Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69127.t1 | XP_013462103.1 | 93.1 | 231 | 15 | 1 | 1 | 230 | 1 | 231 | 6.70E-97 | 363.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69127.t1 | A0A072V439 | 93.1 | 231 | 15 | 1 | 1 | 230 | 1 | 231 | 4.8e-97 | 363.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051871 | MS.gene69127 | 0.807297 | 5.42E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69127.t1 | MTR_3g111670 | 98.701 | 231 | 2 | 1 | 1 | 230 | 1 | 231 | 2.71e-169 | 465 |
| MS.gene69127.t1 | MTR_1g021970 | 83.550 | 231 | 32 | 4 | 1 | 230 | 1 | 226 | 1.68e-136 | 382 |
| MS.gene69127.t1 | MTR_1g021970 | 83.117 | 231 | 32 | 5 | 1 | 230 | 1 | 225 | 3.78e-134 | 376 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69127.t1 | AT1G19330 | 76.522 | 230 | 51 | 3 | 1 | 230 | 1 | 227 | 6.01e-111 | 318 |
| MS.gene69127.t1 | AT1G19330 | 75.319 | 235 | 50 | 4 | 1 | 230 | 1 | 232 | 3.12e-109 | 314 |
| MS.gene69127.t1 | AT1G19330 | 75.000 | 236 | 50 | 5 | 1 | 230 | 1 | 233 | 5.43e-108 | 311 |
| MS.gene69127.t1 | AT1G75060 | 69.787 | 235 | 64 | 5 | 1 | 230 | 1 | 233 | 2.40e-106 | 306 |
| MS.gene69127.t1 | AT1G75060 | 69.362 | 235 | 64 | 6 | 1 | 230 | 1 | 232 | 7.83e-104 | 300 |
| MS.gene69127.t1 | AT1G75060 | 70.370 | 189 | 50 | 4 | 1 | 184 | 1 | 188 | 9.89e-81 | 240 |
Find 61 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATACTAAGGTTGTTGTTAC+TGG | 0.194013 | 3.4:-96542953 | MS.gene69127:CDS |
| AGCTGCTCCTTTGATGGGTT+TGG | 0.231841 | 3.4:+96540951 | None:intergenic |
| CTCTGGTGATTCACAGTCTA+AGG | 0.252293 | 3.4:-96541308 | MS.gene69127:CDS |
| GGACGAGTTGCAGGTCATTA+AGG | 0.256826 | 3.4:-96540597 | MS.gene69127:CDS |
| TCTGTTCTTGTTGGTCTTCA+AGG | 0.325218 | 3.4:-96542914 | MS.gene69127:CDS |
| GTTAAGAAAGCTGTTGGATT+AGG | 0.325633 | 3.4:-96542887 | MS.gene69127:CDS |
| GCAATGGAATGGATCAGATA+TGG | 0.328027 | 3.4:-96541884 | MS.gene69127:CDS |
| ATAATGCAGGTTCTTACTAA+TGG | 0.333844 | 3.4:-96541997 | MS.gene69127:intron |
| GCTGCTCCTTTGATGGGTTT+GGG | 0.336272 | 3.4:+96540952 | None:intergenic |
| TCAACTAGCTGCTCCTTTGA+TGG | 0.362105 | 3.4:+96540945 | None:intergenic |
| TGGCTGCATTGTGGAGATAT+TGG | 0.369691 | 3.4:-96541116 | MS.gene69127:CDS |
| GAAGCAAATGGACGAGTTGC+AGG | 0.380501 | 3.4:-96540606 | MS.gene69127:intron |
| GACGAGTTGCAGGTCATTAA+GGG | 0.386548 | 3.4:-96540596 | MS.gene69127:CDS |
| GCGACTCATTTGCAAAGCTT+TGG | 0.398902 | 3.4:-96543022 | MS.gene69127:CDS |
| CGTACAAAATCTGTTCTTGT+TGG | 0.403520 | 3.4:-96542923 | MS.gene69127:CDS |
| ATTGCACGTTATCAAATTCA+AGG | 0.405029 | 3.4:+96541902 | None:intergenic |
| TTGGATTAGGTGGTTGGCAT+TGG | 0.430118 | 3.4:-96542874 | MS.gene69127:CDS |
| CACAGAATGCATAGATCATT+GGG | 0.437599 | 3.4:-96541361 | MS.gene69127:CDS |
| ATTAGGTGGTTGGCATTGGC+TGG | 0.438971 | 3.4:-96542870 | MS.gene69127:intron |
| GCACAGAATGCATAGATCAT+TGG | 0.439918 | 3.4:-96541362 | MS.gene69127:CDS |
| GGCGTTGTTAAGAAAGCTGT+TGG | 0.447387 | 3.4:-96542893 | MS.gene69127:CDS |
| TGACTTGAGCAAGCTTGAAA+TGG | 0.450063 | 3.4:-96541136 | MS.gene69127:CDS |
| TTGCAAAGCTTTGGTGGTGG+TGG | 0.460216 | 3.4:-96543013 | MS.gene69127:CDS |
| ACTCATTTGCAAAGCTTTGG+TGG | 0.481146 | 3.4:-96543019 | MS.gene69127:CDS |
| CAACTAGCTGCTCCTTTGAT+GGG | 0.486144 | 3.4:+96540946 | None:intergenic |
| TCTGGTGATTCACAGTCTAA+GGG | 0.496708 | 3.4:-96541307 | MS.gene69127:CDS |
| AGTTCAGTTAACGGTGGTGG+TGG | 0.498339 | 3.4:-96543049 | MS.gene69127:CDS |
| ATCATCTTCTTCATTGCCAG+TGG | 0.499955 | 3.4:+96541927 | None:intergenic |
| GGGTCCGTTACTATGCCTCA+TGG | 0.500458 | 3.4:-96541286 | MS.gene69127:CDS |
| AAGCTGTTGGATTAGGTGGT+TGG | 0.508473 | 3.4:-96542880 | MS.gene69127:CDS |
| GCAATGGAAAGTTCAGTTAA+CGG | 0.508721 | 3.4:-96543058 | MS.gene69127:CDS |
| ACCATGAGTAGGTCCTTCTC+TGG | 0.512079 | 3.4:-96541325 | MS.gene69127:CDS |
| TGTGTTACCTCGTCATACTA+AGG | 0.520326 | 3.4:-96542966 | MS.gene69127:CDS |
| TACTATGCCTCATGGGTCCA+TGG | 0.522112 | 3.4:-96541278 | MS.gene69127:intron |
| TTGAATTTGATAACGTGCAA+TGG | 0.522138 | 3.4:-96541900 | MS.gene69127:CDS |
| CATTTGCAAAGCTTTGGTGG+TGG | 0.527791 | 3.4:-96543016 | MS.gene69127:CDS |
| AGACGAAATGATTGAAGCAA+TGG | 0.538460 | 3.4:-96543074 | None:intergenic |
| GAGGCATTTCATGTCCCAGC+TGG | 0.539302 | 3.4:-96540913 | MS.gene69127:intron |
| CAATGGAATGGATCAGATAT+GGG | 0.541429 | 3.4:-96541883 | MS.gene69127:intron |
| AAGAAAGCTGTTGGATTAGG+TGG | 0.556533 | 3.4:-96542884 | MS.gene69127:CDS |
| ATTTGTCAATGCTGCAAAGA+GGG | 0.558483 | 3.4:-96540573 | MS.gene69127:CDS |
| TTTGATAACGTGCAATGGAA+TGG | 0.564949 | 3.4:-96541895 | MS.gene69127:CDS |
| TCATCTTCTTCATTGCCAGT+GGG | 0.573087 | 3.4:+96541928 | None:intergenic |
| AGCGTGATTGAAGCACCCAC+TGG | 0.574928 | 3.4:-96541943 | MS.gene69127:CDS |
| GAAAGTTCAGTTAACGGTGG+TGG | 0.587165 | 3.4:-96543052 | MS.gene69127:CDS |
| TGTCGTCCCAAACCCATCAA+AGG | 0.596940 | 3.4:-96540958 | MS.gene69127:CDS |
| GGTCCGTTACTATGCCTCAT+GGG | 0.599829 | 3.4:-96541285 | MS.gene69127:CDS |
| AGACTGTGAATCACCAGAGA+AGG | 0.609518 | 3.4:+96541312 | None:intergenic |
| ACCAGAGAAGGACCTACTCA+TGG | 0.614361 | 3.4:+96541324 | None:intergenic |
| GAATTGAAGTGAAGCTACAA+AGG | 0.619531 | 3.4:-96541975 | MS.gene69127:CDS |
| CTGGTGATTCACAGTCTAAG+GGG | 0.620120 | 3.4:-96541306 | MS.gene69127:CDS |
| AGCTAGTTGATGTTGTTCAG+AGG | 0.634780 | 3.4:-96540932 | MS.gene69127:CDS |
| AGCTTGAAATGGCTGCATTG+TGG | 0.645923 | 3.4:-96541125 | MS.gene69127:CDS |
| TGGTGGTGATAGTAGTGAAG+AGG | 0.648847 | 3.4:-96542996 | MS.gene69127:CDS |
| CACACAAGTCTCACAAATCG+AGG | 0.652726 | 3.4:-96541384 | MS.gene69127:CDS |
| GATTTGTCAATGCTGCAAAG+AGG | 0.660589 | 3.4:-96540574 | MS.gene69127:CDS |
| GGACCCATGAGGCATAGTAA+CGG | 0.688810 | 3.4:+96541282 | None:intergenic |
| CATGTCACAAGACCATGAGT+AGG | 0.700516 | 3.4:-96541336 | MS.gene69127:CDS |
| TGATATACCATGGACCCATG+AGG | 0.707981 | 3.4:+96541271 | None:intergenic |
| ACAACAACCTTAGTATGACG+AGG | 0.714849 | 3.4:+96542959 | None:intergenic |
| ATGGAAAGTTCAGTTAACGG+TGG | 0.729999 | 3.4:-96543055 | MS.gene69127:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTATTAAAAATAGTAC+CGG | + | chr3.4:96542171-96542190 | None:intergenic | 10.0% |
| !! | ATTGTTAAAAAAAATCATTT+AGG | + | chr3.4:96541590-96541609 | None:intergenic | 10.0% |
| !! | TAACACAATTTATTTAATAT+TGG | + | chr3.4:96541337-96541356 | None:intergenic | 10.0% |
| !! | TATTAAATAAATTGTGTTAT+TGG | - | chr3.4:96541338-96541357 | MS.gene69127:CDS | 10.0% |
| !!! | AATTTAGATTATTTGAAATT+AGG | - | chr3.4:96541564-96541583 | MS.gene69127:intron | 10.0% |
| !!! | ATTGTTTATTAAGTTTATTT+TGG | - | chr3.4:96541252-96541271 | MS.gene69127:intron | 10.0% |
| !!! | GTTTCTATTTTTTATTATTA+AGG | - | chr3.4:96540796-96540815 | MS.gene69127:intron | 10.0% |
| !!! | TTGTTTATTAAGTTTATTTT+GGG | - | chr3.4:96541253-96541272 | MS.gene69127:intron | 10.0% |
| !! | TATCAGATAATTTACAAATT+CGG | + | chr3.4:96542881-96542900 | None:intergenic | 15.0% |
| !! | TTATTAATAATAATTCTGAC+TGG | - | chr3.4:96541791-96541810 | MS.gene69127:intron | 15.0% |
| !!! | ATATGCATTTTTATTTTTCA+TGG | - | chr3.4:96541411-96541430 | MS.gene69127:intron | 15.0% |
| !!! | TAGTTTATTAATTGTTGTTT+TGG | - | chr3.4:96542005-96542024 | MS.gene69127:intron | 15.0% |
| !!! | TGTTTATTAAGTTTATTTTG+GGG | - | chr3.4:96541254-96541273 | MS.gene69127:intron | 15.0% |
| !! | AAATCAAAACTTGAATGATT+TGG | + | chr3.4:96541043-96541062 | None:intergenic | 20.0% |
| !! | ATATTGGAAAATAATACCAA+AGG | + | chr3.4:96541321-96541340 | None:intergenic | 20.0% |
| !! | GTTAATCATTATTATTGAGA+TGG | + | chr3.4:96541870-96541889 | None:intergenic | 20.0% |
| !! | TGAAATTGAAATGATAAGAA+TGG | + | chr3.4:96540844-96540863 | None:intergenic | 20.0% |
| !! | TGGTATATAGAGTAAAAAAA+AGG | + | chr3.4:96542101-96542120 | None:intergenic | 20.0% |
| !!! | AAGATAGAAACTTGATAATA+TGG | + | chr3.4:96542844-96542863 | None:intergenic | 20.0% |
| !!! | AATTTTGATTCTCAAAATGT+TGG | - | chr3.4:96541070-96541089 | MS.gene69127:intron | 20.0% |
| !!! | ACCAAAAGATTAGTTATTAT+AGG | + | chr3.4:96542552-96542571 | None:intergenic | 20.0% |
| !!! | ATTTTGATTCTCAAAATGTT+GGG | - | chr3.4:96541071-96541090 | MS.gene69127:intron | 20.0% |
| !!! | TAACCGTTTTTTTTTTCTTT+CGG | - | chr3.4:96540969-96540988 | MS.gene69127:intron | 20.0% |
| !!! | TCCTATAATAACTAATCTTT+TGG | - | chr3.4:96542548-96542567 | MS.gene69127:intron | 20.0% |
| ! | AACCCGAAAGAAAAAAAAAA+CGG | + | chr3.4:96540975-96540994 | None:intergenic | 25.0% |
| ! | AATTTGAACTGTTGTAATTG+AGG | - | chr3.4:96542800-96542819 | MS.gene69127:intron | 25.0% |
| ! | AGTTGAATCACATTAATTCT+AGG | + | chr3.4:96541918-96541937 | None:intergenic | 25.0% |
| ! | GGATAAGAATTCATAAAGTA+GGG | + | chr3.4:96541022-96541041 | None:intergenic | 25.0% |
| ! | TATCTTATTGAAGATGCTTA+TGG | - | chr3.4:96542577-96542596 | MS.gene69127:intron | 25.0% |
| ! | TATTTATTTATTGACCCTAC+CGG | - | chr3.4:96542149-96542168 | MS.gene69127:intron | 25.0% |
| ! | TCATTATTATTGAGATGGAA+TGG | + | chr3.4:96541865-96541884 | None:intergenic | 25.0% |
| ! | TGCAATTAACTAATTATCAG+TGG | - | chr3.4:96541470-96541489 | MS.gene69127:intron | 25.0% |
| ! | TGGATAAGAATTCATAAAGT+AGG | + | chr3.4:96541023-96541042 | None:intergenic | 25.0% |
| ! | TTTAGCTGTATAAATAATGC+AGG | - | chr3.4:96541610-96541629 | MS.gene69127:intron | 25.0% |
| !! | AAGTTCTACAACAAACTTTT+AGG | + | chr3.4:96542932-96542951 | None:intergenic | 25.0% |
| !! | AATAATTTTTATGTACCAGC+TGG | + | chr3.4:96542725-96542744 | None:intergenic | 25.0% |
| !! | AATCTAATGGGGATTTTATT+TGG | - | chr3.4:96541369-96541388 | MS.gene69127:CDS | 25.0% |
| !! | ACAAGAGTTCTTTATTTCAA+TGG | + | chr3.4:96542778-96542797 | None:intergenic | 25.0% |
| !! | ATAATTTTTATGTACCAGCT+GGG | + | chr3.4:96542724-96542743 | None:intergenic | 25.0% |
| !! | ATTGGATTTTCTGAATCTAA+TGG | - | chr3.4:96541356-96541375 | MS.gene69127:CDS | 25.0% |
| !! | CTGTTCTGTTTTATCTTAAA+GGG | - | chr3.4:96541819-96541838 | MS.gene69127:intron | 25.0% |
| !! | TTGGATTTTCTGAATCTAAT+GGG | - | chr3.4:96541357-96541376 | MS.gene69127:CDS | 25.0% |
| !!! | AACCGTTTTTTTTTTCTTTC+GGG | - | chr3.4:96540970-96540989 | MS.gene69127:intron | 25.0% |
| !!! | ATCTAATGGGGATTTTATTT+GGG | - | chr3.4:96541370-96541389 | MS.gene69127:CDS | 25.0% |
| !!! | ATTTTTTGCTGTTGTTTATG+TGG | - | chr3.4:96541122-96541141 | MS.gene69127:CDS | 25.0% |
| !!! | GTACGTACTTACTTTTAAAA+TGG | - | chr3.4:96542626-96542645 | MS.gene69127:intron | 25.0% |
| !!! | TACTTTTAAAATGGATTTGC+AGG | - | chr3.4:96542635-96542654 | MS.gene69127:intron | 25.0% |
| !!! | TATTAAAAATAGTACCGGTA+GGG | + | chr3.4:96542166-96542185 | None:intergenic | 25.0% |
| !!! | TTATTAAAAATAGTACCGGT+AGG | + | chr3.4:96542167-96542186 | None:intergenic | 25.0% |
| !!! | TTTTGATTCTCAAAATGTTG+GGG | - | chr3.4:96541072-96541091 | MS.gene69127:intron | 25.0% |
| !!! | TTTTTTGCTGTTGTTTATGT+GGG | - | chr3.4:96541123-96541142 | MS.gene69127:CDS | 25.0% |
| AAAATAATACCAAAGGAGGT+AGG | + | chr3.4:96541314-96541333 | None:intergenic | 30.0% | |
| AAAATTATCTAATGCGTCAG+TGG | + | chr3.4:96542407-96542426 | None:intergenic | 30.0% | |
| ATAATGCAGGTTCTTACTAA+TGG | - | chr3.4:96541623-96541642 | MS.gene69127:intron | 30.0% | |
| ATTGAAATCAAGTTTGTCGT+AGG | - | chr3.4:96541494-96541513 | MS.gene69127:intron | 30.0% | |
| ATTGCACGTTATCAAATTCA+AGG | + | chr3.4:96541721-96541740 | None:intergenic | 30.0% | |
| CAAGAAAGAAACACAATTTC+AGG | + | chr3.4:96542993-96543012 | None:intergenic | 30.0% | |
| TGCATGTTTCTCTTTATTAC+TGG | - | chr3.4:96541187-96541206 | MS.gene69127:intron | 30.0% | |
| TTGGAAAATAATACCAAAGG+AGG | + | chr3.4:96541318-96541337 | None:intergenic | 30.0% | |
| TTTCTCTTTATTACTGGATC+TGG | - | chr3.4:96541193-96541212 | MS.gene69127:intron | 30.0% | |
| TTTCTTTCTTGTGAAGCAAA+TGG | - | chr3.4:96543002-96543021 | MS.gene69127:CDS | 30.0% | |
| ! | CAACAAGAACAGATTTTGTA+CGG | + | chr3.4:96540699-96540718 | None:intergenic | 30.0% |
| ! | CTTTGTATATTTTCTGCAGA+AGG | - | chr3.4:96542460-96542479 | MS.gene69127:intron | 30.0% |
| ! | GATTTAAAGCTGATATACCA+TGG | + | chr3.4:96542362-96542381 | None:intergenic | 30.0% |
| ! | GCTGTTCTGTTTTATCTTAA+AGG | - | chr3.4:96541818-96541837 | MS.gene69127:intron | 30.0% |
| ! | TGGATTTTCTGAATCTAATG+GGG | - | chr3.4:96541358-96541377 | MS.gene69127:CDS | 30.0% |
| ! | TTCAAACCATTTTCTTGTGT+CGG | - | chr3.4:96540860-96540879 | MS.gene69127:intron | 30.0% |
| !! | TTGAATTTGATAACGTGCAA+TGG | - | chr3.4:96541720-96541739 | MS.gene69127:intron | 30.0% |
| !!! | TTTTAAAATGGATTTGCAGG+TGG | - | chr3.4:96542638-96542657 | MS.gene69127:intron | 30.0% |
| AATTGACCGACACAAGAAAA+TGG | + | chr3.4:96540869-96540888 | None:intergenic | 35.0% | |
| AGTATATTACCTACCTCCTT+TGG | - | chr3.4:96541302-96541321 | MS.gene69127:CDS | 35.0% | |
| ATTTGTCAATGCTGCAAAGA+GGG | - | chr3.4:96543047-96543066 | MS.gene69127:CDS | 35.0% | |
| CAATGGAATGGATCAGATAT+GGG | - | chr3.4:96541737-96541756 | MS.gene69127:intron | 35.0% | |
| CACAGAATGCATAGATCATT+GGG | - | chr3.4:96542259-96542278 | MS.gene69127:intron | 35.0% | |
| CAGAAACAAGTACTAGTACT+CGG | + | chr3.4:96541955-96541974 | None:intergenic | 35.0% | |
| CGTACAAAATCTGTTCTTGT+TGG | - | chr3.4:96540697-96540716 | MS.gene69127:intron | 35.0% | |
| CTGATATGCATGAATTGTGA+TGG | - | chr3.4:96542895-96542914 | MS.gene69127:CDS | 35.0% | |
| GAATTGAAGTGAAGCTACAA+AGG | - | chr3.4:96541645-96541664 | MS.gene69127:intron | 35.0% | |
| GAGAAACATGCAATGAATAC+AGG | + | chr3.4:96541179-96541198 | None:intergenic | 35.0% | |
| GCAATGGAAAGTTCAGTTAA+CGG | - | chr3.4:96540562-96540581 | MS.gene69127:CDS | 35.0% | |
| GGAAAAAAAGACACGCATAA+AGG | + | chr3.4:96542080-96542099 | None:intergenic | 35.0% | |
| GTTAAGAAAGCTGTTGGATT+AGG | - | chr3.4:96540733-96540752 | MS.gene69127:intron | 35.0% | |
| GTTTGCAAAGTGATAGAGTT+TGG | - | chr3.4:96542043-96542062 | MS.gene69127:intron | 35.0% | |
| TACAAATTCGGCGTAATTTG+TGG | + | chr3.4:96542869-96542888 | None:intergenic | 35.0% | |
| ! | CATACTAAGGTTGTTGTTAC+TGG | - | chr3.4:96540667-96540686 | MS.gene69127:intron | 35.0% |
| ! | GCAAAACACTAGAGTCTTTT+TGG | + | chr3.4:96542121-96542140 | None:intergenic | 35.0% |
| ! | GTGATAGAGTTTGGTAACAT+TGG | - | chr3.4:96542052-96542071 | MS.gene69127:intron | 35.0% |
| !! | TTTCTTGTGTCGGTCAATTT+TGG | - | chr3.4:96540870-96540889 | MS.gene69127:intron | 35.0% |
| !! | TTTGATAACGTGCAATGGAA+TGG | - | chr3.4:96541725-96541744 | MS.gene69127:intron | 35.0% |
| ACAACAACCTTAGTATGACG+AGG | + | chr3.4:96540664-96540683 | None:intergenic | 40.0% | |
| ATCATCTTCTTCATTGCCAG+TGG | + | chr3.4:96541696-96541715 | None:intergenic | 40.0% | |
| ATGGAAAGTTCAGTTAACGG+TGG | - | chr3.4:96540565-96540584 | MS.gene69127:CDS | 40.0% | |
| GATTTGTCAATGCTGCAAAG+AGG | - | chr3.4:96543046-96543065 | MS.gene69127:CDS | 40.0% | |
| GCAATGGAATGGATCAGATA+TGG | - | chr3.4:96541736-96541755 | MS.gene69127:intron | 40.0% | |
| GCACAGAATGCATAGATCAT+TGG | - | chr3.4:96542258-96542277 | MS.gene69127:intron | 40.0% | |
| TATCTAATGCGTCAGTGGTA+GGG | + | chr3.4:96542402-96542421 | None:intergenic | 40.0% | |
| TCATCTTCTTCATTGCCAGT+GGG | + | chr3.4:96541695-96541714 | None:intergenic | 40.0% | |
| TCTATCACTTTGCAAACCCA+TGG | + | chr3.4:96542040-96542059 | None:intergenic | 40.0% | |
| TCTGGTGATTCACAGTCTAA+GGG | - | chr3.4:96542313-96542332 | MS.gene69127:intron | 40.0% | |
| TGACTTGAGCAAGCTTGAAA+TGG | - | chr3.4:96542484-96542503 | MS.gene69127:intron | 40.0% | |
| TGTGTTACCTCGTCATACTA+AGG | - | chr3.4:96540654-96540673 | MS.gene69127:intron | 40.0% | |
| TTATCTAATGCGTCAGTGGT+AGG | + | chr3.4:96542403-96542422 | None:intergenic | 40.0% | |
| ! | AAGAAAGCTGTTGGATTAGG+TGG | - | chr3.4:96540736-96540755 | MS.gene69127:intron | 40.0% |
| ! | ACTCATTTGCAAAGCTTTGG+TGG | - | chr3.4:96540601-96540620 | MS.gene69127:CDS | 40.0% |
| ! | AGCTAGTTGATGTTGTTCAG+AGG | - | chr3.4:96542688-96542707 | MS.gene69127:intron | 40.0% |
| !! | TCTGTTCTTGTTGGTCTTCA+AGG | - | chr3.4:96540706-96540725 | MS.gene69127:intron | 40.0% |
| ACTTTGCAAACCCATGGTCA+TGG | + | chr3.4:96542034-96542053 | None:intergenic | 45.0% | |
| AGACTGTGAATCACCAGAGA+AGG | + | chr3.4:96542311-96542330 | None:intergenic | 45.0% | |
| AGCTTGAAATGGCTGCATTG+TGG | - | chr3.4:96542495-96542514 | MS.gene69127:intron | 45.0% | |
| CAACTAGCTGCTCCTTTGAT+GGG | + | chr3.4:96542677-96542696 | None:intergenic | 45.0% | |
| CACACAAGTCTCACAAATCG+AGG | - | chr3.4:96542236-96542255 | MS.gene69127:intron | 45.0% | |
| CATGTCACAAGACCATGAGT+AGG | - | chr3.4:96542284-96542303 | MS.gene69127:intron | 45.0% | |
| CTCTGGTGATTCACAGTCTA+AGG | - | chr3.4:96542312-96542331 | MS.gene69127:intron | 45.0% | |
| CTGGTGATTCACAGTCTAAG+GGG | - | chr3.4:96542314-96542333 | MS.gene69127:intron | 45.0% | |
| GAAAGTTCAGTTAACGGTGG+TGG | - | chr3.4:96540568-96540587 | MS.gene69127:CDS | 45.0% | |
| GACGAGTTGCAGGTCATTAA+GGG | - | chr3.4:96543024-96543043 | MS.gene69127:CDS | 45.0% | |
| GCGACTCATTTGCAAAGCTT+TGG | - | chr3.4:96540598-96540617 | MS.gene69127:CDS | 45.0% | |
| GGCGTTGTTAAGAAAGCTGT+TGG | - | chr3.4:96540727-96540746 | MS.gene69127:intron | 45.0% | |
| TCAACTAGCTGCTCCTTTGA+TGG | + | chr3.4:96542678-96542697 | None:intergenic | 45.0% | |
| TGATATACCATGGACCCATG+AGG | + | chr3.4:96542352-96542371 | None:intergenic | 45.0% | |
| TGGCTGCATTGTGGAGATAT+TGG | - | chr3.4:96542504-96542523 | MS.gene69127:intron | 45.0% | |
| ! | AAGCTGTTGGATTAGGTGGT+TGG | - | chr3.4:96540740-96540759 | MS.gene69127:intron | 45.0% |
| ! | CATTTGCAAAGCTTTGGTGG+TGG | - | chr3.4:96540604-96540623 | MS.gene69127:CDS | 45.0% |
| ! | TGGTGGTGATAGTAGTGAAG+AGG | - | chr3.4:96540624-96540643 | MS.gene69127:intron | 45.0% |
| ! | TTGGATTAGGTGGTTGGCAT+TGG | - | chr3.4:96540746-96540765 | MS.gene69127:intron | 45.0% |
| !!! | GTTTTGGCTTCCATGACCAT+GGG | - | chr3.4:96542021-96542040 | MS.gene69127:intron | 45.0% |
| !!! | TGTTTTGGCTTCCATGACCA+TGG | - | chr3.4:96542020-96542039 | MS.gene69127:intron | 45.0% |
| !! | CATTAATAATTAAAATATTA+AGG | + | chr3.4:96542433-96542452 | None:intergenic | 5.0% |
| ACCAGAGAAGGACCTACTCA+TGG | + | chr3.4:96542299-96542318 | None:intergenic | 50.0% | |
| ACCATGAGTAGGTCCTTCTC+TGG | - | chr3.4:96542295-96542314 | MS.gene69127:intron | 50.0% | |
| GAAGCAAATGGACGAGTTGC+AGG | - | chr3.4:96543014-96543033 | MS.gene69127:CDS | 50.0% | |
| GGACCCATGAGGCATAGTAA+CGG | + | chr3.4:96542341-96542360 | None:intergenic | 50.0% | |
| GGACGAGTTGCAGGTCATTA+AGG | - | chr3.4:96543023-96543042 | MS.gene69127:CDS | 50.0% | |
| GGTCCGTTACTATGCCTCAT+GGG | - | chr3.4:96542335-96542354 | MS.gene69127:intron | 50.0% | |
| TACTATGCCTCATGGGTCCA+TGG | - | chr3.4:96542342-96542361 | MS.gene69127:intron | 50.0% | |
| TGTCGTCCCAAACCCATCAA+AGG | - | chr3.4:96542662-96542681 | MS.gene69127:intron | 50.0% | |
| ! | AGTTCAGTTAACGGTGGTGG+TGG | - | chr3.4:96540571-96540590 | MS.gene69127:CDS | 50.0% |
| !! | AGCTGCTCCTTTGATGGGTT+TGG | + | chr3.4:96542672-96542691 | None:intergenic | 50.0% |
| !! | ATTAGGTGGTTGGCATTGGC+TGG | - | chr3.4:96540750-96540769 | MS.gene69127:intron | 50.0% |
| !! | GCTGCTCCTTTGATGGGTTT+GGG | + | chr3.4:96542671-96542690 | None:intergenic | 50.0% |
| !! | TTGCAAAGCTTTGGTGGTGG+TGG | - | chr3.4:96540607-96540626 | MS.gene69127:intron | 50.0% |
| GGGTCCGTTACTATGCCTCA+TGG | - | chr3.4:96542334-96542353 | MS.gene69127:intron | 55.0% | |
| ! | AGCGTGATTGAAGCACCCAC+TGG | - | chr3.4:96541677-96541696 | MS.gene69127:intron | 55.0% |
| ! | GAGGCATTTCATGTCCCAGC+TGG | - | chr3.4:96542707-96542726 | MS.gene69127:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 96540553 | 96543089 | 96540553 | ID=MS.gene69127 |
| chr3.4 | mRNA | 96540553 | 96543089 | 96540553 | ID=MS.gene69127.t1;Parent=MS.gene69127 |
| chr3.4 | exon | 96542871 | 96543089 | 96542871 | ID=MS.gene69127.t1.exon1;Parent=MS.gene69127.t1 |
| chr3.4 | CDS | 96542871 | 96543089 | 96542871 | ID=cds.MS.gene69127.t1;Parent=MS.gene69127.t1 |
| chr3.4 | exon | 96541884 | 96542010 | 96541884 | ID=MS.gene69127.t1.exon2;Parent=MS.gene69127.t1 |
| chr3.4 | CDS | 96541884 | 96542010 | 96541884 | ID=cds.MS.gene69127.t1;Parent=MS.gene69127.t1 |
| chr3.4 | exon | 96541279 | 96541418 | 96541279 | ID=MS.gene69127.t1.exon3;Parent=MS.gene69127.t1 |
| chr3.4 | CDS | 96541279 | 96541418 | 96541279 | ID=cds.MS.gene69127.t1;Parent=MS.gene69127.t1 |
| chr3.4 | exon | 96541101 | 96541163 | 96541101 | ID=MS.gene69127.t1.exon4;Parent=MS.gene69127.t1 |
| chr3.4 | CDS | 96541101 | 96541163 | 96541101 | ID=cds.MS.gene69127.t1;Parent=MS.gene69127.t1 |
| chr3.4 | exon | 96540914 | 96540985 | 96540914 | ID=MS.gene69127.t1.exon5;Parent=MS.gene69127.t1 |
| chr3.4 | CDS | 96540914 | 96540985 | 96540914 | ID=cds.MS.gene69127.t1;Parent=MS.gene69127.t1 |
| chr3.4 | exon | 96540553 | 96540624 | 96540553 | ID=MS.gene69127.t1.exon6;Parent=MS.gene69127.t1 |
| chr3.4 | CDS | 96540553 | 96540624 | 96540553 | ID=cds.MS.gene69127.t1;Parent=MS.gene69127.t1 |
| Gene Sequence |
| Protein sequence |
