Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69737.t1 | XP_003601451.1 | 99.1 | 443 | 4 | 0 | 1 | 443 | 1 | 443 | 4.00E-247 | 863.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69737.t1 | Q9SGU9 | 72.3 | 430 | 117 | 2 | 10 | 438 | 12 | 440 | 2.8e-177 | 622.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69737.t1 | G7J805 | 99.1 | 443 | 4 | 0 | 1 | 443 | 1 | 443 | 2.9e-247 | 863.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene24606 | MS.gene69737 | PPI |
| MS.gene75011 | MS.gene69737 | PPI |
| MS.gene029829 | MS.gene69737 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69737.t1 | MTR_3g080850 | 99.097 | 443 | 4 | 0 | 1 | 443 | 1 | 443 | 0.0 | 903 |
| MS.gene69737.t1 | MTR_1g077890 | 75.281 | 445 | 104 | 3 | 1 | 441 | 1 | 443 | 0.0 | 667 |
| MS.gene69737.t1 | MTR_6g012730 | 30.357 | 336 | 219 | 7 | 92 | 423 | 138 | 462 | 9.86e-43 | 157 |
| MS.gene69737.t1 | MTR_7g011230 | 30.030 | 333 | 218 | 7 | 92 | 420 | 196 | 517 | 1.03e-39 | 150 |
| MS.gene69737.t1 | MTR_1g064320 | 29.319 | 382 | 231 | 13 | 48 | 420 | 96 | 447 | 1.45e-36 | 140 |
| MS.gene69737.t1 | MTR_1g064320 | 29.319 | 382 | 231 | 13 | 48 | 420 | 97 | 448 | 1.78e-36 | 139 |
| MS.gene69737.t1 | MTR_6g012730 | 28.783 | 337 | 203 | 8 | 92 | 423 | 138 | 442 | 4.68e-34 | 133 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69737.t1 | AT1G64660 | 76.060 | 401 | 95 | 1 | 39 | 438 | 40 | 440 | 0.0 | 635 |
| MS.gene69737.t1 | AT3G01120 | 34.132 | 334 | 203 | 8 | 92 | 420 | 224 | 545 | 8.00e-52 | 183 |
| MS.gene69737.t1 | AT1G33320 | 30.655 | 336 | 215 | 9 | 90 | 420 | 33 | 355 | 5.56e-43 | 155 |
| MS.gene69737.t1 | AT1G33320 | 30.655 | 336 | 215 | 9 | 90 | 420 | 72 | 394 | 1.43e-42 | 155 |
| MS.gene69737.t1 | AT1G33320 | 29.907 | 321 | 207 | 9 | 105 | 420 | 3 | 310 | 3.17e-37 | 139 |
| MS.gene69737.t1 | AT3G57050 | 29.032 | 403 | 246 | 14 | 46 | 439 | 13 | 384 | 6.03e-36 | 137 |
| MS.gene69737.t1 | AT3G57050 | 29.032 | 403 | 246 | 14 | 46 | 439 | 35 | 406 | 8.30e-36 | 137 |
| MS.gene69737.t1 | AT3G57050 | 29.032 | 403 | 246 | 14 | 46 | 439 | 76 | 447 | 2.23e-35 | 136 |
| MS.gene69737.t1 | AT3G57050 | 29.032 | 403 | 246 | 14 | 46 | 439 | 91 | 462 | 2.63e-35 | 136 |
| MS.gene69737.t1 | AT3G57050 | 31.613 | 310 | 175 | 12 | 46 | 341 | 91 | 377 | 3.19e-31 | 123 |
Find 121 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCAAAACTATGCTCATTT+TGG | 0.190448 | 3.4:-77007357 | MS.gene69737:CDS |
| GCCAATGCCCGCCATGAATT+TGG | 0.195339 | 3.4:-77009016 | MS.gene69737:CDS |
| GTGGCTTCTAGTACTCTTTA+TGG | 0.228110 | 3.4:-77008728 | MS.gene69737:CDS |
| AGCTAGGATTGCACACAAAA+AGG | 0.264016 | 3.4:-77008528 | MS.gene69737:CDS |
| GACAGTTCAAATGCTACCTT+TGG | 0.325926 | 3.4:+77007606 | None:intergenic |
| GCATTGGCGAGTGCGGCCTC+TGG | 0.329540 | 3.4:+77009031 | None:intergenic |
| ATGAATTTGGCGAACATGGC+GGG | 0.358137 | 3.4:-77009003 | MS.gene69737:CDS |
| GCTACCTTTGGGTTCATTGT+TGG | 0.369052 | 3.4:+77007618 | None:intergenic |
| GAGGAGGAACAGAAACTTGC+TGG | 0.376846 | 3.4:-77007258 | MS.gene69737:CDS |
| CGCCATGAATTTGGCGAACA+TGG | 0.377759 | 3.4:-77009007 | MS.gene69737:CDS |
| CGCCATGTTCGCCAAATTCA+TGG | 0.382098 | 3.4:+77009005 | None:intergenic |
| GGCTGAGATTGAGGACGGTT+GGG | 0.382101 | 3.4:+77008858 | None:intergenic |
| GGTGGTGGTGACATTATTGC+AGG | 0.382112 | 3.4:-77008404 | MS.gene69737:intron |
| ACTACCAGAGCAAGACATTA+GGG | 0.386384 | 3.4:+77007302 | None:intergenic |
| CATGCCACTGGCTGTACAAT+AGG | 0.392928 | 3.4:+77008802 | None:intergenic |
| CATTGGCGAGTGCGGCCTCT+GGG | 0.403366 | 3.4:+77009032 | None:intergenic |
| CGGCTGAGATTGAGGACGGT+TGG | 0.412741 | 3.4:+77008857 | None:intergenic |
| CTGTAAAAGAACTGCAGAAA+TGG | 0.415766 | 3.4:+77008775 | None:intergenic |
| GCCAAATTCATGGCGGGCAT+TGG | 0.417529 | 3.4:+77009015 | None:intergenic |
| GGCAACAAAAGTTATGGTTA+TGG | 0.429995 | 3.4:-77007438 | MS.gene69737:CDS |
| TACTACCAGAGCAAGACATT+AGG | 0.431550 | 3.4:+77007301 | None:intergenic |
| CCTAGCTAGCTCAGGAGTAT+TGG | 0.444269 | 3.4:+77008544 | None:intergenic |
| CTGCTTTCTCCTGCTCGTCT+TGG | 0.446270 | 3.4:-77008467 | MS.gene69737:CDS |
| AAAATATTTGCCGGAGAGCT+TGG | 0.448281 | 3.4:-77008920 | MS.gene69737:CDS |
| CTTCGAGGGCCGCCATCTTA+CGG | 0.450790 | 3.4:+77008837 | None:intergenic |
| ATTCTCAACTGCTTCCAAAT+CGG | 0.458070 | 3.4:+77008634 | None:intergenic |
| ACTCTCCGCAAAATATTTGC+CGG | 0.462891 | 3.4:-77008929 | MS.gene69737:CDS |
| CCAATACTCCTGAGCTAGCT+AGG | 0.463921 | 3.4:-77008544 | MS.gene69737:CDS |
| TCAAGGAGCCATGATGCTGC+TGG | 0.465864 | 3.4:-77007643 | MS.gene69737:CDS |
| TCCATAGGCAACAAAAGTTA+TGG | 0.473714 | 3.4:-77007444 | MS.gene69737:CDS |
| TGGGATTCTTTGTGTTGACA+TGG | 0.474228 | 3.4:-77007415 | MS.gene69737:CDS |
| CTTGAAAACGATGTTGTTGA+GGG | 0.476011 | 3.4:-77009106 | MS.gene69737:CDS |
| AGGCAGCCTCGGTGCCTTCG+AGG | 0.480260 | 3.4:+77008822 | None:intergenic |
| GGGATTCTTTGTGTTGACAT+GGG | 0.496704 | 3.4:-77007414 | MS.gene69737:CDS |
| CAGCCACGGCGGACATGTTG+TGG | 0.499450 | 3.4:-77008747 | MS.gene69737:CDS |
| GGACTCAATGTGATCTATCC+TGG | 0.499685 | 3.4:-77007501 | MS.gene69737:CDS |
| CCATCTTACGGCTGAGATTG+AGG | 0.506032 | 3.4:+77008849 | None:intergenic |
| GCCGGAGAGCTTGGTCATGA+AGG | 0.506111 | 3.4:-77008911 | MS.gene69737:CDS |
| CAAGGAGCCATGATGCTGCT+GGG | 0.506322 | 3.4:-77007642 | MS.gene69737:CDS |
| GGCTGTACAATAGGCAGCCT+CGG | 0.508312 | 3.4:+77008811 | None:intergenic |
| CCTCAATCTCAGCCGTAAGA+TGG | 0.509888 | 3.4:-77008849 | MS.gene69737:CDS |
| GTCAGAGAGAATCCCACACC+TGG | 0.515259 | 3.4:-77007586 | MS.gene69737:CDS |
| ACTGACATCCTCACCATCCC+TGG | 0.518257 | 3.4:+77007228 | None:intergenic |
| AACGCATTGATGGGAATTCA+AGG | 0.519505 | 3.4:-77007660 | MS.gene69737:CDS |
| ACAGTTCAAATGCTACCTTT+GGG | 0.519702 | 3.4:+77007607 | None:intergenic |
| TGACTCAAAATACAGCACTT+TGG | 0.522359 | 3.4:+77008592 | None:intergenic |
| CATGCTGTGGATGATCTTCA+AGG | 0.523751 | 3.4:+77007478 | None:intergenic |
| GACTGTGTTCTTTCATGCGA+AGG | 0.524215 | 3.4:+77007562 | None:intergenic |
| AGAAATGCTGCAAAAGTGCA+TGG | 0.526399 | 3.4:+77008699 | None:intergenic |
| AGAAATGGCGGACATGCCAC+TGG | 0.527021 | 3.4:+77008790 | None:intergenic |
| GTATTGGCCACATTCAAGCT+TGG | 0.529452 | 3.4:+77008560 | None:intergenic |
| GGCAGCCTCGGTGCCTTCGA+GGG | 0.529893 | 3.4:+77008823 | None:intergenic |
| TGTTGGCCCCAGCAGCATCA+TGG | 0.530505 | 3.4:+77007635 | None:intergenic |
| CCTTGAAAACGATGTTGTTG+AGG | 0.531661 | 3.4:-77009107 | MS.gene69737:CDS |
| CTTCTAGTACTCTTTATGGT+GGG | 0.532023 | 3.4:-77008724 | MS.gene69737:CDS |
| GGATTCTTTGTGTTGACATG+GGG | 0.532362 | 3.4:-77007413 | MS.gene69737:CDS |
| AACAAAAGTTATGGTTATGG+TGG | 0.536628 | 3.4:-77007435 | MS.gene69737:CDS |
| GGAGCAGAAGTGGAGTCAGC+TGG | 0.536681 | 3.4:-77007187 | MS.gene69737:CDS |
| TGTGCAATCCTAGCTAGCTC+AGG | 0.537083 | 3.4:+77008536 | None:intergenic |
| ATGTTCGCCAAATTCATGGC+GGG | 0.537556 | 3.4:+77009009 | None:intergenic |
| ATCTCTAAGTTTATCAGTGG+TGG | 0.542218 | 3.4:-77008422 | MS.gene69737:CDS |
| TCTAAGTTTATCAGTGGTGG+TGG | 0.543204 | 3.4:-77008419 | MS.gene69737:CDS |
| TCATGCGAAGGCCCAGGTGT+GGG | 0.543259 | 3.4:+77007574 | None:intergenic |
| GAAACCCTAATGTCTTGCTC+TGG | 0.544821 | 3.4:-77007306 | MS.gene69737:CDS |
| CGAGCAGGAGAAAGCAGCAT+AGG | 0.546115 | 3.4:+77008473 | None:intergenic |
| TTGGAACATTGGAGCAGAAG+TGG | 0.548304 | 3.4:-77007197 | MS.gene69737:CDS |
| CGTAAGATGGCGGCCCTCGA+AGG | 0.549334 | 3.4:-77008836 | MS.gene69737:CDS |
| GTTCTTTCATGCGAAGGCCC+AGG | 0.550181 | 3.4:+77007568 | None:intergenic |
| AGAAAGCAGCATAGGAGCAA+AGG | 0.550769 | 3.4:+77008481 | None:intergenic |
| CGGGGTTAACATGTCGATTG+AGG | 0.551059 | 3.4:-77008984 | MS.gene69737:CDS |
| AGTTGGATACATTGGAACAT+TGG | 0.552093 | 3.4:-77007208 | MS.gene69737:CDS |
| AGAACACAGTCATCGTGCAT+TGG | 0.554112 | 3.4:-77007550 | MS.gene69737:CDS |
| GCTTCTAGTACTCTTTATGG+TGG | 0.554413 | 3.4:-77008725 | MS.gene69737:CDS |
| ACATCTGCACCAAGACGAGC+AGG | 0.554578 | 3.4:+77008458 | None:intergenic |
| CACAAGTAGTGAGCTGAATG+AGG | 0.555659 | 3.4:-77007277 | MS.gene69737:CDS |
| TGCTCGTCTTGGTGCAGATG+TGG | 0.556305 | 3.4:-77008456 | MS.gene69737:CDS |
| TGTGGATGATCTTCAAGGCC+AGG | 0.556561 | 3.4:+77007483 | None:intergenic |
| ACAAAAGTTATGGTTATGGT+GGG | 0.556650 | 3.4:-77007434 | MS.gene69737:CDS |
| TGAATTTGGCGAACATGGCG+GGG | 0.557188 | 3.4:-77009002 | MS.gene69737:CDS |
| AAACTTGCTGGGATTACACC+AGG | 0.558665 | 3.4:-77007246 | MS.gene69737:CDS |
| GCCTTCATGACCAAGCTCTC+CGG | 0.559070 | 3.4:+77008910 | None:intergenic |
| TTCATGCGAAGGCCCAGGTG+TGG | 0.560694 | 3.4:+77007573 | None:intergenic |
| CTCTGCTACCTTCACCGTCA+TGG | 0.561142 | 3.4:-77008960 | MS.gene69737:CDS |
| AGGATGTCAGTTGGATACAT+TGG | 0.562882 | 3.4:-77007216 | MS.gene69737:CDS |
| GTTGAGAATGCAATTGTGGA+AGG | 0.566748 | 3.4:-77008620 | MS.gene69737:CDS |
| ATGGCGGGCATTGGCGAGTG+CGG | 0.568985 | 3.4:+77009024 | None:intergenic |
| TTGAGACATGGCGGATACGT+TGG | 0.577084 | 3.4:-77009161 | None:intergenic |
| GGACGGTTGGGTTGAAATGA+CGG | 0.578007 | 3.4:+77008870 | None:intergenic |
| ATCTGGTTCCATGACGGTGA+AGG | 0.582243 | 3.4:+77008952 | None:intergenic |
| TGCTGGGATTACACCAGGGA+TGG | 0.593726 | 3.4:-77007241 | MS.gene69737:CDS |
| TGCAAATCCAAGCTTGAATG+TGG | 0.596227 | 3.4:-77008567 | MS.gene69737:CDS |
| AAGGAGCCATGATGCTGCTG+GGG | 0.605331 | 3.4:-77007641 | MS.gene69737:CDS |
| GGATTACACCAGGGATGGTG+AGG | 0.605740 | 3.4:-77007236 | MS.gene69737:CDS |
| AGGAGGAACAGAAACTTGCT+GGG | 0.605841 | 3.4:-77007257 | MS.gene69737:CDS |
| AGCAGTTGAGAATGCAATTG+TGG | 0.608406 | 3.4:-77008624 | MS.gene69737:CDS |
| CATGAACTATTGAAATCCAT+AGG | 0.612583 | 3.4:-77007459 | MS.gene69737:CDS |
| CTTACGGCTGAGATTGAGGA+CGG | 0.623850 | 3.4:+77008853 | None:intergenic |
| GAAATGCTGCAAAAGTGCAT+GGG | 0.625620 | 3.4:+77008700 | None:intergenic |
| TTGTGTTGACATGGGGACAG+TGG | 0.626253 | 3.4:-77007406 | MS.gene69737:CDS |
| CATGAATTTGGCGAACATGG+CGG | 0.628117 | 3.4:-77009004 | MS.gene69737:CDS |
| GGGATGGTGAGGATGTCAGT+TGG | 0.628293 | 3.4:-77007225 | MS.gene69737:CDS |
| TAAAAGAACTGCAGAAATGG+CGG | 0.633629 | 3.4:+77008778 | None:intergenic |
| GAGAGTATCTGGTTCCATGA+CGG | 0.637077 | 3.4:+77008946 | None:intergenic |
| AGTATCTCTAAGTTTATCAG+TGG | 0.640242 | 3.4:-77008425 | MS.gene69737:CDS |
| GATTTCAATAGTTCATGCTG+TGG | 0.640950 | 3.4:+77007465 | None:intergenic |
| AAACTGATGAAATTCAATGG+TGG | 0.645291 | 3.4:-77009070 | MS.gene69737:CDS |
| TTGAGAATGCAATTGTGGAA+GGG | 0.657804 | 3.4:-77008619 | MS.gene69737:CDS |
| AAAATGACAGGAGCTGTGTG+TGG | 0.660955 | 3.4:-77007699 | MS.gene69737:intron |
| GGCGGCCCTCGAAGGCACCG+AGG | 0.660961 | 3.4:-77008828 | MS.gene69737:CDS |
| CAATCTCAGCCGTAAGATGG+CGG | 0.663207 | 3.4:-77008846 | MS.gene69737:CDS |
| GCTGCCTATTGTACAGCCAG+TGG | 0.663963 | 3.4:-77008806 | MS.gene69737:CDS |
| AAGTAGTGAGCTGAATGAGG+AGG | 0.679239 | 3.4:-77007274 | MS.gene69737:CDS |
| CATGACGGTGAAGGTAGCAG+AGG | 0.682224 | 3.4:+77008961 | None:intergenic |
| GGGGCCAACAATGAACCCAA+AGG | 0.683668 | 3.4:-77007622 | MS.gene69737:CDS |
| AAGCCACAACATGTCCGCCG+TGG | 0.684164 | 3.4:+77008744 | None:intergenic |
| TCAGAGAGAATCCCACACCT+GGG | 0.688572 | 3.4:-77007585 | MS.gene69737:CDS |
| AACTTGCTGGGATTACACCA+GGG | 0.702488 | 3.4:-77007245 | MS.gene69737:CDS |
| AAATGACAGGAGCTGTGTGT+GGG | 0.705210 | 3.4:-77007698 | MS.gene69737:intron |
| AGAGTCTGACGTAGACCCAG+AGG | 0.711524 | 3.4:-77009047 | MS.gene69737:CDS |
| CATGTTCGCCAAATTCATGG+CGG | 0.742307 | 3.4:+77009008 | None:intergenic |
| TTACAGCTCTGCAGCCACGG+CGG | 0.750934 | 3.4:-77008758 | MS.gene69737:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAAAATAACTTTTTTTTTTA+AGG | + | chr3.4:77008492-77008511 | None:intergenic | 10.0% |
| !!! | GAATAATATATTTTAAACAA+AGG | + | chr3.4:77008048-77008067 | None:intergenic | 10.0% |
| !! | AATTCTTTAATATAAAAGAC+CGG | + | chr3.4:77008208-77008227 | None:intergenic | 15.0% |
| !!! | AATTAATTTTAAAATGTCTC+CGG | - | chr3.4:77008186-77008205 | MS.gene69737:intron | 15.0% |
| !!! | ATATATTTTAAACAAAGGAA+AGG | + | chr3.4:77008043-77008062 | None:intergenic | 15.0% |
| !! | AAAAAACTGATGAAATTCAA+TGG | - | chr3.4:77007233-77007252 | MS.gene69737:CDS | 20.0% |
| !! | ATAGAGTAATATTAATAACG+TGG | - | chr3.4:77008334-77008353 | MS.gene69737:intron | 20.0% |
| !! | CTTTCAAAGAAAAAAATTGT+TGG | + | chr3.4:77008077-77008096 | None:intergenic | 20.0% |
| !! | TCATAAAACTATACAATGTA+CGG | + | chr3.4:77008134-77008153 | None:intergenic | 20.0% |
| !!! | ATTGAATTTCATCAGTTTTT+TGG | + | chr3.4:77007234-77007253 | None:intergenic | 20.0% |
| ! | ATTCAACTATTTGCCTAATA+TGG | + | chr3.4:77007989-77008008 | None:intergenic | 25.0% |
| ! | CACTCAAACAAATATAATGT+TGG | + | chr3.4:77008108-77008127 | None:intergenic | 25.0% |
| ! | GCAAAATAGTAGATTTCTAT+TGG | - | chr3.4:77008356-77008375 | MS.gene69737:intron | 25.0% |
| !! | AGTTTGGTAATTCATAATAG+TGG | + | chr3.4:77007957-77007976 | None:intergenic | 25.0% |
| !!! | TCAAACTCACGTTTTTTTAA+AGG | + | chr3.4:77008520-77008539 | None:intergenic | 25.0% |
| AAACTGATGAAATTCAATGG+TGG | - | chr3.4:77007236-77007255 | MS.gene69737:CDS | 30.0% | |
| AACAAAAGTTATGGTTATGG+TGG | - | chr3.4:77008871-77008890 | MS.gene69737:CDS | 30.0% | |
| AATATGGCGAAACAAAAGTT+TGG | + | chr3.4:77007973-77007992 | None:intergenic | 30.0% | |
| ACAAAAGTTATGGTTATGGT+GGG | - | chr3.4:77008872-77008891 | MS.gene69737:CDS | 30.0% | |
| AGTATCTCTAAGTTTATCAG+TGG | - | chr3.4:77007881-77007900 | MS.gene69737:intron | 30.0% | |
| CATGAACTATTGAAATCCAT+AGG | - | chr3.4:77008847-77008866 | MS.gene69737:CDS | 30.0% | |
| ! | TTGCAAAACTATGCTCATTT+TGG | - | chr3.4:77008949-77008968 | MS.gene69737:CDS | 30.0% |
| ! | TTTGAAACCTTGAAAATGAC+AGG | - | chr3.4:77008595-77008614 | MS.gene69737:CDS | 30.0% |
| ! | TTTTGTTGACATATCCGATT+TGG | - | chr3.4:77007658-77007677 | MS.gene69737:CDS | 30.0% |
| !! | AACTTTTGTTTCGCCATATT+AGG | - | chr3.4:77007973-77007992 | MS.gene69737:intron | 30.0% |
| !! | GTTTTATGGCTGTTAGTTTA+GGG | - | chr3.4:77008971-77008990 | MS.gene69737:CDS | 30.0% |
| !!! | CTATGCTCATTTTGGTTTTA+TGG | - | chr3.4:77008957-77008976 | MS.gene69737:CDS | 30.0% |
| !!! | GTTGTACACTTTATTTTGAG+AGG | + | chr3.4:77008570-77008589 | None:intergenic | 30.0% |
| ACAGTTCAAATGCTACCTTT+GGG | + | chr3.4:77008702-77008721 | None:intergenic | 35.0% | |
| AGTGGTCACAATTATGTGAA+AGG | + | chr3.4:77007939-77007958 | None:intergenic | 35.0% | |
| AGTTGGATACATTGGAACAT+TGG | - | chr3.4:77009098-77009117 | MS.gene69737:CDS | 35.0% | |
| ATCTCTAAGTTTATCAGTGG+TGG | - | chr3.4:77007884-77007903 | MS.gene69737:intron | 35.0% | |
| ATTCTCAACTGCTTCCAAAT+CGG | + | chr3.4:77007675-77007694 | None:intergenic | 35.0% | |
| CTGTAAAAGAACTGCAGAAA+TGG | + | chr3.4:77007534-77007553 | None:intergenic | 35.0% | |
| CTTCTAGTACTCTTTATGGT+GGG | - | chr3.4:77007582-77007601 | MS.gene69737:CDS | 35.0% | |
| CTTGAAAACGATGTTGTTGA+GGG | - | chr3.4:77007200-77007219 | MS.gene69737:CDS | 35.0% | |
| GATTTCAATAGTTCATGCTG+TGG | + | chr3.4:77008844-77008863 | None:intergenic | 35.0% | |
| GCAACCAGACTCAAAAAATT+AGG | - | chr3.4:77008784-77008803 | MS.gene69737:CDS | 35.0% | |
| GGCAACAAAAGTTATGGTTA+TGG | - | chr3.4:77008868-77008887 | MS.gene69737:CDS | 35.0% | |
| TAAAAGAACTGCAGAAATGG+CGG | + | chr3.4:77007531-77007550 | None:intergenic | 35.0% | |
| TCCATAGGCAACAAAAGTTA+TGG | - | chr3.4:77008862-77008881 | MS.gene69737:CDS | 35.0% | |
| TGACTCAAAATACAGCACTT+TGG | + | chr3.4:77007717-77007736 | None:intergenic | 35.0% | |
| TTGAGAATGCAATTGTGGAA+GGG | - | chr3.4:77007687-77007706 | MS.gene69737:CDS | 35.0% | |
| ! | ACCATAACTTTTGTTGCCTA+TGG | + | chr3.4:77008866-77008885 | None:intergenic | 35.0% |
| ! | TTTTGCAGCATTTCTTTGTG+AGG | - | chr3.4:77007615-77007634 | MS.gene69737:CDS | 35.0% |
| !! | AAGTTTTGTGAACGCATTGA+TGG | - | chr3.4:77008636-77008655 | MS.gene69737:CDS | 35.0% |
| !! | AGTTTTGTGAACGCATTGAT+GGG | - | chr3.4:77008637-77008656 | MS.gene69737:CDS | 35.0% |
| !! | GGTTTTATGGCTGTTAGTTT+AGG | - | chr3.4:77008970-77008989 | MS.gene69737:CDS | 35.0% |
| !!! | AATATTTTGCGGAGAGTATC+TGG | + | chr3.4:77007374-77007393 | None:intergenic | 35.0% |
| !!! | GAGTCCTAATTTTTTGAGTC+TGG | + | chr3.4:77008791-77008810 | None:intergenic | 35.0% |
| AAAATATTTGCCGGAGAGCT+TGG | - | chr3.4:77007386-77007405 | MS.gene69737:CDS | 40.0% | |
| ACTACCAGAGCAAGACATTA+GGG | + | chr3.4:77009007-77009026 | None:intergenic | 40.0% | |
| ACTCTCCGCAAAATATTTGC+CGG | - | chr3.4:77007377-77007396 | MS.gene69737:CDS | 40.0% | |
| AGCAGTTGAGAATGCAATTG+TGG | - | chr3.4:77007682-77007701 | MS.gene69737:CDS | 40.0% | |
| AGCTAGGATTGCACACAAAA+AGG | - | chr3.4:77007778-77007797 | MS.gene69737:intron | 40.0% | |
| AGGATGTCAGTTGGATACAT+TGG | - | chr3.4:77009090-77009109 | MS.gene69737:CDS | 40.0% | |
| CCTTGAAAACGATGTTGTTG+AGG | - | chr3.4:77007199-77007218 | MS.gene69737:CDS | 40.0% | |
| GACAGTTCAAATGCTACCTT+TGG | + | chr3.4:77008703-77008722 | None:intergenic | 40.0% | |
| GCTAGGATTGCACACAAAAA+GGG | - | chr3.4:77007779-77007798 | MS.gene69737:intron | 40.0% | |
| GCTTCTAGTACTCTTTATGG+TGG | - | chr3.4:77007581-77007600 | MS.gene69737:CDS | 40.0% | |
| GTGGCTTCTAGTACTCTTTA+TGG | - | chr3.4:77007578-77007597 | MS.gene69737:CDS | 40.0% | |
| GTTGAGAATGCAATTGTGGA+AGG | - | chr3.4:77007686-77007705 | MS.gene69737:CDS | 40.0% | |
| TACTACCAGAGCAAGACATT+AGG | + | chr3.4:77009008-77009027 | None:intergenic | 40.0% | |
| TCTAAGTTTATCAGTGGTGG+TGG | - | chr3.4:77007887-77007906 | MS.gene69737:intron | 40.0% | |
| TGCAAATCCAAGCTTGAATG+TGG | - | chr3.4:77007739-77007758 | MS.gene69737:intron | 40.0% | |
| ! | AACGCATTGATGGGAATTCA+AGG | - | chr3.4:77008646-77008665 | MS.gene69737:CDS | 40.0% |
| ! | AGAAATGCTGCAAAAGTGCA+TGG | + | chr3.4:77007610-77007629 | None:intergenic | 40.0% |
| ! | CCTCAACAACATCGTTTTCA+AGG | + | chr3.4:77007202-77007221 | None:intergenic | 40.0% |
| ! | GAAATGCTGCAAAAGTGCAT+GGG | + | chr3.4:77007609-77007628 | None:intergenic | 40.0% |
| ! | GGATTCTTTGTGTTGACATG+GGG | - | chr3.4:77008893-77008912 | MS.gene69737:CDS | 40.0% |
| ! | GGGATTCTTTGTGTTGACAT+GGG | - | chr3.4:77008892-77008911 | MS.gene69737:CDS | 40.0% |
| ! | TGGGATTCTTTGTGTTGACA+TGG | - | chr3.4:77008891-77008910 | MS.gene69737:CDS | 40.0% |
| AAAATGACAGGAGCTGTGTG+TGG | - | chr3.4:77008607-77008626 | MS.gene69737:CDS | 45.0% | |
| AAATGACAGGAGCTGTGTGT+GGG | - | chr3.4:77008608-77008627 | MS.gene69737:CDS | 45.0% | |
| AAGTAGTGAGCTGAATGAGG+AGG | - | chr3.4:77009032-77009051 | MS.gene69737:CDS | 45.0% | |
| ACACAAAAAGGGAGTGACTG+TGG | - | chr3.4:77007790-77007809 | MS.gene69737:intron | 45.0% | |
| AGAAAGCAGCATAGGAGCAA+AGG | + | chr3.4:77007828-77007847 | None:intergenic | 45.0% | |
| AGAACACAGTCATCGTGCAT+TGG | - | chr3.4:77008756-77008775 | MS.gene69737:CDS | 45.0% | |
| ATGAATTTGGCGAACATGGC+GGG | - | chr3.4:77007303-77007322 | MS.gene69737:CDS | 45.0% | |
| ATGTTCGCCAAATTCATGGC+GGG | + | chr3.4:77007300-77007319 | None:intergenic | 45.0% | |
| CACAAGTAGTGAGCTGAATG+AGG | - | chr3.4:77009029-77009048 | MS.gene69737:CDS | 45.0% | |
| CATGAATTTGGCGAACATGG+CGG | - | chr3.4:77007302-77007321 | MS.gene69737:CDS | 45.0% | |
| CATGCTGTGGATGATCTTCA+AGG | + | chr3.4:77008831-77008850 | None:intergenic | 45.0% | |
| CATGTTCGCCAAATTCATGG+CGG | + | chr3.4:77007301-77007320 | None:intergenic | 45.0% | |
| GAAACCCTAATGTCTTGCTC+TGG | - | chr3.4:77009000-77009019 | MS.gene69737:CDS | 45.0% | |
| GACTGTGTTCTTTCATGCGA+AGG | + | chr3.4:77008747-77008766 | None:intergenic | 45.0% | |
| GGACTCAATGTGATCTATCC+TGG | - | chr3.4:77008805-77008824 | MS.gene69737:CDS | 45.0% | |
| TTGGAACATTGGAGCAGAAG+TGG | - | chr3.4:77009109-77009128 | MS.gene69737:CDS | 45.0% | |
| ! | AGGAGGAACAGAAACTTGCT+GGG | - | chr3.4:77009049-77009068 | MS.gene69737:CDS | 45.0% |
| ! | GCTACCTTTGGGTTCATTGT+TGG | + | chr3.4:77008691-77008710 | None:intergenic | 45.0% |
| ! | GCTCTCCGGCAAATATTTTG+CGG | + | chr3.4:77007385-77007404 | None:intergenic | 45.0% |
| ! | GTATTGGCCACATTCAAGCT+TGG | + | chr3.4:77007749-77007768 | None:intergenic | 45.0% |
| !! | AAACTTGCTGGGATTACACC+AGG | - | chr3.4:77009060-77009079 | MS.gene69737:CDS | 45.0% |
| !! | AACTTGCTGGGATTACACCA+GGG | - | chr3.4:77009061-77009080 | MS.gene69737:CDS | 45.0% |
| !! | GAGAGTATCTGGTTCCATGA+CGG | + | chr3.4:77007363-77007382 | None:intergenic | 45.0% |
| !!! | CACAGCTCCTGTCATTTTCA+AGG | + | chr3.4:77008605-77008624 | None:intergenic | 45.0% |
| !! | TTAAAATTAATTATATGATT+TGG | + | chr3.4:77008178-77008197 | None:intergenic | 5.0% |
| CAAAAAGGGAGTGACTGTGG+TGG | - | chr3.4:77007793-77007812 | MS.gene69737:intron | 50.0% | |
| CAATCTCAGCCGTAAGATGG+CGG | - | chr3.4:77007460-77007479 | MS.gene69737:CDS | 50.0% | |
| CCAATACTCCTGAGCTAGCT+AGG | - | chr3.4:77007762-77007781 | MS.gene69737:intron | 50.0% | |
| CCATCTTACGGCTGAGATTG+AGG | + | chr3.4:77007460-77007479 | None:intergenic | 50.0% | |
| CCTCAATCTCAGCCGTAAGA+TGG | - | chr3.4:77007457-77007476 | MS.gene69737:CDS | 50.0% | |
| CGCCATGAATTTGGCGAACA+TGG | - | chr3.4:77007299-77007318 | MS.gene69737:CDS | 50.0% | |
| CGCCATGTTCGCCAAATTCA+TGG | + | chr3.4:77007304-77007323 | None:intergenic | 50.0% | |
| CTTACGGCTGAGATTGAGGA+CGG | + | chr3.4:77007456-77007475 | None:intergenic | 50.0% | |
| GAGGAGGAACAGAAACTTGC+TGG | - | chr3.4:77009048-77009067 | MS.gene69737:CDS | 50.0% | |
| TCAGAGAGAATCCCACACCT+GGG | - | chr3.4:77008721-77008740 | MS.gene69737:CDS | 50.0% | |
| TGAATTTGGCGAACATGGCG+GGG | - | chr3.4:77007304-77007323 | MS.gene69737:CDS | 50.0% | |
| TGTGCAATCCTAGCTAGCTC+AGG | + | chr3.4:77007773-77007792 | None:intergenic | 50.0% | |
| TGTGGATGATCTTCAAGGCC+AGG | + | chr3.4:77008826-77008845 | None:intergenic | 50.0% | |
| ! | ATCTGGTTCCATGACGGTGA+AGG | + | chr3.4:77007357-77007376 | None:intergenic | 50.0% |
| ! | CATGCCACTGGCTGTACAAT+AGG | + | chr3.4:77007507-77007526 | None:intergenic | 50.0% |
| ! | CCTAGCTAGCTCAGGAGTAT+TGG | + | chr3.4:77007765-77007784 | None:intergenic | 50.0% |
| ! | CGGGGTTAACATGTCGATTG+AGG | - | chr3.4:77007322-77007341 | MS.gene69737:CDS | 50.0% |
| ! | CTTTTACAGCTCTGCAGCCA+CGG | - | chr3.4:77007545-77007564 | MS.gene69737:CDS | 50.0% |
| ! | GGTGGTGGTGACATTATTGC+AGG | - | chr3.4:77007902-77007921 | MS.gene69737:intron | 50.0% |
| ! | TTGTGTTGACATGGGGACAG+TGG | - | chr3.4:77008900-77008919 | MS.gene69737:CDS | 50.0% |
| !! | GGACGGTTGGGTTGAAATGA+CGG | + | chr3.4:77007439-77007458 | None:intergenic | 50.0% |
| AAGGAGCCATGATGCTGCTG+GGG | - | chr3.4:77008665-77008684 | MS.gene69737:CDS | 55.0% | |
| ACATCTGCACCAAGACGAGC+AGG | + | chr3.4:77007851-77007870 | None:intergenic | 55.0% | |
| ACTGACATCCTCACCATCCC+TGG | + | chr3.4:77009081-77009100 | None:intergenic | 55.0% | |
| AGAGTCTGACGTAGACCCAG+AGG | - | chr3.4:77007259-77007278 | MS.gene69737:CDS | 55.0% | |
| CAAGGAGCCATGATGCTGCT+GGG | - | chr3.4:77008664-77008683 | MS.gene69737:CDS | 55.0% | |
| CATGACGGTGAAGGTAGCAG+AGG | + | chr3.4:77007348-77007367 | None:intergenic | 55.0% | |
| CGAGCAGGAGAAAGCAGCAT+AGG | + | chr3.4:77007836-77007855 | None:intergenic | 55.0% | |
| CTCTGCTACCTTCACCGTCA+TGG | - | chr3.4:77007346-77007365 | MS.gene69737:CDS | 55.0% | |
| CTGCTTTCTCCTGCTCGTCT+TGG | - | chr3.4:77007839-77007858 | MS.gene69737:intron | 55.0% | |
| GCCAATGCCCGCCATGAATT+TGG | - | chr3.4:77007290-77007309 | MS.gene69737:CDS | 55.0% | |
| GCCTTCATGACCAAGCTCTC+CGG | + | chr3.4:77007399-77007418 | None:intergenic | 55.0% | |
| GCTGCCTATTGTACAGCCAG+TGG | - | chr3.4:77007500-77007519 | MS.gene69737:CDS | 55.0% | |
| GGATTACACCAGGGATGGTG+AGG | - | chr3.4:77009070-77009089 | MS.gene69737:CDS | 55.0% | |
| GGCTGAGATTGAGGACGGTT+GGG | + | chr3.4:77007451-77007470 | None:intergenic | 55.0% | |
| GGCTGTACAATAGGCAGCCT+CGG | + | chr3.4:77007498-77007517 | None:intergenic | 55.0% | |
| GGGATGGTGAGGATGTCAGT+TGG | - | chr3.4:77009081-77009100 | MS.gene69737:CDS | 55.0% | |
| GGGGCCAACAATGAACCCAA+AGG | - | chr3.4:77008684-77008703 | MS.gene69737:CDS | 55.0% | |
| GTCAGAGAGAATCCCACACC+TGG | - | chr3.4:77008720-77008739 | MS.gene69737:CDS | 55.0% | |
| GTTCTTTCATGCGAAGGCCC+AGG | + | chr3.4:77008741-77008760 | None:intergenic | 55.0% | |
| TCAAGGAGCCATGATGCTGC+TGG | - | chr3.4:77008663-77008682 | MS.gene69737:CDS | 55.0% | |
| TGCTGGGATTACACCAGGGA+TGG | - | chr3.4:77009065-77009084 | MS.gene69737:CDS | 55.0% | |
| ! | TGCTCGTCTTGGTGCAGATG+TGG | - | chr3.4:77007850-77007869 | MS.gene69737:intron | 55.0% |
| !! | AGAAATGGCGGACATGCCAC+TGG | + | chr3.4:77007519-77007538 | None:intergenic | 55.0% |
| !! | GCCAAATTCATGGCGGGCAT+TGG | + | chr3.4:77007294-77007313 | None:intergenic | 55.0% |
| AAGCCACAACATGTCCGCCG+TGG | + | chr3.4:77007565-77007584 | None:intergenic | 60.0% | |
| CGGCTGAGATTGAGGACGGT+TGG | + | chr3.4:77007452-77007471 | None:intergenic | 60.0% | |
| CTTCGAGGGCCGCCATCTTA+CGG | + | chr3.4:77007472-77007491 | None:intergenic | 60.0% | |
| GCCGGAGAGCTTGGTCATGA+AGG | - | chr3.4:77007395-77007414 | MS.gene69737:CDS | 60.0% | |
| GGAGCAGAAGTGGAGTCAGC+TGG | - | chr3.4:77009119-77009138 | MS.gene69737:CDS | 60.0% | |
| TCATGCGAAGGCCCAGGTGT+GGG | + | chr3.4:77008735-77008754 | None:intergenic | 60.0% | |
| TGTTGGCCCCAGCAGCATCA+TGG | + | chr3.4:77008674-77008693 | None:intergenic | 60.0% | |
| TTACAGCTCTGCAGCCACGG+CGG | - | chr3.4:77007548-77007567 | MS.gene69737:CDS | 60.0% | |
| TTCATGCGAAGGCCCAGGTG+TGG | + | chr3.4:77008736-77008755 | None:intergenic | 60.0% | |
| CAGCCACGGCGGACATGTTG+TGG | - | chr3.4:77007559-77007578 | MS.gene69737:CDS | 65.0% | |
| CATTGGCGAGTGCGGCCTCT+GGG | + | chr3.4:77007277-77007296 | None:intergenic | 65.0% | |
| ! | CGTAAGATGGCGGCCCTCGA+AGG | - | chr3.4:77007470-77007489 | MS.gene69737:CDS | 65.0% |
| !! | ATGGCGGGCATTGGCGAGTG+CGG | + | chr3.4:77007285-77007304 | None:intergenic | 65.0% |
| ! | GCATTGGCGAGTGCGGCCTC+TGG | + | chr3.4:77007278-77007297 | None:intergenic | 70.0% |
| !! | AGGCAGCCTCGGTGCCTTCG+AGG | + | chr3.4:77007487-77007506 | None:intergenic | 70.0% |
| !! | GGCAGCCTCGGTGCCTTCGA+GGG | + | chr3.4:77007486-77007505 | None:intergenic | 70.0% |
| !!! | GGCGGCCCTCGAAGGCACCG+AGG | - | chr3.4:77007478-77007497 | MS.gene69737:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 77007152 | 77009176 | 77007152 | ID=MS.gene69737 |
| chr3.4 | mRNA | 77007152 | 77009176 | 77007152 | ID=MS.gene69737.t1;Parent=MS.gene69737 |
| chr3.4 | exon | 77008405 | 77009176 | 77008405 | ID=MS.gene69737.t1.exon1;Parent=MS.gene69737.t1 |
| chr3.4 | CDS | 77008405 | 77009176 | 77008405 | ID=cds.MS.gene69737.t1;Parent=MS.gene69737.t1 |
| chr3.4 | exon | 77007152 | 77007711 | 77007152 | ID=MS.gene69737.t1.exon2;Parent=MS.gene69737.t1 |
| chr3.4 | CDS | 77007152 | 77007711 | 77007152 | ID=cds.MS.gene69737.t1;Parent=MS.gene69737.t1 |
| Gene Sequence |
| Protein sequence |
