AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene67635

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene67635.t1 MTR_2g450160 95.662 461 20 0 1 461 351 811 0.0 900
MS.gene67635.t1 MTR_4g131380 73.753 461 118 2 1 461 199 656 0.0 693
MS.gene67635.t1 MTR_5g094230 47.732 463 237 5 6 463 196 658 1.89e-148 439
MS.gene67635.t1 MTR_5g094230 26.582 316 190 13 164 456 38 334 1.94e-14 76.3
MS.gene67635.t1 MTR_5g094230 47.629 464 238 5 6 464 196 659 7.96e-147 437
MS.gene67635.t1 MTR_5g094230 26.582 316 190 13 164 456 38 334 1.29e-14 77.0
MS.gene67635.t1 MTR_3g055610 47.598 458 233 5 7 460 197 651 3.15e-139 417
MS.gene67635.t1 MTR_3g055610 25.155 322 200 10 158 456 31 334 7.78e-17 84.0
MS.gene67635.t1 MTR_7g050345 61.039 77 30 0 167 243 16 92 5.03e-25 99.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene67635.t1 AT5G58170 61.123 463 177 3 2 461 192 654 0.0 593
MS.gene67635.t1 AT5G58050 61.339 463 176 3 2 461 192 654 0.0 593
MS.gene67635.t1 AT1G66970 48.478 460 231 6 7 460 14 473 3.32e-148 435
MS.gene67635.t1 AT1G66970 48.478 460 231 6 7 460 208 667 1.00e-145 435
MS.gene67635.t1 AT1G66970 25.157 318 190 13 164 456 51 345 1.15e-11 67.8
MS.gene67635.t1 AT1G66970 48.478 460 231 6 7 460 230 689 2.52e-145 434
MS.gene67635.t1 AT1G66970 25.157 318 190 13 164 456 73 367 1.31e-11 67.4
MS.gene67635.t1 AT5G55480 46.855 461 237 7 7 460 208 667 4.46e-141 423
MS.gene67635.t1 AT4G26690 45.726 468 244 6 7 464 202 669 1.70e-140 421
MS.gene67635.t1 AT1G66980 46.957 460 237 7 7 460 194 652 6.48e-133 411
MS.gene67635.t1 AT1G66980 46.957 460 237 7 7 460 211 669 1.33e-132 410
MS.gene67635.t1 AT1G66980 46.957 460 237 7 7 460 211 669 1.50e-132 411
MS.gene67635.t1 AT3G20520 44.915 472 247 9 6 464 177 648 2.14e-130 394
MS.gene67635.t1 AT3G20520 27.108 332 179 17 165 472 35 327 5.25e-14 75.1
MS.gene67635.t1 AT1G66980 44.376 489 236 8 7 460 211 698 2.19e-128 400
MS.gene67635.t1 AT5G08030 24.776 335 208 10 158 460 39 361 2.65e-19 89.7
MS.gene67635.t1 AT5G08030 24.776 335 208 10 158 460 54 376 3.32e-19 89.7
MS.gene67635.t1 AT1G74210 24.478 335 209 10 158 460 39 361 8.48e-17 82.4

Find 83 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACTCTTTGGTTGAATTTC+TGG 0.000898 2.2:-34600792 None:intergenic
TAAGTAGCAATCTCCATATT+AGG 0.207386 2.2:-34601865 None:intergenic
AATGAGAAAATTCCACTCTT+TGG 0.247857 2.2:-34600804 None:intergenic
TCTTGTTTGCTGGATTTCTT+TGG 0.249901 2.2:-34600985 None:intergenic
TATGAATGAGTTCATGTCTT+TGG 0.260800 2.2:+34601822 MS.gene67635:CDS
AAGTATTTGTCTGGTTTAAC+TGG 0.262375 2.2:-34599848 None:intergenic
GTATCTGGTTCTTTGCTAAC+AGG 0.306226 2.2:+34601739 MS.gene67635:CDS
ACTGGCCATATATATTCTTT+TGG 0.307855 2.2:-34599830 None:intergenic
AAACAAAGTCTATCTTATAA+AGG 0.312447 2.2:-34599631 None:intergenic
GCTCAAATTTCTAGCCCTTT+TGG 0.325123 2.2:+34600953 MS.gene67635:intron
CCCCTTTCACTATAAATTGT+AGG 0.329991 2.2:-34599991 None:intergenic
TGGTGCCAAAAGAATATATA+TGG 0.331064 2.2:+34599825 MS.gene67635:CDS
ATCCATTCTGCCATGGTTGA+TGG 0.336711 2.2:+34601889 MS.gene67635:CDS
TTACCACTATTCTTGTTTGC+TGG 0.340197 2.2:-34600995 None:intergenic
GTCAAAAGTTGCATTACTTA+AGG 0.366623 2.2:-34601527 None:intergenic
CTATATGGCTGCTTTGTTGT+GGG 0.369694 2.2:-34599752 None:intergenic
AGAAATTGAAAGACAACCTT+AGG 0.374974 2.2:-34599710 None:intergenic
TCCTTCACAATGGTGCTATA+TGG 0.376012 2.2:-34599767 None:intergenic
AGTCCTTGTTTGTGTGCATC+AGG 0.378410 2.2:-34599893 None:intergenic
TTACTGGTCAGACCCTAATA+TGG 0.390114 2.2:+34601852 MS.gene67635:CDS
TTTGTTTCATCTCCAGAGAT+TGG 0.391315 2.2:+34599647 MS.gene67635:CDS
GTTGTCTTTCAATTTCTTAA+CGG 0.394723 2.2:+34599716 MS.gene67635:CDS
GGAGGCCCCAAGTATTTGTC+TGG 0.396549 2.2:-34599857 None:intergenic
GCTTTGATCATAAGCAATAA+TGG 0.400317 2.2:+34600585 MS.gene67635:CDS
AGATGAAATGTCTTTATACT+TGG 0.406957 2.2:-34601602 None:intergenic
GTCATATGCATCAGGCATAA+TGG 0.418338 2.2:+34599805 MS.gene67635:CDS
AGGAATGACTAATGTTGTTA+AGG 0.419508 2.2:+34601759 MS.gene67635:CDS
AAGTAGCAATCTCCATATTA+GGG 0.425048 2.2:-34601864 None:intergenic
CTTAAACACTGCAGACCTAA+TGG 0.428097 2.2:+34600722 MS.gene67635:CDS
AACAAAGTCTATCTTATAAA+GGG 0.431074 2.2:-34599630 None:intergenic
GCTTACCTTGCTTCAAAGAA+AGG 0.433499 2.2:+34601475 MS.gene67635:CDS
TAGCAGTTGTATCTGCCATT+AGG 0.437145 2.2:-34600737 None:intergenic
CTTTGGAAGCTACTGCCAAA+AGG 0.438349 2.2:-34600968 None:intergenic
CTTCTTAAGAAACCAATCTC+TGG 0.455413 2.2:-34599659 None:intergenic
GCTATATGGCTGCTTTGTTG+TGG 0.458695 2.2:-34599753 None:intergenic
AAGAAAGGCCTTGACATTGT+TGG 0.458829 2.2:+34601490 MS.gene67635:CDS
ACCTACAATTTATAGTGAAA+GGG 0.459785 2.2:+34599990 MS.gene67635:CDS
GGTTTCTTAAGAAGCATCAA+TGG 0.464931 2.2:+34599668 MS.gene67635:CDS
TCAGCGGCATCAAATTCAAT+AGG 0.470757 2.2:+34600046 MS.gene67635:CDS
TACCTACAATTTATAGTGAA+AGG 0.479837 2.2:+34599989 MS.gene67635:CDS
AGATATCTATTTGTAGTGGC+TGG 0.484124 2.2:-34601928 None:intergenic
GTTTCTTAAGAAGCATCAAT+GGG 0.487314 2.2:+34599669 MS.gene67635:CDS
TACTTACATCCATTCTGCCA+TGG 0.490906 2.2:+34601882 MS.gene67635:CDS
GCAATCAAGTCATATGCATC+AGG 0.493380 2.2:+34599797 MS.gene67635:CDS
TTTGGAAGCTACTGCCAAAA+GGG 0.496110 2.2:-34600967 None:intergenic
GTGAAAGGGGAATCTGTTGA+TGG 0.497638 2.2:+34600004 MS.gene67635:CDS
CTCCATCAACCATGGCAGAA+TGG 0.507057 2.2:-34601891 None:intergenic
TTTGGAGTTGGCCAAGGCTA+AGG 0.508106 2.2:+34601039 MS.gene67635:CDS
AATCCAGCAAACAAGAATAG+TGG 0.513779 2.2:+34600992 MS.gene67635:CDS
GGAGCAAGTGGTGTATATCC+AGG 0.514102 2.2:+34600606 MS.gene67635:CDS
GTCTTTATACTTGGATAGCA+CGG 0.520483 2.2:-34601593 None:intergenic
GCCAGTGACTGCCTTAGCCT+TGG 0.521741 2.2:-34601050 None:intergenic
GCCACTACAAATAGATATCT+CGG 0.532965 2.2:+34601931 MS.gene67635:CDS
CAAGGCCTTTCTTTGAAGCA+AGG 0.534600 2.2:-34601480 None:intergenic
ATTGAATTTGATGCCGCTGA+AGG 0.541098 2.2:-34600043 None:intergenic
TCAGTTCAGATGACAAAAGA+TGG 0.542831 2.2:+34600687 MS.gene67635:CDS
GGACTAGAAGTGTATGCTAC+TGG 0.543810 2.2:+34599911 MS.gene67635:CDS
GTTAAACCAGACAAATACTT+GGG 0.548088 2.2:+34599851 MS.gene67635:CDS
GCCAAGGCTAAGGCAGTCAC+TGG 0.551466 2.2:+34601049 MS.gene67635:CDS
AGTTAAACCAGACAAATACT+TGG 0.553227 2.2:+34599850 MS.gene67635:CDS
TATCAGCAAGCAATAGATGA+TGG 0.554850 2.2:+34600645 MS.gene67635:CDS
GCATCAGGTACTAATGTTGT+GGG 0.555653 2.2:-34599878 None:intergenic
TGCATCAGGTACTAATGTTG+TGG 0.558662 2.2:-34599879 None:intergenic
TAAGCAAGATCAGTGGAACC+TGG 0.568945 2.2:-34600624 None:intergenic
GCCATATAGCACCATTGTGA+AGG 0.573039 2.2:+34599766 MS.gene67635:CDS
ATACTTCTTAATTTCATCAA+CGG 0.574668 2.2:-34601677 None:intergenic
TATGGAAGCATTACGTTGCA+AGG 0.577679 2.2:-34600853 None:intergenic
AATTGTAGGTACTCAGCTGT+AGG 0.578925 2.2:-34599977 None:intergenic
ACCGAGATATCTATTTGTAG+TGG 0.581313 2.2:-34601932 None:intergenic
CCTACAATTTATAGTGAAAG+GGG 0.591721 2.2:+34599991 MS.gene67635:CDS
AGTGAACAAGATGAAACCTA+AGG 0.600861 2.2:+34599694 MS.gene67635:CDS
ATAAGCAATAATGGAGCAAG+TGG 0.603321 2.2:+34600594 MS.gene67635:CDS
GGATAGCACGGAGCTATCGT+CGG 0.616080 2.2:-34601581 None:intergenic
CCAGAAATTCAACCAAAGAG+TGG 0.618301 2.2:+34600792 MS.gene67635:CDS
GTACCTGATGCACACAAACA+AGG 0.620547 2.2:+34599890 MS.gene67635:CDS
TCAGGTACTAATGTTGTGGG+AGG 0.658064 2.2:-34599875 None:intergenic
TTACAGCACCAACAATGTCA+AGG 0.673444 2.2:-34601498 None:intergenic
TGCTGCAAGGTCCTTCACAA+TGG 0.687236 2.2:-34599777 None:intergenic
TGTGACTACTCCATCAACCA+TGG 0.695687 2.2:-34601899 None:intergenic
CATATGACTTGATTGCTGCA+AGG 0.707771 2.2:-34599790 None:intergenic
TTAAACCAGACAAATACTTG+GGG 0.716606 2.2:+34599852 MS.gene67635:CDS
GAGTATGAACAAATACTGTG+AGG 0.729526 2.2:-34601798 None:intergenic
TTGCTGATAAGCAAGATCAG+TGG 0.729870 2.2:-34600631 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACAAAATATCTTATTCA+GGG + chr2.2:34601326-34601345 MS.gene67635:intron 15.0%
!! TAACATGAAAAAATATTAGA+AGG + chr2.2:34601282-34601301 MS.gene67635:intron 15.0%
!! AAACAAAGTCTATCTTATAA+AGG - chr2.2:34599634-34599653 None:intergenic 20.0%
!! AACAAAGTCTATCTTATAAA+GGG - chr2.2:34599633-34599652 None:intergenic 20.0%
!! AAGGATAAAAAACAATGTTT+CGG - chr2.2:34601185-34601204 None:intergenic 20.0%
!! ATACTTCTTAATTTCATCAA+CGG - chr2.2:34601680-34601699 None:intergenic 20.0%
!! ATATTTGAACAATGAACTTA+AGG + chr2.2:34600911-34600930 MS.gene67635:intron 20.0%
!! CAACATGAACAAATATTATA+CGG - chr2.2:34601221-34601240 None:intergenic 20.0%
!! GAAAACAAAATATCTTATTC+AGG + chr2.2:34601325-34601344 MS.gene67635:intron 20.0%
!! GTTCATTGTTCAAATATTAA+AGG - chr2.2:34600908-34600927 None:intergenic 20.0%
!!! ACTTTAAAAATAGCTGATTT+TGG - chr2.2:34601721-34601740 None:intergenic 20.0%
!!! TAGACTCTAATTTTTTTTGT+TGG - chr2.2:34601359-34601378 None:intergenic 20.0%
!!! TTTTGTTTTCTCTTGTTTTT+TGG - chr2.2:34601315-34601334 None:intergenic 20.0%
!!! TTTTTAGTTGAAGATCAAAT+AGG + chr2.2:34601637-34601656 MS.gene67635:CDS 20.0%
! ACCTACAATTTATAGTGAAA+GGG + chr2.2:34599990-34600009 MS.gene67635:CDS 25.0%
! AGATGAAATGTCTTTATACT+TGG - chr2.2:34601605-34601624 None:intergenic 25.0%
! AGGATAAAAAACAATGTTTC+GGG - chr2.2:34601184-34601203 None:intergenic 25.0%
! GTTGTCTTTCAATTTCTTAA+CGG + chr2.2:34599716-34599735 MS.gene67635:CDS 25.0%
! TACCTACAATTTATAGTGAA+AGG + chr2.2:34599989-34600008 MS.gene67635:CDS 25.0%
! TCATAAAATGTTGATCACTA+AGG - chr2.2:34600090-34600109 None:intergenic 25.0%
! TCTAATTGTGTCATAATATG+AGG - chr2.2:34600255-34600274 None:intergenic 25.0%
! TGGTTCAAAAGAAGAAATTT+CGG + chr2.2:34600374-34600393 MS.gene67635:intron 25.0%
! TGTTGAAATTAGTCCTTATA+TGG + chr2.2:34601236-34601255 MS.gene67635:intron 25.0%
!! AGGAAATTTAAAACCTTAGT+TGG - chr2.2:34600133-34600152 None:intergenic 25.0%
!!! ATTTTTTATGACAGAGAGAT+TGG - chr2.2:34601110-34601129 None:intergenic 25.0%
!!! CATGAATTTTAGAAGTCATA+TGG - chr2.2:34600874-34600893 None:intergenic 25.0%
!!! TCAGCTATTTTTAAAGTATC+TGG + chr2.2:34601724-34601743 MS.gene67635:CDS 25.0%
!!! TGGCATTTTAATAAACATAG+AGG + chr2.2:34601069-34601088 MS.gene67635:CDS 25.0%
AAGTAGCAATCTCCATATTA+GGG - chr2.2:34601867-34601886 None:intergenic 30.0%
AATGAGAAAATTCCACTCTT+TGG - chr2.2:34600807-34600826 None:intergenic 30.0%
AATTTCTTCATTGCCAACTA+AGG + chr2.2:34600117-34600136 MS.gene67635:intron 30.0%
AGAAATTGAAAGACAACCTT+AGG - chr2.2:34599713-34599732 None:intergenic 30.0%
AGCATTCTGTGAGAAAATTA+AGG - chr2.2:34601455-34601474 None:intergenic 30.0%
AGGAATGACTAATGTTGTTA+AGG + chr2.2:34601759-34601778 MS.gene67635:CDS 30.0%
AGTAATATGTGGACCATATA+AGG - chr2.2:34601252-34601271 None:intergenic 30.0%
AGTTAAACCAGACAAATACT+TGG + chr2.2:34599850-34599869 MS.gene67635:CDS 30.0%
CATAATTGCAGTATCATTGA+AGG - chr2.2:34600153-34600172 None:intergenic 30.0%
CCTACAATTTATAGTGAAAG+GGG + chr2.2:34599991-34600010 MS.gene67635:CDS 30.0%
CCTGTAAAAGAAAATGCATT+AGG - chr2.2:34600561-34600580 None:intergenic 30.0%
CTTCAATGATACTGCAATTA+TGG + chr2.2:34600151-34600170 MS.gene67635:intron 30.0%
GCTTTGATCATAAGCAATAA+TGG + chr2.2:34600585-34600604 MS.gene67635:CDS 30.0%
GGATAAAAAACAATGTTTCG+GGG - chr2.2:34601183-34601202 None:intergenic 30.0%
GTCAAAAGTTGCATTACTTA+AGG - chr2.2:34601530-34601549 None:intergenic 30.0%
GTTAAACCAGACAAATACTT+GGG + chr2.2:34599851-34599870 MS.gene67635:CDS 30.0%
GTTTATAAGGTTCTATGACT+TGG - chr2.2:34600505-34600524 None:intergenic 30.0%
TAAGTAGCAATCTCCATATT+AGG - chr2.2:34601868-34601887 None:intergenic 30.0%
TATGAATGAGTTCATGTCTT+TGG + chr2.2:34601822-34601841 MS.gene67635:CDS 30.0%
TTAAACCAGACAAATACTTG+GGG + chr2.2:34599852-34599871 MS.gene67635:CDS 30.0%
! AAGTATTTGTCTGGTTTAAC+TGG - chr2.2:34599851-34599870 None:intergenic 30.0%
! ACTGGCCATATATATTCTTT+TGG - chr2.2:34599833-34599852 None:intergenic 30.0%
! AGCAGAATATGTATTTTGCA+TGG + chr2.2:34601381-34601400 MS.gene67635:intron 30.0%
! ATACGGACTACAATACAAAA+AGG - chr2.2:34601204-34601223 None:intergenic 30.0%
! ATTTCATCAACGGTTTTCTT+AGG - chr2.2:34601670-34601689 None:intergenic 30.0%
! CCTAATGCATTTTCTTTTAC+AGG + chr2.2:34600558-34600577 MS.gene67635:intron 30.0%
! TCTCCAAAACTTTTATAGCA+CGG + chr2.2:34600194-34600213 MS.gene67635:intron 30.0%
! TGGTGCCAAAAGAATATATA+TGG + chr2.2:34599825-34599844 MS.gene67635:CDS 30.0%
! TTTGCTGCATCTTGTTTATA+AGG - chr2.2:34600518-34600537 None:intergenic 30.0%
! TTTTCTCATTTGATCTCACA+TGG + chr2.2:34600817-34600836 MS.gene67635:CDS 30.0%
!! AGTTCTAGAACAGTAATATG+TGG - chr2.2:34601263-34601282 None:intergenic 30.0%
!! GTTTCTTAAGAAGCATCAAT+GGG + chr2.2:34599669-34599688 MS.gene67635:CDS 30.0%
!! TGTTTTGCTGTCTGAATTTT+TGG + chr2.2:34601021-34601040 MS.gene67635:CDS 30.0%
!!! AACTATTACCTTTTTTCAGC+AGG - chr2.2:34600466-34600485 None:intergenic 30.0%
!!! ACTATTACCTTTTTTCAGCA+GGG - chr2.2:34600465-34600484 None:intergenic 30.0%
!!! TGTCTTTGGTTTTTGATTAC+TGG + chr2.2:34601836-34601855 MS.gene67635:CDS 30.0%
AACAATACCCTGCTGAAAAA+AGG + chr2.2:34600455-34600474 MS.gene67635:CDS 35.0%
AATCCAGCAAACAAGAATAG+TGG + chr2.2:34600992-34601011 MS.gene67635:CDS 35.0%
ACCGAGATATCTATTTGTAG+TGG - chr2.2:34601935-34601954 None:intergenic 35.0%
ACTATATATGCTTGCAACAG+TGG + chr2.2:34600354-34600373 MS.gene67635:intron 35.0%
AGATATCTATTTGTAGTGGC+TGG - chr2.2:34601931-34601950 None:intergenic 35.0%
AGTGAACAAGATGAAACCTA+AGG + chr2.2:34599694-34599713 MS.gene67635:CDS 35.0%
CCCCTTTCACTATAAATTGT+AGG - chr2.2:34599994-34600013 None:intergenic 35.0%
CTTCTTAAGAAACCAATCTC+TGG - chr2.2:34599662-34599681 None:intergenic 35.0%
GAGTATGAACAAATACTGTG+AGG - chr2.2:34601801-34601820 None:intergenic 35.0%
GCCACTACAAATAGATATCT+CGG + chr2.2:34601931-34601950 MS.gene67635:CDS 35.0%
GTCTTTATACTTGGATAGCA+CGG - chr2.2:34601596-34601615 None:intergenic 35.0%
TATCAGCAAGCAATAGATGA+TGG + chr2.2:34600645-34600664 MS.gene67635:CDS 35.0%
TCAGTTCAGATGACAAAAGA+TGG + chr2.2:34600687-34600706 MS.gene67635:CDS 35.0%
TTTGTTTCATCTCCAGAGAT+TGG + chr2.2:34599647-34599666 MS.gene67635:CDS 35.0%
! ATAAGCAATAATGGAGCAAG+TGG + chr2.2:34600594-34600613 MS.gene67635:CDS 35.0%
! TAGCCGTGCTATAAAAGTTT+TGG - chr2.2:34600200-34600219 None:intergenic 35.0%
! TCTTGTTTGCTGGATTTCTT+TGG - chr2.2:34600988-34601007 None:intergenic 35.0%
! TTACCACTATTCTTGTTTGC+TGG - chr2.2:34600998-34601017 None:intergenic 35.0%
!! GGTTTCTTAAGAAGCATCAA+TGG + chr2.2:34599668-34599687 MS.gene67635:CDS 35.0%
!!! TGTTACTGATTTTCCTTCAG+CGG + chr2.2:34600030-34600049 MS.gene67635:CDS 35.0%
AAGAAAGGCCTTGACATTGT+TGG + chr2.2:34601490-34601509 MS.gene67635:CDS 40.0%
AATTGTAGGTACTCAGCTGT+AGG - chr2.2:34599980-34599999 None:intergenic 40.0%
ACACAATTAGAGTCTCCATG+AGG + chr2.2:34600264-34600283 MS.gene67635:intron 40.0%
ATTGAATTTGATGCCGCTGA+AGG - chr2.2:34600046-34600065 None:intergenic 40.0%
CATATGACTTGATTGCTGCA+AGG - chr2.2:34599793-34599812 None:intergenic 40.0%
CCACTCTTTGGTTGAATTTC+TGG - chr2.2:34600795-34600814 None:intergenic 40.0%
CCAGAAATTCAACCAAAGAG+TGG + chr2.2:34600792-34600811 MS.gene67635:CDS 40.0%
CTGCAATTATGGTCACAATG+AGG + chr2.2:34600162-34600181 MS.gene67635:intron 40.0%
CTTAAACACTGCAGACCTAA+TGG + chr2.2:34600722-34600741 MS.gene67635:CDS 40.0%
GCAATCAAGTCATATGCATC+AGG + chr2.2:34599797-34599816 MS.gene67635:CDS 40.0%
GCATCAGGTACTAATGTTGT+GGG - chr2.2:34599881-34599900 None:intergenic 40.0%
GCTTACCTTGCTTCAAAGAA+AGG + chr2.2:34601475-34601494 MS.gene67635:CDS 40.0%
GTCATATGCATCAGGCATAA+TGG + chr2.2:34599805-34599824 MS.gene67635:CDS 40.0%
TACTTACATCCATTCTGCCA+TGG + chr2.2:34601882-34601901 MS.gene67635:CDS 40.0%
TAGCAGTTGTATCTGCCATT+AGG - chr2.2:34600740-34600759 None:intergenic 40.0%
TCAGCGGCATCAAATTCAAT+AGG + chr2.2:34600046-34600065 MS.gene67635:CDS 40.0%
TGCATCAGGTACTAATGTTG+TGG - chr2.2:34599882-34599901 None:intergenic 40.0%
TTACAGCACCAACAATGTCA+AGG - chr2.2:34601501-34601520 None:intergenic 40.0%
TTACTGGTCAGACCCTAATA+TGG + chr2.2:34601852-34601871 MS.gene67635:CDS 40.0%
TTGCTGATAAGCAAGATCAG+TGG - chr2.2:34600634-34600653 None:intergenic 40.0%
TTTGGAAGCTACTGCCAAAA+GGG - chr2.2:34600970-34600989 None:intergenic 40.0%
! ATGAGGTTTTACAGAGCTCT+GGG - chr2.2:34600238-34600257 None:intergenic 40.0%
! CTATATGGCTGCTTTGTTGT+GGG - chr2.2:34599755-34599774 None:intergenic 40.0%
! TATGAGGTTTTACAGAGCTC+TGG - chr2.2:34600239-34600258 None:intergenic 40.0%
!! GTATCTGGTTCTTTGCTAAC+AGG + chr2.2:34601739-34601758 MS.gene67635:CDS 40.0%
!! TATGGAAGCATTACGTTGCA+AGG - chr2.2:34600856-34600875 None:intergenic 40.0%
!! TCCTTCACAATGGTGCTATA+TGG - chr2.2:34599770-34599789 None:intergenic 40.0%
!!! GCTCAAATTTCTAGCCCTTT+TGG + chr2.2:34600953-34600972 MS.gene67635:intron 40.0%
!!! GCTGTCTGAATTTTTGGAGT+TGG + chr2.2:34601027-34601046 MS.gene67635:CDS 40.0%
!!! TGAATTTTTGGAGTTGGCCA+AGG + chr2.2:34601033-34601052 MS.gene67635:CDS 40.0%
ATCCATTCTGCCATGGTTGA+TGG + chr2.2:34601889-34601908 MS.gene67635:CDS 45.0%
GCCATATAGCACCATTGTGA+AGG + chr2.2:34599766-34599785 MS.gene67635:CDS 45.0%
GTACCTGATGCACACAAACA+AGG + chr2.2:34599890-34599909 MS.gene67635:CDS 45.0%
GTGAAAGGGGAATCTGTTGA+TGG + chr2.2:34600004-34600023 MS.gene67635:CDS 45.0%
TAAGCAAGATCAGTGGAACC+TGG - chr2.2:34600627-34600646 None:intergenic 45.0%
TCAGGTACTAATGTTGTGGG+AGG - chr2.2:34599878-34599897 None:intergenic 45.0%
TGTGACTACTCCATCAACCA+TGG - chr2.2:34601902-34601921 None:intergenic 45.0%
TTAGAGTCTCCATGAGGTTG+CGG + chr2.2:34600270-34600289 MS.gene67635:intron 45.0%
TTGATATCTCCGCAACCTCA+TGG - chr2.2:34600282-34600301 None:intergenic 45.0%
TTGTTCTGTGCAAAGCATGC+TGG - chr2.2:34600440-34600459 None:intergenic 45.0%
! AGTCCTTGTTTGTGTGCATC+AGG - chr2.2:34599896-34599915 None:intergenic 45.0%
! CTTTGGAAGCTACTGCCAAA+AGG - chr2.2:34600971-34600990 None:intergenic 45.0%
! GCTATATGGCTGCTTTGTTG+TGG - chr2.2:34599756-34599775 None:intergenic 45.0%
! GGACTAGAAGTGTATGCTAC+TGG + chr2.2:34599911-34599930 MS.gene67635:CDS 45.0%
!! CAAGGCCTTTCTTTGAAGCA+AGG - chr2.2:34601483-34601502 None:intergenic 45.0%
!! TGGTCACAATGAGGTTGATG+AGG + chr2.2:34600171-34600190 MS.gene67635:intron 45.0%
CTCCATCAACCATGGCAGAA+TGG - chr2.2:34601894-34601913 None:intergenic 50.0%
GGAGCAAGTGGTGTATATCC+AGG + chr2.2:34600606-34600625 MS.gene67635:CDS 50.0%
TGCTGCAAGGTCCTTCACAA+TGG - chr2.2:34599780-34599799 None:intergenic 50.0%
! TTTGGAGTTGGCCAAGGCTA+AGG + chr2.2:34601039-34601058 MS.gene67635:CDS 50.0%
GGAGGCCCCAAGTATTTGTC+TGG - chr2.2:34599860-34599879 None:intergenic 55.0%
GGATAGCACGGAGCTATCGT+CGG - chr2.2:34601584-34601603 None:intergenic 55.0%
GCCAAGGCTAAGGCAGTCAC+TGG + chr2.2:34601049-34601068 MS.gene67635:CDS 60.0%
GCCAGTGACTGCCTTAGCCT+TGG - chr2.2:34601053-34601072 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 34599623 34601987 34599623 ID=MS.gene67635
chr2.2 mRNA 34599623 34601987 34599623 ID=MS.gene67635.t1;Parent=MS.gene67635
chr2.2 exon 34599623 34600067 34599623 ID=MS.gene67635.t1.exon1;Parent=MS.gene67635.t1
chr2.2 CDS 34599623 34600067 34599623 ID=cds.MS.gene67635.t1;Parent=MS.gene67635.t1
chr2.2 exon 34600441 34600476 34600441 ID=MS.gene67635.t1.exon2;Parent=MS.gene67635.t1
chr2.2 CDS 34600441 34600476 34600441 ID=cds.MS.gene67635.t1;Parent=MS.gene67635.t1
chr2.2 exon 34600580 34600861 34600580 ID=MS.gene67635.t1.exon3;Parent=MS.gene67635.t1
chr2.2 CDS 34600580 34600861 34600580 ID=cds.MS.gene67635.t1;Parent=MS.gene67635.t1
chr2.2 exon 34600954 34601090 34600954 ID=MS.gene67635.t1.exon4;Parent=MS.gene67635.t1
chr2.2 CDS 34600954 34601090 34600954 ID=cds.MS.gene67635.t1;Parent=MS.gene67635.t1
chr2.2 exon 34601469 34601987 34601469 ID=MS.gene67635.t1.exon5;Parent=MS.gene67635.t1
chr2.2 CDS 34601469 34601987 34601469 ID=cds.MS.gene67635.t1;Parent=MS.gene67635.t1
Gene Sequence

>MS.gene67635

ATGTTGACCCTTTATAAGATAGACTTTGTTTCATCTCCAGAGATTGGTTTCTTAAGAAGCATCAATGGGAAAGTGAACAAGATGAAACCTAAGGTTGTCTTTCAATTTCTTAACGGTAACGATGTTGAACCCACAACAAAGCAGCCATATAGCACCATTGTGAAGGACCTTGCAGCAATCAAGTCATATGCATCAGGCATAATGGTGCCAAAAGAATATATATGGCCAGTTAAACCAGACAAATACTTGGGGCCTCCCACAACATTAGTACCTGATGCACACAAACAAGGACTAGAAGTGTATGCTACTGGCTTTGCTAATGATTTCTTTTCAAGTTATAGTTATAACTATGATCCTACAGCTGAGTACCTACAATTTATAGTGAAAGGGGAATCTGTTGATGGTCTTGTTACTGATTTTCCTTCAGCGGCATCAAATTCAATAGGTGAATTGAAAATCTTCTACCTTAGTGATCAACATTTTATGAATTGCAAAATTTCTTCATTGCCAACTAAGGTTTTAAATTTCCTTCAATGATACTGCAATTATGGTCACAATGAGGTTGATGAGGTCTCCAAAACTTTTATAGCACGGCTAATGCAATTGCAGAGACCCAGAGCTCTGTAAAACCTCATATTATGACACAATTAGAGTCTCCATGAGGTTGCGGAGATATCAAAAAAAAATTATATTGCGACTACAATTGCAGCTGCTGACTTCAATTTACTAAAACTATATATGCTTGCAACAGTGGTTCAAAAGAAGAAATTTCGGCTTTGAAACTAAGTTCTAATTCTCATAAGTTTCTTGTTTTCCAGCATGCTTTGCACAGAACAATACCCTGCTGAAAAAAGGTAATAGTTTTATTTTTAAATCAATCCAAGTCATAGAACCTTATAAACAAGATGCAGCAAAGCATGAAAATAAGAAGCTAACCTAATGCATTTTCTTTTACAGGACAAGCTTTGATCATAAGCAATAATGGAGCAAGTGGTGTATATCCAGGTTCCACTGATCTTGCTTATCAGCAAGCAATAGATGATGGAGCTGATATTATAGATTGCTCAGTTCAGATGACAAAAGATGGAATTTCATTCTGCTTAAACACTGCAGACCTAATGGCAGATACAACTGCTATGACTAAATTCATGTCGCGATCTTCTAATATTCCAGAAATTCAACCAAAGAGTGGAATTTTCTCATTTGATCTCACATGGAATGAGATTCAGTCCTTGCAACGTAATGCTTCCATATGACTTCTAAAATTCATGAACAGATCTAGCCTTTAATATTTGAACAATGAACTTAAGGTACTTTGTTTCTTGCTTCAGCTCAAATTTCTAGCCCTTTTGGCAGTAGCTTCCAAAGAAATCCAGCAAACAAGAATAGTGGTAAATTTGTTTTGCTGTCTGAATTTTTGGAGTTGGCCAAGGCTAAGGCAGTCACTGGCATTTTAATAAACATAGAGGTAATCAGTATGCATTCCAATCTCTCTGTCATAAAAAATTTACTTAGATATGTTTTTTCGTTCATGTAATATTTTTTTTTTGTTTTAGTCCCCGAAACATTGTTTTTTATCCTTTTTGTATTGTAGTCCGTATAATATTTGTTCATGTTGAAATTAGTCCTTATATGGTCCACATATTACTGTTCTAGAACTAACATGAAAAAATATTAGAAGGACTATAACCAAAAAACAAGAGAAAACAAAATATCTTATTCAGGGACTAAAACCAACAAAAAAAATTAGAGTCTAAAAGCAGAATATGTATTTTGCATGGATGAAAATAATATTTAAGACTAAAAAGTTTATAAATCTATCTAACTGTCCTTAATTTTCTCACAGAATGCTGCTTACCTTGCTTCAAAGAAAGGCCTTGACATTGTTGGTGCTGTAAGCACTGCCTTAAGTAATGCAACTTTTGACAAGCAAGTCACACAACAAGTTTTGATTCAATCCGACGATAGCTCCGTGCTATCCAAGTATAAAGACATTTCATCTTACAAAAGAGTGTTTTTAGTTGAAGATCAAATAGGCGATGCACCTAAGAAAACCGTTGATGAAATTAAGAAGTATGCAGAAGCAGTGAATCTTCCAAAATCAGCTATTTTTAAAGTATCTGGTTCTTTGCTAACAGGAATGACTAATGTTGTTAAGGAGTTGAAAGATGCAAACCTCACAGTATTTGTTCATACTCTTATGAATGAGTTCATGTCTTTGGTTTTTGATTACTGGTCAGACCCTAATATGGAGATTGCTACTTACATCCATTCTGCCATGGTTGATGGAGTAGTCACAGATTTTCCAGCCACTACAAATAGATATCTCGGTAAGAAATTCAATCTCTTCAGTTCAATTGATTAG
Protein sequence

>MS.gene67635.t1

MLTLYKIDFVSSPEIGFLRSINGKVNKMKPKVVFQFLNGNDVEPTTKQPYSTIVKDLAAIKSYASGIMVPKEYIWPVKPDKYLGPPTTLVPDAHKQGLEVYATGFANDFFSSYSYNYDPTAEYLQFIVKGESVDGLVTDFPSAASNSIACFAQNNTLLKKGQALIISNNGASGVYPGSTDLAYQQAIDDGADIIDCSVQMTKDGISFCLNTADLMADTTAMTKFMSRSSNIPEIQPKSGIFSFDLTWNEIQSLQPQISSPFGSSFQRNPANKNSGKFVLLSEFLELAKAKAVTGILINIENAAYLASKKGLDIVGAVSTALSNATFDKQVTQQVLIQSDDSSVLSKYKDISSYKRVFLVEDQIGDAPKKTVDEIKKYAEAVNLPKSAIFKVSGSLLTGMTNVVKELKDANLTVFVHTLMNEFMSLVFDYWSDPNMEIATYIHSAMVDGVVTDFPATTNRYLGKKFNLFSSID