Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67987.t1 | XP_028762943.1 | 71.4 | 364 | 82 | 2 | 1 | 358 | 1 | 348 | 8.80E-112 | 413.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67987.t1 | A0A1U8KII2 | 64.2 | 344 | 115 | 1 | 1 | 344 | 1 | 336 | 4.5e-102 | 380.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049501 | MS.gene67987 | 0.801216 | 1.00E-48 | -1.69E-46 |
MS.gene050026 | MS.gene67987 | 0.801179 | 1.02E-48 | -1.69E-46 |
MS.gene050657 | MS.gene67987 | 0.809266 | 2.06E-50 | -1.69E-46 |
MS.gene051744 | MS.gene67987 | 0.818909 | 1.53E-52 | -1.69E-46 |
MS.gene052311 | MS.gene67987 | 0.802908 | 4.49E-49 | -1.69E-46 |
MS.gene056174 | MS.gene67987 | 0.800532 | 1.38E-48 | -1.69E-46 |
MS.gene058010 | MS.gene67987 | 0.800623 | 1.32E-48 | -1.69E-46 |
MS.gene059272 | MS.gene67987 | 0.814518 | 1.48E-51 | -1.69E-46 |
MS.gene060167 | MS.gene67987 | 0.803472 | 3.43E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene67987.t1 | MTR_7g062720 | 65.909 | 132 | 45 | 0 | 1 | 132 | 1 | 132 | 9.36e-60 | 190 |
MS.gene67987.t1 | MTR_5g061150 | 62.205 | 127 | 48 | 0 | 20 | 146 | 10 | 136 | 1.12e-47 | 158 |
MS.gene67987.t1 | MTR_4g037355 | 58.824 | 136 | 35 | 5 | 151 | 285 | 1 | 116 | 1.10e-41 | 142 |
MS.gene67987.t1 | MTR_4g112730 | 71.831 | 71 | 18 | 1 | 138 | 208 | 1 | 69 | 1.12e-26 | 102 |
MS.gene67987.t1 | MTR_1g036690 | 58.537 | 82 | 27 | 3 | 278 | 358 | 5 | 80 | 1.04e-22 | 90.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 67 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTGAGGCTCTTAAAATTTC+TGG | 0.064868 | 6.4:-11277038 | MS.gene67987:CDS |
TTCGGCATTTAAATGAATTT+TGG | 0.166319 | 6.4:+11276986 | None:intergenic |
CACTTCAAAATAAGGATAAA+AGG | 0.234592 | 6.4:-11276149 | MS.gene67987:CDS |
CCAACAATCACTTCAAAATA+AGG | 0.244294 | 6.4:-11276157 | MS.gene67987:CDS |
TATGGAAGGGGACGTGGTTT+TGG | 0.259444 | 6.4:-11276384 | MS.gene67987:CDS |
AAATTGTCCCAAAGATCTTT+TGG | 0.267031 | 6.4:+11276840 | None:intergenic |
AATTTCTGGAAATAATTATC+TGG | 0.276112 | 6.4:-11277024 | MS.gene67987:CDS |
TAGAAGATCCAAAAGATCTT+TGG | 0.283634 | 6.4:-11276848 | MS.gene67987:CDS |
TGTGTTGCTACATTCACTTC+TGG | 0.294995 | 6.4:+11276474 | None:intergenic |
TATAGGTGGGGTTCTATTCC+TGG | 0.331534 | 6.4:+11275995 | None:intergenic |
TAAAGATCAACAAGATGTTT+TGG | 0.333763 | 6.4:+11276180 | None:intergenic |
TGAAGATGATTATGGTAATA+TGG | 0.338642 | 6.4:-11276097 | MS.gene67987:CDS |
CTGGAAATAATTATCTGGCT+TGG | 0.347827 | 6.4:-11277019 | MS.gene67987:CDS |
TGGAAATAATTATCTGGCTT+GGG | 0.353242 | 6.4:-11277018 | MS.gene67987:CDS |
CGTGGACGTGGTCGTGGTTA+TGG | 0.362984 | 6.4:-11276402 | MS.gene67987:CDS |
AACCATTCATTACGAGCATT+AGG | 0.386252 | 6.4:+11276780 | None:intergenic |
GAAAATGATGAAGATGATTA+TGG | 0.391347 | 6.4:-11276105 | MS.gene67987:CDS |
TTTGGGACAATTTAAAAGAA+AGG | 0.395342 | 6.4:-11276830 | MS.gene67987:CDS |
AGAAGATCCAAAAGATCTTT+GGG | 0.400056 | 6.4:-11276847 | MS.gene67987:CDS |
GTGTTGCTACATTCACTTCT+GGG | 0.423307 | 6.4:+11276475 | None:intergenic |
CGTGGTTATGGAAGGGGACG+TGG | 0.429618 | 6.4:-11276390 | MS.gene67987:CDS |
CCTTCGTCACCACCTTCATA+AGG | 0.433246 | 6.4:-11276895 | MS.gene67987:CDS |
TGCTATCGATGTGGAGGAAA+AGG | 0.437478 | 6.4:-11276228 | MS.gene67987:CDS |
ATTAACACTGTGTGGAGAAA+AGG | 0.440407 | 6.4:-11276688 | MS.gene67987:CDS |
CAAAATCGTGGTCGTGGCCG+TGG | 0.442209 | 6.4:-11276438 | MS.gene67987:CDS |
CGTGGTCGTGGCCGTGGTCA+TGG | 0.454221 | 6.4:-11276432 | MS.gene67987:CDS |
CAAAACAACTGAACAACAAA+AGG | 0.454927 | 6.4:-11276934 | MS.gene67987:CDS |
AATTGTATCTCCATGCCCTT+CGG | 0.460742 | 6.4:+11276968 | None:intergenic |
AGAAATCAGCAGCATCTAAG+TGG | 0.464577 | 6.4:+11276067 | None:intergenic |
TTTCACGGTATTGTTGCTGC+AGG | 0.465441 | 6.4:+11276607 | None:intergenic |
AATGTTGTAAAGAATGATAT+TGG | 0.471241 | 6.4:-11276279 | MS.gene67987:CDS |
GCAGCAACAATACCGTGAAA+AGG | 0.474876 | 6.4:-11276604 | MS.gene67987:CDS |
AATCACTCGGCTCGTCCCAC+TGG | 0.475930 | 6.4:-11276510 | MS.gene67987:CDS |
GCTACATTCACTTCTGGGAA+TGG | 0.483138 | 6.4:+11276480 | None:intergenic |
ACTTCAAAATAAGGATAAAA+GGG | 0.487291 | 6.4:-11276148 | MS.gene67987:CDS |
CATTTAAATGCCGAAGGGCA+TGG | 0.494088 | 6.4:-11276978 | MS.gene67987:CDS |
CAGCAACAATACCGTGAAAA+GGG | 0.498612 | 6.4:-11276603 | MS.gene67987:CDS |
GACGTGGTCGTGGTTATGGA+AGG | 0.501950 | 6.4:-11276398 | MS.gene67987:CDS |
GTAGCAACACATGATCACTA+TGG | 0.504040 | 6.4:-11276462 | MS.gene67987:CDS |
GATGTGGAGGAAAAGGTCAT+TGG | 0.504176 | 6.4:-11276221 | MS.gene67987:CDS |
CGTGGCCGTGGTCATGGTCG+TGG | 0.506333 | 6.4:-11276426 | MS.gene67987:CDS |
TTCCTAATGCTCGTAATGAA+TGG | 0.506622 | 6.4:-11276782 | MS.gene67987:CDS |
TACATTAGATGCATGAAAAG+TGG | 0.516304 | 6.4:+11276632 | None:intergenic |
CGTGGACGTGGACGTGGTCG+TGG | 0.530509 | 6.4:-11276408 | MS.gene67987:CDS |
CATTAGAGATGAAAATATCC+AGG | 0.532865 | 6.4:-11276013 | MS.gene67987:CDS |
CATGGAGATACAATTAAAGA+AGG | 0.533844 | 6.4:-11276960 | MS.gene67987:CDS |
AAAATTCATTTAAATGCCGA+AGG | 0.537172 | 6.4:-11276984 | MS.gene67987:CDS |
CATGGTCGTGGACGTGGACG+TGG | 0.538462 | 6.4:-11276414 | MS.gene67987:CDS |
CGTGGTCATGGTCGTGGACG+TGG | 0.540833 | 6.4:-11276420 | MS.gene67987:CDS |
CGTGGTCGTGGTTATGGAAG+GGG | 0.551769 | 6.4:-11276396 | MS.gene67987:CDS |
CTTAATATCATGCCTGCTTG+TGG | 0.567363 | 6.4:-11276562 | MS.gene67987:CDS |
TATGGACAAAATCGTGGTCG+TGG | 0.573891 | 6.4:-11276444 | MS.gene67987:CDS |
GTCTGTAATCGAATATAACT+CGG | 0.574961 | 6.4:-11276733 | MS.gene67987:CDS |
AACTGAACAACAAAAGGCTA+AGG | 0.582581 | 6.4:-11276928 | MS.gene67987:CDS |
ATTCATTACGAGCATTAGGA+AGG | 0.589984 | 6.4:+11276784 | None:intergenic |
CCTTATGAAGGTGGTGACGA+AGG | 0.598722 | 6.4:+11276895 | None:intergenic |
ACGTGGTCGTGGTTATGGAA+GGG | 0.598966 | 6.4:-11276397 | MS.gene67987:CDS |
AGTATTTGCTATCGATGTGG+AGG | 0.619536 | 6.4:-11276234 | MS.gene67987:CDS |
GAAATCAGCAGCATCTAAGT+GGG | 0.621669 | 6.4:+11276068 | None:intergenic |
AAATTCATTTAAATGCCGAA+GGG | 0.631745 | 6.4:-11276983 | MS.gene67987:CDS |
GAGAGTATTTGCTATCGATG+TGG | 0.646271 | 6.4:-11276237 | MS.gene67987:CDS |
CACGTCCACGACCATGACCA+CGG | 0.661673 | 6.4:+11276421 | None:intergenic |
GTGGTGACGAAGGAATATCA+TGG | 0.663314 | 6.4:+11276905 | None:intergenic |
ACTTCTCTATTAACACTGTG+TGG | 0.668278 | 6.4:-11276696 | MS.gene67987:CDS |
TGGGAATGGAGCACTACCAG+TGG | 0.672955 | 6.4:+11276494 | None:intergenic |
GGGAATGGAGCACTACCAGT+GGG | 0.676344 | 6.4:+11276495 | None:intergenic |
GATCACTATGGACAAAATCG+TGG | 0.728183 | 6.4:-11276450 | MS.gene67987:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATGTTGTAAAGAATGATAT+TGG | - | chr6.4:11276791-11276810 | MS.gene67987:CDS | 20.0% |
!! | ACTTCAAAATAAGGATAAAA+GGG | - | chr6.4:11276922-11276941 | MS.gene67987:CDS | 20.0% |
!!! | AATTTCTGGAAATAATTATC+TGG | - | chr6.4:11276046-11276065 | MS.gene67987:CDS | 20.0% |
! | AAAATTCATTTAAATGCCGA+AGG | - | chr6.4:11276086-11276105 | MS.gene67987:CDS | 25.0% |
! | AAATTCATTTAAATGCCGAA+GGG | - | chr6.4:11276087-11276106 | MS.gene67987:CDS | 25.0% |
! | CACTTCAAAATAAGGATAAA+AGG | - | chr6.4:11276921-11276940 | MS.gene67987:CDS | 25.0% |
! | GAAAATGATGAAGATGATTA+TGG | - | chr6.4:11276965-11276984 | MS.gene67987:CDS | 25.0% |
! | TGAAGATGATTATGGTAATA+TGG | - | chr6.4:11276973-11276992 | MS.gene67987:CDS | 25.0% |
!! | TAAAGATCAACAAGATGTTT+TGG | + | chr6.4:11276893-11276912 | None:intergenic | 25.0% |
!! | TATTTTCATCTCTAATGAGA+TGG | + | chr6.4:11277054-11277073 | None:intergenic | 25.0% |
!! | TTACAACATTTTTCATCTTC+TGG | + | chr6.4:11276781-11276800 | None:intergenic | 25.0% |
!! | TTCGGCATTTAAATGAATTT+TGG | + | chr6.4:11276087-11276106 | None:intergenic | 25.0% |
!! | TTTGGGACAATTTAAAAGAA+AGG | - | chr6.4:11276240-11276259 | MS.gene67987:CDS | 25.0% |
!!! | CATTTTTTAGATCCTTATGA+AGG | + | chr6.4:11276190-11276209 | None:intergenic | 25.0% |
!!! | GAGAAAATGTGTTTTTGTTT+TGG | + | chr6.4:11276757-11276776 | None:intergenic | 25.0% |
AGAAGATCCAAAAGATCTTT+GGG | - | chr6.4:11276223-11276242 | MS.gene67987:CDS | 30.0% | |
CAAAACAACTGAACAACAAA+AGG | - | chr6.4:11276136-11276155 | MS.gene67987:CDS | 30.0% | |
CATGGAGATACAATTAAAGA+AGG | - | chr6.4:11276110-11276129 | MS.gene67987:CDS | 30.0% | |
CATTAGAGATGAAAATATCC+AGG | - | chr6.4:11277057-11277076 | MS.gene67987:CDS | 30.0% | |
CCAACAATCACTTCAAAATA+AGG | - | chr6.4:11276913-11276932 | MS.gene67987:CDS | 30.0% | |
GTCTGTAATCGAATATAACT+CGG | - | chr6.4:11276337-11276356 | MS.gene67987:CDS | 30.0% | |
TACATTAGATGCATGAAAAG+TGG | + | chr6.4:11276441-11276460 | None:intergenic | 30.0% | |
TAGAAGATCCAAAAGATCTT+TGG | - | chr6.4:11276222-11276241 | MS.gene67987:CDS | 30.0% | |
! | AAATTGTCCCAAAGATCTTT+TGG | + | chr6.4:11276233-11276252 | None:intergenic | 30.0% |
! | AAGATCTTTTGGATCTTCTA+TGG | + | chr6.4:11276222-11276241 | None:intergenic | 30.0% |
! | GCTTTTGATGAAAAATCACT+CGG | - | chr6.4:11276547-11276566 | MS.gene67987:CDS | 30.0% |
! | TGGAAATAATTATCTGGCTT+GGG | - | chr6.4:11276052-11276071 | MS.gene67987:CDS | 30.0% |
! | TTTGAGGCTCTTAAAATTTC+TGG | - | chr6.4:11276032-11276051 | MS.gene67987:CDS | 30.0% |
! | TTTTTAGATCCTTATGAAGG+TGG | + | chr6.4:11276187-11276206 | None:intergenic | 30.0% |
!! | GGTTTTAATCGTAATCACAA+TGG | - | chr6.4:11276707-11276726 | MS.gene67987:CDS | 30.0% |
!!! | ACCTTTTAAAACCCTTTTCA+CGG | + | chr6.4:11276481-11276500 | None:intergenic | 30.0% |
!!! | CCTTATTTTGAAGTGATTGT+TGG | + | chr6.4:11276916-11276935 | None:intergenic | 30.0% |
AACCATTCATTACGAGCATT+AGG | + | chr6.4:11276293-11276312 | None:intergenic | 35.0% | |
AACTGAACAACAAAAGGCTA+AGG | - | chr6.4:11276142-11276161 | MS.gene67987:CDS | 35.0% | |
ACTTCTCTATTAACACTGTG+TGG | - | chr6.4:11276374-11276393 | MS.gene67987:CDS | 35.0% | |
ATTAACACTGTGTGGAGAAA+AGG | - | chr6.4:11276382-11276401 | MS.gene67987:CDS | 35.0% | |
ATTCATTACGAGCATTAGGA+AGG | + | chr6.4:11276289-11276308 | None:intergenic | 35.0% | |
CTGGAAATAATTATCTGGCT+TGG | - | chr6.4:11276051-11276070 | MS.gene67987:CDS | 35.0% | |
TTCCTAATGCTCGTAATGAA+TGG | - | chr6.4:11276288-11276307 | MS.gene67987:CDS | 35.0% | |
! | AGATGGTCAATCTTTTCATC+AGG | + | chr6.4:11277037-11277056 | None:intergenic | 35.0% |
! | CCTCAAAATCAAGTTTTGCA+AGG | + | chr6.4:11276019-11276038 | None:intergenic | 35.0% |
! | CCTTGCAAAACTTGATTTTG+AGG | - | chr6.4:11276016-11276035 | MS.gene67987:CDS | 35.0% |
! | CTTTTGGATCTTCTATGGTA+AGG | + | chr6.4:11276217-11276236 | None:intergenic | 35.0% |
!!! | ACCGTGAAAAGGGTTTTAAA+AGG | - | chr6.4:11276477-11276496 | MS.gene67987:CDS | 35.0% |
AATTGTATCTCCATGCCCTT+CGG | + | chr6.4:11276105-11276124 | None:intergenic | 40.0% | |
AGAAATCAGCAGCATCTAAG+TGG | + | chr6.4:11277006-11277025 | None:intergenic | 40.0% | |
CAGCAACAATACCGTGAAAA+GGG | - | chr6.4:11276467-11276486 | MS.gene67987:CDS | 40.0% | |
CTTAATATCATGCCTGCTTG+TGG | - | chr6.4:11276508-11276527 | MS.gene67987:CDS | 40.0% | |
GAAATCAGCAGCATCTAAGT+GGG | + | chr6.4:11277005-11277024 | None:intergenic | 40.0% | |
GATCACTATGGACAAAATCG+TGG | - | chr6.4:11276620-11276639 | MS.gene67987:CDS | 40.0% | |
GTAGCAACACATGATCACTA+TGG | - | chr6.4:11276608-11276627 | MS.gene67987:CDS | 40.0% | |
! | GAAGGATGACAGTTTTCTGA+TGG | + | chr6.4:11276271-11276290 | None:intergenic | 40.0% |
! | GTGTTGCTACATTCACTTCT+GGG | + | chr6.4:11276598-11276617 | None:intergenic | 40.0% |
! | TATTTTGTTCTGCCACAAGC+AGG | + | chr6.4:11276523-11276542 | None:intergenic | 40.0% |
! | TGTGTTGCTACATTCACTTC+TGG | + | chr6.4:11276599-11276618 | None:intergenic | 40.0% |
!! | AGTATTTGCTATCGATGTGG+AGG | - | chr6.4:11276836-11276855 | MS.gene67987:CDS | 40.0% |
!! | GAGAGTATTTGCTATCGATG+TGG | - | chr6.4:11276833-11276852 | MS.gene67987:CDS | 40.0% |
CATTTAAATGCCGAAGGGCA+TGG | - | chr6.4:11276092-11276111 | MS.gene67987:CDS | 45.0% | |
GATGTGGAGGAAAAGGTCAT+TGG | - | chr6.4:11276849-11276868 | MS.gene67987:CDS | 45.0% | |
GCAGCAACAATACCGTGAAA+AGG | - | chr6.4:11276466-11276485 | MS.gene67987:CDS | 45.0% | |
TATGGACAAAATCGTGGTCG+TGG | - | chr6.4:11276626-11276645 | MS.gene67987:CDS | 45.0% | |
TGCTATCGATGTGGAGGAAA+AGG | - | chr6.4:11276842-11276861 | MS.gene67987:CDS | 45.0% | |
TTTCACGGTATTGTTGCTGC+AGG | + | chr6.4:11276466-11276485 | None:intergenic | 45.0% | |
! | GCTACATTCACTTCTGGGAA+TGG | + | chr6.4:11276593-11276612 | None:intergenic | 45.0% |
! | GTGGTGACGAAGGAATATCA+TGG | + | chr6.4:11276168-11276187 | None:intergenic | 45.0% |
!!! | AAGATGTTTTGGCGTACGAC+AGG | + | chr6.4:11276882-11276901 | None:intergenic | 45.0% |
ACGTGGTCGTGGTTATGGAA+GGG | - | chr6.4:11276673-11276692 | MS.gene67987:CDS | 50.0% | |
CCTTCGTCACCACCTTCATA+AGG | - | chr6.4:11276175-11276194 | MS.gene67987:CDS | 50.0% | |
! | CCTTATGAAGGTGGTGACGA+AGG | + | chr6.4:11276178-11276197 | None:intergenic | 50.0% |
! | TATGGAAGGGGACGTGGTTT+TGG | - | chr6.4:11276686-11276705 | MS.gene67987:CDS | 50.0% |
CGTGGTCGTGGTTATGGAAG+GGG | - | chr6.4:11276674-11276693 | MS.gene67987:CDS | 55.0% | |
GACGTGGTCGTGGTTATGGA+AGG | - | chr6.4:11276672-11276691 | MS.gene67987:CDS | 55.0% | |
! | GGGAATGGAGCACTACCAGT+GGG | + | chr6.4:11276578-11276597 | None:intergenic | 55.0% |
! | TGGGAATGGAGCACTACCAG+TGG | + | chr6.4:11276579-11276598 | None:intergenic | 55.0% |
CAAAATCGTGGTCGTGGCCG+TGG | - | chr6.4:11276632-11276651 | MS.gene67987:CDS | 60.0% | |
CACGTCCACGACCATGACCA+CGG | + | chr6.4:11276652-11276671 | None:intergenic | 60.0% | |
CGTGGACGTGGTCGTGGTTA+TGG | - | chr6.4:11276668-11276687 | MS.gene67987:CDS | 60.0% | |
CGTGGTTATGGAAGGGGACG+TGG | - | chr6.4:11276680-11276699 | MS.gene67987:CDS | 60.0% | |
! | AATCACTCGGCTCGTCCCAC+TGG | - | chr6.4:11276560-11276579 | MS.gene67987:CDS | 60.0% |
CATGGTCGTGGACGTGGACG+TGG | - | chr6.4:11276656-11276675 | MS.gene67987:CDS | 65.0% | |
CGTGGTCATGGTCGTGGACG+TGG | - | chr6.4:11276650-11276669 | MS.gene67987:CDS | 65.0% | |
CGTGGACGTGGACGTGGTCG+TGG | - | chr6.4:11276662-11276681 | MS.gene67987:CDS | 70.0% | |
CGTGGCCGTGGTCATGGTCG+TGG | - | chr6.4:11276644-11276663 | MS.gene67987:CDS | 70.0% | |
CGTGGTCGTGGCCGTGGTCA+TGG | - | chr6.4:11276638-11276657 | MS.gene67987:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.4 | gene | 11276008 | 11277084 | 11276008 | ID=MS.gene67987 |
chr6.4 | mRNA | 11276008 | 11277084 | 11276008 | ID=MS.gene67987.t1;Parent=MS.gene67987 |
chr6.4 | exon | 11276008 | 11277084 | 11276008 | ID=MS.gene67987.t1.exon1;Parent=MS.gene67987.t1 |
chr6.4 | CDS | 11276008 | 11277084 | 11276008 | ID=cds.MS.gene67987.t1;Parent=MS.gene67987.t1 |
Gene Sequence |
Protein sequence |