Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67367.t1 | XP_003606608.2 | 95.1 | 933 | 39 | 1 | 1 | 933 | 1 | 926 | 0.00E+00 | 1640.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67367.t1 | F4JI44 | 39.3 | 968 | 459 | 18 | 24 | 927 | 9 | 911 | 1.9e-154 | 548.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67367.t1 | G7JTN6 | 95.1 | 933 | 39 | 1 | 1 | 933 | 1 | 926 | 0.0e+00 | 1640.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049190 | MS.gene67367 | 0.822315 | 2.53E-53 | -1.69E-46 |
| MS.gene05157 | MS.gene67367 | 0.811336 | 7.37E-51 | -1.69E-46 |
| MS.gene053144 | MS.gene67367 | 0.806507 | 7.95E-50 | -1.69E-46 |
| MS.gene054584 | MS.gene67367 | 0.820866 | 5.47E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67367.t1 | MTR_4g063030 | 95.927 | 933 | 31 | 1 | 1 | 933 | 1 | 926 | 0.0 | 1848 |
| MS.gene67367.t1 | MTR_2g096290 | 56.757 | 962 | 320 | 9 | 11 | 932 | 65 | 970 | 0.0 | 1043 |
| MS.gene67367.t1 | MTR_2g096290 | 61.141 | 754 | 257 | 6 | 11 | 734 | 4 | 751 | 0.0 | 900 |
| MS.gene67367.t1 | MTR_4g061370 | 52.800 | 125 | 28 | 1 | 98 | 222 | 830 | 923 | 1.82e-27 | 120 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene67367.t1 | AT4G03090 | 39.916 | 957 | 443 | 19 | 24 | 927 | 18 | 895 | 0.0 | 592 |
| MS.gene67367.t1 | AT4G03090 | 39.916 | 957 | 443 | 19 | 24 | 927 | 9 | 886 | 0.0 | 592 |
| MS.gene67367.t1 | AT4G03090 | 39.916 | 957 | 443 | 19 | 24 | 927 | 9 | 886 | 0.0 | 592 |
| MS.gene67367.t1 | AT4G03090 | 39.322 | 974 | 450 | 19 | 24 | 927 | 9 | 911 | 0.0 | 586 |
| MS.gene67367.t1 | AT4G03090 | 43.094 | 724 | 368 | 14 | 24 | 734 | 9 | 701 | 6.26e-167 | 505 |
Find 177 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCGATAGGTTGACATATTTA+TGG | 0.145526 | 4.1:-37381968 | MS.gene67367:intron |
| GGTCAAGTTACCTTAGAATT+TGG | 0.180899 | 4.1:+37378047 | None:intergenic |
| ACTCACAATGGATAGTATTT+TGG | 0.181485 | 4.1:+37380845 | None:intergenic |
| TGCTTCAGTTGGATGGATTT+TGG | 0.186617 | 4.1:-37378599 | MS.gene67367:CDS |
| GTGCCAGCAGAAATTGTTTA+AGG | 0.186702 | 4.1:-37381785 | MS.gene67367:CDS |
| CAAACACTATTTACTTCTTC+TGG | 0.187242 | 4.1:-37374249 | MS.gene67367:CDS |
| CGCCGTTATCTGCATGATTA+AGG | 0.207862 | 4.1:+37373499 | None:intergenic |
| CTGCTGACCTGATCAAATTT+AGG | 0.234197 | 4.1:+37382954 | None:intergenic |
| AGCAGCTTACATCTATTAAC+AGG | 0.261606 | 4.1:-37382409 | MS.gene67367:CDS |
| ATATTTATGGATGCAGCTTT+TGG | 0.268382 | 4.1:-37381955 | MS.gene67367:CDS |
| GACTTGTTGAAGTCTGCTTT+TGG | 0.276489 | 4.1:-37379309 | MS.gene67367:CDS |
| CTGCTTCTTATGCACATAAT+AGG | 0.284010 | 4.1:-37378504 | MS.gene67367:CDS |
| TTGCTAACAGTAGCAGCTTT+AGG | 0.287339 | 4.1:+37378215 | None:intergenic |
| GAAAGAGCTTGGAGGAATTA+GGG | 0.287696 | 4.1:-37372615 | MS.gene67367:CDS |
| AACTATAATGAATGATAAAA+TGG | 0.288503 | 4.1:-37373262 | MS.gene67367:CDS |
| GGAAAGAGCTTGGAGGAATT+AGG | 0.291098 | 4.1:-37372616 | MS.gene67367:CDS |
| TCAACTCCAGATAAGCAAAA+AGG | 0.295843 | 4.1:-37372870 | MS.gene67367:CDS |
| CCTTTCCCATCTGAACTTAC+TGG | 0.302192 | 4.1:-37372541 | MS.gene67367:CDS |
| GGAGCGCCTGCTCAATAATA+AGG | 0.302931 | 4.1:-37381764 | MS.gene67367:intron |
| GGCTCATTTCGCTGCATATC+TGG | 0.304092 | 4.1:+37373327 | None:intergenic |
| CTCTGTTTCTGAGAGATTAG+AGG | 0.309355 | 4.1:+37378651 | None:intergenic |
| TCTTGCTCACCAAGATTGTT+AGG | 0.321508 | 4.1:+37372822 | None:intergenic |
| ATCACCACAAAGTTTAGATT+TGG | 0.321677 | 4.1:-37380475 | MS.gene67367:CDS |
| CTATTTACTTCTTCTGGATC+TGG | 0.327644 | 4.1:-37374243 | MS.gene67367:CDS |
| ATCTTGGCGACGACTTAAAT+AGG | 0.332010 | 4.1:-37373650 | MS.gene67367:CDS |
| GGTCAGTTCGCGTTGTTGTT+AGG | 0.334242 | 4.1:-37381933 | MS.gene67367:CDS |
| GATCCATTTGCAGGCATTCC+AGG | 0.356203 | 4.1:+37378279 | None:intergenic |
| GCTGCATTTCGCTGCATCTC+TGG | 0.361941 | 4.1:+37373207 | None:intergenic |
| TAAGCTAGCCCGCACATCTA+AGG | 0.365530 | 4.1:-37372898 | MS.gene67367:CDS |
| GGAATTAGGGGTCTATGTTA+TGG | 0.366014 | 4.1:-37372602 | MS.gene67367:CDS |
| GAGTCGGAGGACACTCTTAC+TGG | 0.372462 | 4.1:+37372846 | None:intergenic |
| TTGTAGGAGGCTCAGAGTAT+AGG | 0.374937 | 4.1:-37373804 | MS.gene67367:intron |
| TTAATCTGTAAAAGCCCAAT+TGG | 0.379979 | 4.1:+37379246 | None:intergenic |
| ACCATCTCGCAGCGGTGAAC+AGG | 0.381317 | 4.1:-37383435 | MS.gene67367:CDS |
| TGATAAAATGGTGGAATTGA+TGG | 0.382793 | 4.1:-37373250 | MS.gene67367:CDS |
| TGATAAACTGGTGGAATTGA+TGG | 0.383375 | 4.1:-37373370 | MS.gene67367:CDS |
| GCAGAGGCTGAAAGAAAGTT+AGG | 0.383489 | 4.1:-37372508 | MS.gene67367:CDS |
| GTAGAGAAGCCTCACATTGC+TGG | 0.389328 | 4.1:+37381824 | None:intergenic |
| TTAGCCAAATCTAAACTTTG+TGG | 0.394390 | 4.1:+37380471 | None:intergenic |
| TGTAGGAGGCTCAGAGTATA+GGG | 0.395624 | 4.1:-37373803 | MS.gene67367:intron |
| GCTTGGAAATGCAGAATTAT+CGG | 0.398959 | 4.1:+37373707 | None:intergenic |
| TGGTAAAGGAAAGGTACTTC+AGG | 0.401508 | 4.1:-37372656 | MS.gene67367:CDS |
| AACTGTGGTAAATGATAAAC+TGG | 0.402097 | 4.1:-37373382 | MS.gene67367:CDS |
| TTTGGATAATAGTTCATCAA+TGG | 0.406126 | 4.1:-37378581 | MS.gene67367:CDS |
| ATTTAGATAGATCCATTTGC+AGG | 0.409607 | 4.1:+37378270 | None:intergenic |
| GCAAAACATTGGCAATATCT+TGG | 0.414068 | 4.1:+37382368 | None:intergenic |
| AGGAGGATGTCCAAATTCTA+AGG | 0.414848 | 4.1:-37378057 | MS.gene67367:intron |
| AATCTTCATTGTCATGTTCC+CGG | 0.420015 | 4.1:-37378454 | MS.gene67367:CDS |
| GCCTGTTCACCGCTGCGAGA+TGG | 0.425180 | 4.1:+37383434 | None:intergenic |
| AGAGTTGAAAACACAAATCT+TGG | 0.425827 | 4.1:-37373666 | MS.gene67367:CDS |
| ATCTATCTAAATTGCTGCCT+GGG | 0.438721 | 4.1:-37378259 | MS.gene67367:CDS |
| CGAACCTGCTGAACTTGATA+AGG | 0.441242 | 4.1:-37373754 | MS.gene67367:CDS |
| AAGACTGCAGTACAAGAATT+CGG | 0.442911 | 4.1:+37372458 | None:intergenic |
| TATTTACTTCTTCTGGATCT+GGG | 0.444435 | 4.1:-37374242 | MS.gene67367:CDS |
| GCAGGTTCGTTTACTTGTAA+AGG | 0.444577 | 4.1:+37373768 | None:intergenic |
| TGATAAGGTTGGTAACTTGA+AGG | 0.446954 | 4.1:-37373739 | MS.gene67367:CDS |
| ATGCAGCGTCACTTCAATCA+TGG | 0.448196 | 4.1:-37373191 | MS.gene67367:CDS |
| TATGATTTATTTGCTTCAGT+TGG | 0.450489 | 4.1:-37378610 | MS.gene67367:CDS |
| GGAAAACCTTATTATTGAGC+AGG | 0.450872 | 4.1:+37381758 | None:intergenic |
| GATCTATCTAAATTGCTGCC+TGG | 0.452205 | 4.1:-37378260 | MS.gene67367:CDS |
| GGACCAACCTTCACAACGGC+CGG | 0.452235 | 4.1:+37378435 | None:intergenic |
| ATTTATTTGCTTCAGTTGGA+TGG | 0.453068 | 4.1:-37378606 | MS.gene67367:CDS |
| TCGGCTTCCTAAATTTGATC+AGG | 0.458179 | 4.1:-37382961 | MS.gene67367:intron |
| CATCCTTTAGTAATCTATAA+AGG | 0.458489 | 4.1:+37383246 | None:intergenic |
| ACTGATAGAAGATACCCAAT+TGG | 0.461889 | 4.1:-37379261 | MS.gene67367:CDS |
| GTATTATGTTGACCTATGCT+TGG | 0.463649 | 4.1:+37373690 | None:intergenic |
| TATGTGTACACAGATTGATA+TGG | 0.471142 | 4.1:-37383111 | MS.gene67367:intron |
| TCCGACTCACCTAACAATCT+TGG | 0.475188 | 4.1:-37372831 | MS.gene67367:intron |
| CAACATCAGGTAGGAGGTAA+AGG | 0.475878 | 4.1:-37373627 | MS.gene67367:CDS |
| ATTGATGGAGAGGGCACTCT+TGG | 0.478781 | 4.1:-37373235 | MS.gene67367:CDS |
| GTTCCTGGAATGCCTGCAAA+TGG | 0.480485 | 4.1:-37378282 | MS.gene67367:CDS |
| GGCTAAATCTGTTGCAGTGG+AGG | 0.483726 | 4.1:-37380454 | MS.gene67367:intron |
| GGACCTTTATAGATTACTAA+AGG | 0.485737 | 4.1:-37383249 | MS.gene67367:CDS |
| AGACGGAGGATTTGATTCCA+TGG | 0.486827 | 4.1:+37381870 | None:intergenic |
| TATAGATTACTAAAGGATGC+TGG | 0.490100 | 4.1:-37383242 | MS.gene67367:CDS |
| CATGTTCCCGGCCGTTGTGA+AGG | 0.491045 | 4.1:-37378442 | MS.gene67367:intron |
| GGATCGTCGCTGGAATTTCA+AGG | 0.491100 | 4.1:-37380875 | MS.gene67367:CDS |
| GAAAGCTGAAACAAGTGGTT+CGG | 0.493635 | 4.1:-37373550 | MS.gene67367:CDS |
| TGAAACTCCGGACGATGAAA+AGG | 0.493811 | 4.1:-37373436 | MS.gene67367:CDS |
| ATTGATGGAGAGCGCACTCT+TGG | 0.494731 | 4.1:-37373355 | MS.gene67367:CDS |
| GTCCTTAATCATGCAGATAA+CGG | 0.496263 | 4.1:-37373501 | MS.gene67367:CDS |
| GAAGTACCAGTAAGTTCAGA+TGG | 0.500529 | 4.1:+37372535 | None:intergenic |
| TCGGATACTAGTTCTGCAAA+AGG | 0.501799 | 4.1:-37373531 | MS.gene67367:CDS |
| CCAACCTTATCAAGTTCAGC+AGG | 0.503594 | 4.1:+37373750 | None:intergenic |
| TCAGAATCAATGAAGCGTCT+TGG | 0.503745 | 4.1:-37373474 | MS.gene67367:CDS |
| CTACGAGAGCAGAATGCAAA+AGG | 0.503980 | 4.1:+37382434 | None:intergenic |
| ATATGCAATTCCAAGACTGT+TGG | 0.505910 | 4.1:+37378547 | None:intergenic |
| CTTTATGTGATTTATCCCCT+CGG | 0.509702 | 4.1:-37382980 | MS.gene67367:CDS |
| CAGGTGAATGGCAAATGGTA+TGG | 0.510294 | 4.1:-37372637 | MS.gene67367:CDS |
| CGTGGAGAGGAGATTGGTAA+AGG | 0.510370 | 4.1:-37372670 | MS.gene67367:CDS |
| AATTGCACAAACTCAACTCT+CGG | 0.511635 | 4.1:-37383271 | MS.gene67367:CDS |
| TCTACAGAATCCAACAGTCT+TGG | 0.513944 | 4.1:-37378557 | MS.gene67367:CDS |
| GGAAAGGTACTTCAGGTGAA+TGG | 0.514463 | 4.1:-37372649 | MS.gene67367:CDS |
| TGCAAGAATGATGATTGCTA+AGG | 0.515652 | 4.1:-37383462 | None:intergenic |
| GCTAGTAACACTGTGTTAAG+AGG | 0.516616 | 4.1:-37373600 | MS.gene67367:CDS |
| TAATCTGTAAAAGCCCAATT+GGG | 0.517669 | 4.1:+37379247 | None:intergenic |
| TACTTCAGGTGAATGGCAAA+TGG | 0.520843 | 4.1:-37372642 | MS.gene67367:CDS |
| ATTCCAGCGACGATCCTAGT+TGG | 0.521621 | 4.1:+37380882 | None:intergenic |
| CGACTTAAATAGGCAACATC+AGG | 0.524206 | 4.1:-37373640 | MS.gene67367:CDS |
| CATTTCGTTTGTCGATCAAG+TGG | 0.525882 | 4.1:-37380502 | MS.gene67367:CDS |
| GAAGTCGTTCGTTGCAATGT+TGG | 0.530801 | 4.1:-37372718 | MS.gene67367:CDS |
| CTGATAGAAGATACCCAATT+GGG | 0.530878 | 4.1:-37379260 | MS.gene67367:CDS |
| ACCAAGATTGTTAGGTGAGT+CGG | 0.533268 | 4.1:+37372830 | None:intergenic |
| GCTCCTTAAACAATTTCTGC+TGG | 0.534039 | 4.1:+37381782 | None:intergenic |
| TATTCTTAGTACCTACAGAC+AGG | 0.535882 | 4.1:-37382581 | MS.gene67367:intron |
| TGAACTATCCTTAGATGTGC+GGG | 0.536055 | 4.1:+37372890 | None:intergenic |
| TTACAGGAACTATGTGGAAA+GGG | 0.543631 | 4.1:-37380960 | MS.gene67367:intron |
| GTTACAGGAACTATGTGGAA+AGG | 0.544841 | 4.1:-37380961 | MS.gene67367:intron |
| ATGAGCTATATGCTGACAAA+GGG | 0.546731 | 4.1:-37372573 | MS.gene67367:CDS |
| AGGTGCCATGAGAGTGTTGT+GGG | 0.547979 | 4.1:-37372488 | MS.gene67367:CDS |
| TCAGTAGTAGTCGGATACCC+AGG | 0.548361 | 4.1:+37379279 | None:intergenic |
| ACTTCAAGATAGATTGAGCA+AGG | 0.548573 | 4.1:+37380925 | None:intergenic |
| AAGGTTGGTAACTTGAAGGA+AGG | 0.549942 | 4.1:-37373735 | MS.gene67367:CDS |
| AAATGAGCCAGAGGATGAAA+AGG | 0.556321 | 4.1:-37373313 | MS.gene67367:CDS |
| CAAATGGTATGGAAAGAGCT+TGG | 0.556811 | 4.1:-37372626 | MS.gene67367:CDS |
| ATTTCTGCTGGCACAATGCG+TGG | 0.558642 | 4.1:+37381794 | None:intergenic |
| TACTGGTACTTCATTTGCAG+AGG | 0.561660 | 4.1:-37372524 | MS.gene67367:CDS |
| TTTCCAACTAGGATCGTCGC+TGG | 0.566296 | 4.1:-37380885 | MS.gene67367:CDS |
| ATTTACTTCTTCTGGATCTG+GGG | 0.567838 | 4.1:-37374241 | MS.gene67367:CDS |
| TGCAGCGTCACTTCAATCAT+GGG | 0.569446 | 4.1:-37373190 | MS.gene67367:CDS |
| TCATGCAGAATCTTTGATGC+CGG | 0.571392 | 4.1:-37378092 | MS.gene67367:CDS |
| CCTGCTGAACTTGATAAGGT+TGG | 0.575447 | 4.1:-37373750 | MS.gene67367:CDS |
| GACCAACCTTCACAACGGCC+GGG | 0.578200 | 4.1:+37378436 | None:intergenic |
| TTTACTTCTTCTGGATCTGG+GGG | 0.579211 | 4.1:-37374240 | MS.gene67367:CDS |
| AGAGGAGATTGGTAAAGGAA+AGG | 0.579728 | 4.1:-37372665 | MS.gene67367:CDS |
| AATTCTGCATTTCCAAGCAT+AGG | 0.580960 | 4.1:-37373702 | MS.gene67367:CDS |
| CGAATCCCACAACACTCTCA+TGG | 0.583467 | 4.1:+37372483 | None:intergenic |
| ATTGCACAAACTCAACTCTC+GGG | 0.583532 | 4.1:-37383270 | MS.gene67367:CDS |
| TTTGGCTAAATCTGTTGCAG+TGG | 0.585669 | 4.1:-37380457 | MS.gene67367:CDS |
| TATAATGAATGATAAAATGG+TGG | 0.586134 | 4.1:-37373259 | MS.gene67367:CDS |
| TATGAGCTATATGCTGACAA+AGG | 0.593936 | 4.1:-37372574 | MS.gene67367:CDS |
| GATTGTAGTTGATGAAACTC+CGG | 0.594244 | 4.1:-37373448 | MS.gene67367:CDS |
| AAATAAACTACTTGTTCAGA+CGG | 0.595027 | 4.1:+37381853 | None:intergenic |
| CGGGTGTGCAAGCAAAACAT+TGG | 0.597604 | 4.1:+37382357 | None:intergenic |
| CAATGTTGGTCAAAGTGCTG+TGG | 0.598962 | 4.1:-37372704 | MS.gene67367:CDS |
| TCAGGTAGGAGGTAAAGGTA+TGG | 0.607656 | 4.1:-37373622 | MS.gene67367:CDS |
| AAATGGTGGAATTGATGGAG+AGG | 0.608160 | 4.1:-37373245 | MS.gene67367:CDS |
| TGATCAAATTTAGGAAGCCG+AGG | 0.610227 | 4.1:+37382963 | None:intergenic |
| CCAGTAAGTTCAGATGGGAA+AGG | 0.612865 | 4.1:+37372541 | None:intergenic |
| AATGTGCGTGGAGAGGAGAT+TGG | 0.613773 | 4.1:-37372676 | MS.gene67367:CDS |
| ATGGTATGGAAAGAGCTTGG+AGG | 0.613988 | 4.1:-37372623 | MS.gene67367:CDS |
| TTTACTCTGCAGAAAGTGAG+AGG | 0.616492 | 4.1:-37378322 | MS.gene67367:intron |
| ACTGAAGAAAACCTGTCTGT+AGG | 0.616578 | 4.1:+37382570 | None:intergenic |
| CAGTAGTAGTCGGATACCCA+GGG | 0.616928 | 4.1:+37379280 | None:intergenic |
| GATCAAATTTAGGAAGCCGA+GGG | 0.617132 | 4.1:+37382964 | None:intergenic |
| AATAGGCAACATCAGGTAGG+AGG | 0.620408 | 4.1:-37373633 | MS.gene67367:CDS |
| TTGAACTATCCTTAGATGTG+CGG | 0.622636 | 4.1:+37372889 | None:intergenic |
| ATCTAAACTTTGTGGTGATG+TGG | 0.622983 | 4.1:+37380479 | None:intergenic |
| TTGCAACGAACGACTTCTAG+AGG | 0.624222 | 4.1:+37372724 | None:intergenic |
| TATCTTCTATCAGTAGTAGT+CGG | 0.624223 | 4.1:+37379270 | None:intergenic |
| CTCTAATCTCTCAGAAACAG+AGG | 0.624773 | 4.1:-37378650 | MS.gene67367:CDS |
| AAGTACCAGTAAGTTCAGAT+GGG | 0.624982 | 4.1:+37372536 | None:intergenic |
| GAATCCTAGTCACATTCAAG+TGG | 0.626822 | 4.1:+37383402 | None:intergenic |
| TTGCTGCAAAGATATTTCCA+TGG | 0.631351 | 4.1:-37381887 | MS.gene67367:CDS |
| AGTGTTGTAGTGAGATGCAA+TGG | 0.635733 | 4.1:+37383068 | None:intergenic |
| AATGGTGGAATTGATGGAGA+GGG | 0.640387 | 4.1:-37373244 | MS.gene67367:CDS |
| AAAGAGCTTGGAGGAATTAG+GGG | 0.650481 | 4.1:-37372614 | MS.gene67367:CDS |
| TAAACTACTTGTTCAGACGG+AGG | 0.650699 | 4.1:+37381856 | None:intergenic |
| TTATGTGCATAAGAAGCAGA+AGG | 0.651924 | 4.1:+37378508 | None:intergenic |
| GCTCAGAAAGCTGAAACAAG+TGG | 0.656109 | 4.1:-37373555 | MS.gene67367:CDS |
| TGTGGTAAATGATAAACTGG+TGG | 0.658273 | 4.1:-37373379 | MS.gene67367:CDS |
| GCAGCTTACATCTATTAACA+GGG | 0.658572 | 4.1:-37382408 | MS.gene67367:CDS |
| GAGATTAGAGGAACACCAAG+AGG | 0.666437 | 4.1:+37378663 | None:intergenic |
| TAATCTCTCAGAAACAGAGG+AGG | 0.671600 | 4.1:-37378647 | MS.gene67367:CDS |
| TTAAATAGGCAACATCAGGT+AGG | 0.680186 | 4.1:-37373636 | MS.gene67367:CDS |
| GCTGTGGTTGTAAATGTGCG+TGG | 0.686202 | 4.1:-37372688 | MS.gene67367:CDS |
| AAGATTGTTAGGTGAGTCGG+AGG | 0.686542 | 4.1:+37372833 | None:intergenic |
| AGGAGTAAGAGATACAGACA+AGG | 0.687236 | 4.1:-37373580 | MS.gene67367:CDS |
| CAAGGGACCAACCTTCACAA+CGG | 0.688319 | 4.1:+37378431 | None:intergenic |
| TCAGATGCGAAAGAAAACCC+AGG | 0.693289 | 4.1:+37378242 | None:intergenic |
| AATAATATCAGTCTCCCATG+CGG | 0.695522 | 4.1:-37378695 | MS.gene67367:CDS |
| TATGCAGCGAAATGAGCCAG+AGG | 0.717046 | 4.1:-37373322 | MS.gene67367:CDS |
| GGTTGTAAATGTGCGTGGAG+AGG | 0.717179 | 4.1:-37372683 | MS.gene67367:CDS |
| GTGTTCAAACACGTGTTACG+TGG | 0.722374 | 4.1:-37383020 | MS.gene67367:CDS |
| ATCAAATTTAGGAAGCCGAG+GGG | 0.724949 | 4.1:+37382965 | None:intergenic |
| TAGGTGCCATGAGAGTGTTG+TGG | 0.728876 | 4.1:-37372489 | MS.gene67367:CDS |
| AAGGAAGAACCATCTCGCAG+CGG | 0.739935 | 4.1:-37383443 | MS.gene67367:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 37372453 | 37383477 | 37372453 | ID=MS.gene67367 |
| chr4.1 | mRNA | 37372453 | 37383477 | 37372453 | ID=MS.gene67367.t1;Parent=MS.gene67367 |
| chr4.1 | exon | 37383415 | 37383477 | 37383415 | ID=MS.gene67367.t1.exon1;Parent=MS.gene67367.t1 |
| chr4.1 | CDS | 37383415 | 37383477 | 37383415 | ID=cds.MS.gene67367.t1;Parent=MS.gene67367.t1 |
| chr4.1 | exon | 37383196 | 37383321 | 37383196 | ID=MS.gene67367.t1.exon2;Parent=MS.gene67367.t1 |
| chr4.1 | CDS | 37383196 | 37383321 | 37383196 | ID=cds.MS.gene67367.t1;Parent=MS.gene67367.t1 |
| chr4.1 | exon | 37382962 | 37383120 | 37382962 | ID=MS.gene67367.t1.exon3;Parent=MS.gene67367.t1 |
| chr4.1 | CDS | 37382962 | 37383120 | 37382962 | ID=cds.MS.gene67367.t1;Parent=MS.gene67367.t1 |
| chr4.1 | exon | 37382582 | 37382665 | 37382582 | ID=MS.gene67367.t1.exon4;Parent=MS.gene67367.t1 |
| chr4.1 | CDS | 37382582 | 37382665 | 37382582 | ID=cds.MS.gene67367.t1;Parent=MS.gene67367.t1 |
| chr4.1 | exon | 37382354 | 37382482 | 37382354 | ID=MS.gene67367.t1.exon5;Parent=MS.gene67367.t1 |
| chr4.1 | CDS | 37382354 | 37382482 | 37382354 | ID=cds.MS.gene67367.t1;Parent=MS.gene67367.t1 |
| chr4.1 | exon | 37381765 | 37381983 | 37381765 | ID=MS.gene67367.t1.exon6;Parent=MS.gene67367.t1 |
| chr4.1 | CDS | 37381765 | 37381983 | 37381765 | ID=cds.MS.gene67367.t1;Parent=MS.gene67367.t1 |
| chr4.1 | exon | 37380851 | 37380976 | 37380851 | ID=MS.gene67367.t1.exon7;Parent=MS.gene67367.t1 |
| chr4.1 | CDS | 37380851 | 37380976 | 37380851 | ID=cds.MS.gene67367.t1;Parent=MS.gene67367.t1 |
| chr4.1 | exon | 37380455 | 37380550 | 37380455 | ID=MS.gene67367.t1.exon8;Parent=MS.gene67367.t1 |
| chr4.1 | CDS | 37380455 | 37380550 | 37380455 | ID=cds.MS.gene67367.t1;Parent=MS.gene67367.t1 |
| chr4.1 | exon | 37379179 | 37379337 | 37379179 | ID=MS.gene67367.t1.exon9;Parent=MS.gene67367.t1 |
| chr4.1 | CDS | 37379179 | 37379337 | 37379179 | ID=cds.MS.gene67367.t1;Parent=MS.gene67367.t1 |
| chr4.1 | exon | 37378443 | 37378734 | 37378443 | ID=MS.gene67367.t1.exon10;Parent=MS.gene67367.t1 |
| chr4.1 | CDS | 37378443 | 37378734 | 37378443 | ID=cds.MS.gene67367.t1;Parent=MS.gene67367.t1 |
| chr4.1 | exon | 37378207 | 37378332 | 37378207 | ID=MS.gene67367.t1.exon11;Parent=MS.gene67367.t1 |
| chr4.1 | CDS | 37378207 | 37378332 | 37378207 | ID=cds.MS.gene67367.t1;Parent=MS.gene67367.t1 |
| chr4.1 | exon | 37378058 | 37378127 | 37378058 | ID=MS.gene67367.t1.exon12;Parent=MS.gene67367.t1 |
| chr4.1 | CDS | 37378058 | 37378127 | 37378058 | ID=cds.MS.gene67367.t1;Parent=MS.gene67367.t1 |
| chr4.1 | exon | 37374227 | 37374290 | 37374227 | ID=MS.gene67367.t1.exon13;Parent=MS.gene67367.t1 |
| chr4.1 | CDS | 37374227 | 37374290 | 37374227 | ID=cds.MS.gene67367.t1;Parent=MS.gene67367.t1 |
| chr4.1 | exon | 37373170 | 37373820 | 37373170 | ID=MS.gene67367.t1.exon14;Parent=MS.gene67367.t1 |
| chr4.1 | CDS | 37373170 | 37373820 | 37373170 | ID=cds.MS.gene67367.t1;Parent=MS.gene67367.t1 |
| chr4.1 | exon | 37373057 | 37373091 | 37373057 | ID=MS.gene67367.t1.exon15;Parent=MS.gene67367.t1 |
| chr4.1 | CDS | 37373057 | 37373091 | 37373057 | ID=cds.MS.gene67367.t1;Parent=MS.gene67367.t1 |
| chr4.1 | exon | 37372832 | 37372938 | 37372832 | ID=MS.gene67367.t1.exon16;Parent=MS.gene67367.t1 |
| chr4.1 | CDS | 37372832 | 37372938 | 37372832 | ID=cds.MS.gene67367.t1;Parent=MS.gene67367.t1 |
| chr4.1 | exon | 37372453 | 37372748 | 37372453 | ID=MS.gene67367.t1.exon17;Parent=MS.gene67367.t1 |
| chr4.1 | CDS | 37372453 | 37372748 | 37372453 | ID=cds.MS.gene67367.t1;Parent=MS.gene67367.t1 |
| Gene Sequence |
| Protein sequence |
