Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69101.t1 | RHN65795.1 | 77.2 | 386 | 88 | 0 | 1 | 386 | 54 | 439 | 1.20E-162 | 582.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69101.t1 | Q9S7T8 | 54.6 | 390 | 173 | 4 | 1 | 386 | 1 | 390 | 2.9e-117 | 423.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69101.t1 | G7IW05 | 77.2 | 386 | 88 | 0 | 1 | 386 | 1 | 386 | 8.5e-163 | 582.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006610 | MS.gene69101 | PPI |
| MS.gene69101 | MS.gene045585 | PPI |
| MS.gene031697 | MS.gene69101 | PPI |
| MS.gene69101 | MS.gene065944 | PPI |
| MS.gene065945 | MS.gene69101 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69101.t1 | MTR_3g018740 | 77.202 | 386 | 88 | 0 | 1 | 386 | 1 | 386 | 0.0 | 598 |
| MS.gene69101.t1 | MTR_3g101010 | 75.897 | 390 | 91 | 2 | 1 | 388 | 1 | 389 | 0.0 | 571 |
| MS.gene69101.t1 | MTR_4g045707 | 69.351 | 385 | 117 | 1 | 4 | 388 | 5 | 388 | 0.0 | 528 |
| MS.gene69101.t1 | MTR_2g045980 | 70.000 | 390 | 109 | 3 | 1 | 386 | 1 | 386 | 0.0 | 526 |
| MS.gene69101.t1 | MTR_2g046030 | 68.974 | 390 | 113 | 3 | 1 | 386 | 1 | 386 | 0.0 | 523 |
| MS.gene69101.t1 | MTR_8g027395 | 67.876 | 386 | 121 | 2 | 3 | 388 | 15 | 397 | 0.0 | 523 |
| MS.gene69101.t1 | MTR_3g101030 | 67.168 | 399 | 108 | 5 | 10 | 388 | 34 | 429 | 0.0 | 518 |
| MS.gene69101.t1 | MTR_8g461160 | 67.519 | 391 | 120 | 3 | 2 | 386 | 3 | 392 | 4.62e-179 | 503 |
| MS.gene69101.t1 | MTR_3g101180 | 65.736 | 394 | 122 | 4 | 5 | 386 | 6 | 398 | 6.45e-179 | 503 |
| MS.gene69101.t1 | MTR_8g027420 | 65.803 | 386 | 118 | 3 | 3 | 388 | 4 | 375 | 1.50e-177 | 499 |
| MS.gene69101.t1 | MTR_3g048000 | 66.580 | 383 | 106 | 5 | 6 | 386 | 28 | 390 | 5.47e-177 | 498 |
| MS.gene69101.t1 | MTR_7g451890 | 62.755 | 392 | 139 | 3 | 3 | 388 | 12 | 402 | 3.02e-174 | 491 |
| MS.gene69101.t1 | MTR_7g050810 | 64.213 | 394 | 130 | 4 | 3 | 388 | 14 | 404 | 6.10e-174 | 491 |
| MS.gene69101.t1 | MTR_7g050750 | 62.500 | 392 | 140 | 3 | 3 | 388 | 6 | 396 | 7.23e-173 | 488 |
| MS.gene69101.t1 | MTR_7g047780 | 63.265 | 392 | 137 | 3 | 3 | 388 | 12 | 402 | 1.47e-171 | 484 |
| MS.gene69101.t1 | MTR_3g101130 | 62.944 | 394 | 135 | 4 | 1 | 388 | 1 | 389 | 4.50e-171 | 483 |
| MS.gene69101.t1 | MTR_4g088525 | 66.484 | 364 | 119 | 2 | 24 | 387 | 8 | 368 | 6.31e-170 | 479 |
| MS.gene69101.t1 | MTR_4g088535 | 65.699 | 379 | 111 | 4 | 5 | 383 | 7 | 366 | 1.14e-165 | 469 |
| MS.gene69101.t1 | MTR_3g015620 | 64.175 | 388 | 108 | 4 | 5 | 386 | 16 | 378 | 8.01e-161 | 456 |
| MS.gene69101.t1 | MTR_3g101050 | 63.990 | 386 | 111 | 6 | 8 | 386 | 32 | 396 | 4.34e-159 | 453 |
| MS.gene69101.t1 | MTR_3g102920 | 59.211 | 380 | 114 | 7 | 12 | 386 | 65 | 408 | 1.42e-140 | 406 |
| MS.gene69101.t1 | MTR_3g101190 | 55.412 | 388 | 97 | 7 | 1 | 388 | 1 | 312 | 7.86e-133 | 383 |
| MS.gene69101.t1 | MTR_3g018747 | 74.517 | 259 | 51 | 2 | 129 | 386 | 9 | 253 | 1.88e-132 | 380 |
| MS.gene69101.t1 | MTR_3g101200 | 54.639 | 388 | 146 | 4 | 3 | 386 | 29 | 390 | 2.86e-129 | 377 |
| MS.gene69101.t1 | MTR_3g111160 | 89.423 | 208 | 22 | 0 | 181 | 388 | 13 | 220 | 4.07e-127 | 365 |
| MS.gene69101.t1 | MTR_3g100995 | 68.504 | 254 | 76 | 2 | 136 | 388 | 14 | 264 | 2.39e-122 | 354 |
| MS.gene69101.t1 | MTR_7g050830 | 57.595 | 316 | 101 | 3 | 3 | 296 | 14 | 318 | 5.55e-119 | 348 |
| MS.gene69101.t1 | MTR_3g100010 | 58.252 | 309 | 81 | 4 | 30 | 305 | 42 | 335 | 3.60e-116 | 342 |
| MS.gene69101.t1 | MTR_3g015760 | 64.368 | 261 | 86 | 3 | 129 | 386 | 23 | 279 | 1.35e-105 | 312 |
| MS.gene69101.t1 | MTR_3g100520 | 63.182 | 220 | 69 | 2 | 170 | 388 | 1 | 209 | 4.00e-90 | 270 |
| MS.gene69101.t1 | MTR_3g111150 | 77.401 | 177 | 16 | 2 | 7 | 183 | 1 | 153 | 2.26e-88 | 265 |
| MS.gene69101.t1 | MTR_2g046410 | 68.293 | 205 | 60 | 2 | 186 | 386 | 144 | 347 | 2.84e-88 | 271 |
| MS.gene69101.t1 | MTR_3g101110 | 57.203 | 236 | 70 | 2 | 132 | 362 | 71 | 280 | 2.56e-82 | 253 |
| MS.gene69101.t1 | MTR_3g099970 | 62.500 | 200 | 57 | 2 | 126 | 325 | 17 | 198 | 1.16e-81 | 248 |
| MS.gene69101.t1 | MTR_3g114310 | 39.043 | 397 | 222 | 11 | 6 | 388 | 20 | 410 | 1.18e-79 | 251 |
| MS.gene69101.t1 | MTR_3g101020 | 58.824 | 187 | 49 | 2 | 203 | 388 | 1 | 160 | 1.75e-65 | 206 |
| MS.gene69101.t1 | MTR_3g102870 | 64.744 | 156 | 54 | 1 | 192 | 347 | 1 | 155 | 3.21e-64 | 203 |
| MS.gene69101.t1 | MTR_3g101150 | 62.658 | 158 | 52 | 3 | 235 | 386 | 1 | 157 | 5.15e-58 | 186 |
| MS.gene69101.t1 | MTR_3g100990 | 58.442 | 154 | 63 | 1 | 1 | 154 | 1 | 153 | 8.68e-51 | 177 |
| MS.gene69101.t1 | MTR_4g093550 | 66.667 | 87 | 29 | 0 | 2 | 88 | 3 | 89 | 4.12e-31 | 114 |
| MS.gene69101.t1 | MTR_6g046890 | 61.905 | 84 | 29 | 1 | 13 | 96 | 7 | 87 | 5.04e-25 | 99.4 |
| MS.gene69101.t1 | MTR_3g101140 | 61.842 | 76 | 25 | 2 | 316 | 388 | 42 | 116 | 2.47e-19 | 83.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69101.t1 | AT1G47710 | 54.615 | 390 | 173 | 4 | 1 | 386 | 1 | 390 | 9.53e-152 | 434 |
| MS.gene69101.t1 | AT1G47710 | 54.615 | 390 | 173 | 4 | 1 | 386 | 28 | 417 | 7.49e-151 | 433 |
| MS.gene69101.t1 | AT3G45220 | 48.731 | 394 | 189 | 5 | 1 | 385 | 1 | 390 | 2.64e-127 | 372 |
| MS.gene69101.t1 | AT2G25240 | 49.100 | 389 | 187 | 6 | 1 | 385 | 1 | 382 | 1.52e-124 | 365 |
| MS.gene69101.t1 | AT2G26390 | 49.377 | 401 | 172 | 8 | 1 | 385 | 1 | 386 | 2.86e-124 | 364 |
| MS.gene69101.t1 | AT1G64030 | 45.431 | 394 | 183 | 7 | 1 | 385 | 1 | 371 | 1.22e-105 | 317 |
| MS.gene69101.t1 | AT2G14540 | 43.878 | 392 | 190 | 6 | 1 | 385 | 29 | 397 | 1.13e-102 | 310 |
| MS.gene69101.t1 | AT2G35580 | 44.361 | 399 | 180 | 11 | 1 | 385 | 1 | 371 | 1.80e-99 | 300 |
| MS.gene69101.t1 | AT1G62170 | 42.025 | 395 | 194 | 6 | 1 | 385 | 62 | 431 | 3.64e-99 | 301 |
| MS.gene69101.t1 | AT1G62170 | 38.785 | 428 | 194 | 7 | 1 | 385 | 62 | 464 | 1.88e-92 | 285 |
| MS.gene69101.t1 | AT1G64010 | 48.387 | 217 | 89 | 2 | 170 | 385 | 1 | 195 | 2.46e-65 | 207 |
| MS.gene69101.t1 | AT1G64010 | 47.525 | 202 | 83 | 2 | 185 | 385 | 2 | 181 | 1.03e-57 | 186 |
| MS.gene69101.t1 | AT1G63280 | 55.085 | 118 | 49 | 2 | 126 | 241 | 5 | 120 | 7.43e-37 | 130 |
| MS.gene69101.t1 | AT1G62160 | 42.000 | 200 | 87 | 4 | 192 | 385 | 42 | 218 | 5.61e-34 | 126 |
| MS.gene69101.t1 | AT1G51330 | 55.914 | 93 | 41 | 0 | 130 | 222 | 32 | 124 | 1.97e-28 | 110 |
| MS.gene69101.t1 | AT1G64020 | 33.929 | 112 | 71 | 3 | 10 | 119 | 10 | 120 | 1.19e-13 | 67.8 |
Find 74 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTAATGCATTGTACTTTAG+AGG | 0.228573 | 3.4:+96150296 | MS.gene69101:CDS |
| TTCACTTCCTTACGCACTTC+TGG | 0.250709 | 3.4:-96150188 | None:intergenic |
| TTATCTTCACCTTTCTTATA+AGG | 0.278181 | 3.4:-96150464 | None:intergenic |
| GTCTGACTATAAGGCCTCTT+TGG | 0.314575 | 3.4:+96149541 | MS.gene69101:CDS |
| GAGGAAGAAGTTCTTTAATA+AGG | 0.316269 | 3.4:-96150238 | None:intergenic |
| GTTGAGATGATCAGTTGATT+TGG | 0.329351 | 3.4:-96149384 | None:intergenic |
| AATTGTGTCGTCTGACTATA+AGG | 0.337989 | 3.4:+96149532 | MS.gene69101:CDS |
| TTCTGAGTGAAACTCTTGTT+TGG | 0.381738 | 3.4:-96149226 | None:intergenic |
| CAACCTTTGTCTTTCTCAAA+AGG | 0.381896 | 3.4:+96150583 | MS.gene69101:CDS |
| CAGGTGCTCAATCCACTTAC+CGG | 0.382564 | 3.4:+96150938 | MS.gene69101:CDS |
| ACCGGAACAATCATCTTTGT+TGG | 0.389749 | 3.4:+96150914 | MS.gene69101:CDS |
| CTTCGTCTTCCTTATAAGAA+AGG | 0.393399 | 3.4:+96150455 | MS.gene69101:CDS |
| TTTCTTCCAAATGCAAAAGA+TGG | 0.393434 | 3.4:+96150509 | MS.gene69101:CDS |
| CTTCTTATTGCTTGTCATGA+AGG | 0.402863 | 3.4:-96150399 | None:intergenic |
| TTCCGTTGATTTCATATTCA+AGG | 0.404811 | 3.4:+96149565 | MS.gene69101:CDS |
| TGACTGAGCTGCCATTTAGA+AGG | 0.423575 | 3.4:-96150370 | None:intergenic |
| TGAAGGAAGGTTGAAGAGAA+AGG | 0.426729 | 3.4:-96149505 | None:intergenic |
| TCTCCTTCGTCGATGGTGTA+TGG | 0.430979 | 3.4:+96149471 | MS.gene69101:CDS |
| GTGTAGGAACTCAGATTTAG+AGG | 0.438792 | 3.4:-96150558 | None:intergenic |
| GATGATCAGTTGATTTGGAT+TGG | 0.440085 | 3.4:-96149379 | None:intergenic |
| AACAATCATCTTTGTTGGAC+AGG | 0.440935 | 3.4:+96150919 | MS.gene69101:CDS |
| TGCGTAAGGAAGTGAACATA+TGG | 0.443212 | 3.4:+96150195 | MS.gene69101:CDS |
| TCCAACAAAGATGATTGTTC+CGG | 0.452329 | 3.4:-96150915 | None:intergenic |
| TTCATTGAAGTAAATGAAGA+AGG | 0.457204 | 3.4:+96150779 | MS.gene69101:CDS |
| CTCTCCGACGCTGCTCCTGC+CGG | 0.459274 | 3.4:+96149437 | MS.gene69101:CDS |
| TTAAAACCTCCAGCTGAGAA+AGG | 0.461717 | 3.4:-96150692 | None:intergenic |
| GTGCTCAGCATGATCGCTGC+TGG | 0.475334 | 3.4:+96149317 | MS.gene69101:CDS |
| GAAGGAAGGTTGAAGAGAAA+GGG | 0.477583 | 3.4:-96149504 | None:intergenic |
| GAGTGAAACTCTTGTTTGGT+TGG | 0.477610 | 3.4:-96149222 | None:intergenic |
| CACCAAGATCACCCGGTAAG+TGG | 0.479483 | 3.4:-96150950 | None:intergenic |
| ATTAAAGAACTTCTTCCTCC+AGG | 0.485712 | 3.4:+96150242 | MS.gene69101:CDS |
| TTTGGTTGGTGATTGACTCA+TGG | 0.489862 | 3.4:-96149208 | None:intergenic |
| TTCTTATTGCTTGTCATGAA+GGG | 0.490256 | 3.4:-96150398 | None:intergenic |
| ATGATCGCTGCTGGCTCTGA+TGG | 0.495156 | 3.4:+96149326 | MS.gene69101:CDS |
| GTTAAGCTATCAACTGATCC+TGG | 0.502275 | 3.4:-96150260 | None:intergenic |
| TTTGAGAAAGACAAAGGTTG+TGG | 0.502972 | 3.4:-96150580 | None:intergenic |
| GAGAGTCGAGGTCCACCGGC+AGG | 0.505461 | 3.4:-96149452 | None:intergenic |
| AGACGACACAATTTGCTTGA+AGG | 0.506896 | 3.4:-96149522 | None:intergenic |
| ATGGTGGACTCTTCTCTTGT+GGG | 0.507953 | 3.4:+96150719 | MS.gene69101:CDS |
| GAAATATGTAAGTTACAGAA+AGG | 0.511718 | 3.4:-96150748 | None:intergenic |
| CACTGCTGCAATATTATCCA+AGG | 0.518182 | 3.4:+96150820 | MS.gene69101:CDS |
| CCTCGACTCTCCTTCGTCGA+TGG | 0.525076 | 3.4:+96149464 | MS.gene69101:CDS |
| AGATGGAAAGCTAAAGCCCT+TGG | 0.532842 | 3.4:-96150837 | None:intergenic |
| GAAGGAGAGTCGAGGTCCAC+CGG | 0.533066 | 3.4:-96149456 | None:intergenic |
| TGAAACTTCTCGTATGCTAA+AGG | 0.534292 | 3.4:+96150652 | MS.gene69101:CDS |
| AGCACAACTTGCAGCGACAA+TGG | 0.534900 | 3.4:-96149299 | None:intergenic |
| AAAGACAAAGGTTGTGGTGT+AGG | 0.535033 | 3.4:-96150574 | None:intergenic |
| GCTACAAAGTCTAGTTGAGA+TGG | 0.536062 | 3.4:-96150854 | None:intergenic |
| TTGATTAGAGAAGATTTGAC+CGG | 0.538023 | 3.4:+96150896 | MS.gene69101:CDS |
| CATTGTACTTTAGAGGAGCA+TGG | 0.546324 | 3.4:+96150303 | MS.gene69101:CDS |
| AATGGTGGACTCTTCTCTTG+TGG | 0.557757 | 3.4:+96150718 | MS.gene69101:CDS |
| GACACAATTTGCTTGAAGGA+AGG | 0.561491 | 3.4:-96149518 | None:intergenic |
| TCTCGTATGCTAAAGGAGCT+AGG | 0.570961 | 3.4:+96150659 | MS.gene69101:CDS |
| GATCAGTTGATTTGGATTGG+AGG | 0.573373 | 3.4:-96149376 | None:intergenic |
| TCCGACGCTGCTCCTGCCGG+TGG | 0.579915 | 3.4:+96149440 | MS.gene69101:CDS |
| TTAGGCTCCAGAAGTGCGTA+AGG | 0.581412 | 3.4:+96150181 | MS.gene69101:intron |
| TACCTTGAATATGAAATCAA+CGG | 0.585355 | 3.4:-96149567 | None:intergenic |
| TCTAAATGGCAGCTCAGTCA+AGG | 0.587482 | 3.4:+96150373 | MS.gene69101:CDS |
| CTTGGATAATATTGCAGCAG+TGG | 0.588147 | 3.4:-96150819 | None:intergenic |
| TCCACCGGCAGGAGCAGCGT+CGG | 0.589894 | 3.4:-96149441 | None:intergenic |
| GAAATCAACGGAAGCCAAAG+AGG | 0.593112 | 3.4:-96149555 | None:intergenic |
| TCGAGAAGTTGCTGTCGTGT+AGG | 0.602586 | 3.4:-96149350 | None:intergenic |
| GCGTAAGGAAGTGAACATAT+GGG | 0.604799 | 3.4:+96150196 | MS.gene69101:CDS |
| AGGTGCTCAATCCACTTACC+GGG | 0.607771 | 3.4:+96150939 | MS.gene69101:CDS |
| AGAAGGCGTTGAAGCTGCTG+CGG | 0.611204 | 3.4:+96150796 | MS.gene69101:CDS |
| CAGAAACAAGCTGTGAGGCG+AGG | 0.626579 | 3.4:-96149409 | None:intergenic |
| ACAATGCATTAGCAAAGATG+AGG | 0.643645 | 3.4:-96150286 | None:intergenic |
| CACAGCAGAAACAAGCTGTG+AGG | 0.652997 | 3.4:-96149414 | None:intergenic |
| TAGCGATCACCAAGATCACC+CGG | 0.654012 | 3.4:-96150957 | None:intergenic |
| ACTGCTGCAATATTATCCAA+GGG | 0.662517 | 3.4:+96150821 | MS.gene69101:CDS |
| TATCCATACACCATCGACGA+AGG | 0.669317 | 3.4:-96149474 | None:intergenic |
| TATGCTAAAGGAGCTAGGAG+TGG | 0.687565 | 3.4:+96150664 | MS.gene69101:CDS |
| AAGCTATCAACTGATCCTGG+AGG | 0.720518 | 3.4:-96150257 | None:intergenic |
| CCATCGACGAAGGAGAGTCG+AGG | 0.723381 | 3.4:-96149464 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTCATGTTAATTAACTAA+AGG | + | chr3.4:96149694-96149713 | MS.gene69101:intron | 15.0% |
| !!! | ATAATTACTGTTTTATTAGA+AGG | - | chr3.4:96149915-96149934 | None:intergenic | 15.0% |
| !!! | ATTGATTTTTGAATTTGATA+TGG | + | chr3.4:96150154-96150173 | MS.gene69101:intron | 15.0% |
| !!! | TCAAAAGAAATTTTGAATTT+CGG | - | chr3.4:96150629-96150648 | None:intergenic | 15.0% |
| !! | ATAACACGAAATAAAAATAG+CGG | - | chr3.4:96149632-96149651 | None:intergenic | 20.0% |
| !! | ATGAAATATATATGCAAAGT+CGG | - | chr3.4:96149681-96149700 | None:intergenic | 20.0% |
| !! | CTCTAATCAAAAATAAGAAA+GGG | - | chr3.4:96150886-96150905 | None:intergenic | 20.0% |
| !! | GAAAAAAATACATAGAGAAT+CGG | - | chr3.4:96150493-96150512 | None:intergenic | 20.0% |
| !! | TAAAAACTAATTGTTTGTGA+TGG | - | chr3.4:96149725-96149744 | None:intergenic | 20.0% |
| !! | TCTCTAATCAAAAATAAGAA+AGG | - | chr3.4:96150887-96150906 | None:intergenic | 20.0% |
| !!! | TGAATTTGATATGGTTTTTT+AGG | + | chr3.4:96150163-96150182 | MS.gene69101:intron | 20.0% |
| !!! | TTATTTCGTGTTATTATTTG+TGG | + | chr3.4:96149638-96149657 | MS.gene69101:intron | 20.0% |
| !!! | TTTAACTCTAAAATTTGAAG+AGG | - | chr3.4:96150004-96150023 | None:intergenic | 20.0% |
| !!! | TTTTATTTCATTAGCCAATT+TGG | + | chr3.4:96149751-96149770 | MS.gene69101:intron | 20.0% |
| ! | GAAATATGTAAGTTACAGAA+AGG | - | chr3.4:96150751-96150770 | None:intergenic | 25.0% |
| ! | TAATCAAAAATAAGAAAGGG+TGG | - | chr3.4:96150883-96150902 | None:intergenic | 25.0% |
| ! | TACCTTGAATATGAAATCAA+CGG | - | chr3.4:96149570-96149589 | None:intergenic | 25.0% |
| ! | TGAAATATATATGCAAAGTC+GGG | - | chr3.4:96149680-96149699 | None:intergenic | 25.0% |
| ! | TGTTATTATTTGTGGTGTTT+CGG | + | chr3.4:96149646-96149665 | MS.gene69101:intron | 25.0% |
| ! | TTATCTTCACCTTTCTTATA+AGG | - | chr3.4:96150467-96150486 | None:intergenic | 25.0% |
| ! | TTATGCAAATAGATCATATG+AGG | - | chr3.4:96150135-96150154 | None:intergenic | 25.0% |
| ! | TTCATTGAAGTAAATGAAGA+AGG | + | chr3.4:96150779-96150798 | MS.gene69101:CDS | 25.0% |
| !! | AGATCTATCTTTAGAAACAT+TGG | - | chr3.4:96149880-96149899 | None:intergenic | 25.0% |
| !! | ATTGATTTCAGCACAAAATA+GGG | + | chr3.4:96149937-96149956 | MS.gene69101:intron | 25.0% |
| !! | TATGATTTTCACCTTCTAAA+TGG | + | chr3.4:96150359-96150378 | MS.gene69101:CDS | 25.0% |
| !!! | AAATCATTTTTGCTCCAAAT+TGG | - | chr3.4:96149768-96149787 | None:intergenic | 25.0% |
| !!! | TATTGATTTCAGCACAAAAT+AGG | + | chr3.4:96149936-96149955 | MS.gene69101:intron | 25.0% |
| !!! | TTGTTTTGAGAACAAATGTT+TGG | - | chr3.4:96149255-96149274 | None:intergenic | 25.0% |
| CTTGAAACATATTTCTTGAG+TGG | + | chr3.4:96149842-96149861 | MS.gene69101:intron | 30.0% | |
| GAAATATATATGCAAAGTCG+GGG | - | chr3.4:96149679-96149698 | None:intergenic | 30.0% | |
| GAGGAAGAAGTTCTTTAATA+AGG | - | chr3.4:96150241-96150260 | None:intergenic | 30.0% | |
| GTTATTATTTGTGGTGTTTC+GGG | + | chr3.4:96149647-96149666 | MS.gene69101:intron | 30.0% | |
| TTCTTATTGCTTGTCATGAA+GGG | - | chr3.4:96150401-96150420 | None:intergenic | 30.0% | |
| TTGATTAGAGAAGATTTGAC+CGG | + | chr3.4:96150896-96150915 | MS.gene69101:CDS | 30.0% | |
| TTTCTTCCAAATGCAAAAGA+TGG | + | chr3.4:96150509-96150528 | MS.gene69101:CDS | 30.0% | |
| TTTCTTGATCCTTTAGCATA+TGG | + | chr3.4:96150036-96150055 | MS.gene69101:intron | 30.0% | |
| !! | AAAAATAGCGGATAGATTGT+AGG | - | chr3.4:96149620-96149639 | None:intergenic | 30.0% |
| !! | AAAATAGCGGATAGATTGTA+GGG | - | chr3.4:96149619-96149638 | None:intergenic | 30.0% |
| !! | TTCCGTTGATTTCATATTCA+AGG | + | chr3.4:96149565-96149584 | MS.gene69101:CDS | 30.0% |
| !!! | AGCTGGAGGTTTTAAAAAAA+TGG | + | chr3.4:96150700-96150719 | MS.gene69101:CDS | 30.0% |
| !!! | TGGAGGTTTTAAAAAAATGG+TGG | + | chr3.4:96150703-96150722 | MS.gene69101:CDS | 30.0% |
| AACAATCATCTTTGTTGGAC+AGG | + | chr3.4:96150919-96150938 | MS.gene69101:CDS | 35.0% | |
| AATTGTGTCGTCTGACTATA+AGG | + | chr3.4:96149532-96149551 | MS.gene69101:CDS | 35.0% | |
| ACAATGCATTAGCAAAGATG+AGG | - | chr3.4:96150289-96150308 | None:intergenic | 35.0% | |
| ACTGCTGCAATATTATCCAA+GGG | + | chr3.4:96150821-96150840 | MS.gene69101:CDS | 35.0% | |
| AGCATACATAACCTTTGTGT+TGG | + | chr3.4:96149796-96149815 | MS.gene69101:intron | 35.0% | |
| ATTAAAGAACTTCTTCCTCC+AGG | + | chr3.4:96150242-96150261 | MS.gene69101:CDS | 35.0% | |
| ATTAGTGAAGACCAACACAA+AGG | - | chr3.4:96149810-96149829 | None:intergenic | 35.0% | |
| CAACCTTTGTCTTTCTCAAA+AGG | + | chr3.4:96150583-96150602 | MS.gene69101:CDS | 35.0% | |
| CTTCGTCTTCCTTATAAGAA+AGG | + | chr3.4:96150455-96150474 | MS.gene69101:CDS | 35.0% | |
| CTTCTTATTGCTTGTCATGA+AGG | - | chr3.4:96150402-96150421 | None:intergenic | 35.0% | |
| GCTAATGCATTGTACTTTAG+AGG | + | chr3.4:96150296-96150315 | MS.gene69101:CDS | 35.0% | |
| GTTGAGATGATCAGTTGATT+TGG | - | chr3.4:96149387-96149406 | None:intergenic | 35.0% | |
| TCCAACAAAGATGATTGTTC+CGG | - | chr3.4:96150918-96150937 | None:intergenic | 35.0% | |
| TGAAACTTCTCGTATGCTAA+AGG | + | chr3.4:96150652-96150671 | MS.gene69101:CDS | 35.0% | |
| TTCTGAGTGAAACTCTTGTT+TGG | - | chr3.4:96149229-96149248 | None:intergenic | 35.0% | |
| TTTGAGAAAGACAAAGGTTG+TGG | - | chr3.4:96150583-96150602 | None:intergenic | 35.0% | |
| ! | GACAATCCATCTTTTGCATT+TGG | - | chr3.4:96150518-96150537 | None:intergenic | 35.0% |
| ! | GTCAGCTTTAGTTGAAAAAG+TGG | + | chr3.4:96150535-96150554 | MS.gene69101:CDS | 35.0% |
| ! | TGGGTTGAAAAAGAGACAAA+TGG | + | chr3.4:96150215-96150234 | MS.gene69101:CDS | 35.0% |
| !! | CTTCCTTTTGAGAAAGACAA+AGG | - | chr3.4:96150589-96150608 | None:intergenic | 35.0% |
| !! | GATGATCAGTTGATTTGGAT+TGG | - | chr3.4:96149382-96149401 | None:intergenic | 35.0% |
| AAAGACAAAGGTTGTGGTGT+AGG | - | chr3.4:96150577-96150596 | None:intergenic | 40.0% | |
| ACCGGAACAATCATCTTTGT+TGG | + | chr3.4:96150914-96150933 | MS.gene69101:CDS | 40.0% | |
| CACTGCTGCAATATTATCCA+AGG | + | chr3.4:96150820-96150839 | MS.gene69101:CDS | 40.0% | |
| CTTGGATAATATTGCAGCAG+TGG | - | chr3.4:96150822-96150841 | None:intergenic | 40.0% | |
| GAAGGAAGGTTGAAGAGAAA+GGG | - | chr3.4:96149507-96149526 | None:intergenic | 40.0% | |
| GCGTAAGGAAGTGAACATAT+GGG | + | chr3.4:96150196-96150215 | MS.gene69101:CDS | 40.0% | |
| GCTACAAAGTCTAGTTGAGA+TGG | - | chr3.4:96150857-96150876 | None:intergenic | 40.0% | |
| GTGTAGGAACTCAGATTTAG+AGG | - | chr3.4:96150561-96150580 | None:intergenic | 40.0% | |
| GTTAAGCTATCAACTGATCC+TGG | - | chr3.4:96150263-96150282 | None:intergenic | 40.0% | |
| TGAAGGAAGGTTGAAGAGAA+AGG | - | chr3.4:96149508-96149527 | None:intergenic | 40.0% | |
| TGCGTAAGGAAGTGAACATA+TGG | + | chr3.4:96150195-96150214 | MS.gene69101:CDS | 40.0% | |
| TTAAAACCTCCAGCTGAGAA+AGG | - | chr3.4:96150695-96150714 | None:intergenic | 40.0% | |
| ! | AGACGACACAATTTGCTTGA+AGG | - | chr3.4:96149525-96149544 | None:intergenic | 40.0% |
| ! | CATTGTACTTTAGAGGAGCA+TGG | + | chr3.4:96150303-96150322 | MS.gene69101:CDS | 40.0% |
| ! | GACACAATTTGCTTGAAGGA+AGG | - | chr3.4:96149521-96149540 | None:intergenic | 40.0% |
| ! | GAGTGAAACTCTTGTTTGGT+TGG | - | chr3.4:96149225-96149244 | None:intergenic | 40.0% |
| !! | GATCAGTTGATTTGGATTGG+AGG | - | chr3.4:96149379-96149398 | None:intergenic | 40.0% |
| !! | TTTGGTTGGTGATTGACTCA+TGG | - | chr3.4:96149211-96149230 | None:intergenic | 40.0% |
| AAGCTATCAACTGATCCTGG+AGG | - | chr3.4:96150260-96150279 | None:intergenic | 45.0% | |
| AGATGGAAAGCTAAAGCCCT+TGG | - | chr3.4:96150840-96150859 | None:intergenic | 45.0% | |
| GAAATCAACGGAAGCCAAAG+AGG | - | chr3.4:96149558-96149577 | None:intergenic | 45.0% | |
| GTCGATCAGCCATATGCTAA+AGG | - | chr3.4:96150048-96150067 | None:intergenic | 45.0% | |
| GTCTGACTATAAGGCCTCTT+TGG | + | chr3.4:96149541-96149560 | MS.gene69101:CDS | 45.0% | |
| TATCCATACACCATCGACGA+AGG | - | chr3.4:96149477-96149496 | None:intergenic | 45.0% | |
| TATGCTAAAGGAGCTAGGAG+TGG | + | chr3.4:96150664-96150683 | MS.gene69101:CDS | 45.0% | |
| TCTAAATGGCAGCTCAGTCA+AGG | + | chr3.4:96150373-96150392 | MS.gene69101:CDS | 45.0% | |
| TCTCGTATGCTAAAGGAGCT+AGG | + | chr3.4:96150659-96150678 | MS.gene69101:CDS | 45.0% | |
| TTCACTTCCTTACGCACTTC+TGG | - | chr3.4:96150191-96150210 | None:intergenic | 45.0% | |
| ! | GTTTTACCTTTCTCAGCTGG+AGG | + | chr3.4:96150686-96150705 | MS.gene69101:CDS | 45.0% |
| ! | TGACTGAGCTGCCATTTAGA+AGG | - | chr3.4:96150373-96150392 | None:intergenic | 45.0% |
| !! | AATGGTGGACTCTTCTCTTG+TGG | + | chr3.4:96150718-96150737 | MS.gene69101:CDS | 45.0% |
| !! | ATGGTGGACTCTTCTCTTGT+GGG | + | chr3.4:96150719-96150738 | MS.gene69101:CDS | 45.0% |
| !! | GTGGTTTTACCTTTCTCAGC+TGG | + | chr3.4:96150683-96150702 | MS.gene69101:CDS | 45.0% |
| AGCACAACTTGCAGCGACAA+TGG | - | chr3.4:96149302-96149321 | None:intergenic | 50.0% | |
| AGGTGCTCAATCCACTTACC+GGG | + | chr3.4:96150939-96150958 | MS.gene69101:CDS | 50.0% | |
| CACAGCAGAAACAAGCTGTG+AGG | - | chr3.4:96149417-96149436 | None:intergenic | 50.0% | |
| CAGGTGCTCAATCCACTTAC+CGG | + | chr3.4:96150938-96150957 | MS.gene69101:CDS | 50.0% | |
| TCGAGAAGTTGCTGTCGTGT+AGG | - | chr3.4:96149353-96149372 | None:intergenic | 50.0% | |
| TCTCCTTCGTCGATGGTGTA+TGG | + | chr3.4:96149471-96149490 | MS.gene69101:CDS | 50.0% | |
| ! | TTAGGCTCCAGAAGTGCGTA+AGG | + | chr3.4:96150181-96150200 | MS.gene69101:intron | 50.0% |
| CAGAAACAAGCTGTGAGGCG+AGG | - | chr3.4:96149412-96149431 | None:intergenic | 55.0% | |
| !! | AGAAGGCGTTGAAGCTGCTG+CGG | + | chr3.4:96150796-96150815 | MS.gene69101:CDS | 55.0% |
| !! | ATGATCGCTGCTGGCTCTGA+TGG | + | chr3.4:96149326-96149345 | MS.gene69101:CDS | 55.0% |
| CCATCGACGAAGGAGAGTCG+AGG | - | chr3.4:96149467-96149486 | None:intergenic | 60.0% | |
| CCTCGACTCTCCTTCGTCGA+TGG | + | chr3.4:96149464-96149483 | MS.gene69101:CDS | 60.0% | |
| GAAGGAGAGTCGAGGTCCAC+CGG | - | chr3.4:96149459-96149478 | None:intergenic | 60.0% | |
| GTGCTCAGCATGATCGCTGC+TGG | + | chr3.4:96149317-96149336 | MS.gene69101:CDS | 60.0% | |
| CTCTCCGACGCTGCTCCTGC+CGG | + | chr3.4:96149437-96149456 | MS.gene69101:CDS | 70.0% | |
| GAGAGTCGAGGTCCACCGGC+AGG | - | chr3.4:96149455-96149474 | None:intergenic | 70.0% | |
| TCCACCGGCAGGAGCAGCGT+CGG | - | chr3.4:96149444-96149463 | None:intergenic | 70.0% | |
| TCCGACGCTGCTCCTGCCGG+TGG | + | chr3.4:96149440-96149459 | MS.gene69101:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 96149200 | 96150964 | 96149200 | ID=MS.gene69101 |
| chr3.4 | mRNA | 96149200 | 96150964 | 96149200 | ID=MS.gene69101.t1;Parent=MS.gene69101 |
| chr3.4 | exon | 96149200 | 96149586 | 96149200 | ID=MS.gene69101.t1.exon1;Parent=MS.gene69101.t1 |
| chr3.4 | CDS | 96149200 | 96149586 | 96149200 | ID=cds.MS.gene69101.t1;Parent=MS.gene69101.t1 |
| chr3.4 | exon | 96150185 | 96150964 | 96150185 | ID=MS.gene69101.t1.exon2;Parent=MS.gene69101.t1 |
| chr3.4 | CDS | 96150185 | 96150964 | 96150185 | ID=cds.MS.gene69101.t1;Parent=MS.gene69101.t1 |
| Gene Sequence |
| Protein sequence |
