AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene67439

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene67439.t1 MTR_3g071620 98.812 589 7 0 1 589 1 589 0.0 1197
MS.gene67439.t1 MTR_2g055850 36.989 465 265 8 5 464 82 523 8.66e-86 278
MS.gene67439.t1 MTR_4g112340 36.281 441 256 10 28 463 109 529 3.42e-80 263
MS.gene67439.t1 MTR_5g092560 35.920 451 260 8 33 478 93 519 1.60e-72 247
MS.gene67439.t1 MTR_4g068990 36.059 477 270 11 13 478 67 519 5.88e-71 243
MS.gene67439.t1 MTR_4g059460 29.121 546 304 13 7 472 37 579 4.37e-61 213
MS.gene67439.t1 MTR_2g043360 29.730 518 284 11 34 472 60 576 6.22e-61 213
MS.gene67439.t1 MTR_6g082080 35.476 389 222 8 7 394 5 365 1.26e-60 207
MS.gene67439.t1 MTR_7g056830 35.476 389 222 8 7 394 5 365 3.01e-60 207
MS.gene67439.t1 MTR_4g112320 33.060 366 221 9 105 465 3 349 1.75e-59 204
MS.gene67439.t1 MTR_2g041140 33.820 411 244 8 6 411 131 518 2.35e-57 205
MS.gene67439.t1 MTR_3g049990 34.328 402 226 9 6 398 142 514 7.13e-57 204
MS.gene67439.t1 MTR_4g079320 32.494 397 234 9 22 409 25 396 1.46e-55 201
MS.gene67439.t1 MTR_8g027780 30.357 392 246 9 10 392 102 475 8.90e-54 192
MS.gene67439.t1 MTR_5g090120 32.031 384 230 9 4 382 69 426 1.67e-53 192
MS.gene67439.t1 MTR_3g467550 32.512 406 241 8 2 396 71 454 2.14e-53 191
MS.gene67439.t1 MTR_3g449250 31.967 366 224 7 19 382 93 435 3.37e-53 191
MS.gene67439.t1 MTR_4g134170 33.176 425 231 13 22 424 293 686 3.66e-53 193
MS.gene67439.t1 MTR_3g449250 32.609 368 219 8 19 382 93 435 8.45e-53 190
MS.gene67439.t1 MTR_8g097000 30.543 442 285 9 10 445 284 709 8.57e-53 193
MS.gene67439.t1 MTR_2g032630 32.212 416 240 12 26 431 506 889 9.90e-53 195
MS.gene67439.t1 MTR_6g005320 33.420 383 211 9 22 384 255 613 1.67e-52 191
MS.gene67439.t1 MTR_8g027775 28.442 443 292 10 10 446 98 521 1.84e-52 189
MS.gene67439.t1 MTR_1g054630 35.635 362 195 12 39 384 177 516 2.12e-52 189
MS.gene67439.t1 MTR_3g083690 35.537 363 195 11 39 384 168 508 3.19e-52 189
MS.gene67439.t1 MTR_1g095810 32.419 401 231 13 15 404 146 517 3.68e-52 188
MS.gene67439.t1 MTR_3g467550 32.225 391 233 7 15 396 118 485 4.22e-52 187
MS.gene67439.t1 MTR_6g005550 33.333 390 231 10 26 408 175 542 4.82e-52 190
MS.gene67439.t1 MTR_5g092560 34.650 329 189 6 155 478 1 308 5.28e-50 181
MS.gene67439.t1 MTR_1g026830 32.283 381 220 11 15 384 148 501 7.65e-50 182
MS.gene67439.t1 MTR_2g100230 32.208 385 222 10 6 384 93 444 1.52e-49 179
MS.gene67439.t1 MTR_7g109720 32.880 368 226 7 26 392 242 589 4.84e-49 182
MS.gene67439.t1 MTR_5g027840 33.687 377 220 11 14 384 104 456 2.12e-48 177
MS.gene67439.t1 MTR_8g027770 29.820 389 252 8 10 392 197 570 3.57e-47 176
MS.gene67439.t1 MTR_2g007000 29.873 395 246 7 22 410 510 879 3.66e-47 178
MS.gene67439.t1 MTR_2g043360 28.947 456 243 10 98 472 3 458 4.88e-47 172
MS.gene67439.t1 MTR_4g068990 34.557 327 192 6 155 478 1 308 1.15e-46 172
MS.gene67439.t1 MTR_4g105100 31.783 387 221 11 27 395 200 561 1.65e-46 173
MS.gene67439.t1 MTR_4g114120 33.981 412 217 15 17 396 133 521 2.62e-46 173
MS.gene67439.t1 MTR_1g012420 30.343 379 233 7 9 384 42 392 3.97e-45 166
MS.gene67439.t1 MTR_8g042690 29.017 417 258 10 39 444 41 430 9.75e-45 165
MS.gene67439.t1 MTR_3g467550 32.203 354 208 7 15 359 118 448 1.96e-44 164
MS.gene67439.t1 MTR_4g010565 29.716 387 241 7 9 392 119 477 6.92e-44 164
MS.gene67439.t1 MTR_3g107420 29.551 379 236 7 9 384 42 392 6.97e-44 162
MS.gene67439.t1 MTR_7g057250 29.787 423 229 10 26 390 173 585 2.83e-43 166
MS.gene67439.t1 MTR_4g125970 29.730 370 232 7 22 390 47 389 1.31e-41 155
MS.gene67439.t1 MTR_8g027780 29.379 354 223 9 10 354 102 437 3.07e-41 155
MS.gene67439.t1 MTR_6g056080 30.140 428 248 13 22 422 109 512 3.51e-41 159
MS.gene67439.t1 MTR_4g125970 29.730 370 232 7 22 390 64 406 3.96e-41 154
MS.gene67439.t1 MTR_7g076830 28.609 381 243 8 2 381 128 480 3.40e-40 154
MS.gene67439.t1 MTR_7g076800 28.609 381 243 8 2 381 126 478 4.39e-40 153
MS.gene67439.t1 MTR_1g102410 30.023 443 259 13 22 438 50 467 5.11e-40 155
MS.gene67439.t1 MTR_8g018400 28.846 364 231 7 22 384 47 383 6.49e-40 150
MS.gene67439.t1 MTR_2g438110 27.747 364 235 7 22 384 40 376 1.10e-39 150
MS.gene67439.t1 MTR_7g076820 28.609 381 243 8 2 381 135 487 1.46e-39 152
MS.gene67439.t1 MTR_2g039960 28.919 370 233 8 22 389 47 388 4.35e-39 148
MS.gene67439.t1 MTR_2g099620 29.396 364 229 7 22 384 31 367 5.49e-38 145
MS.gene67439.t1 MTR_2g099620 29.396 364 229 7 22 384 47 383 6.99e-38 145
MS.gene67439.t1 MTR_6g033070 29.067 375 224 11 22 384 146 490 9.99e-38 147
MS.gene67439.t1 MTR_2g066050 31.649 376 224 9 11 381 50 397 1.23e-37 146
MS.gene67439.t1 MTR_7g100820 30.311 386 234 11 15 396 131 485 2.57e-36 144
MS.gene67439.t1 MTR_5g069330 28.312 385 242 11 15 395 8 362 5.99e-36 140
MS.gene67439.t1 MTR_5g069330 28.312 385 242 11 15 395 4 358 7.00e-36 139
MS.gene67439.t1 MTR_4g105100 30.952 336 189 11 27 344 200 510 1.54e-33 134
MS.gene67439.t1 MTR_6g039840 28.571 385 237 13 22 390 116 478 2.09e-32 132
MS.gene67439.t1 MTR_3g118120 28.989 376 222 16 41 390 157 513 1.02e-29 123
MS.gene67439.t1 MTR_2g063080 25.459 436 267 11 4 396 99 519 3.78e-27 116
MS.gene67439.t1 MTR_0915s0010 27.832 309 195 7 29 337 2 282 2.22e-24 103
MS.gene67439.t1 MTR_1g083130 25.532 423 242 10 22 396 32 429 2.52e-24 107
MS.gene67439.t1 MTR_5g077690 25.116 430 235 11 20 384 33 440 5.39e-23 103
MS.gene67439.t1 MTR_4g459350 30.052 193 130 4 7 197 34 223 1.10e-21 95.9
MS.gene67439.t1 MTR_8g018370 22.874 341 214 8 45 384 2 294 1.11e-21 96.7
MS.gene67439.t1 MTR_3g107420 30.415 217 138 5 9 222 42 248 6.65e-21 94.4
MS.gene67439.t1 MTR_6g039840 27.500 320 194 13 85 390 7 302 1.18e-20 95.9
MS.gene67439.t1 MTR_4g131750 24.725 364 245 6 26 373 92 442 9.21e-20 92.8
MS.gene67439.t1 MTR_4g077370 33.168 202 124 5 15 214 251 443 1.35e-19 92.0
MS.gene67439.t1 MTR_4g077370 34.615 208 96 8 15 213 3 179 1.22e-16 83.2
MS.gene67439.t1 MTR_1g046570 23.711 388 232 12 39 390 14 373 2.13e-16 82.0
MS.gene67439.t1 MTR_1g022305 42.683 82 44 1 314 395 221 299 1.17e-13 73.9
MS.gene67439.t1 MTR_0279s0040 39.759 83 46 1 267 349 24 102 1.43e-13 67.8
MS.gene67439.t1 MTR_1g009617 30.769 130 78 3 276 395 130 257 4.64e-12 68.6
MS.gene67439.t1 MTR_1g023070 33.696 92 59 1 304 395 27 116 4.42e-11 62.4
MS.gene67439.t1 MTR_1g023070 33.696 92 59 1 304 395 27 116 4.88e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene67439.t1 AT5G05450 70.169 590 165 3 7 589 8 593 0.0 850
MS.gene67439.t1 AT1G71370 62.917 569 188 5 1 560 1 555 0.0 738
MS.gene67439.t1 AT1G71280 46.749 569 187 10 1 560 1 462 6.85e-163 473
MS.gene67439.t1 AT1G71280 58.571 350 101 4 1 347 1 309 1.35e-137 404
MS.gene67439.t1 AT3G18600 36.726 452 262 9 10 459 86 515 1.48e-85 277
MS.gene67439.t1 AT5G65900 34.402 468 282 9 10 474 151 596 3.59e-78 259
MS.gene67439.t1 AT5G54910 36.152 473 276 10 14 484 72 520 3.25e-75 254
MS.gene67439.t1 AT5G60990 37.772 368 192 9 39 394 33 375 3.60e-60 207
MS.gene67439.t1 AT4G16630 34.737 380 216 8 22 395 174 527 1.48e-58 209
MS.gene67439.t1 AT1G77030 31.840 424 247 9 22 436 35 425 1.84e-57 207
MS.gene67439.t1 AT2G40700 30.192 520 281 11 34 472 50 568 1.86e-57 203
MS.gene67439.t1 AT3G06480 36.022 372 213 10 26 395 446 794 1.99e-56 206
MS.gene67439.t1 AT5G51280 32.530 415 238 14 15 418 148 531 1.01e-54 196
MS.gene67439.t1 AT4G33370 32.134 417 241 14 15 420 99 484 1.48e-54 194
MS.gene67439.t1 AT5G63630 29.797 443 285 10 10 444 51 475 3.71e-54 192
MS.gene67439.t1 AT2G42520 36.464 362 192 12 39 384 183 522 4.38e-54 194
MS.gene67439.t1 AT2G42520 36.464 362 192 12 39 384 183 522 4.38e-54 194
MS.gene67439.t1 AT2G42520 36.464 362 192 12 39 384 183 522 4.38e-54 194
MS.gene67439.t1 AT3G58570 35.912 362 194 11 39 384 170 509 5.32e-54 194
MS.gene67439.t1 AT5G08620 31.313 396 245 7 10 396 77 454 2.11e-53 191
MS.gene67439.t1 AT3G58510 34.772 394 213 13 13 384 141 512 3.06e-53 192
MS.gene67439.t1 AT3G58510 34.772 394 213 13 13 384 141 512 3.06e-53 192
MS.gene67439.t1 AT3G58510 34.772 394 213 13 13 384 141 512 3.06e-53 192
MS.gene67439.t1 AT5G63630 31.762 403 249 9 10 402 245 631 4.41e-53 193
MS.gene67439.t1 AT1G16280 37.069 348 188 9 39 381 82 403 1.68e-52 187
MS.gene67439.t1 AT3G22330 32.692 364 218 8 22 382 111 450 2.16e-52 189
MS.gene67439.t1 AT3G01540 31.643 414 238 13 26 431 169 545 3.82e-51 186
MS.gene67439.t1 AT3G01540 31.643 414 238 13 26 431 169 545 3.82e-51 186
MS.gene67439.t1 AT3G01540 31.643 414 238 13 26 431 169 545 3.82e-51 186
MS.gene67439.t1 AT3G01540 31.643 414 238 13 26 431 169 545 4.12e-51 186
MS.gene67439.t1 AT5G08610 31.605 405 247 7 10 402 379 765 4.81e-51 189
MS.gene67439.t1 AT3G22310 31.233 365 224 8 22 383 123 463 3.54e-50 183
MS.gene67439.t1 AT3G22310 31.233 365 224 8 22 383 123 463 4.42e-50 183
MS.gene67439.t1 AT5G14610 32.039 412 247 11 22 431 168 548 2.86e-49 181
MS.gene67439.t1 AT5G14610 32.039 412 247 11 22 431 168 548 3.26e-49 181
MS.gene67439.t1 AT5G14610 32.039 412 247 11 22 431 176 556 3.46e-49 181
MS.gene67439.t1 AT5G63120 34.247 365 208 11 26 384 176 514 4.40e-49 180
MS.gene67439.t1 AT1G31970 33.520 358 213 9 35 386 134 472 7.66e-49 178
MS.gene67439.t1 AT5G14610 32.419 401 238 11 33 431 48 417 8.64e-49 177
MS.gene67439.t1 AT5G14610 32.419 401 238 11 33 431 48 417 8.64e-49 177
MS.gene67439.t1 AT2G47330 32.249 369 230 6 22 390 235 583 4.83e-48 179
MS.gene67439.t1 AT5G14610 32.419 401 238 11 33 431 247 616 1.04e-47 178
MS.gene67439.t1 AT2G33730 32.637 383 216 8 22 384 320 680 1.58e-47 177
MS.gene67439.t1 AT5G26742 32.011 353 205 8 40 383 127 453 2.26e-47 177
MS.gene67439.t1 AT5G26742 32.011 353 205 8 40 383 127 453 2.28e-47 177
MS.gene67439.t1 AT1G20920 30.102 392 249 8 22 410 536 905 2.46e-47 179
MS.gene67439.t1 AT1G20920 30.102 392 249 8 22 410 536 905 2.46e-47 179
MS.gene67439.t1 AT1G20920 30.102 392 249 8 22 410 536 905 2.46e-47 179
MS.gene67439.t1 AT1G20920 30.102 392 249 8 22 410 536 905 2.46e-47 179
MS.gene67439.t1 AT1G20920 30.102 392 249 8 22 410 536 905 2.46e-47 179
MS.gene67439.t1 AT1G20920 30.102 392 249 8 22 410 536 905 2.46e-47 179
MS.gene67439.t1 AT3G06480 36.061 330 186 10 26 353 446 752 2.95e-47 177
MS.gene67439.t1 AT5G26742 32.386 352 202 9 41 383 36 360 3.49e-47 176
MS.gene67439.t1 AT1G55150 31.915 376 222 9 15 384 101 448 5.49e-47 172
MS.gene67439.t1 AT1G20920 30.102 392 249 8 22 410 198 567 5.58e-47 177
MS.gene67439.t1 AT1G55150 32.440 373 224 9 15 384 126 473 9.55e-47 172
MS.gene67439.t1 AT1G28180 33.526 346 200 8 44 384 2 322 1.55e-44 162
MS.gene67439.t1 AT1G51380 29.839 372 229 11 15 384 24 365 1.80e-44 163
MS.gene67439.t1 AT4G00660 28.609 381 243 8 2 381 117 469 2.07e-42 160
MS.gene67439.t1 AT4G00660 28.609 381 243 8 2 381 117 469 2.07e-42 160
MS.gene67439.t1 AT3G19760 29.679 374 231 10 13 384 35 378 3.35e-42 157
MS.gene67439.t1 AT5G11170 30.025 393 232 11 9 392 42 400 9.82e-42 156
MS.gene67439.t1 AT5G11200 30.025 393 232 11 9 392 42 400 9.82e-42 156
MS.gene67439.t1 AT1G63250 28.637 433 284 9 22 445 335 751 1.03e-41 161
MS.gene67439.t1 AT2G07750 29.062 437 277 11 22 445 382 798 1.61e-41 161
MS.gene67439.t1 AT3G09620 28.645 391 227 7 22 410 404 744 1.70e-41 161
MS.gene67439.t1 AT3G09620 28.645 391 227 7 22 410 403 743 1.73e-41 161
MS.gene67439.t1 AT3G61240 28.084 381 245 8 2 381 110 462 2.27e-41 157
MS.gene67439.t1 AT3G61240 28.084 381 245 8 2 381 110 462 2.27e-41 157
MS.gene67439.t1 AT3G09720 30.831 373 225 10 26 396 152 493 2.47e-41 157
MS.gene67439.t1 AT3G09720 30.831 373 225 10 26 396 152 493 2.47e-41 157
MS.gene67439.t1 AT2G45810 28.084 381 245 8 2 381 140 492 2.38e-40 154
MS.gene67439.t1 AT1G72730 28.877 374 234 8 17 389 47 389 2.49e-40 152
MS.gene67439.t1 AT3G13920 29.539 369 232 7 22 389 46 387 3.29e-40 151
MS.gene67439.t1 AT3G13920 29.539 369 232 7 22 389 36 377 3.95e-40 151
MS.gene67439.t1 AT3G13920 29.539 369 232 7 22 389 46 387 4.26e-40 151
MS.gene67439.t1 AT3G13920 29.539 369 232 7 22 389 50 391 4.69e-40 151
MS.gene67439.t1 AT1G54270 29.670 364 228 7 22 384 46 382 1.60e-39 149
MS.gene67439.t1 AT3G13920 29.101 378 240 7 13 389 32 382 1.65e-39 149
MS.gene67439.t1 AT5G14610 33.036 336 200 10 22 356 176 487 8.96e-39 149
MS.gene67439.t1 AT1G54270 29.830 352 219 7 34 384 53 377 3.09e-38 146
MS.gene67439.t1 AT5G11170 29.480 346 207 9 54 392 2 317 2.75e-37 142
MS.gene67439.t1 AT4G09730 28.671 429 259 15 22 432 119 518 3.21e-37 147
MS.gene67439.t1 AT5G63120 33.333 330 188 11 26 349 176 479 1.96e-36 142
MS.gene67439.t1 AT5G63120 33.134 335 190 12 26 354 176 482 2.57e-36 142
MS.gene67439.t1 AT5G63120 33.134 335 190 12 26 354 176 482 2.57e-36 142
MS.gene67439.t1 AT5G63120 33.134 335 190 12 26 354 176 482 2.57e-36 142
MS.gene67439.t1 AT5G62190 31.436 369 224 11 22 383 103 449 5.95e-36 143
MS.gene67439.t1 AT5G11200 27.869 427 238 12 9 392 42 441 7.39e-36 140
MS.gene67439.t1 AT5G11200 27.626 438 243 13 9 392 42 459 4.64e-34 135
MS.gene67439.t1 AT3G16840 27.252 433 226 14 26 390 201 612 8.73e-33 134
MS.gene67439.t1 AT3G16840 27.252 433 226 14 26 390 202 613 1.03e-32 134
MS.gene67439.t1 AT3G06980 28.906 384 243 10 23 388 382 753 1.83e-32 133
MS.gene67439.t1 AT3G02065 27.907 387 247 12 3 384 103 462 2.19e-32 131
MS.gene67439.t1 AT3G02065 27.907 387 247 12 3 384 103 462 2.19e-32 131
MS.gene67439.t1 AT1G12770 25.000 456 260 10 3 395 100 536 3.65e-30 125
MS.gene67439.t1 AT1G12770 25.000 456 260 10 3 395 100 536 3.65e-30 125
MS.gene67439.t1 AT4G15850 27.152 453 251 17 17 412 33 463 2.35e-28 119
MS.gene67439.t1 AT3G02065 27.035 344 224 10 46 384 4 325 2.71e-28 117
MS.gene67439.t1 AT3G53110 26.735 389 246 12 11 385 89 452 3.94e-26 112
MS.gene67439.t1 AT4G34910 25.635 394 234 11 22 373 53 429 3.07e-24 107
MS.gene67439.t1 AT1G51380 31.507 219 138 7 15 232 24 231 1.16e-23 101
MS.gene67439.t1 AT1G51380 31.507 219 138 7 15 232 24 231 7.73e-23 99.8
MS.gene67439.t1 AT1G51380 31.507 219 138 7 15 232 24 231 9.87e-23 99.4
MS.gene67439.t1 AT5G19210 24.740 384 261 7 24 392 85 455 2.83e-20 94.7
MS.gene67439.t1 AT1G28180 35.897 117 70 3 44 157 2 116 1.50e-11 62.4
MS.gene67439.t1 AT1G59990 30.093 216 124 7 22 225 87 287 3.15e-11 66.6
MS.gene67439.t1 AT1G59990 30.093 216 124 7 22 225 87 287 3.24e-11 66.6

Find 141 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGAATCGGATGGATATTT+TGG 0.098405 3.1:-58589030 MS.gene67439:CDS
TGGCTTCTTTCTTTACTTGC+AGG 0.214905 3.1:+58584850 None:intergenic
TGATAGCATTTATCTGCTTC+TGG 0.233957 3.1:+58588424 None:intergenic
TTGTGCTTGTGTTGACTATT+GGG 0.252553 3.1:-58587798 MS.gene67439:CDS
GGAGGAACCTGGTGAGGTTT+GGG 0.292465 3.1:+58589331 None:intergenic
GGGATAGTGGCGGCTTGAAC+GGG 0.311237 3.1:+58589463 None:intergenic
GTCGATGCCGCCACCGGTTC+CGG 0.316733 3.1:-58589412 MS.gene67439:CDS
TTCGCTAAAGTCGAAATAAA+AGG 0.318766 3.1:+58589164 None:intergenic
TCGAAATTGATATCTTTAAC+TGG 0.318792 3.1:+58586308 None:intergenic
CTCATGGCAGTAGGTACTTC+AGG 0.321137 3.1:+58584789 None:intergenic
CTTGTGCTTGTGTTGACTAT+TGG 0.322627 3.1:-58587799 MS.gene67439:CDS
GGGAGGAACCTGGTGAGGTT+TGG 0.322712 3.1:+58589330 None:intergenic
TGCGACGCTAATTCCCTTGT+AGG 0.324437 3.1:+58589206 None:intergenic
ACCCTATGTACGAACACATT+TGG 0.326512 3.1:+58587257 None:intergenic
GGTACTTCAGGAGTTCTCTT+TGG 0.346860 3.1:+58584801 None:intergenic
AGGTGGAAAGAACTTGAAAT+TGG 0.350487 3.1:-58586416 MS.gene67439:CDS
GGTTGGTCGAACTGCTCGGC+TGG 0.352335 3.1:-58587237 MS.gene67439:CDS
GGCTGATAGACTATTAGATA+TGG 0.362002 3.1:-58588451 MS.gene67439:CDS
TTCTCCTTGATCTCCCTTCA+TGG 0.368126 3.1:-58587740 MS.gene67439:CDS
GATAGTGGCGGCTTGAACGG+GGG 0.370101 3.1:+58589465 None:intergenic
CCCTATGTACGAACACATTT+GGG 0.373541 3.1:+58587258 None:intergenic
TTGCCTAAGCTTCGAAGAAC+TGG 0.383379 3.1:-58588393 MS.gene67439:CDS
GTTGAGGTTAATGCTTTGTT+GGG 0.388895 3.1:+58589565 None:intergenic
GTTTGGGATTGGAAGCGTTC+CGG 0.390910 3.1:+58589347 None:intergenic
GGCATATTCATCCTCATCTA+TGG 0.399507 3.1:+58584668 None:intergenic
GTCTTTGTAGCTGCAGAGTA+AGG 0.400408 3.1:+58589441 None:intergenic
ATGTCATGGAGAAGGGAGTC+AGG 0.405545 3.1:-58586572 MS.gene67439:CDS
AGGATTCCTCAATCCTGCTT+TGG 0.407237 3.1:+58588329 None:intergenic
CAAAAGAATTCCATTTGAAA+GGG 0.416153 3.1:+58587517 None:intergenic
TCTTCAATTTCTTCAACAAC+CGG 0.422064 3.1:+58584697 None:intergenic
AGTTGAGGTTAATGCTTTGT+TGG 0.423528 3.1:+58589564 None:intergenic
TCATTTACATCCCTTTCAAA+TGG 0.430625 3.1:-58587527 MS.gene67439:CDS
ATTTCGAGGAGATTAGATTC+AGG 0.431126 3.1:-58586292 MS.gene67439:intron
TTTGGTTATTTGTAGGTGCT+TGG 0.431263 3.1:-58589242 MS.gene67439:intron
GAGTCTTCAAAGACACCTTC+AGG 0.436469 3.1:-58588243 MS.gene67439:CDS
AATGTATTGATTGGCACGCC+GGG 0.448464 3.1:-58589068 MS.gene67439:CDS
GGATAGTGGCGGCTTGAACG+GGG 0.450785 3.1:+58589464 None:intergenic
TTTAGCTGTTTGCTTTCTCA+TGG 0.452366 3.1:+58584773 None:intergenic
ATCCTCTGTGCCTGTCAACT+TGG 0.453170 3.1:+58584647 None:intergenic
TCTGTGAGAGCTTGAAGAAC+GGG 0.456416 3.1:+58589508 None:intergenic
AAGCCAGTTCTTCGAAGCTT+AGG 0.459046 3.1:+58588390 None:intergenic
TTTGGATTTCAAAAGCTTTG+AGG 0.461707 3.1:-58589012 MS.gene67439:intron
GAGAGCTTGAAGAACGGGTT+CGG 0.462659 3.1:+58589513 None:intergenic
GATGAATATGCCAAGTTGAC+AGG 0.467389 3.1:-58584657 MS.gene67439:CDS
ACAAAAGAATTCCATTTGAA+AGG 0.468025 3.1:+58587516 None:intergenic
ATGAAGAAAATTGAGGAAGA+AGG 0.468170 3.1:-58589095 MS.gene67439:CDS
GAAGGAGCAAATGTATTGAT+TGG 0.470143 3.1:-58589077 MS.gene67439:CDS
CTTTCCATGAAGGGAGATCA+AGG 0.478395 3.1:+58587736 None:intergenic
TAATGCTTTGTTGGGGAACT+CGG 0.478400 3.1:+58589573 None:intergenic
CCCAAATGTGTTCGTACATA+GGG 0.481660 3.1:-58587258 MS.gene67439:CDS
GGCAAATTAGCCACGGGACA+TGG 0.486232 3.1:-58586395 MS.gene67439:CDS
GGGGATAGTGGCGGCTTGAA+CGG 0.488716 3.1:+58589462 None:intergenic
GTTGGGGAACTCGGAGTCCA+TGG 0.492465 3.1:+58589582 None:intergenic
GTGGAAGAGCTTGCCAAAGC+AGG 0.492512 3.1:-58588342 MS.gene67439:CDS
GTTTGCTTTCTCATGGCAGT+AGG 0.493178 3.1:+58584780 None:intergenic
GTTAAATCAATGCTACTTGT+TGG 0.495004 3.1:-58589140 MS.gene67439:CDS
AGTTAAAGATATCAATTTCG+AGG 0.496514 3.1:-58586306 MS.gene67439:CDS
CAAGTGGAATGACGAAAGCT+AGG 0.496591 3.1:+58589383 None:intergenic
TGTTGAAGAAATTGAAGAAA+GGG 0.497161 3.1:-58584692 MS.gene67439:CDS
CCTGCTTCATCTTTCCATGA+AGG 0.498559 3.1:+58587726 None:intergenic
TATAACATCAGGTGCATTGT+CGG 0.498976 3.1:+58587016 None:intergenic
AGCAGATATGAAGAAAATTG+AGG 0.509076 3.1:-58589102 MS.gene67439:CDS
TTGTTGAAGAAATTGAAGAA+AGG 0.513692 3.1:-58584693 MS.gene67439:CDS
GCTCGAACTTCAACCCTCAC+AGG 0.515886 3.1:+58588309 None:intergenic
TAAACCTCGGGTATAACATC+AGG 0.516672 3.1:+58587005 None:intergenic
GCTGATAGACTATTAGATAT+GGG 0.519123 3.1:-58588450 MS.gene67439:CDS
TGCTACTCAAACTCAGGCTG+TGG 0.524602 3.1:-58588361 MS.gene67439:CDS
GATTACATGATATTATGAAT+CGG 0.526578 3.1:-58589043 MS.gene67439:CDS
AACCTGGTGAGGTTTGGGAT+TGG 0.529734 3.1:+58589336 None:intergenic
TTCCAATCCCAAACCTCACC+AGG 0.530067 3.1:-58589338 MS.gene67439:intron
ATTCTCTGCTACTCAAACTC+AGG 0.530389 3.1:-58588367 MS.gene67439:CDS
GCTGCAGAGTAAGGGGATAG+TGG 0.534078 3.1:+58589450 None:intergenic
TGTTGTCTTCTTATTACCAA+AGG 0.535024 3.1:-58587198 MS.gene67439:intron
CTGCTTCATCTTTCCATGAA+GGG 0.535878 3.1:+58587727 None:intergenic
ACCTTCAGGTCTTCACATTG+AGG 0.536458 3.1:-58588229 MS.gene67439:intron
TTGTGTTGACTATTGGGGAG+TGG 0.537431 3.1:-58587792 MS.gene67439:CDS
AAGAGTTGACGCAAGAATAC+CGG 0.542711 3.1:-58584716 MS.gene67439:CDS
ATTGCAACTTCCTTTAGTGC+CGG 0.543669 3.1:-58586369 MS.gene67439:CDS
TGAAGAACGGGTTCGGAGAG+TGG 0.543714 3.1:+58589520 None:intergenic
ACCCAAATGTGTTCGTACAT+AGG 0.544504 3.1:-58587259 MS.gene67439:CDS
AGATCGTGATGTCATGGAGA+AGG 0.548299 3.1:-58586580 MS.gene67439:CDS
CGGCGAAGAATTTCGACAAG+TGG 0.548528 3.1:+58589367 None:intergenic
GAGTGATTATATCTCCTACA+AGG 0.549275 3.1:-58589220 MS.gene67439:CDS
ACTGCTCGGCTGGGTAAACA+AGG 0.550811 3.1:-58587227 MS.gene67439:CDS
GTCGCCGTCGATGCCGCCAC+CGG 0.552287 3.1:-58589418 MS.gene67439:CDS
ATAGGGTTGGTCGAACTGCT+CGG 0.553877 3.1:-58587241 MS.gene67439:CDS
AAATGTATTGATTGGCACGC+CGG 0.554629 3.1:-58589069 MS.gene67439:CDS
TCTTTGTAGCTGCAGAGTAA+GGG 0.556900 3.1:+58589442 None:intergenic
GGAACCGGTGGCGGCATCGA+CGG 0.557986 3.1:+58589414 None:intergenic
GTTGGTCGAACTGCTCGGCT+GGG 0.559137 3.1:-58587236 MS.gene67439:CDS
TATATAGTCTGTCAGGGAGA+AGG 0.560987 3.1:-58587558 MS.gene67439:intron
GTCTGTGAGAGCTTGAAGAA+CGG 0.568734 3.1:+58589507 None:intergenic
CACTTGTCGAAATTCTTCGC+CGG 0.571139 3.1:-58589366 MS.gene67439:CDS
GATCGTGATGTCATGGAGAA+GGG 0.571489 3.1:-58586579 MS.gene67439:CDS
ACATGATATTATGAATCGGA+TGG 0.579664 3.1:-58589039 MS.gene67439:CDS
TGGTGTAGACTGTATAGTGC+AGG 0.579703 3.1:-58587459 MS.gene67439:intron
AGCTTGCCAAAGCAGGATTG+AGG 0.581011 3.1:-58588335 MS.gene67439:CDS
ACCTCAATGTGAAGACCTGA+AGG 0.582539 3.1:+58588228 None:intergenic
TGTACGGATGTTGCAGCACG+TGG 0.584350 3.1:-58587494 MS.gene67439:CDS
ATAAATCAAGAGAGAAACAA+AGG 0.586055 3.1:-58584881 MS.gene67439:CDS
ACGAACACATTTGGGTCTTG+AGG 0.586361 3.1:+58587266 None:intergenic
AACAAAAGATCGTGATGTCA+TGG 0.590128 3.1:-58586586 MS.gene67439:CDS
CTTTGTAGCTGCAGAGTAAG+GGG 0.590827 3.1:+58589443 None:intergenic
AACACATTTGGGTCTTGAGG+AGG 0.592214 3.1:+58587269 None:intergenic
TAAGCAGACAGTTGAAGATG+AGG 0.592692 3.1:-58584739 MS.gene67439:CDS
TGAAATTGGCAAATTAGCCA+CGG 0.593432 3.1:-58586402 MS.gene67439:CDS
GAGCACATTCTCTCTTGAAG+AGG 0.594936 3.1:+58587038 None:intergenic
AAATCAATGCTACTTGTTGG+TGG 0.597917 3.1:-58589137 MS.gene67439:CDS
GAAATTGGCAAATTAGCCAC+GGG 0.598244 3.1:-58586401 MS.gene67439:CDS
TTTAACTGGTTCAAATCCCA+CGG 0.599568 3.1:+58586322 None:intergenic
CCTTCATGGAAAGATGAAGC+AGG 0.600565 3.1:-58587726 MS.gene67439:intron
TGTGCTTGTGTTGACTATTG+GGG 0.604078 3.1:-58587797 MS.gene67439:CDS
AGAAGCCTTTCAAAACAGAA+AGG 0.606204 3.1:+58587759 None:intergenic
AAGTGGAATGACGAAAGCTA+GGG 0.608754 3.1:+58589384 None:intergenic
CGCCACTCACTATCCACCGT+GGG 0.618119 3.1:-58586338 MS.gene67439:CDS
AGTGATTATATCTCCTACAA+GGG 0.619719 3.1:-58589219 MS.gene67439:CDS
AGGAAATCTACAAGCTGTGA+CGG 0.627262 3.1:+58587947 None:intergenic
AATGTGTTCGTACATAGGGT+TGG 0.628554 3.1:-58587254 MS.gene67439:CDS
AATGCTACTTGTTGGTGGAG+TGG 0.628643 3.1:-58589132 MS.gene67439:CDS
TGCACCTGATGTTATACCCG+AGG 0.631727 3.1:-58587009 MS.gene67439:intron
GCACGTGGACTTGACATACC+TGG 0.634273 3.1:-58587479 MS.gene67439:CDS
GAAGAAAGGGACCATAGATG+AGG 0.634552 3.1:-58584679 MS.gene67439:CDS
ATAATATCATGTAATCGCCC+CGG 0.635271 3.1:+58589050 None:intergenic
CTTGCAGTACTTGGAATGTG+AGG 0.636915 3.1:-58587981 MS.gene67439:intron
AGAACGGGTTCGGAGAGTGG+TGG 0.641488 3.1:+58589523 None:intergenic
ATCCCACGGTGGATAGTGAG+TGG 0.643637 3.1:+58586336 None:intergenic
TTGAGGTTAATGCTTTGTTG+GGG 0.644922 3.1:+58589566 None:intergenic
AGGATTGAGGAATCCTGTGA+GGG 0.652822 3.1:-58588322 MS.gene67439:CDS
TGTCATGGAGAAGGGAGTCA+GGG 0.653830 3.1:-58586571 MS.gene67439:CDS
TTGCAATAAGCCATGTCCCG+TGG 0.654749 3.1:+58586385 None:intergenic
TGCACTATACAGTCTACACC+AGG 0.665445 3.1:+58587461 None:intergenic
CCTTTCAAAACAGAAAGGCG+AGG 0.674569 3.1:+58587764 None:intergenic
GCAGAGTAAGGGGATAGTGG+CGG 0.676114 3.1:+58589453 None:intergenic
GGAGAGGGAGGAACCTGGTG+AGG 0.681157 3.1:+58589325 None:intergenic
TAGGTCGGAGAAACGAGTTG+AGG 0.684963 3.1:+58589549 None:intergenic
ATGTATTGATTGGCACGCCG+GGG 0.688464 3.1:-58589067 MS.gene67439:CDS
CAGGATTGAGGAATCCTGTG+AGG 0.689064 3.1:-58588323 MS.gene67439:CDS
TGCCAAGTTGACAGGCACAG+AGG 0.710992 3.1:-58584649 MS.gene67439:CDS
ACGCCACTCACTATCCACCG+TGG 0.727058 3.1:-58586339 MS.gene67439:CDS
CTGCTCGGCTGGGTAAACAA+GGG 0.728024 3.1:-58587226 MS.gene67439:CDS
AACTGGTTCAAATCCCACGG+TGG 0.741727 3.1:+58586325 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAAACTTCAAATTTTATA+GGG - chr3.1:58589314-58589333 MS.gene67439:intron 10.0%
!! AAATTAACCAAAAAAATGAA+GGG + chr3.1:58586091-58586110 None:intergenic 15.0%
!! ATATTTCAGGATTTATTATT+TGG - chr3.1:58585610-58585629 MS.gene67439:intron 15.0%
!! TAAATTAACCAAAAAAATGA+AGG + chr3.1:58586092-58586111 None:intergenic 15.0%
!! TACCTATAACTAAAAAAATA+GGG + chr3.1:58588971-58588990 None:intergenic 15.0%
!!! ACATTATAATTTTTTTTGAG+CGG + chr3.1:58586306-58586325 None:intergenic 15.0%
!!! CTTAAAACTTCAAATTTTAT+AGG - chr3.1:58589313-58589332 MS.gene67439:intron 15.0%
!!! TTTAATTTTGAAAATAGAAG+TGG - chr3.1:58588473-58588492 MS.gene67439:intron 15.0%
!! AAAAATAAATCTAACAGTGA+AGG + chr3.1:58587459-58587478 None:intergenic 20.0%
!! AATACATGAAACATCTTATA+TGG + chr3.1:58586149-58586168 None:intergenic 20.0%
!! AATGATTAACCTAATTGAAT+TGG + chr3.1:58584924-58584943 None:intergenic 20.0%
!! ACATAATTGAATGTAATGTA+AGG - chr3.1:58585482-58585501 MS.gene67439:intron 20.0%
!! AGTAAAAGATAAGAGTTTAA+TGG + chr3.1:58585417-58585436 None:intergenic 20.0%
!! ATGAATATTGACAATTAGAA+AGG + chr3.1:58587972-58587991 None:intergenic 20.0%
!! ATGTTTCATGTATTACTAAT+AGG - chr3.1:58586155-58586174 MS.gene67439:intron 20.0%
!! CTACCTATAACTAAAAAAAT+AGG + chr3.1:58588972-58588991 None:intergenic 20.0%
!! GATTACATGATATTATGAAT+CGG - chr3.1:58585175-58585194 MS.gene67439:intron 20.0%
!! GTAAAAGATAAGAGTTTAAT+GGG + chr3.1:58585416-58585435 None:intergenic 20.0%
!! TAAAAGATAAGAGTTTAATG+GGG + chr3.1:58585415-58585434 None:intergenic 20.0%
!! TAAAGTTCGACAAAAATAAT+GGG + chr3.1:58586608-58586627 None:intergenic 20.0%
!! TATGAAAATCAAAATTGAGT+TGG - chr3.1:58588908-58588927 MS.gene67439:intron 20.0%
!! TATTTCTTCATATTTATCAC+TGG - chr3.1:58586874-58586893 MS.gene67439:intron 20.0%
!! TTTACTGTTTGTATACTTAT+TGG - chr3.1:58586624-58586643 MS.gene67439:intron 20.0%
!!! ATCCCTATTTTTTTAGTTAT+AGG - chr3.1:58588966-58588985 MS.gene67439:intron 20.0%
!!! ATTATTGTTACATTTTCCAA+GGG - chr3.1:58588670-58588689 MS.gene67439:intron 20.0%
!!! GTTAAGTTATCTTTAAAAAG+CGG - chr3.1:58585314-58585333 MS.gene67439:intron 20.0%
!!! TATTATTGTTACATTTTCCA+AGG - chr3.1:58588669-58588688 MS.gene67439:intron 20.0%
!!! TCTTTAAGCTTATCTTTTTA+TGG - chr3.1:58587093-58587112 MS.gene67439:intron 20.0%
!!! TGATCATAATTTTGTTATCA+GGG + chr3.1:58587587-58587606 None:intergenic 20.0%
!!! TTAAGTTTTATTGATTGTCT+AGG - chr3.1:58587489-58587508 MS.gene67439:CDS 20.0%
!!! TTGATCATAATTTTGTTATC+AGG + chr3.1:58587588-58587607 None:intergenic 20.0%
!!! TTTAAGATTCCTTATATTTG+TGG - chr3.1:58585678-58585697 MS.gene67439:intron 20.0%
! ACAAAAGAATTCCATTTGAA+AGG + chr3.1:58586705-58586724 None:intergenic 25.0%
! AGTTAAAGATATCAATTTCG+AGG - chr3.1:58587912-58587931 MS.gene67439:intron 25.0%
! ATAAATCAAGAGAGAAACAA+AGG - chr3.1:58589337-58589356 MS.gene67439:intron 25.0%
! ATGAAGAAATATTTGAACCA+CGG + chr3.1:58586865-58586884 None:intergenic 25.0%
! ATTAATCTATGTCAATGTGT+AGG - chr3.1:58587119-58587138 MS.gene67439:intron 25.0%
! ATTTGGGTATTAATAGGAAT+AGG - chr3.1:58585702-58585721 MS.gene67439:intron 25.0%
! CAAAAGAATTCCATTTGAAA+GGG + chr3.1:58586704-58586723 None:intergenic 25.0%
! CACTTCATTATCACATAAAT+TGG + chr3.1:58584956-58584975 None:intergenic 25.0%
! CAGATGTACAAAAGTTATAT+TGG - chr3.1:58588614-58588633 MS.gene67439:intron 25.0%
! CATATCTTCTAACAAGATAA+AGG - chr3.1:58588342-58588361 MS.gene67439:CDS 25.0%
! CTTTATCTTGTTAGAAGATA+TGG + chr3.1:58588344-58588363 None:intergenic 25.0%
! GTAAAGTTCGACAAAAATAA+TGG + chr3.1:58586609-58586628 None:intergenic 25.0%
! TAAAATATGGACAATGCAAA+GGG - chr3.1:58588418-58588437 MS.gene67439:CDS 25.0%
! TAATATAGAAGCTAATCTCA+CGG + chr3.1:58588100-58588119 None:intergenic 25.0%
! TCAAATTGAAAAATAAACCG+TGG - chr3.1:58586845-58586864 MS.gene67439:intron 25.0%
! TCGAAATTGATATCTTTAAC+TGG + chr3.1:58587913-58587932 None:intergenic 25.0%
! TGTTGAAGAAATTGAAGAAA+GGG - chr3.1:58589526-58589545 MS.gene67439:CDS 25.0%
! TTAAAAAGCGGTTACAAATT+AGG - chr3.1:58585326-58585345 MS.gene67439:intron 25.0%
! TTAAAATATGGACAATGCAA+AGG - chr3.1:58588417-58588436 MS.gene67439:CDS 25.0%
! TTAAAATTCAGCACAAGTTT+AGG + chr3.1:58588447-58588466 None:intergenic 25.0%
! TTGTTGAAGAAATTGAAGAA+AGG - chr3.1:58589525-58589544 MS.gene67439:CDS 25.0%
! TTTCATCTTGTTGAAGATAT+GGG + chr3.1:58588290-58588309 None:intergenic 25.0%
!! AAATGGAATTCTTTTGTGTA+CGG - chr3.1:58586708-58586727 MS.gene67439:intron 25.0%
!! ATTTTTCTATATAGTCTGTC+AGG - chr3.1:58586653-58586672 MS.gene67439:intron 25.0%
!! TATAACTTTTGTACATCTGA+TGG + chr3.1:58588613-58588632 None:intergenic 25.0%
!! TTATGTGATAATGAAGTGTT+TGG - chr3.1:58584958-58584977 MS.gene67439:intron 25.0%
!! TTATTGTTACATTTTCCAAG+GGG - chr3.1:58588671-58588690 MS.gene67439:intron 25.0%
!! TTTTTCTATATAGTCTGTCA+GGG - chr3.1:58586654-58586673 MS.gene67439:intron 25.0%
!!! AGATTAGCTTCTATATTACT+TGG - chr3.1:58588102-58588121 MS.gene67439:intron 25.0%
!!! AGCTTGTTATGCTTAAAATA+TGG - chr3.1:58588405-58588424 MS.gene67439:CDS 25.0%
!!! GAGTTTTGATCAATAAAATG+AGG - chr3.1:58589224-58589243 MS.gene67439:CDS 25.0%
AACCTAATTGAATTGGAATG+AGG + chr3.1:58584917-58584936 None:intergenic 30.0%
AAGCTCGAAAAGAAAAGAAA+AGG + chr3.1:58586220-58586239 None:intergenic 30.0%
AATATAGAAGCTAATCTCAC+GGG + chr3.1:58588099-58588118 None:intergenic 30.0%
ACATGATATTATGAATCGGA+TGG - chr3.1:58585179-58585198 MS.gene67439:intron 30.0%
ACCAATTACTACATCCTTAT+TGG + chr3.1:58585293-58585312 None:intergenic 30.0%
AGCAGATATGAAGAAAATTG+AGG - chr3.1:58585116-58585135 MS.gene67439:intron 30.0%
AGTGATTATATCTCCTACAA+GGG - chr3.1:58584999-58585018 MS.gene67439:intron 30.0%
ATCAAGATCAACAAAGAACT+TGG + chr3.1:58589055-58589074 None:intergenic 30.0%
ATGAAGAAAATTGAGGAAGA+AGG - chr3.1:58585123-58585142 MS.gene67439:intron 30.0%
ATTCAAATTGAGCTTCAGAT+TGG - chr3.1:58588883-58588902 MS.gene67439:intron 30.0%
ATTGATTGTCTAGGTAAACA+CGG - chr3.1:58587498-58587517 MS.gene67439:CDS 30.0%
ATTTGTTTCCCTGTTCAATT+AGG - chr3.1:58588136-58588155 MS.gene67439:intron 30.0%
CTTTCATCTTGTTGAAGATA+TGG + chr3.1:58588291-58588310 None:intergenic 30.0%
GCTGATAGACTATTAGATAT+GGG - chr3.1:58585768-58585787 MS.gene67439:intron 30.0%
GGATTTATTATTTGGTCATG+TGG - chr3.1:58585618-58585637 MS.gene67439:intron 30.0%
TAAACTAGAGATTAGATGTG+TGG - chr3.1:58586034-58586053 MS.gene67439:intron 30.0%
TCATTTACATCCCTTTCAAA+TGG - chr3.1:58586691-58586710 MS.gene67439:intron 30.0%
TCCTTATATTTGTGGCATTT+GGG - chr3.1:58585686-58585705 MS.gene67439:intron 30.0%
TCTTCAATTTCTTCAACAAC+CGG + chr3.1:58589524-58589543 None:intergenic 30.0%
TCTTTGTTGATCTTGATTGA+GGG - chr3.1:58589058-58589077 MS.gene67439:CDS 30.0%
TGTACTTGGAATAAGTTAGA+AGG + chr3.1:58589162-58589181 None:intergenic 30.0%
TGTTAGGTGAAACTCATTAA+TGG - chr3.1:58588572-58588591 MS.gene67439:intron 30.0%
TGTTGTCTTCTTATTACCAA+AGG - chr3.1:58587020-58587039 MS.gene67439:CDS 30.0%
TTACCAATGAAACACAGAAA+TGG - chr3.1:58585440-58585459 MS.gene67439:intron 30.0%
TTCAAATTGAGCTTCAGATT+GGG - chr3.1:58588884-58588903 MS.gene67439:intron 30.0%
TTCCTTATATTTGTGGCATT+TGG - chr3.1:58585685-58585704 MS.gene67439:intron 30.0%
TTCGCTAAAGTCGAAATAAA+AGG + chr3.1:58585057-58585076 None:intergenic 30.0%
TTCTTTGTTGATCTTGATTG+AGG - chr3.1:58589057-58589076 MS.gene67439:CDS 30.0%
TTGAATGTAATGTAAGGTGT+CGG - chr3.1:58585488-58585507 MS.gene67439:intron 30.0%
TTGTTATCAGGGAATTGAAA+GGG + chr3.1:58587576-58587595 None:intergenic 30.0%
TTTCAAAACTGACAAATGCT+TGG + chr3.1:58586539-58586558 None:intergenic 30.0%
TTTGGATTTCAAAAGCTTTG+AGG - chr3.1:58585206-58585225 MS.gene67439:intron 30.0%
! ACATCTAATCTCTAGTTTAC+TGG + chr3.1:58586033-58586052 None:intergenic 30.0%
! ATCACTGCTCTTATATTTTC+AGG - chr3.1:58587703-58587722 MS.gene67439:intron 30.0%
! GTTAAATCAATGCTACTTGT+TGG - chr3.1:58585078-58585097 MS.gene67439:intron 30.0%
! TACTGTGTTGTCATGTTTTA+TGG - chr3.1:58587260-58587279 MS.gene67439:CDS 30.0%
! TATGAATCGGATGGATATTT+TGG - chr3.1:58585188-58585207 MS.gene67439:intron 30.0%
! TCATGTTTTATGGATGCAAT+AGG - chr3.1:58587270-58587289 MS.gene67439:CDS 30.0%
! TCTTCAAGATACTTTGAAGA+GGG - chr3.1:58589000-58589019 MS.gene67439:intron 30.0%
! TGAAGTGTTTGGTTATTTGT+AGG - chr3.1:58584969-58584988 MS.gene67439:intron 30.0%
! TTCTTCAAGATACTTTGAAG+AGG - chr3.1:58588999-58589018 MS.gene67439:intron 30.0%
! TTTGTTATCAGGGAATTGAA+AGG + chr3.1:58587577-58587596 None:intergenic 30.0%
! TTTTAAGCATAACAAGCTCT+CGG + chr3.1:58588403-58588422 None:intergenic 30.0%
!! TAATGTGCTGATTACCTTAT+AGG - chr3.1:58587408-58587427 MS.gene67439:intron 30.0%
!! TCCAAGTACACTTTTTAACT+CGG - chr3.1:58589172-58589191 MS.gene67439:CDS 30.0%
!! TGTTCTAGAGAGAATATTTC+AGG - chr3.1:58585597-58585616 MS.gene67439:intron 30.0%
!!! CTCTTTGGTTTTTTAGGTTT+TGG + chr3.1:58589405-58589424 None:intergenic 30.0%
!!! GTAGAATCCCTTCATTTTTT+TGG - chr3.1:58586081-58586100 MS.gene67439:intron 30.0%
AAATTCAGCACAAGTTTAGG+TGG + chr3.1:58588444-58588463 None:intergenic 35.0%
AACAAAAGATCGTGATGTCA+TGG - chr3.1:58587632-58587651 MS.gene67439:intron 35.0%
AAGCAGTAACCCCTATTTAT+AGG + chr3.1:58588179-58588198 None:intergenic 35.0%
AATCTATGTCAATGTGTAGG+AGG - chr3.1:58587122-58587141 MS.gene67439:intron 35.0%
AATTGAATTGGAATGAGGAG+AGG + chr3.1:58584912-58584931 None:intergenic 35.0%
ACCCAAATGCCACAAATATA+AGG + chr3.1:58585690-58585709 None:intergenic 35.0%
ACTCTACCGGAATACTATTA+CGG + chr3.1:58587355-58587374 None:intergenic 35.0%
ACTGCTAATCCTAATTGAAC+AGG + chr3.1:58588148-58588167 None:intergenic 35.0%
AGAAGCCTTTCAAAACAGAA+AGG + chr3.1:58586462-58586481 None:intergenic 35.0%
AGCAGTAACCCCTATTTATA+GGG + chr3.1:58588178-58588197 None:intergenic 35.0%
AGCTTATTATATCTAGCACG+CGG - chr3.1:58588375-58588394 MS.gene67439:CDS 35.0%
AGGTGGAAAGAACTTGAAAT+TGG - chr3.1:58587802-58587821 MS.gene67439:CDS 35.0%
AGTTGAGGTTAATGCTTTGT+TGG + chr3.1:58584657-58584676 None:intergenic 35.0%
ATAATATCATGTAATCGCCC+CGG + chr3.1:58585171-58585190 None:intergenic 35.0%
ATCATACTGTGGAATAACAG+AGG + chr3.1:58586929-58586948 None:intergenic 35.0%
ATCGATTGACAACCATAACA+AGG + chr3.1:58587302-58587321 None:intergenic 35.0%
ATTGAATTGGAATGAGGAGA+GGG + chr3.1:58584911-58584930 None:intergenic 35.0%
ATTTCGAGGAGATTAGATTC+AGG - chr3.1:58587926-58587945 MS.gene67439:CDS 35.0%
CACATTAGTATGTTGTAGCA+GGG + chr3.1:58587395-58587414 None:intergenic 35.0%
CATGTTCACAAAGAAGAACT+GGG + chr3.1:58587532-58587551 None:intergenic 35.0%
CGGTGCAAAATAAATTCACA+CGG - chr3.1:58585384-58585403 MS.gene67439:intron 35.0%
CTCCTCATTCCAATTCAATT+AGG - chr3.1:58584912-58584931 MS.gene67439:intron 35.0%
CTGCTAATCCTAATTGAACA+GGG + chr3.1:58588147-58588166 None:intergenic 35.0%
GAACTACCGTAATAGTATTC+CGG - chr3.1:58587346-58587365 MS.gene67439:intron 35.0%
GAGTGATTATATCTCCTACA+AGG - chr3.1:58584998-58585017 MS.gene67439:intron 35.0%
GATAATCAGACCATTCCAAA+AGG + chr3.1:58588204-58588223 None:intergenic 35.0%
GATCTTGATTGAGGGATTAT+GGG - chr3.1:58589066-58589085 MS.gene67439:CDS 35.0%
GCAATATAGTGTGTTCCTAT+TGG - chr3.1:58585357-58585376 MS.gene67439:intron 35.0%
GCCAATAAGGATGTAGTAAT+TGG - chr3.1:58585289-58585308 MS.gene67439:intron 35.0%
GGCTGATAGACTATTAGATA+TGG - chr3.1:58585767-58585786 MS.gene67439:intron 35.0%
GGTTACAAATTAGGCTTAGA+TGG - chr3.1:58585335-58585354 MS.gene67439:intron 35.0%
GTCTTGTCTCCCTATAAATA+GGG - chr3.1:58588166-58588185 MS.gene67439:intron 35.0%
TAAAAGCCGAGAATAAACCT+CGG + chr3.1:58587229-58587248 None:intergenic 35.0%
TATAACATCAGGTGCATTGT+CGG + chr3.1:58587205-58587224 None:intergenic 35.0%
TCAAATTGAGCTTCAGATTG+GGG - chr3.1:58588885-58588904 MS.gene67439:intron 35.0%
TCATGTTCACAAAGAAGAAC+TGG + chr3.1:58587533-58587552 None:intergenic 35.0%
TCGAAAGACAACACGAATAT+AGG + chr3.1:58589135-58589154 None:intergenic 35.0%
TCGATTGACAACCATAACAA+GGG + chr3.1:58587301-58587320 None:intergenic 35.0%
TCTTGTCTCCCTATAAATAG+GGG - chr3.1:58588167-58588186 MS.gene67439:intron 35.0%
TGAAATTGGCAAATTAGCCA+CGG - chr3.1:58587816-58587835 MS.gene67439:intron 35.0%
TGATAGCATTTATCTGCTTC+TGG + chr3.1:58585797-58585816 None:intergenic 35.0%
TGATCTTGATTGAGGGATTA+TGG - chr3.1:58589065-58589084 MS.gene67439:CDS 35.0%
TGATTACCTTATAGGCTGAA+TGG - chr3.1:58587416-58587435 MS.gene67439:intron 35.0%
TGTGGCATTTGGGTATTAAT+AGG - chr3.1:58585696-58585715 MS.gene67439:intron 35.0%
TTATACCCGAGGTTTATTCT+CGG - chr3.1:58587220-58587239 MS.gene67439:CDS 35.0%
TTTAAGCATAACAAGCTCTC+GGG + chr3.1:58588402-58588421 None:intergenic 35.0%
TTTAGCTGTTTGCTTTCTCA+TGG + chr3.1:58589448-58589467 None:intergenic 35.0%
TTTGAAAATAGAAGTGGCCA+TGG - chr3.1:58588479-58588498 MS.gene67439:intron 35.0%
TTTGGTTATTTGTAGGTGCT+TGG - chr3.1:58584976-58584995 MS.gene67439:intron 35.0%
! AAATCAATGCTACTTGTTGG+TGG - chr3.1:58585081-58585100 MS.gene67439:intron 35.0%
! ACATTGAGGTATTACCTATG+TGG - chr3.1:58586003-58586022 MS.gene67439:intron 35.0%
! ACCGAGTTAAAAAGTGTACT+TGG + chr3.1:58589176-58589195 None:intergenic 35.0%
! AGTCTTGTCTCCCTATAAAT+AGG - chr3.1:58588165-58588184 MS.gene67439:intron 35.0%
! ATGCTTTCAATCAGAAGTGT+CGG - chr3.1:58585536-58585555 MS.gene67439:intron 35.0%
! CTTCAAGATACTTTGAAGAG+GGG - chr3.1:58589001-58589020 MS.gene67439:intron 35.0%
! GAAGGAGCAAATGTATTGAT+TGG - chr3.1:58585141-58585160 MS.gene67439:intron 35.0%
! GTTGAGGTTAATGCTTTGTT+GGG + chr3.1:58584656-58584675 None:intergenic 35.0%
! TAAGCAAGTTTTTACGCTGA+CGG - chr3.1:58585267-58585286 MS.gene67439:intron 35.0%
! TGAGCTCAAGTACTTTTCTA+TGG + chr3.1:58588761-58588780 None:intergenic 35.0%
! TGTTTTATGGATGCAATAGG+AGG - chr3.1:58587273-58587292 MS.gene67439:CDS 35.0%
! TTGAGGTTAATGCTTTGTTG+GGG + chr3.1:58584655-58584674 None:intergenic 35.0%
! TTGCCATTTCTGTGTTTCAT+TGG + chr3.1:58585446-58585465 None:intergenic 35.0%
! TTTAACTGGTTCAAATCCCA+CGG + chr3.1:58587899-58587918 None:intergenic 35.0%
!! AAGAGTGTCTCTATGTAAGT+AGG + chr3.1:58588513-58588532 None:intergenic 35.0%
!! AATGTTTTAGATTCGTTCCG+CGG - chr3.1:58587608-58587627 MS.gene67439:intron 35.0%
!! TACTGCTTAACCTTTTGGAA+TGG - chr3.1:58588191-58588210 MS.gene67439:intron 35.0%
!! TATTTCCATGTTGACTCTAC+CGG + chr3.1:58587368-58587387 None:intergenic 35.0%
!! TTGTGCTTGTGTTGACTATT+GGG - chr3.1:58586420-58586439 MS.gene67439:intron 35.0%
!! TTTTTGAGCGGTTCTTAACA+AGG + chr3.1:58586294-58586313 None:intergenic 35.0%
!!! GCAGATTTTGATTTTGGATG+AGG - chr3.1:58585746-58585765 MS.gene67439:intron 35.0%
!!! GGAGTTCTCTTTGGTTTTTT+AGG + chr3.1:58589411-58589430 None:intergenic 35.0%
!!! GTGTGTGCAGATTTTGATTT+TGG - chr3.1:58585740-58585759 MS.gene67439:intron 35.0%
AAAAGCCGAGAATAAACCTC+GGG + chr3.1:58587228-58587247 None:intergenic 40.0%
AAGAGTTGACGCAAGAATAC+CGG - chr3.1:58589502-58589521 MS.gene67439:CDS 40.0%
AAGTGAGAAGGTTCTTGTCA+TGG + chr3.1:58588547-58588566 None:intergenic 40.0%
AAGTGGAATGACGAAAGCTA+GGG + chr3.1:58584837-58584856 None:intergenic 40.0%
AATAGGAGGATCCCTTGTTA+TGG - chr3.1:58587287-58587306 MS.gene67439:intron 40.0%
AATGTGTTCGTACATAGGGT+TGG - chr3.1:58586964-58586983 MS.gene67439:intron 40.0%
ACCCAAATGTGTTCGTACAT+AGG - chr3.1:58586959-58586978 MS.gene67439:intron 40.0%
ACCCTATGTACGAACACATT+TGG + chr3.1:58586964-58586983 None:intergenic 40.0%
AGCTCACGAATGAGCTTATT+AGG - chr3.1:58588309-58588328 MS.gene67439:CDS 40.0%
AGGAAATCTACAAGCTGTGA+CGG + chr3.1:58586274-58586293 None:intergenic 40.0%
AGTGTGTTCCTATTGGATGT+CGG - chr3.1:58585364-58585383 MS.gene67439:intron 40.0%
ATTCTCTGCTACTCAAACTC+AGG - chr3.1:58585851-58585870 MS.gene67439:intron 40.0%
ATTGCAACTTCCTTTAGTGC+CGG - chr3.1:58587849-58587868 MS.gene67439:intron 40.0%
CCCAAATGTGTTCGTACATA+GGG - chr3.1:58586960-58586979 MS.gene67439:intron 40.0%
CCCTATGTACGAACACATTT+GGG + chr3.1:58586963-58586982 None:intergenic 40.0%
CTGCTTCATCTTTCCATGAA+GGG + chr3.1:58586494-58586513 None:intergenic 40.0%
GAAATTGGCAAATTAGCCAC+GGG - chr3.1:58587817-58587836 MS.gene67439:intron 40.0%
GATACTTGTGACAACACCTT+TGG + chr3.1:58587039-58587058 None:intergenic 40.0%
GCACATTAGTATGTTGTAGC+AGG + chr3.1:58587396-58587415 None:intergenic 40.0%
GGCATATTCATCCTCATCTA+TGG + chr3.1:58589553-58589572 None:intergenic 40.0%
GTAAGTAGGAGTTTGATCCA+TGG + chr3.1:58588499-58588518 None:intergenic 40.0%
TAAACCTCGGGTATAACATC+AGG + chr3.1:58587216-58587235 None:intergenic 40.0%
TAAGCAGACAGTTGAAGATG+AGG - chr3.1:58589479-58589498 MS.gene67439:CDS 40.0%
TATATAGTCTGTCAGGGAGA+AGG - chr3.1:58586660-58586679 MS.gene67439:intron 40.0%
TCTTTGTAGCTGCAGAGTAA+GGG + chr3.1:58584779-58584798 None:intergenic 40.0%
TGAACTGTTCTCACTCTTAC+AGG - chr3.1:58587782-58587801 MS.gene67439:CDS 40.0%
TGGCTTCTTTCTTTACTTGC+AGG + chr3.1:58589371-58589390 None:intergenic 40.0%
! AAGATACTTTGAAGAGGGGA+GGG - chr3.1:58589005-58589024 MS.gene67439:intron 40.0%
! CTTCTGATTGAAAGCATGTC+TGG + chr3.1:58585533-58585552 None:intergenic 40.0%
! GATGAATATGCCAAGTTGAC+AGG - chr3.1:58589561-58589580 MS.gene67439:CDS 40.0%
! TAATGCTTTGTTGGGGAACT+CGG + chr3.1:58584648-58584667 None:intergenic 40.0%
! TGTTACATTTTCCAAGGGGA+GGG - chr3.1:58588675-58588694 MS.gene67439:intron 40.0%
! TTGTTACATTTTCCAAGGGG+AGG - chr3.1:58588674-58588693 MS.gene67439:intron 40.0%
!! AAATGTATTGATTGGCACGC+CGG - chr3.1:58585149-58585168 MS.gene67439:intron 40.0%
!! ATTTTGCACCGACATCCAAT+AGG + chr3.1:58585375-58585394 None:intergenic 40.0%
!! CTTGTGCTTGTGTTGACTAT+TGG - chr3.1:58586419-58586438 MS.gene67439:intron 40.0%
!! TGTGCTTGTGTTGACTATTG+GGG - chr3.1:58586421-58586440 MS.gene67439:intron 40.0%
!!! AGGTTTTGGCTCTTTCTCTT+TGG + chr3.1:58589391-58589410 None:intergenic 40.0%
AACACATTTGGGTCTTGAGG+AGG + chr3.1:58586952-58586971 None:intergenic 45.0%
AAGCCAGTTCTTCGAAGCTT+AGG + chr3.1:58585831-58585850 None:intergenic 45.0%
AAGTACTTGAGCTCAGCAGT+TGG - chr3.1:58588766-58588785 MS.gene67439:intron 45.0%
ACCTCAATGTGAAGACCTGA+AGG + chr3.1:58585993-58586012 None:intergenic 45.0%
ACCTTCAGGTCTTCACATTG+AGG - chr3.1:58585989-58586008 MS.gene67439:intron 45.0%
ACGAACACATTTGGGTCTTG+AGG + chr3.1:58586955-58586974 None:intergenic 45.0%
ACTGTTCTCACTCTTACAGG+TGG - chr3.1:58587785-58587804 MS.gene67439:CDS 45.0%
AGATCGTGATGTCATGGAGA+AGG - chr3.1:58587638-58587657 MS.gene67439:intron 45.0%
AGGATTCCTCAATCCTGCTT+TGG + chr3.1:58585892-58585911 None:intergenic 45.0%
AGGATTGAGGAATCCTGTGA+GGG - chr3.1:58585896-58585915 MS.gene67439:intron 45.0%
AGTTTACTGGCATGCCACAT+AGG + chr3.1:58586020-58586039 None:intergenic 45.0%
CAAGTGGAATGACGAAAGCT+AGG + chr3.1:58584838-58584857 None:intergenic 45.0%
CACTTGTCGAAATTCTTCGC+CGG - chr3.1:58584852-58584871 MS.gene67439:CDS 45.0%
CCTAACAGCTTGAAGTGAGA+AGG + chr3.1:58588559-58588578 None:intergenic 45.0%
CCTGCTTCATCTTTCCATGA+AGG + chr3.1:58586495-58586514 None:intergenic 45.0%
CCTTCATGGAAAGATGAAGC+AGG - chr3.1:58586492-58586511 MS.gene67439:intron 45.0%
CCTTCTCACTTCAAGCTGTT+AGG - chr3.1:58588556-58588575 MS.gene67439:intron 45.0%
CCTTTCAAAACAGAAAGGCG+AGG + chr3.1:58586457-58586476 None:intergenic 45.0%
CTTGATTGAGGGATTATGGG+TGG - chr3.1:58589069-58589088 MS.gene67439:CDS 45.0%
CTTGCAGTACTTGGAATGTG+AGG - chr3.1:58586237-58586256 MS.gene67439:intron 45.0%
CTTTCCATGAAGGGAGATCA+AGG + chr3.1:58586485-58586504 None:intergenic 45.0%
CTTTGTAGCTGCAGAGTAAG+GGG + chr3.1:58584778-58584797 None:intergenic 45.0%
GAAGAAAGGGACCATAGATG+AGG - chr3.1:58589539-58589558 MS.gene67439:CDS 45.0%
GAGCACATTCTCTCTTGAAG+AGG + chr3.1:58587183-58587202 None:intergenic 45.0%
GAGTCTTCAAAGACACCTTC+AGG - chr3.1:58585975-58585994 MS.gene67439:intron 45.0%
GATCAGCCATTCAGCCTATA+AGG + chr3.1:58587425-58587444 None:intergenic 45.0%
GATCGTGATGTCATGGAGAA+GGG - chr3.1:58587639-58587658 MS.gene67439:intron 45.0%
GGTACTTCAGGAGTTCTCTT+TGG + chr3.1:58589420-58589439 None:intergenic 45.0%
GTATTCCGGTAGAGTCAACA+TGG - chr3.1:58587360-58587379 MS.gene67439:intron 45.0%
GTCTGTGAGAGCTTGAAGAA+CGG + chr3.1:58584714-58584733 None:intergenic 45.0%
GTCTTTGTAGCTGCAGAGTA+AGG + chr3.1:58584780-58584799 None:intergenic 45.0%
GTTTGCTTTCTCATGGCAGT+AGG + chr3.1:58589441-58589460 None:intergenic 45.0%
TCACAAAGAAGAACTGGGAC+TGG + chr3.1:58587527-58587546 None:intergenic 45.0%
TCTGTGAGAGCTTGAAGAAC+GGG + chr3.1:58584713-58584732 None:intergenic 45.0%
TCTTGAGGAGGATCATACTG+TGG + chr3.1:58586940-58586959 None:intergenic 45.0%
TGCACTATACAGTCTACACC+AGG + chr3.1:58586760-58586779 None:intergenic 45.0%
TGGTGTAGACTGTATAGTGC+AGG - chr3.1:58586759-58586778 MS.gene67439:intron 45.0%
TTCTCCTTGATCTCCCTTCA+TGG - chr3.1:58586478-58586497 MS.gene67439:intron 45.0%
TTGCCTAAGCTTCGAAGAAC+TGG - chr3.1:58585825-58585844 MS.gene67439:intron 45.0%
! AATGCTACTTGTTGGTGGAG+TGG - chr3.1:58585086-58585105 MS.gene67439:intron 45.0%
! AGTGAGTGGCGTTTTATCTC+CGG + chr3.1:58587871-58587890 None:intergenic 45.0%
! ATCACGATCTTTTGTTGCCG+CGG + chr3.1:58587628-58587647 None:intergenic 45.0%
! CAAGATACTTTGAAGAGGGG+AGG - chr3.1:58589004-58589023 MS.gene67439:intron 45.0%
! CGTTTTATCTCCGGCACTAA+AGG + chr3.1:58587862-58587881 None:intergenic 45.0%
! GACGAAAGCTAGGGTTTTAC+CGG + chr3.1:58584828-58584847 None:intergenic 45.0%
! GGGGTTACTGCTTAACCTTT+TGG - chr3.1:58588186-58588205 MS.gene67439:intron 45.0%
! TTTTACGCTGACGGCCAATA+AGG - chr3.1:58585276-58585295 MS.gene67439:intron 45.0%
!! AATGTATTGATTGGCACGCC+GGG - chr3.1:58585150-58585169 MS.gene67439:intron 45.0%
!! CCTCGCCTTTCTGTTTTGAA+AGG - chr3.1:58586454-58586473 MS.gene67439:intron 45.0%
!! CTTTCAATCAGAAGTGTCGG+TGG - chr3.1:58585539-58585558 MS.gene67439:intron 45.0%
!! CTTTTCGAGCTTGCAGTACT+TGG - chr3.1:58586228-58586247 MS.gene67439:intron 45.0%
!! GTAATGTAAGGTGTCGGTGT+CGG - chr3.1:58585494-58585513 MS.gene67439:intron 45.0%
!! TAATGTAAGGTGTCGGTGTC+GGG - chr3.1:58585495-58585514 MS.gene67439:intron 45.0%
!! TGGATTATAGTAAGAGCGCC+AGG + chr3.1:58586129-58586148 None:intergenic 45.0%
!! TTGTGTTGACTATTGGGGAG+TGG - chr3.1:58586426-58586445 MS.gene67439:intron 45.0%
AGCTTGCCAAAGCAGGATTG+AGG - chr3.1:58585883-58585902 MS.gene67439:intron 50.0%
ATCCTCTGTGCCTGTCAACT+TGG + chr3.1:58589574-58589593 None:intergenic 50.0%
ATGTCATGGAGAAGGGAGTC+AGG - chr3.1:58587646-58587665 MS.gene67439:intron 50.0%
CAGGATTGAGGAATCCTGTG+AGG - chr3.1:58585895-58585914 MS.gene67439:intron 50.0%
CGGCGAAGAATTTCGACAAG+TGG + chr3.1:58584854-58584873 None:intergenic 50.0%
CTCATGGCAGTAGGTACTTC+AGG + chr3.1:58589432-58589451 None:intergenic 50.0%
GAATTGGAATGAGGAGAGGG+AGG + chr3.1:58584908-58584927 None:intergenic 50.0%
TAGGTCGGAGAAACGAGTTG+AGG + chr3.1:58584672-58584691 None:intergenic 50.0%
TGCACCTGATGTTATACCCG+AGG - chr3.1:58587209-58587228 MS.gene67439:CDS 50.0%
TGCGACGCTAATTCCCTTGT+AGG + chr3.1:58585015-58585034 None:intergenic 50.0%
TGCTACTCAAACTCAGGCTG+TGG - chr3.1:58585857-58585876 MS.gene67439:intron 50.0%
TGTCATGGAGAAGGGAGTCA+GGG - chr3.1:58587647-58587666 MS.gene67439:intron 50.0%
TTCATCAATTGCCCTCCCCT+TGG + chr3.1:58588689-58588708 None:intergenic 50.0%
TTCCAATCCCAAACCTCACC+AGG - chr3.1:58584880-58584899 MS.gene67439:CDS 50.0%
TTGCAATAAGCCATGTCCCG+TGG + chr3.1:58587836-58587855 None:intergenic 50.0%
TTTAGCAGCGAGTCTTTGCC+TGG - chr3.1:58586108-58586127 MS.gene67439:intron 50.0%
! AACCTGGTGAGGTTTGGGAT+TGG + chr3.1:58584885-58584904 None:intergenic 50.0%
! AACTGGTTCAAATCCCACGG+TGG + chr3.1:58587896-58587915 None:intergenic 50.0%
! ACTTTGAAGAGGGGAGGGAT+TGG - chr3.1:58589010-58589029 MS.gene67439:intron 50.0%
! AGCTAGGGTTTTACCGGAAC+CGG + chr3.1:58584822-58584841 None:intergenic 50.0%
! CTTTGAAGAGGGGAGGGATT+GGG - chr3.1:58589011-58589030 MS.gene67439:intron 50.0%
! GAGAGCTTGAAGAACGGGTT+CGG + chr3.1:58584708-58584727 None:intergenic 50.0%
! GTTCGGAGAGTGGTGGTTTT+AGG + chr3.1:58584691-58584710 None:intergenic 50.0%
!! ATAGGGTTGGTCGAACTGCT+CGG - chr3.1:58586977-58586996 MS.gene67439:intron 50.0%
!! ATGTATTGATTGGCACGCCG+GGG - chr3.1:58585151-58585170 MS.gene67439:intron 50.0%
!! GTTTGGGATTGGAAGCGTTC+CGG + chr3.1:58584874-58584893 None:intergenic 50.0%
!!! GGAGAGTGGTGGTTTTAGGT+CGG + chr3.1:58584687-58584706 None:intergenic 50.0%
AATGAGGAGAGGGAGGAACC+TGG + chr3.1:58584901-58584920 None:intergenic 55.0%
ACTGCTCGGCTGGGTAAACA+AGG - chr3.1:58586991-58587010 MS.gene67439:intron 55.0%
ATCCCACGGTGGATAGTGAG+TGG + chr3.1:58587885-58587904 None:intergenic 55.0%
CTGCTCGGCTGGGTAAACAA+GGG - chr3.1:58586992-58587011 MS.gene67439:intron 55.0%
CTTGAGCTCAGCAGTTGGCT+CGG - chr3.1:58588771-58588790 MS.gene67439:intron 55.0%
GCACGTGGACTTGACATACC+TGG - chr3.1:58586739-58586758 MS.gene67439:intron 55.0%
GCTCGAACTTCAACCCTCAC+AGG + chr3.1:58585912-58585931 None:intergenic 55.0%
GCTGCAGAGTAAGGGGATAG+TGG + chr3.1:58584771-58584790 None:intergenic 55.0%
GGAGGAACCTGGTGAGGTTT+GGG + chr3.1:58584890-58584909 None:intergenic 55.0%
GGCAAATTAGCCACGGGACA+TGG - chr3.1:58587823-58587842 MS.gene67439:intron 55.0%
GTGGAAGAGCTTGCCAAAGC+AGG - chr3.1:58585876-58585895 MS.gene67439:intron 55.0%
TGTACGGATGTTGCAGCACG+TGG - chr3.1:58586724-58586743 MS.gene67439:intron 55.0%
! GCAGAGTAAGGGGATAGTGG+CGG + chr3.1:58584768-58584787 None:intergenic 55.0%
! TAGGGTTTTACCGGAACCGG+TGG + chr3.1:58584819-58584838 None:intergenic 55.0%
! TGAAGAACGGGTTCGGAGAG+TGG + chr3.1:58584701-58584720 None:intergenic 55.0%
! TGCCAAGTTGACAGGCACAG+AGG - chr3.1:58589569-58589588 MS.gene67439:CDS 55.0%
! TTGAGCTCAGCAGTTGGCTC+GGG - chr3.1:58588772-58588791 MS.gene67439:intron 55.0%
!! GTGTCGGTGTCGGGCATTAT+TGG - chr3.1:58585504-58585523 MS.gene67439:intron 55.0%
ACGCCACTCACTATCCACCG+TGG - chr3.1:58587879-58587898 MS.gene67439:intron 60.0%
CGCCACTCACTATCCACCGT+GGG - chr3.1:58587880-58587899 MS.gene67439:intron 60.0%
GGGAGGAACCTGGTGAGGTT+TGG + chr3.1:58584891-58584910 None:intergenic 60.0%
GTTGGTCGAACTGCTCGGCT+GGG - chr3.1:58586982-58587001 MS.gene67439:intron 60.0%
! AGAACGGGTTCGGAGAGTGG+TGG + chr3.1:58584698-58584717 None:intergenic 60.0%
! GATAGTGGCGGCTTGAACGG+GGG + chr3.1:58584756-58584775 None:intergenic 60.0%
! GGATAGTGGCGGCTTGAACG+GGG + chr3.1:58584757-58584776 None:intergenic 60.0%
! GGGATAGTGGCGGCTTGAAC+GGG + chr3.1:58584758-58584777 None:intergenic 60.0%
! GGGGATAGTGGCGGCTTGAA+CGG + chr3.1:58584759-58584778 None:intergenic 60.0%
! GGTTTTACCGGAACCGGTGG+CGG + chr3.1:58584816-58584835 None:intergenic 60.0%
GGAGAGGGAGGAACCTGGTG+AGG + chr3.1:58584896-58584915 None:intergenic 65.0%
! GGTTGGTCGAACTGCTCGGC+TGG - chr3.1:58586981-58587000 MS.gene67439:intron 65.0%
! GGAACCGGTGGCGGCATCGA+CGG + chr3.1:58584807-58584826 None:intergenic 70.0%
!! GTCGATGCCGCCACCGGTTC+CGG - chr3.1:58584806-58584825 MS.gene67439:CDS 70.0%
GTCGCCGTCGATGCCGCCAC+CGG - chr3.1:58584800-58584819 MS.gene67439:CDS 75.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 58584638 58589602 58584638 ID=MS.gene67439
chr3.1 mRNA 58584638 58589602 58584638 ID=MS.gene67439.t1;Parent=MS.gene67439
chr3.1 exon 58589339 58589602 58589339 ID=MS.gene67439.t1.exon1;Parent=MS.gene67439.t1
chr3.1 CDS 58589339 58589602 58589339 ID=cds.MS.gene67439.t1;Parent=MS.gene67439.t1
chr3.1 exon 58589013 58589249 58589013 ID=MS.gene67439.t1.exon2;Parent=MS.gene67439.t1
chr3.1 CDS 58589013 58589249 58589013 ID=cds.MS.gene67439.t1;Parent=MS.gene67439.t1
chr3.1 exon 58588230 58588490 58588230 ID=MS.gene67439.t1.exon3;Parent=MS.gene67439.t1
chr3.1 CDS 58588230 58588490 58588230 ID=cds.MS.gene67439.t1;Parent=MS.gene67439.t1
chr3.1 exon 58587917 58587996 58587917 ID=MS.gene67439.t1.exon4;Parent=MS.gene67439.t1
chr3.1 CDS 58587917 58587996 58587917 ID=cds.MS.gene67439.t1;Parent=MS.gene67439.t1
chr3.1 exon 58587727 58587832 58587727 ID=MS.gene67439.t1.exon5;Parent=MS.gene67439.t1
chr3.1 CDS 58587727 58587832 58587727 ID=cds.MS.gene67439.t1;Parent=MS.gene67439.t1
chr3.1 exon 58587460 58587573 58587460 ID=MS.gene67439.t1.exon6;Parent=MS.gene67439.t1
chr3.1 CDS 58587460 58587573 58587460 ID=cds.MS.gene67439.t1;Parent=MS.gene67439.t1
chr3.1 exon 58587199 58587297 58587199 ID=MS.gene67439.t1.exon7;Parent=MS.gene67439.t1
chr3.1 CDS 58587199 58587297 58587199 ID=cds.MS.gene67439.t1;Parent=MS.gene67439.t1
chr3.1 exon 58587010 58587099 58587010 ID=MS.gene67439.t1.exon8;Parent=MS.gene67439.t1
chr3.1 CDS 58587010 58587099 58587010 ID=cds.MS.gene67439.t1;Parent=MS.gene67439.t1
chr3.1 exon 58586516 58586622 58586516 ID=MS.gene67439.t1.exon9;Parent=MS.gene67439.t1
chr3.1 CDS 58586516 58586622 58586516 ID=cds.MS.gene67439.t1;Parent=MS.gene67439.t1
chr3.1 exon 58586293 58586436 58586293 ID=MS.gene67439.t1.exon10;Parent=MS.gene67439.t1
chr3.1 CDS 58586293 58586436 58586293 ID=cds.MS.gene67439.t1;Parent=MS.gene67439.t1
chr3.1 exon 58584638 58584905 58584638 ID=MS.gene67439.t1.exon11;Parent=MS.gene67439.t1
chr3.1 CDS 58584638 58584905 58584638 ID=cds.MS.gene67439.t1;Parent=MS.gene67439.t1
Gene Sequence

>MS.gene67439

ATGGACTCCGAGTTCCCCAACAAAGCATTAACCTCAACTCGTTTCTCCGACCTAAAACCACCACTCTCCGAACCCGTTCTTCAAGCTCTCACAGACTCAAACTTTGATTTCTGCACCCCCGTTCAAGCCGCCACTATCCCCTTACTCTGCAGCTACAAAGACGTCGCCGTCGATGCCGCCACCGGTTCCGGTAAAACCCTAGCTTTCGTCATTCCACTTGTCGAAATTCTTCGCCGGAACGCTTCCAATCCCAAACCTCACCAGGTTCCTCCCTCTCCTCATTCCAATTCAATTAGGTTAATCATTGTAATGTGTCCAATTTATGTGATAATGAAGTGTTTGGTTATTTGTAGGTGCTTGGAGTGATTATATCTCCTACAAGGGAATTAGCGTCGCAAATATATCATGTTGCACAGCCTTTTATTTCGACTTTAGCGAATGTTAAATCAATGCTACTTGTTGGTGGAGTGGAAGTGAAAGCAGATATGAAGAAAATTGAGGAAGAAGGAGCAAATGTATTGATTGGCACGCCGGGGCGATTACATGATATTATGAATCGGATGGATATTTTGGATTTCAAAAGCTTTGAGGTATAAATTTTAGAGAAAATACGAAATGCAGAGATAATGTAAGCAAGTTTTTACGCTGACGGCCAATAAGGATGTAGTAATTGGTAGTTAAGTTATCTTTAAAAAGCGGTTACAAATTAGGCTTAGATGGCAATATAGTGTGTTCCTATTGGATGTCGGTGCAAAATAAATTCACACGGTGCATCCCCATTAAACTCTTATCTTTTACTTTTTTACCAATGAAACACAGAAATGGCAAATAATTTGAGAGAATGACATAATTGAATGTAATGTAAGGTGTCGGTGTCGGGCATTATTGGACACCAGACATGCTTTCAATCAGAAGTGTCGGTGGTACATAGCTAATTATACAAAATACATGCAGATATATGTTCTAGAGAGAATATTTCAGGATTTATTATTTGGTCATGTGGTACAAAATAATATCTATGTCATGTTGTAGCTTCGTGCTTTAAGATTCCTTATATTTGTGGCATTTGGGTATTAATAGGAATAGGATTTTGATTGTAATTGTGTGTGCAGATTTTGATTTTGGATGAGGCTGATAGACTATTAGATATGGGATTCCAGAAGCAGATAAATGCTATCATAACTGAGTTGCCTAAGCTTCGAAGAACTGGCTTATTCTCTGCTACTCAAACTCAGGCTGTGGAAGAGCTTGCCAAAGCAGGATTGAGGAATCCTGTGAGGGTTGAAGTTCGAGCTGAAACAAAAACAGCAAATGATTCTGCTGCATCAAAGAAAACAGAGTCTTCAAAGACACCTTCAGGTCTTCACATTGAGGTATTACCTATGTGGCATGCCAGTAAACTAGAGATTAGATGTGTGGTGATTTCATTTTTTCACTTTAGTAGTAGAATCCCTTCATTTTTTTGGTTAATTTAGCAGCGAGTCTTTGCCTGGCGCTCTTACTATAATCCATATAAGATGTTTCATGTATTACTAATAGGTGCATAAAACAGTTTATACTCATTTTTTCTTATACTAATCCTTTTCTTTTCTTTTCGAGCTTGCAGTACTTGGAATGTGAGGCAGATAAGAAACCGTCACAGCTTGTAGATTTCCTTGTTAAGAACCGCTCAAAAAAAATTATAATGTGAGATACACAATGTTAATAATGAATAGTATGATCTGTGTAGTAGATGAATAGCTTATCATACTCAAAACTTCATTTTTGCAGATATTTCATGACTTGTGCTTGTGTTGACTATTGGGGAGTGGTTCTTCCTCGCCTTTCTGTTTTGAAAGGCTTCTCCTTGATCTCCCTTCATGGAAAGATGAAGCAGGTATAAGTTTGACTATTAGCAACCAAGCATTTGTCAGTTTTGAAATTAAATGTATTATTATTCTTTTATATCAGCATTGTATTTCTTATCACCCATTATTTTTGTCGAACTTTACTGTTTGTATACTTATTGGCTATTTATTTTTCTATATAGTCTGTCAGGGAGAAGGCACTAACTTCATTTACATCCCTTTCAAATGGAATTCTTTTGTGTACGGATGTTGCAGCACGTGGACTTGACATACCTGGTGTAGACTGTATAGTGCAGGTAGCTTTGTGACAATGTAGATGCTACTGTCTGTTAAACATTGTGTTTCATCTTCTCTCTGTTGTCAAATTGAAAAATAAACCGTGGTTCAAATATTTCTTCATATTTATCACTGGAACACTTATAGAAAATGCAATTAATGCATCCTCTGTTATTCCACAGTATGATCCTCCTCAAGACCCAAATGTGTTCGTACATAGGGTTGGTCGAACTGCTCGGCTGGGTAAACAAGGGCATGCTGTTGTCTTCTTATTACCAAAGGTGTTGTCACAAGTATCATGTTCTAGTGCTTTTTTATAATATACATAAGATTCTTTAAGCTTATCTTTTTATGGTAAATTAATCTATGTCAATGTGTAGGAGGAATCATATGTAGAATTCTTGCGTATACGAAGAGTTCCTCTTCAAGAGAGAATGTGCTCCGACAATGCACCTGATGTTATACCCGAGGTTTATTCTCGGCTTTTATTATCTTAATTTACTGTGTTGTCATGTTTTATGGATGCAATAGGAGGATCCCTTGTTATGGTTGTCAATCGATATTAAAAATAGTTATTAGATATGTGAACTACCGTAATAGTATTCCGGTAGAGTCAACATGGAAATAAATTCCCTGCTACAACATACTAATGTGCTGATTACCTTATAGGCTGAATGGCTGATCTTGATATTACTCCTTCACTGTTAGATTTATTTTTTTTTTTTTTTTTAAGTTTTATTGATTGTCTAGGTAAACACGGCTACCAGTCCCAGTTCTTCTTTGTGAACATGAAAATGTATATGAAAAGCTAACCCTTTCAATTCCCTGATAACAAAATTATGATCAAAATGTTTTAGATTCGTTCCGCGGCAACAAAAGATCGTGATGTCATGGAGAAGGGAGTCAGGGCATTTGTTTCTTACATTCGCGCTTATAAAGAGCATCACTGCTCTTATATTTTCAGGTGAGTAATGTTGACATATGATTTTGCTGTCACTCGATGATTAAACATCATTATCGTTGAACTGTTCTCACTCTTACAGGTGGAAAGAACTTGAAATTGGCAAATTAGCCACGGGACATGGCTTATTGCAACTTCCTTTAGTGCCGGAGATAAAACGCCACTCACTATCCACCGTGGGATTTGAACCAGTTAAAGATATCAATTTCGAGGAGATTAGATTCAGGTAAAAACATTTTAACAGTAACCTTTCTAATTGTCAATATTCATATCTCTGAACAGCTTAAGCTGATAGATATATAAGAAAAACATCTTGTAATATTTTCTCATCATCTTGAATTATCTCATAGACTTAGTTTCTTATCTTAGAGTATCCCGTGAGATTAGCTTCTATATTACTTGGTTATTATCATGATTTGTTTCCCTGTTCAATTAGGATTAGCAGTCTTGTCTCCCTATAAATAGGGGTTACTGCTTAACCTTTTGGAATGGTCTGATTATCATCAAATCTTCAATCATAATTATATTCTACTCTTAATTCTTTTTCTCATCTCATTATCTAAAACCCATATCTTCAACAAGATGAAAGCTCACGAATGAGCTTATTAGGTTGCATTGTCCATATCTTCTAACAAGATAAAGGCTCATGAATGAGCTTATTATATCTAGCACGCGGTCCCGAGAGCTTGTTATGCTTAAAATATGGACAATGCAAAGGGCCACCTAAACTTGTGCTGAATTTTAATATTTTTTTAATTTTGAAAATAGAAGTGGCCATGGATCAAACTCCTACTTACATAGAGACACTCTTAAACGTGAATACCATGACAAGAACCTTCTCACTTCAAGCTGTTAGGTGAAACTCATTAATGGTTGTAAACTTTACAACCATCAGATGTACAAAAGTTATATTGGGTATGAAAAGCATATATTGCTTACATCTGTCTTATTATTGTTACATTTTCCAAGGGGAGGGCAATTGATGAATGATACTTTATTTGATTTGAAGCTCACTAGTTCAAATAATCAATTACAACCATAGAAAAGTACTTGAGCTCAGCAGTTGGCTCGGGCTACATTATTTTTGTGATATTTATTAATTTTATAACATTATAAATTTATAATTAAAACATCAAAAATTTAATTGTATAATTTAATATAATTCAAATTGAGCTTCAGATTGGGGTATGAAAATCAAAATTGAGTTGGAGCTTGAGCTTCTTTTTCATGCTTCGATAAAAGTTATCCCTATTTTTTTAGTTATAGGTAGAAACTTATTCTTCAAGATACTTTGAAGAGGGGAGGGATTGGGAAGCTGTTCTTTTGTATACCAAGTTCTTTGTTGATCTTGATTGAGGGATTATGGGTGGCAACTGAGACAAGATTTACAATTAAATGTAACATGAATATCCTATATTCGTGTTGTCTTTCGATTGTCCTTCTAACTTATTCCAAGTACACTTTTTAACTCGGTCAAAAAGCATCATGTAGTTGTCTCATTTGAGTTTTGATCAATAAAATGAGGTATTTTTTTATTAAAAAAAAAACTTCTCAGTACACTTTTGCTTTGTTCTTGCAAACATGCTGCTGACTTAAAACTTCAAATTTTATAGGGATAAATCAAGAGAGAAACAAAGGAAGAAAAACCTGCAAGTAAAGAAAGAAGCCAAAGAGAAAGAGCCAAAACCTAAAAAACCAAAGAGAACTCCTGAAGTACCTACTGCCATGAGAAAGCAAACAGCTAAACAAAGACGTGCTAAGCAGACAGTTGAAGATGAGGAAGAGTTGACGCAAGAATACCGGTTGTTGAAGAAATTGAAGAAAGGGACCATAGATGAGGATGAATATGCCAAGTTGACAGGCACAGAGGATTTACTTTGA
Protein sequence

>MS.gene67439.t1

MDSEFPNKALTSTRFSDLKPPLSEPVLQALTDSNFDFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVIPLVEILRRNASNPKPHQVLGVIISPTRELASQIYHVAQPFISTLANVKSMLLVGGVEVKADMKKIEEEGANVLIGTPGRLHDIMNRMDILDFKSFEILILDEADRLLDMGFQKQINAIITELPKLRRTGLFSATQTQAVEELAKAGLRNPVRVEVRAETKTANDSAASKKTESSKTPSGLHIEYLECEADKKPSQLVDFLVKNRSKKIIIYFMTCACVDYWGVVLPRLSVLKGFSLISLHGKMKQSVREKALTSFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFVHRVGRTARLGKQGHAVVFLLPKEESYVEFLRIRRVPLQERMCSDNAPDVIPEIRSAATKDRDVMEKGVRAFVSYIRAYKEHHCSYIFRWKELEIGKLATGHGLLQLPLVPEIKRHSLSTVGFEPVKDINFEEIRFRDKSREKQRKKNLQVKKEAKEKEPKPKKPKRTPEVPTAMRKQTAKQRRAKQTVEDEEELTQEYRLLKKLKKGTIDEDEYAKLTGTEDLL