MS.gene67342.t1 |
| chr7.3 | exon | 38136777 | 38137133 | 38136777 | ID=MS.gene67342.t1.exon15;Parent=MS.gene67342.t1 |
| chr7.3 | CDS | 38136777 | 38137133 | 38136777 | ID=cds.MS.gene67342.t1;Parent=MS.gene67342.t1 |
| chr7.3 | exon | 38137684 | 38137790 | 38137684 | ID=MS.gene67342.t1.exon16;Parent=MS.gene67342.t1 |
| chr7.3 | CDS | 38137684 | 38137790 | 38137684 | ID=cds.MS.gene67342.t1;Parent=MS.gene67342.t1 |
| chr7.3 | exon | 38137880 | 38137998 | 38137880 | ID=MS.gene67342.t1.exon17;Parent=MS.gene67342.t1 |
| chr7.3 | CDS | 38137880 | 38137998 | 38137880 | ID=cds.MS.gene67342.t1;Parent=MS.gene67342.t1 |
| chr7.3 | exon | 38139461 | 38139738 | 38139461 | ID=MS.gene67342.t1.exon18;Parent=MS.gene67342.t1 |
| chr7.3 | CDS | 38139461 | 38139738 | 38139461 | ID=cds.MS.gene67342.t1;Parent=MS.gene67342.t1 |
| chr7.3 | exon | 38140190 | 38140402 | 38140190 | ID=MS.gene67342.t1.exon19;Parent=MS.gene67342.t1 |
| chr7.3 | CDS | 38140190 | 38140402 | 38140190 | ID=cds.MS.gene67342.t1;Parent=MS.gene67342.t1 |
| chr7.3 | exon | 38140652 | 38140982 | 38140652 | ID=MS.gene67342.t1.exon20;Parent=MS.gene67342.t1 |
| chr7.3 | CDS | 38140652 | 38140982 | 38140652 | ID=cds.MS.gene67342.t1;Parent=MS.gene67342.t1 |
| chr7.3 | exon | 38141813 | 38142240 | 38141813 | ID=MS.gene67342.t1.exon21;Parent=MS.gene67342.t1 |
| chr7.3 | CDS | 38141813 | 38142240 | 38141813 | ID=cds.MS.gene67342.t1;Parent=MS.gene67342.t1 |
| Gene Sequence |
| Protein sequence |
