Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68602.t1 | XP_013458336.1 | 96.1 | 257 | 6 | 1 | 1 | 257 | 1 | 253 | 1.20E-123 | 452.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68602.t1 | Q75QI0 | 36.7 | 180 | 75 | 6 | 106 | 250 | 115 | 290 | 5.7e-13 | 76.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68602.t1 | B7FJR2 | 96.1 | 257 | 6 | 1 | 1 | 257 | 1 | 253 | 8.8e-124 | 452.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050277 | MS.gene68602 | 0.800737 | 1.25E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68602.t1 | MTR_4g123060 | 96.109 | 257 | 6 | 1 | 1 | 257 | 1 | 253 | 5.46e-179 | 492 |
| MS.gene68602.t1 | MTR_4g123060 | 95.175 | 228 | 7 | 1 | 30 | 257 | 49 | 272 | 1.23e-154 | 431 |
| MS.gene68602.t1 | MTR_4g123060 | 96.262 | 214 | 4 | 1 | 44 | 257 | 1 | 210 | 4.71e-147 | 409 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68602.t1 | AT5G30490 | 57.269 | 227 | 81 | 4 | 33 | 251 | 16 | 234 | 1.37e-65 | 204 |
| MS.gene68602.t1 | AT5G30490 | 57.269 | 227 | 81 | 4 | 33 | 251 | 16 | 234 | 1.37e-65 | 204 |
| MS.gene68602.t1 | AT5G30490 | 57.269 | 227 | 81 | 4 | 33 | 251 | 16 | 234 | 1.37e-65 | 204 |
Find 61 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAACTGCTAATAACTTTAT+TGG | 0.127150 | 8.1:+7877750 | None:intergenic |
| GTAGAACTGGATGTCTTATT+TGG | 0.132758 | 8.1:-7877576 | MS.gene68602:intron |
| GAAGAGTTCAAACCAGTATT+TGG | 0.182757 | 8.1:-7876509 | MS.gene68602:CDS |
| AAAGGACTGGGGAGAATTTA+AGG | 0.207621 | 8.1:-7876572 | MS.gene68602:CDS |
| TTGCATATCTGGTCGCTTCC+TGG | 0.258995 | 8.1:+7876411 | None:intergenic |
| ACAGCGTCGTCTTGCATATC+TGG | 0.348328 | 8.1:+7876400 | None:intergenic |
| TCCAGGCTTTCCCCTGGAAC+AGG | 0.356037 | 8.1:+7877937 | None:intergenic |
| TTTATTCATTTGTTCCCATA+TGG | 0.359963 | 8.1:+7877780 | None:intergenic |
| CCCAGGAGATTCAGTTGTCT+TGG | 0.360854 | 8.1:+7877544 | None:intergenic |
| TCTGTCAAAGAACCTGTTCC+AGG | 0.362610 | 8.1:-7877949 | MS.gene68602:CDS |
| AGGAAACCTTATCCAAATAC+TGG | 0.366492 | 8.1:+7876497 | None:intergenic |
| GTAATCTGTTCGCTGCAAAA+AGG | 0.374277 | 8.1:+7876477 | None:intergenic |
| TAGAACTGGATGTCTTATTT+GGG | 0.385492 | 8.1:-7877575 | MS.gene68602:CDS |
| CTTTCGTTTCTGCCTCAAGC+AGG | 0.388900 | 8.1:-7877421 | MS.gene68602:CDS |
| TGTACTTGATAAGACCAAAA+AGG | 0.392164 | 8.1:-7876590 | MS.gene68602:CDS |
| AGCAGAAGGTGCAGGAGCTT+TGG | 0.392692 | 8.1:+7876657 | None:intergenic |
| TTCAAACCAGTATTTGGATA+AGG | 0.393487 | 8.1:-7876503 | MS.gene68602:CDS |
| GGAAAGCCTGGAACCAAAAC+AGG | 0.393883 | 8.1:-7877926 | MS.gene68602:CDS |
| ACTGAGGTTCGAGACTTTGC+TGG | 0.395239 | 8.1:-7876739 | MS.gene68602:CDS |
| CACGATTGGCATTGCAATCC+AGG | 0.397589 | 8.1:-7876429 | MS.gene68602:CDS |
| AAGCTCAAGTTGATGCCATA+TGG | 0.405389 | 8.1:-7877795 | MS.gene68602:CDS |
| ACCTGTTCCAGGGGAAAGCC+TGG | 0.406254 | 8.1:-7877938 | MS.gene68602:CDS |
| CCCTCTCTCGCTCAAATTCA+CGG | 0.409298 | 8.1:+7876455 | None:intergenic |
| GAACCAAAACAGGATGTTAC+TGG | 0.415009 | 8.1:-7877916 | MS.gene68602:intron |
| TTTGGTTCCAGGCTTTCCCC+TGG | 0.416515 | 8.1:+7877931 | None:intergenic |
| TCACCAGTAACATCCTGTTT+TGG | 0.423793 | 8.1:+7877913 | None:intergenic |
| CTGGATGTCTTATTTGGGAT+TGG | 0.424113 | 8.1:-7877570 | MS.gene68602:CDS |
| CCCAAGACAACTGAATCTCC+TGG | 0.433746 | 8.1:-7877545 | MS.gene68602:CDS |
| ATTGTTTCAGATACAATCAA+TGG | 0.433797 | 8.1:-7877985 | MS.gene68602:intron |
| TGCTGCTGCTGCTCTTGCAG+CGG | 0.435556 | 8.1:-7877456 | MS.gene68602:CDS |
| ATATGGGAACAAATGAATAA+AGG | 0.438066 | 8.1:-7877778 | MS.gene68602:CDS |
| CCAGGAGATTCAGTTGTCTT+GGG | 0.439891 | 8.1:+7877545 | None:intergenic |
| AGCTCAAGTTGATGCCATAT+GGG | 0.464195 | 8.1:-7877794 | MS.gene68602:CDS |
| GAATTTAAGGAAGAAAATAA+AGG | 0.476093 | 8.1:-7876559 | MS.gene68602:CDS |
| CGAAGATCTCTTCTTTGATG+TGG | 0.495435 | 8.1:+7877699 | None:intergenic |
| GCTTGTGGATTCTGATTCAA+AGG | 0.498471 | 8.1:-7876695 | MS.gene68602:CDS |
| TTCGTTTCTGCCTCAAGCAG+GGG | 0.501811 | 8.1:-7877419 | MS.gene68602:CDS |
| TCAAAGTGTACCTGGTGTGC+TGG | 0.507207 | 8.1:-7877510 | MS.gene68602:CDS |
| GCATCCACAGCAGAAGGTGC+AGG | 0.508516 | 8.1:+7876649 | None:intergenic |
| TTTCGTTTCTGCCTCAAGCA+GGG | 0.511551 | 8.1:-7877420 | MS.gene68602:CDS |
| GCGAGAGAGGGATGCACGAT+TGG | 0.512295 | 8.1:-7876443 | MS.gene68602:CDS |
| AGCTCCTGCACCTTCTGCTG+TGG | 0.517744 | 8.1:-7876653 | MS.gene68602:CDS |
| CACATCAAAGAAGAGATCTT+CGG | 0.526656 | 8.1:-7877698 | MS.gene68602:intron |
| AGCACACCAGGTACACTTTG+AGG | 0.529967 | 8.1:+7877512 | None:intergenic |
| TGTGCTCCTCAAAGTGTACC+TGG | 0.545125 | 8.1:-7877518 | MS.gene68602:CDS |
| TAAGGAAGAAAATAAAGGAC+TGG | 0.554675 | 8.1:-7876554 | MS.gene68602:CDS |
| CTGTCAAAGAACCTGTTCCA+GGG | 0.556764 | 8.1:-7877948 | MS.gene68602:CDS |
| GTACTGCCTTCCAGCACACC+AGG | 0.559479 | 8.1:+7877500 | None:intergenic |
| ACCGTGAATTTGAGCGAGAG+AGG | 0.565595 | 8.1:-7876456 | MS.gene68602:CDS |
| CCGTGAATTTGAGCGAGAGA+GGG | 0.577774 | 8.1:-7876455 | MS.gene68602:CDS |
| CTTTGAGGAGCACACTGCCC+AGG | 0.584341 | 8.1:+7877527 | None:intergenic |
| CCAAGACAACTGAATCTCCT+GGG | 0.592003 | 8.1:-7877544 | MS.gene68602:CDS |
| TCGTTTCTGCCTCAAGCAGG+GGG | 0.596370 | 8.1:-7877418 | MS.gene68602:CDS |
| AGGACAGCATCCACAGCAGA+AGG | 0.596814 | 8.1:+7876643 | None:intergenic |
| GCGGGAGTGATGAGTTCCGC+CGG | 0.635632 | 8.1:-7878222 | None:intergenic |
| AGTGTACCTGGTGTGCTGGA+AGG | 0.640031 | 8.1:-7877506 | MS.gene68602:CDS |
| GAAGGCAGTACAAGTGACGA+AGG | 0.646723 | 8.1:-7877488 | MS.gene68602:CDS |
| TGTGGATTCTGATTCAAAGG+AGG | 0.652024 | 8.1:-7876692 | MS.gene68602:CDS |
| TTTCCATTATCAGATTACTG+AGG | 0.657648 | 8.1:-7876755 | MS.gene68602:intron |
| TGTCAAAGAACCTGTTCCAG+GGG | 0.662815 | 8.1:-7877947 | MS.gene68602:CDS |
| AAGGCAGTACAAGTGACGAA+GGG | 0.707515 | 8.1:-7877487 | MS.gene68602:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAAAAAACAAAACAA+CGG | + | chr8.1:7876947-7876966 | None:intergenic | 10.0% |
| !! | AAAACTGCTAATAACTTTAT+TGG | + | chr8.1:7876862-7876881 | None:intergenic | 20.0% |
| !! | AATTGAATATAAAAAGCTTG+TGG | - | chr8.1:7877899-7877918 | MS.gene68602:intron | 20.0% |
| !! | GAATTTAAGGAAGAAAATAA+AGG | - | chr8.1:7878050-7878069 | MS.gene68602:intron | 20.0% |
| !! | GTTCTATGAATAATGAATAA+TGG | + | chr8.1:7877796-7877815 | None:intergenic | 20.0% |
| !! | TAACCGTAAAAATAAAACAT+TGG | - | chr8.1:7877653-7877672 | MS.gene68602:intron | 20.0% |
| !! | TTCCAATATTTGATATAGTA+GGG | - | chr8.1:7877676-7877695 | MS.gene68602:intron | 20.0% |
| !!! | ATGTTTATTTTCGAGATTTA+TGG | - | chr8.1:7876740-7876759 | MS.gene68602:CDS | 20.0% |
| !!! | GAACCAATGTTTTATTTTTA+CGG | + | chr8.1:7877659-7877678 | None:intergenic | 20.0% |
| !!! | TGTTTTATTTTTACGGTTAT+TGG | + | chr8.1:7877652-7877671 | None:intergenic | 20.0% |
| ! | AAAAACAAATCTAGATGGAT+CGG | + | chr8.1:7876444-7876463 | None:intergenic | 25.0% |
| ! | AAATTCCACTATGTTATAAC+AGG | + | chr8.1:7877498-7877517 | None:intergenic | 25.0% |
| ! | AATTCCACTATGTTATAACA+GGG | + | chr8.1:7877497-7877516 | None:intergenic | 25.0% |
| ! | ATATGAAAAAGGAGTAAAAG+AGG | + | chr8.1:7876535-7876554 | None:intergenic | 25.0% |
| ! | ATATGGGAACAAATGAATAA+AGG | - | chr8.1:7876831-7876850 | MS.gene68602:intron | 25.0% |
| ! | ATTGTTTCAGATACAATCAA+TGG | - | chr8.1:7876624-7876643 | MS.gene68602:CDS | 25.0% |
| ! | CAATTAGTATTGTCAAATAG+CGG | - | chr8.1:7877462-7877481 | MS.gene68602:CDS | 25.0% |
| ! | CTATGAAAAACAAATCTAGA+TGG | + | chr8.1:7876449-7876468 | None:intergenic | 25.0% |
| ! | GAAACTCAAATGTAATATGT+AGG | + | chr8.1:7877818-7877837 | None:intergenic | 25.0% |
| ! | GTTCCAATATTTGATATAGT+AGG | - | chr8.1:7877675-7877694 | MS.gene68602:intron | 25.0% |
| ! | TGGAAAATTGTAGTGAATTA+GGG | + | chr8.1:7876512-7876531 | None:intergenic | 25.0% |
| ! | TTTATTCATTTGTTCCCATA+TGG | + | chr8.1:7876832-7876851 | None:intergenic | 25.0% |
| !!! | GATTTGTTTTTCATAGTGAT+TGG | - | chr8.1:7876453-7876472 | MS.gene68602:CDS | 25.0% |
| !!! | TTTTCTTCTTGATTTGTTCA+AGG | + | chr8.1:7877989-7878008 | None:intergenic | 25.0% |
| AAATAGCTGTTATAGCATTG+CGG | - | chr8.1:7877568-7877587 | MS.gene68602:CDS | 30.0% | |
| AAGTGGTTTGAATTCATGTT+TGG | - | chr8.1:7877759-7877778 | MS.gene68602:CDS | 30.0% | |
| AATTTGAGCATACCATACAA+TGG | - | chr8.1:7877721-7877740 | MS.gene68602:CDS | 30.0% | |
| ACATTCACAATTTGAGTAGA+AGG | + | chr8.1:7877015-7877034 | None:intergenic | 30.0% | |
| AGCCCTACTATATCAAATAT+TGG | + | chr8.1:7877681-7877700 | None:intergenic | 30.0% | |
| ATCCAAGAAAATTGTGACAT+AGG | - | chr8.1:7877405-7877424 | MS.gene68602:intron | 30.0% | |
| ATGGAAAATTGTCCATTGTA+TGG | + | chr8.1:7877736-7877755 | None:intergenic | 30.0% | |
| ATTAGCACCTGACTAAAAAT+AGG | + | chr8.1:7877254-7877273 | None:intergenic | 30.0% | |
| ATTGTATGGTATGCTCAAAT+TGG | + | chr8.1:7877722-7877741 | None:intergenic | 30.0% | |
| CGCTATTTGACAATACTAAT+TGG | + | chr8.1:7877464-7877483 | None:intergenic | 30.0% | |
| GTGGAAAATTGTAGTGAATT+AGG | + | chr8.1:7876513-7876532 | None:intergenic | 30.0% | |
| TAAGGAAGAAAATAAAGGAC+TGG | - | chr8.1:7878055-7878074 | MS.gene68602:intron | 30.0% | |
| TCAAATTGTGAATGTAGAAC+TGG | - | chr8.1:7877020-7877039 | MS.gene68602:intron | 30.0% | |
| TGAATTCAAACCACTTCAAA+TGG | + | chr8.1:7877755-7877774 | None:intergenic | 30.0% | |
| TGTACTTGATAAGACCAAAA+AGG | - | chr8.1:7878019-7878038 | MS.gene68602:intron | 30.0% | |
| TTCAAACCAGTATTTGGATA+AGG | - | chr8.1:7878106-7878125 | MS.gene68602:intron | 30.0% | |
| TTTCCATTATCAGATTACTG+AGG | - | chr8.1:7877854-7877873 | MS.gene68602:intron | 30.0% | |
| ! | TGACAATACTAATTGGTGAT+TGG | + | chr8.1:7877457-7877476 | None:intergenic | 30.0% |
| !! | GTTGCTTTGGATTACAATTT+TGG | - | chr8.1:7876598-7876617 | MS.gene68602:CDS | 30.0% |
| !! | TAGAACTGGATGTCTTATTT+GGG | - | chr8.1:7877034-7877053 | MS.gene68602:intron | 30.0% |
| AACAAATCGTCATTGTTCTG+CGG | - | chr8.1:7877519-7877538 | MS.gene68602:CDS | 35.0% | |
| AGAAAATTGTGACATAGGAC+TGG | - | chr8.1:7877410-7877429 | MS.gene68602:CDS | 35.0% | |
| AGGAAACCTTATCCAAATAC+TGG | + | chr8.1:7878115-7878134 | None:intergenic | 35.0% | |
| CACATCAAAGAAGAGATCTT+CGG | - | chr8.1:7876911-7876930 | MS.gene68602:intron | 35.0% | |
| GAACCTCAGTAATCTGATAA+TGG | + | chr8.1:7877860-7877879 | None:intergenic | 35.0% | |
| GAAGAGTTCAAACCAGTATT+TGG | - | chr8.1:7878100-7878119 | MS.gene68602:intron | 35.0% | |
| TATGGTATGCTCAAATTGGT+TGG | + | chr8.1:7877718-7877737 | None:intergenic | 35.0% | |
| TGAAAAAGGAGTAAAAGAGG+TGG | + | chr8.1:7876532-7876551 | None:intergenic | 35.0% | |
| TGATAAGACCAAAAAGGACT+GGG | - | chr8.1:7878025-7878044 | MS.gene68602:intron | 35.0% | |
| TTGATAAGACCAAAAAGGAC+TGG | - | chr8.1:7878024-7878043 | MS.gene68602:intron | 35.0% | |
| ! | GGACAATTTTCCATTTGAAG+TGG | - | chr8.1:7877742-7877761 | MS.gene68602:CDS | 35.0% |
| ! | GTAGAACTGGATGTCTTATT+TGG | - | chr8.1:7877033-7877052 | MS.gene68602:intron | 35.0% |
| ! | GTCCTATGTCACAATTTTCT+TGG | + | chr8.1:7877410-7877429 | None:intergenic | 35.0% |
| ! | GTGGTTTTTGCAGTAGATTT+AGG | + | chr8.1:7876894-7876913 | None:intergenic | 35.0% |
| ! | TTTCATGCTAGTTGTTGCTT+TGG | - | chr8.1:7876585-7876604 | MS.gene68602:CDS | 35.0% |
| AAAACAGGATGTTACTGGTG+AGG | - | chr8.1:7876698-7876717 | MS.gene68602:CDS | 40.0% | |
| AAACAGGATGTTACTGGTGA+GGG | - | chr8.1:7876699-7876718 | MS.gene68602:CDS | 40.0% | |
| AAAGGACTGGGGAGAATTTA+AGG | - | chr8.1:7878037-7878056 | MS.gene68602:intron | 40.0% | |
| ACCTTGTGCATTTAGGCAAT+AGG | - | chr8.1:7877292-7877311 | MS.gene68602:intron | 40.0% | |
| ATGTTGTCAATTGCGGATCA+CGG | + | chr8.1:7877624-7877643 | None:intergenic | 40.0% | |
| CCTTGTGCATTTAGGCAATA+GGG | - | chr8.1:7877293-7877312 | MS.gene68602:intron | 40.0% | |
| CGAAGATCTCTTCTTTGATG+TGG | + | chr8.1:7876913-7876932 | None:intergenic | 40.0% | |
| GAACCAAAACAGGATGTTAC+TGG | - | chr8.1:7876693-7876712 | MS.gene68602:CDS | 40.0% | |
| GATAAGACCAAAAAGGACTG+GGG | - | chr8.1:7878026-7878045 | MS.gene68602:intron | 40.0% | |
| GCAACCCTGTTATAACATAG+TGG | - | chr8.1:7877490-7877509 | MS.gene68602:CDS | 40.0% | |
| GCTTGTGGATTCTGATTCAA+AGG | - | chr8.1:7877914-7877933 | MS.gene68602:intron | 40.0% | |
| GGAACCAATGTTGTCAATTG+CGG | + | chr8.1:7877631-7877650 | None:intergenic | 40.0% | |
| GGGAAAAACCTTGTGCATTT+AGG | - | chr8.1:7877285-7877304 | MS.gene68602:intron | 40.0% | |
| GTAATCTGTTCGCTGCAAAA+AGG | + | chr8.1:7878135-7878154 | None:intergenic | 40.0% | |
| TGATCCGCAATTGACAACAT+TGG | - | chr8.1:7877624-7877643 | MS.gene68602:intron | 40.0% | |
| TGTGGATTCTGATTCAAAGG+AGG | - | chr8.1:7877917-7877936 | MS.gene68602:CDS | 40.0% | |
| ! | AAATTCTCCCCAGTCCTTTT+TGG | + | chr8.1:7878036-7878055 | None:intergenic | 40.0% |
| ! | CTGACTAAAAATAGGAGCAC+TGG | + | chr8.1:7877246-7877265 | None:intergenic | 40.0% |
| ! | TCACCAGTAACATCCTGTTT+TGG | + | chr8.1:7876699-7876718 | None:intergenic | 40.0% |
| !! | AAGCTCAAGTTGATGCCATA+TGG | - | chr8.1:7876814-7876833 | MS.gene68602:intron | 40.0% |
| !! | AGCTCAAGTTGATGCCATAT+GGG | - | chr8.1:7876815-7876834 | MS.gene68602:intron | 40.0% |
| !! | CTGGATGTCTTATTTGGGAT+TGG | - | chr8.1:7877039-7877058 | MS.gene68602:intron | 40.0% |
| !!! | CAGTGCTCCTATTTTTAGTC+AGG | - | chr8.1:7877244-7877263 | MS.gene68602:intron | 40.0% |
| !!! | TAACATCCTGTTTTGGTTCC+AGG | + | chr8.1:7876692-7876711 | None:intergenic | 40.0% |
| AAGGCAGTACAAGTGACGAA+GGG | - | chr8.1:7877122-7877141 | MS.gene68602:intron | 45.0% | |
| CAATTGCGGATCACGGAAAA+TGG | + | chr8.1:7877617-7877636 | None:intergenic | 45.0% | |
| CCAAGACAACTGAATCTCCT+GGG | - | chr8.1:7877065-7877084 | MS.gene68602:intron | 45.0% | |
| CCAGGAGATTCAGTTGTCTT+GGG | + | chr8.1:7877067-7877086 | None:intergenic | 45.0% | |
| CCCTATTGCCTAAATGCACA+AGG | + | chr8.1:7877296-7877315 | None:intergenic | 45.0% | |
| CTGTCAAAGAACCTGTTCCA+GGG | - | chr8.1:7876661-7876680 | MS.gene68602:CDS | 45.0% | |
| TCTGTCAAAGAACCTGTTCC+AGG | - | chr8.1:7876660-7876679 | MS.gene68602:CDS | 45.0% | |
| TGCATTTAGGCAATAGGGAG+AGG | - | chr8.1:7877298-7877317 | MS.gene68602:intron | 45.0% | |
| TGTCAAAGAACCTGTTCCAG+GGG | - | chr8.1:7876662-7876681 | MS.gene68602:CDS | 45.0% | |
| TTTCGTTTCTGCCTCAAGCA+GGG | - | chr8.1:7877189-7877208 | MS.gene68602:intron | 45.0% | |
| ! | AAGGTTTTTCCCACTTCAGC+TGG | + | chr8.1:7877277-7877296 | None:intergenic | 45.0% |
| !! | TATATATATAAATATGAAAA+AGG | + | chr8.1:7876546-7876565 | None:intergenic | 5.0% |
| ACAGCGTCGTCTTGCATATC+TGG | + | chr8.1:7878212-7878231 | None:intergenic | 50.0% | |
| ACCGTGAATTTGAGCGAGAG+AGG | - | chr8.1:7878153-7878172 | MS.gene68602:intron | 50.0% | |
| ACTGAGGTTCGAGACTTTGC+TGG | - | chr8.1:7877870-7877889 | MS.gene68602:intron | 50.0% | |
| AGCACACCAGGTACACTTTG+AGG | + | chr8.1:7877100-7877119 | None:intergenic | 50.0% | |
| AGGTGCTAATCCAGCTGAAG+TGG | - | chr8.1:7877264-7877283 | MS.gene68602:intron | 50.0% | |
| CACGATTGGCATTGCAATCC+AGG | - | chr8.1:7878180-7878199 | MS.gene68602:intron | 50.0% | |
| CCCAAGACAACTGAATCTCC+TGG | - | chr8.1:7877064-7877083 | MS.gene68602:intron | 50.0% | |
| CCCAGGAGATTCAGTTGTCT+TGG | + | chr8.1:7877068-7877087 | None:intergenic | 50.0% | |
| CCCTCTCTCGCTCAAATTCA+CGG | + | chr8.1:7878157-7878176 | None:intergenic | 50.0% | |
| CCGTGAATTTGAGCGAGAGA+GGG | - | chr8.1:7878154-7878173 | MS.gene68602:intron | 50.0% | |
| CTTTCGTTTCTGCCTCAAGC+AGG | - | chr8.1:7877188-7877207 | MS.gene68602:intron | 50.0% | |
| GAAGGCAGTACAAGTGACGA+AGG | - | chr8.1:7877121-7877140 | MS.gene68602:intron | 50.0% | |
| GGAAAGCCTGGAACCAAAAC+AGG | - | chr8.1:7876683-7876702 | MS.gene68602:CDS | 50.0% | |
| GGATCACGGAAAATGGCAGT+TGG | + | chr8.1:7877610-7877629 | None:intergenic | 50.0% | |
| GGTGCTAATCCAGCTGAAGT+GGG | - | chr8.1:7877265-7877284 | MS.gene68602:intron | 50.0% | |
| TCAAAGTGTACCTGGTGTGC+TGG | - | chr8.1:7877099-7877118 | MS.gene68602:intron | 50.0% | |
| TGTGCTCCTCAAAGTGTACC+TGG | - | chr8.1:7877091-7877110 | MS.gene68602:intron | 50.0% | |
| TTCGTTTCTGCCTCAAGCAG+GGG | - | chr8.1:7877190-7877209 | MS.gene68602:intron | 50.0% | |
| TTGCATATCTGGTCGCTTCC+TGG | + | chr8.1:7878201-7878220 | None:intergenic | 50.0% | |
| ! | GAGAGAAAAAAGAGCGCGCA+AGG | + | chr8.1:7876418-7876437 | None:intergenic | 50.0% |
| !! | AAGAGCGCGCAAGGTTTTAC+CGG | + | chr8.1:7876409-7876428 | None:intergenic | 50.0% |
| AGGACAGCATCCACAGCAGA+AGG | + | chr8.1:7877969-7877988 | None:intergenic | 55.0% | |
| AGTGTACCTGGTGTGCTGGA+AGG | - | chr8.1:7877103-7877122 | MS.gene68602:intron | 55.0% | |
| CACAACTTTCCCCCTGCTTG+AGG | + | chr8.1:7877203-7877222 | None:intergenic | 55.0% | |
| CTCAAGCAGGGGGAAAGTTG+TGG | - | chr8.1:7877201-7877220 | MS.gene68602:intron | 55.0% | |
| TCGTTTCTGCCTCAAGCAGG+GGG | - | chr8.1:7877191-7877210 | MS.gene68602:intron | 55.0% | |
| ! | AGCAGAAGGTGCAGGAGCTT+TGG | + | chr8.1:7877955-7877974 | None:intergenic | 55.0% |
| ! | TTTGGTTCCAGGCTTTCCCC+TGG | + | chr8.1:7876681-7876700 | None:intergenic | 55.0% |
| ACCTGTTCCAGGGGAAAGCC+TGG | - | chr8.1:7876671-7876690 | MS.gene68602:CDS | 60.0% | |
| AGCTCCTGCACCTTCTGCTG+TGG | - | chr8.1:7877956-7877975 | MS.gene68602:CDS | 60.0% | |
| GCGAGAGAGGGATGCACGAT+TGG | - | chr8.1:7878166-7878185 | MS.gene68602:intron | 60.0% | |
| GTACTGCCTTCCAGCACACC+AGG | + | chr8.1:7877112-7877131 | None:intergenic | 60.0% | |
| TCCAGGCTTTCCCCTGGAAC+AGG | + | chr8.1:7876675-7876694 | None:intergenic | 60.0% | |
| TGCTGCTGCTGCTCTTGCAG+CGG | - | chr8.1:7877153-7877172 | MS.gene68602:intron | 60.0% | |
| ! | AGCGCGCAAGGTTTTACCGG+CGG | + | chr8.1:7876406-7876425 | None:intergenic | 60.0% |
| ! | CTTTGAGGAGCACACTGCCC+AGG | + | chr8.1:7877085-7877104 | None:intergenic | 60.0% |
| ! | GCATCCACAGCAGAAGGTGC+AGG | + | chr8.1:7877963-7877982 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 7876396 | 7878235 | 7876396 | ID=MS.gene68602 |
| chr8.1 | mRNA | 7876396 | 7878235 | 7876396 | ID=MS.gene68602.t1;Parent=MS.gene68602 |
| chr8.1 | exon | 7878223 | 7878235 | 7878223 | ID=MS.gene68602.t1.exon1;Parent=MS.gene68602.t1 |
| chr8.1 | CDS | 7878223 | 7878235 | 7878223 | ID=cds.MS.gene68602.t1;Parent=MS.gene68602.t1 |
| chr8.1 | exon | 7877917 | 7877997 | 7877917 | ID=MS.gene68602.t1.exon2;Parent=MS.gene68602.t1 |
| chr8.1 | CDS | 7877917 | 7877997 | 7877917 | ID=cds.MS.gene68602.t1;Parent=MS.gene68602.t1 |
| chr8.1 | exon | 7877699 | 7877823 | 7877699 | ID=MS.gene68602.t1.exon3;Parent=MS.gene68602.t1 |
| chr8.1 | CDS | 7877699 | 7877823 | 7877699 | ID=cds.MS.gene68602.t1;Parent=MS.gene68602.t1 |
| chr8.1 | exon | 7877409 | 7877594 | 7877409 | ID=MS.gene68602.t1.exon4;Parent=MS.gene68602.t1 |
| chr8.1 | CDS | 7877409 | 7877594 | 7877409 | ID=cds.MS.gene68602.t1;Parent=MS.gene68602.t1 |
| chr8.1 | exon | 7876396 | 7876764 | 7876396 | ID=MS.gene68602.t1.exon5;Parent=MS.gene68602.t1 |
| chr8.1 | CDS | 7876396 | 7876764 | 7876396 | ID=cds.MS.gene68602.t1;Parent=MS.gene68602.t1 |
| Gene Sequence |
| Protein sequence |
