AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene68694

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68694.t1 MTR_2g449850 78.641 103 22 0 1 103 362 464 1.01e-51 169
MS.gene68694.t1 MTR_3g434850 72.549 102 28 0 1 102 354 455 6.95e-49 162
MS.gene68694.t1 MTR_1g040370 73.267 101 27 0 1 101 315 415 2.34e-45 152
MS.gene68694.t1 MTR_3g498755 63.366 101 37 0 1 101 345 445 2.46e-42 145
MS.gene68694.t1 MTR_1g102130 65.347 101 35 0 1 101 390 490 2.73e-42 145
MS.gene68694.t1 MTR_8g099930 61.165 103 40 0 1 103 362 464 9.42e-41 141
MS.gene68694.t1 MTR_7g021130 59.406 101 41 0 1 101 357 457 2.74e-38 134
MS.gene68694.t1 MTR_3g090150 48.077 104 54 0 1 104 363 466 2.27e-31 116
MS.gene68694.t1 MTR_3g090130 47.273 110 57 1 1 109 356 465 2.33e-31 115
MS.gene68694.t1 MTR_5g072570 46.154 104 56 0 1 104 361 464 1.09e-28 108
MS.gene68694.t1 MTR_2g062990 40.816 98 53 2 5 102 371 463 5.58e-20 84.7
MS.gene68694.t1 MTR_7g013790 47.423 97 46 2 5 101 373 464 7.56e-20 84.3
MS.gene68694.t1 MTR_2g062980 40.816 98 53 2 5 102 371 463 9.76e-20 84.0
MS.gene68694.t1 MTR_2g063000 39.796 98 54 2 5 102 341 433 1.49e-19 83.2
MS.gene68694.t1 MTR_2g012860 41.837 98 52 2 5 102 382 474 1.84e-19 83.2
MS.gene68694.t1 MTR_2g063000 39.796 98 54 2 5 102 372 464 2.03e-19 82.8
MS.gene68694.t1 MTR_1g095560 39.000 100 56 2 5 104 365 459 6.12e-19 81.6
MS.gene68694.t1 MTR_4g122960 38.000 100 57 2 5 104 384 478 8.61e-19 81.3
MS.gene68694.t1 MTR_4g089155 38.384 99 56 2 5 103 394 487 1.14e-18 80.9
MS.gene68694.t1 MTR_2g081620 38.776 98 55 2 5 102 372 464 1.37e-18 80.5
MS.gene68694.t1 MTR_4g122950 38.000 100 57 2 5 104 386 480 2.16e-18 80.1
MS.gene68694.t1 MTR_2g018600 36.458 96 57 1 5 100 378 469 5.57e-18 79.0
MS.gene68694.t1 MTR_4g075150 40.594 101 55 2 1 101 366 461 1.08e-17 78.2
MS.gene68694.t1 MTR_4g075150 40.594 101 55 2 1 101 368 463 1.08e-17 78.2
MS.gene68694.t1 MTR_1g095540 37.374 99 57 2 5 103 365 458 1.79e-17 77.4
MS.gene68694.t1 MTR_3g100420 37.500 96 56 1 5 100 405 496 2.42e-17 77.0
MS.gene68694.t1 MTR_2g018590 35.417 96 58 1 5 100 378 469 2.73e-17 77.0
MS.gene68694.t1 MTR_2g012850 38.384 99 56 2 5 103 374 467 9.15e-17 75.5
MS.gene68694.t1 MTR_3g079600 40.404 99 53 3 5 103 400 492 1.42e-16 75.1
MS.gene68694.t1 MTR_4g021520 35.417 96 58 1 5 100 379 470 1.94e-16 74.3
MS.gene68694.t1 MTR_4g021510 40.230 87 48 1 5 91 378 460 1.98e-16 74.3
MS.gene68694.t1 MTR_3g079590 40.000 100 54 3 5 104 399 492 2.52e-16 74.3
MS.gene68694.t1 MTR_4g021490 36.264 91 54 1 5 95 379 465 2.98e-16 73.9
MS.gene68694.t1 MTR_0003s0560 37.624 101 59 1 1 101 391 487 3.15e-16 73.9
MS.gene68694.t1 MTR_0075s0010 72.917 48 13 0 1 48 277 324 3.62e-16 73.2
MS.gene68694.t1 MTR_3g079570 39.394 99 55 2 5 103 399 492 4.64e-16 73.6
MS.gene68694.t1 MTR_1g021020 37.113 97 56 2 5 101 396 487 1.72e-15 71.6
MS.gene68694.t1 MTR_2g018630 36.458 96 57 1 5 100 269 360 1.78e-15 71.6
MS.gene68694.t1 MTR_1g021010 37.113 97 56 2 5 101 395 486 1.79e-15 71.6
MS.gene68694.t1 MTR_8g011350 35.417 96 58 1 5 100 404 495 1.99e-15 71.6
MS.gene68694.t1 MTR_2g018630 36.458 96 57 1 5 100 374 465 2.31e-15 71.2
MS.gene68694.t1 MTR_1g020090 37.113 97 56 2 5 101 406 497 2.52e-15 71.2
MS.gene68694.t1 MTR_2g039800 66.667 45 15 0 56 100 50 94 3.37e-15 66.6
MS.gene68694.t1 MTR_3g079560 36.364 99 58 2 5 103 399 492 5.90e-15 70.5
MS.gene68694.t1 MTR_3g034290 33.962 106 66 1 1 106 394 495 8.30e-15 69.7
MS.gene68694.t1 MTR_4g021535 34.375 96 59 1 5 100 375 466 1.09e-14 69.3
MS.gene68694.t1 MTR_7g080180 34.375 96 59 1 5 100 407 498 1.10e-14 69.7
MS.gene68694.t1 MTR_4g021500 34.444 90 55 1 5 94 379 464 1.14e-14 69.7
MS.gene68694.t1 MTR_4g021500 33.333 96 60 1 5 100 796 887 4.50e-14 67.8
MS.gene68694.t1 MTR_4g021500 34.444 90 55 1 5 94 379 464 1.22e-14 69.3
MS.gene68694.t1 MTR_4g021500 33.333 96 60 1 5 100 814 905 4.83e-14 67.8
MS.gene68694.t1 MTR_4g021535 35.165 91 55 1 5 95 328 414 1.30e-14 69.3
MS.gene68694.t1 MTR_7g051430 33.333 93 58 1 5 97 404 492 1.97e-14 68.9
MS.gene68694.t1 MTR_3g079620 35.185 108 56 3 5 103 398 500 2.26e-14 68.6
MS.gene68694.t1 MTR_4g021530 35.417 96 58 1 5 100 379 470 2.50e-14 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68694.t1 AT2G33530 63.366 101 37 0 1 101 362 462 1.70e-38 135
MS.gene68694.t1 AT1G28110 61.386 101 39 0 1 101 358 458 1.26e-37 132
MS.gene68694.t1 AT1G28110 61.386 101 39 0 1 101 358 458 1.26e-37 132
MS.gene68694.t1 AT1G43780 50.962 104 51 0 1 104 370 473 9.10e-30 111
MS.gene68694.t1 AT5G42230 44.037 109 61 0 2 110 361 469 1.51e-28 108
MS.gene68694.t1 AT5G42230 44.037 109 61 0 2 110 361 469 1.51e-28 108
MS.gene68694.t1 AT5G42240 44.762 105 58 0 1 105 364 468 4.45e-28 107
MS.gene68694.t1 AT2G12480 41.905 105 61 0 2 106 332 436 1.11e-26 103
MS.gene68694.t1 AT2G12480 41.905 105 61 0 2 106 334 438 1.13e-26 103
MS.gene68694.t1 AT2G12480 41.905 105 61 0 2 106 358 462 1.15e-26 103
MS.gene68694.t1 AT2G12480 41.509 106 61 1 2 106 332 437 5.39e-25 98.6
MS.gene68694.t1 AT2G05850 41.748 103 56 1 1 103 388 486 3.99e-23 93.6
MS.gene68694.t1 AT3G52010 39.423 104 59 1 1 104 388 487 6.25e-22 90.1
MS.gene68694.t1 AT4G30610 45.455 99 49 2 5 103 371 464 3.83e-21 87.8
MS.gene68694.t1 AT5G08260 41.837 98 53 1 5 102 384 477 4.33e-20 85.1
MS.gene68694.t1 AT3G52000 38.462 104 60 1 1 104 383 482 4.35e-20 85.1
MS.gene68694.t1 AT2G24010 46.465 99 48 3 5 103 371 464 4.91e-20 84.7
MS.gene68694.t1 AT2G24010 46.465 99 48 3 5 103 375 468 5.91e-20 84.3
MS.gene68694.t1 AT2G24010 46.465 99 48 3 5 103 360 453 6.55e-20 84.3
MS.gene68694.t1 AT3G17180 36.364 99 59 1 5 103 383 477 1.45e-19 83.6
MS.gene68694.t1 AT2G24000 47.000 100 46 3 5 103 307 400 1.69e-19 82.8
MS.gene68694.t1 AT3G63470 40.566 106 59 1 1 106 401 502 1.94e-19 83.2
MS.gene68694.t1 AT2G24000 47.000 100 46 3 5 103 370 463 3.32e-19 82.4
MS.gene68694.t1 AT4G30810 38.318 107 61 2 5 111 371 472 3.95e-19 82.0
MS.gene68694.t1 AT1G11080 41.414 99 53 2 5 103 398 491 2.10e-18 80.1
MS.gene68694.t1 AT1G11080 41.414 99 53 2 5 103 398 491 2.11e-18 80.1
MS.gene68694.t1 AT3G02110 44.444 99 50 3 5 103 380 473 4.73e-18 79.3
MS.gene68694.t1 AT4G12910 40.625 96 53 1 5 100 406 497 6.83e-18 78.6
MS.gene68694.t1 AT4G15100 40.404 99 54 2 5 103 390 483 8.07e-18 78.6
MS.gene68694.t1 AT1G61130 41.414 99 53 2 5 103 369 462 1.03e-17 78.2
MS.gene68694.t1 AT5G23210 43.564 101 52 2 2 102 306 401 3.55e-17 76.6
MS.gene68694.t1 AT5G23210 43.564 101 52 2 2 102 305 400 4.15e-17 76.3
MS.gene68694.t1 AT2G22960 36.559 93 54 2 8 100 97 184 4.61e-17 73.6
MS.gene68694.t1 AT5G23210 43.564 101 52 2 2 102 401 496 6.92e-17 75.9
MS.gene68694.t1 AT1G73280 37.634 93 53 2 8 100 227 314 3.20e-16 73.2
MS.gene68694.t1 AT1G73280 37.634 93 53 2 8 100 252 339 3.42e-16 73.6
MS.gene68694.t1 AT5G36180 37.634 93 53 2 8 100 252 339 4.26e-16 73.2
MS.gene68694.t1 AT5G36180 37.634 93 53 2 8 100 252 339 4.26e-16 73.2
MS.gene68694.t1 AT1G73280 37.634 93 53 2 8 100 354 441 5.06e-16 73.2
MS.gene68694.t1 AT5G36180 37.634 93 53 2 8 100 354 441 6.22e-16 73.2
MS.gene68694.t1 AT2G22990 35.484 93 55 2 8 100 232 319 1.08e-15 72.0
MS.gene68694.t1 AT2G22990 35.484 93 55 2 8 100 346 433 1.57e-15 72.0
MS.gene68694.t1 AT1G73300 36.559 93 54 2 8 100 354 441 1.65e-15 72.0
MS.gene68694.t1 AT1G73300 36.559 93 54 2 8 100 354 441 1.65e-15 72.0
MS.gene68694.t1 AT3G25420 35.417 96 58 1 5 100 403 494 2.32e-15 71.6
MS.gene68694.t1 AT2G22920 35.484 93 55 2 8 100 169 256 3.13e-15 70.1
MS.gene68694.t1 AT2G35780 37.113 97 56 2 5 101 360 451 3.14e-15 71.2
MS.gene68694.t1 AT2G22990 34.409 93 56 2 8 100 232 319 3.72e-15 70.5
MS.gene68694.t1 AT2G22970 35.484 93 55 2 8 100 346 433 5.69e-15 70.5
MS.gene68694.t1 AT3G07990 32.323 99 62 2 5 103 366 459 6.00e-15 70.5
MS.gene68694.t1 AT2G22990 34.409 93 56 2 8 100 337 424 8.07e-15 69.7
MS.gene68694.t1 AT2G22980 34.783 92 55 2 9 100 344 430 8.87e-15 69.7
MS.gene68694.t1 AT2G22920 35.484 93 55 2 8 100 348 435 1.25e-14 69.3
MS.gene68694.t1 AT3G52020 37.234 94 55 1 10 103 411 500 1.50e-14 69.3
MS.gene68694.t1 AT3G10450 34.783 92 55 2 9 100 308 394 1.66e-14 68.9
MS.gene68694.t1 AT1G73290 33.333 93 57 2 8 100 351 438 2.07e-14 68.9
MS.gene68694.t1 AT1G73270 34.409 93 56 2 8 100 354 441 2.30e-14 68.6
MS.gene68694.t1 AT1G73270 34.409 93 56 2 8 100 354 441 2.37e-14 68.6
MS.gene68694.t1 AT3G10450 34.783 92 55 2 9 100 351 437 2.44e-14 68.6
MS.gene68694.t1 AT2G23000 35.484 93 55 2 8 100 350 437 2.90e-14 68.2
MS.gene68694.t1 AT2G23000 35.484 93 55 2 8 100 350 437 2.90e-14 68.2
MS.gene68694.t1 AT1G73310 34.783 92 55 2 9 100 355 441 2.97e-14 68.2
MS.gene68694.t1 AT5G09640 37.634 93 52 3 9 100 378 465 4.00e-14 67.8
MS.gene68694.t1 AT1G33540 34.444 90 54 2 11 100 337 421 6.79e-14 67.4
MS.gene68694.t1 AT2G35770 34.653 101 60 3 5 103 364 460 8.03e-14 67.0
MS.gene68694.t1 AT1G33540 34.444 90 54 2 11 100 380 464 8.04e-14 67.0
MS.gene68694.t1 AT2G23010 34.409 93 56 2 8 100 350 437 1.46e-13 66.2
MS.gene68694.t1 AT3G12203 32.609 92 57 2 9 100 293 379 4.46e-13 64.7
MS.gene68694.t1 AT3G12203 32.609 92 57 2 9 100 351 437 6.49e-13 64.3
MS.gene68694.t1 AT3G12203 32.609 92 57 2 9 100 330 416 6.51e-13 64.3
MS.gene68694.t1 AT2G23010 33.333 93 57 2 8 100 350 437 6.56e-13 64.3
MS.gene68694.t1 AT3G12240 35.870 92 54 2 9 100 350 436 3.06e-12 62.4
MS.gene68694.t1 AT3G12230 34.783 92 55 2 9 100 349 435 3.98e-12 62.4
MS.gene68694.t1 AT3G12220 33.696 92 56 2 9 100 297 383 4.04e-11 59.3
MS.gene68694.t1 AT3G12220 33.696 92 56 2 9 100 319 405 4.90e-11 58.9
MS.gene68694.t1 AT3G12220 33.696 92 56 2 9 100 349 435 7.14e-11 58.5

Find 41 sgRNAs with CRISPR-Local

Find 87 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCGACTCGGTCGTTAATAA+AGG 0.275520 2.3:-38929765 MS.gene68694:CDS
GCTCGCGCAGGCTGAGAAAA+TGG 0.282066 2.3:+38929500 None:intergenic
CACTTGTTAAATCAGGTGTT+CGG 0.322671 2.3:-38929941 MS.gene68694:CDS
TTCTCAGCCTGCGCGAGCTT+TGG 0.334267 2.3:-38929495 MS.gene68694:CDS
TTCTCCCTGCAGTGGAGATC+AGG 0.347443 2.3:-38929807 MS.gene68694:intron
TTTATCATTTGCAACAATAA+GGG 0.347974 2.3:-38929540 MS.gene68694:CDS
AACCCTACAATCTCTATGTT+AGG 0.358096 2.3:-38929966 None:intergenic
GTGTTCGGGTTCTAGCTTAC+AGG 0.380620 2.3:-38929926 MS.gene68694:intron
CCAACTAGTAGTGAATTTGT+TGG 0.402491 2.3:-38929437 MS.gene68694:intron
CAACAGACTCGTATAGAGTT+TGG 0.407535 2.3:-38929715 MS.gene68694:CDS
GCAGGATGGACGGAGGGTTA+TGG 0.411732 2.3:-38929569 MS.gene68694:CDS
TTAGGGCCACTTGTTAAATC+AGG 0.413613 2.3:-38929948 MS.gene68694:CDS
GCGACTCGGTCGTTAATAAA+GGG 0.419002 2.3:-38929764 MS.gene68694:CDS
CCAACAAATTCACTACTAGT+TGG 0.436960 2.3:+38929437 None:intergenic
TATTTAATTGTTCAGGTGGC+AGG 0.438998 2.3:-38929587 MS.gene68694:intron
GCGAGCTTTGGTACTATTCA+AGG 0.441740 2.3:-38929483 MS.gene68694:CDS
AAAGGGATTGGCGAAGGACC+TGG 0.464544 2.3:-38929747 MS.gene68694:CDS
ACTTGTTAAATCAGGTGTTC+GGG 0.504140 2.3:-38929940 MS.gene68694:CDS
GGTACTATTCAAGGCATTTG+TGG 0.519304 2.3:-38929474 MS.gene68694:CDS
ACCCTACAATCTCTATGTTA+GGG 0.521246 2.3:-38929965 None:intergenic
TCGGTCGTTAATAAAGGGAT+TGG 0.528670 2.3:-38929759 MS.gene68694:CDS
CTATTCAAGGCATTTGTGGA+AGG 0.529889 2.3:-38929470 MS.gene68694:CDS
CACACGAACTACCGAACACC+CGG 0.539518 2.3:+38928856 None:intergenic
CTCGTATAGAGTTTGGTATG+AGG 0.542677 2.3:-38929708 MS.gene68694:CDS
GTGGCTTGAAGCGAGATCCT+AGG 0.551039 2.3:-38928834 None:intergenic
AGTTTGGTATGAGGGTAGCC+AGG 0.551338 2.3:-38929699 MS.gene68694:intron
TTATCATTTGCAACAATAAG+GGG 0.561572 2.3:-38929539 MS.gene68694:CDS
GAACACCCGGTGAAAATGCA+AGG 0.562560 2.3:+38928869 None:intergenic
TGTTCAGGTGGCAGGATGGA+CGG 0.564756 2.3:-38929579 MS.gene68694:intron
TCGTATAGAGTTTGGTATGA+GGG 0.567116 2.3:-38929707 MS.gene68694:CDS
AAGGGATTGGCGAAGGACCT+GGG 0.569152 2.3:-38929746 MS.gene68694:CDS
TATTCAAGGCATTTGTGGAA+GGG 0.571085 2.3:-38929469 MS.gene68694:CDS
AGTCTGTTGCAGTCAATCCC+AGG 0.579038 2.3:+38929729 None:intergenic
TCAGGTGGCAGGATGGACGG+AGG 0.589632 2.3:-38929576 MS.gene68694:intron
CAGGTGGCAGGATGGACGGA+GGG 0.591184 2.3:-38929575 MS.gene68694:CDS
AATAGTACCAAAGCTCGCGC+AGG 0.591962 2.3:+38929488 None:intergenic
CGAACACCTGATTTAACAAG+TGG 0.597432 2.3:+38929942 None:intergenic
GTTAATAAAGGGATTGGCGA+AGG 0.601409 2.3:-38929753 MS.gene68694:CDS
GGTGTTCGGTAGTTCGTGTG+TGG 0.628328 2.3:-38928853 MS.gene68694:CDS
TAATTGTTCAGGTGGCAGGA+TGG 0.638374 2.3:-38929583 MS.gene68694:intron
AACACCCGGTGAAAATGCAA+GGG 0.648177 2.3:+38928870 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAAATTAAAAATTTTAAAGT+AGG - chr2.3:38929510-38929529 MS.gene68694:CDS 10.0%
!!! CTACTTTAAAATTTTTAATT+TGG + chr2.3:38929512-38929531 None:intergenic 10.0%
!! TTAATGATACATTATATTAG+TGG - chr2.3:38929609-38929628 MS.gene68694:intron 15.0%
!!! AAAAAATTTCTCAGATTTTA+TGG - chr2.3:38929738-38929757 MS.gene68694:CDS 15.0%
!!! AAAAATTTCTCAGATTTTAT+GGG - chr2.3:38929739-38929758 MS.gene68694:CDS 15.0%
!!! ATTTTGATATTTAATTGTTC+AGG - chr2.3:38929192-38929211 MS.gene68694:intron 15.0%
!! ATGTATATAAGTAACTTAGT+TGG + chr2.3:38928905-38928924 None:intergenic 20.0%
!! TATCCTATTAAATATTTACC+TGG + chr2.3:38929108-38929127 None:intergenic 20.0%
!! TTTATCATTTGCAACAATAA+GGG - chr2.3:38929246-38929265 MS.gene68694:intron 20.0%
!!! AAAATTTCTCAGATTTTATG+GGG - chr2.3:38929740-38929759 MS.gene68694:CDS 20.0%
!!! TGATTATCAATGGATTTTTT+TGG - chr2.3:38929810-38929829 MS.gene68694:intron 20.0%
!!! TTTTATCATTTGCAACAATA+AGG - chr2.3:38929245-38929264 MS.gene68694:intron 20.0%
! CATATACAGAATCACAAAAT+AGG + chr2.3:38929414-38929433 None:intergenic 25.0%
! GAGAAAAAAACAAAAAGCTT+TGG + chr2.3:38928964-38928983 None:intergenic 25.0%
! GGTTTAGCAATAGATAATAA+TGG + chr2.3:38929566-38929585 None:intergenic 25.0%
! TAATACTTCGTGTCAATAAA+AGG + chr2.3:38929638-38929657 None:intergenic 25.0%
! TAGCCAGGTAAATATTTAAT+AGG - chr2.3:38929102-38929121 MS.gene68694:intron 25.0%
! TATATAAGTAACTTAGTTGG+AGG + chr2.3:38928902-38928921 None:intergenic 25.0%
! TTATCATTTGCAACAATAAG+GGG - chr2.3:38929247-38929266 MS.gene68694:intron 25.0%
! TTGATATTTAATTGTTCAGG+TGG - chr2.3:38929195-38929214 MS.gene68694:intron 25.0%
!! ATGACATTGATTGATTAAGT+AGG + chr2.3:38928934-38928953 None:intergenic 25.0%
!!! CATATTTCTTCAAGTTGTTT+AGG - chr2.3:38929440-38929459 MS.gene68694:CDS 25.0%
!!! TATCAATGGATTTTTTTGGT+GGG - chr2.3:38929814-38929833 MS.gene68694:intron 25.0%
!!! TTATCAATGGATTTTTTTGG+TGG - chr2.3:38929813-38929832 MS.gene68694:intron 25.0%
CAATTAAGACTTTGTGCAAA+AGG - chr2.3:38929849-38929868 MS.gene68694:intron 30.0%
! GGTAGTTTGATGATTATCAA+TGG - chr2.3:38929800-38929819 MS.gene68694:intron 30.0%
! TAAAGTAGGCTTTTACCTTT+GGG - chr2.3:38929524-38929543 MS.gene68694:CDS 30.0%
! TTAAAGTAGGCTTTTACCTT+TGG - chr2.3:38929523-38929542 MS.gene68694:CDS 30.0%
!! TATAGCAACTTGCTAGATAA+AGG + chr2.3:38929587-38929606 None:intergenic 30.0%
!!! CTACTATTTTTGTATCCCAA+AGG + chr2.3:38929542-38929561 None:intergenic 30.0%
CCAACAAATTCACTACTAGT+TGG + chr2.3:38929352-38929371 None:intergenic 35.0%
CCAACTAGTAGTGAATTTGT+TGG - chr2.3:38929349-38929368 MS.gene68694:intron 35.0%
CTGTAGATTCTTCTCAGATT+AGG - chr2.3:38929709-38929728 MS.gene68694:CDS 35.0%
TATTTAATTGTTCAGGTGGC+AGG - chr2.3:38929199-38929218 MS.gene68694:intron 35.0%
TCATAATGAGTGATCTCAGA+AGG - chr2.3:38929767-38929786 MS.gene68694:CDS 35.0%
TCGTATAGAGTTTGGTATGA+GGG - chr2.3:38929079-38929098 MS.gene68694:intron 35.0%
TTGCCAGATAAAAGAGCAAA+TGG + chr2.3:38929678-38929697 None:intergenic 35.0%
! ACTTGTTAAATCAGGTGTTC+GGG - chr2.3:38928846-38928865 MS.gene68694:CDS 35.0%
! CACTTGTTAAATCAGGTGTT+CGG - chr2.3:38928845-38928864 MS.gene68694:CDS 35.0%
! TATTCAAGGCATTTGTGGAA+GGG - chr2.3:38929317-38929336 MS.gene68694:intron 35.0%
!!! AAATACCCTTTTTTGCGACT+CGG - chr2.3:38929008-38929027 MS.gene68694:intron 35.0%
AAAGAGCAAATGGCAGTGAT+AGG + chr2.3:38929668-38929687 None:intergenic 40.0%
AGGGACATCTTCACCTAATT+CGG + chr2.3:38929900-38929919 None:intergenic 40.0%
CAACAGACTCGTATAGAGTT+TGG - chr2.3:38929071-38929090 MS.gene68694:intron 40.0%
CGAACACCTGATTTAACAAG+TGG + chr2.3:38928847-38928866 None:intergenic 40.0%
CTCGTATAGAGTTTGGTATG+AGG - chr2.3:38929078-38929097 MS.gene68694:intron 40.0%
TCGGTCGTTAATAAAGGGAT+TGG - chr2.3:38929027-38929046 MS.gene68694:intron 40.0%
TGCTAAAATCCTTGTCCGTT+TGG - chr2.3:38929872-38929891 MS.gene68694:intron 40.0%
! CTATTCAAGGCATTTGTGGA+AGG - chr2.3:38929316-38929335 MS.gene68694:intron 40.0%
! GGTACTATTCAAGGCATTTG+TGG - chr2.3:38929312-38929331 MS.gene68694:intron 40.0%
! GTTAATAAAGGGATTGGCGA+AGG - chr2.3:38929033-38929052 MS.gene68694:intron 40.0%
! TGAGTGATCTCAGAAGGTAT+TGG - chr2.3:38929773-38929792 MS.gene68694:CDS 40.0%
! TTAGGGCCACTTGTTAAATC+AGG - chr2.3:38928838-38928857 MS.gene68694:CDS 40.0%
!! ATCTCAGAAGGTATTGGATG+AGG - chr2.3:38929779-38929798 MS.gene68694:CDS 40.0%
!! CTGCCATTTGCTCTTTTATC+TGG - chr2.3:38929672-38929691 MS.gene68694:intron 40.0%
!!! TTGTTTTTTTCTCCCTGCAG+TGG - chr2.3:38928971-38928990 MS.gene68694:intron 40.0%
AACACCCGGTGAAAATGCAA+GGG + chr2.3:38929919-38929938 None:intergenic 45.0%
AACGACCGAGTCGCAAAAAA+GGG + chr2.3:38929016-38929035 None:intergenic 45.0%
TAACGACCGAGTCGCAAAAA+AGG + chr2.3:38929017-38929036 None:intergenic 45.0%
TAATTGTTCAGGTGGCAGGA+TGG - chr2.3:38929203-38929222 MS.gene68694:intron 45.0%
TCACCTAATTCGGAGCCAAA+CGG + chr2.3:38929890-38929909 None:intergenic 45.0%
! ATGTCCCTTGCATTTTCACC+GGG - chr2.3:38929912-38929931 MS.gene68694:intron 45.0%
! GATGTCCCTTGCATTTTCAC+CGG - chr2.3:38929911-38929930 MS.gene68694:intron 45.0%
! GCGAGCTTTGGTACTATTCA+AGG - chr2.3:38929303-38929322 MS.gene68694:intron 45.0%
! TTGCATTTTCACCGGGTGTT+CGG - chr2.3:38929919-38929938 MS.gene68694:intron 45.0%
!! GCGACTCGGTCGTTAATAAA+GGG - chr2.3:38929022-38929041 MS.gene68694:intron 45.0%
!! TGCGACTCGGTCGTTAATAA+AGG - chr2.3:38929021-38929040 MS.gene68694:intron 45.0%
AATAGTACCAAAGCTCGCGC+AGG + chr2.3:38929301-38929320 None:intergenic 50.0%
AATTCGGAGCCAAACGGACA+AGG + chr2.3:38929884-38929903 None:intergenic 50.0%
AGTCTGTTGCAGTCAATCCC+AGG + chr2.3:38929060-38929079 None:intergenic 50.0%
AGTTTGGTATGAGGGTAGCC+AGG - chr2.3:38929087-38929106 MS.gene68694:intron 50.0%
GAACACCCGGTGAAAATGCA+AGG + chr2.3:38929920-38929939 None:intergenic 50.0%
! TGTCCGTTTGGCTCCGAATT+AGG - chr2.3:38929884-38929903 MS.gene68694:intron 50.0%
!! GTGTTCGGGTTCTAGCTTAC+AGG - chr2.3:38928860-38928879 MS.gene68694:CDS 50.0%
AGAGTCCTGATCTCCACTGC+AGG + chr2.3:38928987-38929006 None:intergenic 55.0%
CACACGAACTACCGAACACC+CGG + chr2.3:38929933-38929952 None:intergenic 55.0%
GAGTCCTGATCTCCACTGCA+GGG + chr2.3:38928986-38929005 None:intergenic 55.0%
GGTGTTCGGTAGTTCGTGTG+TGG - chr2.3:38929933-38929952 MS.gene68694:CDS 55.0%
TGTTCAGGTGGCAGGATGGA+CGG - chr2.3:38929207-38929226 MS.gene68694:intron 55.0%
TTCTCCCTGCAGTGGAGATC+AGG - chr2.3:38928979-38928998 MS.gene68694:intron 55.0%
! AAAGGGATTGGCGAAGGACC+TGG - chr2.3:38929039-38929058 MS.gene68694:intron 55.0%
! AAGGGATTGGCGAAGGACCT+GGG - chr2.3:38929040-38929059 MS.gene68694:intron 55.0%
GCAGGATGGACGGAGGGTTA+TGG - chr2.3:38929217-38929236 MS.gene68694:intron 60.0%
GCTCGCGCAGGCTGAGAAAA+TGG + chr2.3:38929289-38929308 None:intergenic 60.0%
TTCTCAGCCTGCGCGAGCTT+TGG - chr2.3:38929291-38929310 MS.gene68694:intron 60.0%
CAGGTGGCAGGATGGACGGA+GGG - chr2.3:38929211-38929230 MS.gene68694:intron 65.0%
TCAGGTGGCAGGATGGACGG+AGG - chr2.3:38929210-38929229 MS.gene68694:intron 65.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 38928835 38929973 38928835 ID=MS.gene68694
chr2.3 mRNA 38928835 38929973 38928835 ID=MS.gene68694.t1;Parent=MS.gene68694
chr2.3 exon 38929927 38929973 38929927 ID=MS.gene68694.t1.exon1;Parent=MS.gene68694.t1
chr2.3 CDS 38929927 38929973 38929927 ID=cds.MS.gene68694.t1;Parent=MS.gene68694.t1
chr2.3 exon 38929700 38929817 38929700 ID=MS.gene68694.t1.exon2;Parent=MS.gene68694.t1
chr2.3 CDS 38929700 38929817 38929700 ID=cds.MS.gene68694.t1;Parent=MS.gene68694.t1
chr2.3 exon 38929438 38929594 38929438 ID=MS.gene68694.t1.exon3;Parent=MS.gene68694.t1
chr2.3 CDS 38929438 38929594 38929438 ID=cds.MS.gene68694.t1;Parent=MS.gene68694.t1
chr2.3 exon 38928835 38928902 38928835 ID=MS.gene68694.t1.exon4;Parent=MS.gene68694.t1
chr2.3 CDS 38928835 38928902 38928835 ID=cds.MS.gene68694.t1;Parent=MS.gene68694.t1
Gene Sequence

>MS.gene68694

ATGTTAGGGCCACTTGTTAAATCAGGTGTTCGGGTTCTAGCTTACAGGTAACAATCTGTGTTTTCCTCCAACTAAGTTACTTATATACATTGCATTCCTACTTAATCAATCAATGTCATATACTAACCAAAGCTTTTTGTTTTTTTCTCCCTGCAGTGGAGATCAGGACTCTGAAATACCCTTTTTTGCGACTCGGTCGTTAATAAAGGGATTGGCGAAGGACCTGGGATTGACTGCAACAGACTCGTATAGAGTTTGGTATGAGGGTAGCCAGGTAAATATTTAATAGGATATGTTGCATCATTTTATTATATTCTAATCATATTATGTATCAATCATTTTATTAAAACTTACTTAATTTTGATATTTAATTGTTCAGGTGGCAGGATGGACGGAGGGTTATGGTGAGTTTTTATCATTTGCAACAATAAGGGGAGCAGCTCATGCTGCTCCATTTTCTCAGCCTGCGCGAGCTTTGGTACTATTCAAGGCATTTGTGGAAGGGAAGTCTCTTCCAACTAGTAGTGAATTTGTTGGTAAATTTCATAGAACTGAACTGTAAATTTAAAACATGATCCTATTTTGTGATTCTGTATATGTATGCACATATTTCTTCAAGTTGTTTAGGTTTTTTAGTCTCACAAATTAAATGACTGTTGTGTTCAACTCAAACACCAAATTAAAAATTTTAAAGTAGGCTTTTACCTTTGGGATACAAAAATAGTAGACCATTATTATCTATTGCTAAACCTTTATCTAGCAAGTTGCTATACTTTAATGATACATTATATTAGTGGATTCCTTTTATTGACACGAAGTATTAGTAGATTCCTATCACTGCCATTTGCTCTTTTATCTGGCAAAAAAAGTAATACTGTAGATTCTTCTCAGATTAGGTTTTGCAAAAAATTTCTCAGATTTTATGGGGATAGTCATAATGAGTGATCTCAGAAGGTATTGGATGAGGTAGTTTGATGATTATCAATGGATTTTTTTGGTGGGTGAAGTGTTTATCAATTAAGACTTTGTGCAAAAGGTGCTAAAATCCTTGTCCGTTTGGCTCCGAATTAGGTGAAGATGTCCCTTGCATTTTCACCGGGTGTTCGGTAGTTCGTGTGTGGCTTGAAGCGAGATCCTAG
Protein sequence

>MS.gene68694.t1

MLGPLVKSGVRVLAYSGDQDSEIPFFATRSLIKGLAKDLGLTATDSYRVWYEGSQVAGWTEGYGEFLSFATIRGAAHAAPFSQPARALVLFKAFVEGKSLPTSSEFVGEDVPCIFTGCSVVRVWLEARS