Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69911.t1 | XP_013469004.1 | 87.9 | 315 | 38 | 0 | 4 | 318 | 9 | 323 | 2.00E-152 | 548.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69911.t1 | Q43317 | 72.7 | 315 | 86 | 0 | 4 | 318 | 10 | 324 | 2.4e-130 | 466.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69911.t1 | A0A072VN32 | 87.9 | 315 | 38 | 0 | 4 | 318 | 9 | 323 | 1.5e-152 | 548.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04933 | MS.gene69911 | 0.821459 | 3.99E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69911.t1 | MTR_1g081620 | 87.302 | 315 | 40 | 0 | 4 | 318 | 9 | 323 | 0.0 | 543 |
| MS.gene69911.t1 | MTR_1g081625 | 87.937 | 315 | 38 | 0 | 4 | 318 | 9 | 323 | 0.0 | 530 |
| MS.gene69911.t1 | MTR_1g081640 | 93.907 | 279 | 17 | 0 | 4 | 282 | 9 | 287 | 4.38e-175 | 487 |
| MS.gene69911.t1 | MTR_1g081610 | 72.063 | 315 | 88 | 0 | 4 | 318 | 10 | 324 | 1.50e-151 | 428 |
| MS.gene69911.t1 | MTR_5g006340 | 72.381 | 315 | 87 | 0 | 4 | 318 | 10 | 324 | 3.22e-151 | 427 |
| MS.gene69911.t1 | MTR_1g103690 | 71.111 | 315 | 91 | 0 | 4 | 318 | 10 | 324 | 9.80e-150 | 423 |
| MS.gene69911.t1 | MTR_4g087490 | 63.844 | 307 | 111 | 0 | 9 | 315 | 54 | 360 | 1.79e-145 | 414 |
| MS.gene69911.t1 | MTR_4g087510 | 60.656 | 305 | 112 | 1 | 11 | 315 | 55 | 351 | 1.06e-137 | 394 |
| MS.gene69911.t1 | MTR_7g078070 | 59.486 | 311 | 126 | 0 | 5 | 315 | 4 | 314 | 1.97e-133 | 382 |
| MS.gene69911.t1 | MTR_7g078070 | 58.974 | 312 | 128 | 0 | 4 | 315 | 63 | 374 | 7.88e-133 | 383 |
| MS.gene69911.t1 | MTR_7g078070 | 58.929 | 280 | 115 | 0 | 36 | 315 | 2 | 281 | 6.81e-120 | 346 |
| MS.gene69911.t1 | MTR_7g087110 | 59.609 | 307 | 114 | 1 | 9 | 315 | 72 | 368 | 2.25e-117 | 343 |
| MS.gene69911.t1 | MTR_4g087520 | 67.669 | 266 | 86 | 0 | 50 | 315 | 1 | 266 | 3.26e-115 | 334 |
| MS.gene69911.t1 | MTR_5g095670 | 30.460 | 348 | 183 | 6 | 11 | 301 | 53 | 398 | 7.20e-43 | 153 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69911.t1 | AT3G04940 | 71.383 | 311 | 89 | 0 | 5 | 315 | 11 | 321 | 8.06e-155 | 436 |
| MS.gene69911.t1 | AT3G04940 | 71.383 | 311 | 89 | 0 | 5 | 315 | 11 | 321 | 8.06e-155 | 436 |
| MS.gene69911.t1 | AT4G14880 | 69.524 | 315 | 96 | 0 | 4 | 318 | 7 | 321 | 1.15e-150 | 426 |
| MS.gene69911.t1 | AT4G14880 | 69.524 | 315 | 96 | 0 | 4 | 318 | 7 | 321 | 1.15e-150 | 426 |
| MS.gene69911.t1 | AT4G14880 | 69.524 | 315 | 96 | 0 | 4 | 318 | 7 | 321 | 1.15e-150 | 426 |
| MS.gene69911.t1 | AT4G14880 | 69.524 | 315 | 96 | 0 | 4 | 318 | 7 | 321 | 1.15e-150 | 426 |
| MS.gene69911.t1 | AT4G14880 | 69.524 | 315 | 96 | 0 | 4 | 318 | 7 | 321 | 1.15e-150 | 426 |
| MS.gene69911.t1 | AT2G43750 | 72.638 | 307 | 84 | 0 | 9 | 315 | 82 | 388 | 2.04e-150 | 428 |
| MS.gene69911.t1 | AT2G43750 | 72.638 | 307 | 84 | 0 | 9 | 315 | 82 | 388 | 2.04e-150 | 428 |
| MS.gene69911.t1 | AT3G59760 | 70.033 | 307 | 92 | 0 | 9 | 315 | 120 | 426 | 1.76e-145 | 417 |
| MS.gene69911.t1 | AT3G59760 | 70.033 | 307 | 92 | 0 | 9 | 315 | 120 | 426 | 1.82e-145 | 417 |
| MS.gene69911.t1 | AT5G28020 | 68.387 | 310 | 98 | 0 | 9 | 318 | 14 | 323 | 8.66e-142 | 403 |
| MS.gene69911.t1 | AT5G28020 | 68.387 | 310 | 98 | 0 | 9 | 318 | 14 | 323 | 8.66e-142 | 403 |
| MS.gene69911.t1 | AT5G28020 | 68.387 | 310 | 98 | 0 | 9 | 318 | 14 | 323 | 8.66e-142 | 403 |
| MS.gene69911.t1 | AT5G28020 | 68.387 | 310 | 98 | 0 | 9 | 318 | 14 | 323 | 8.66e-142 | 403 |
| MS.gene69911.t1 | AT5G28020 | 68.387 | 310 | 98 | 0 | 9 | 318 | 14 | 323 | 8.66e-142 | 403 |
| MS.gene69911.t1 | AT5G28030 | 68.710 | 310 | 97 | 0 | 9 | 318 | 14 | 323 | 3.79e-141 | 402 |
| MS.gene69911.t1 | AT5G28030 | 68.710 | 310 | 97 | 0 | 9 | 318 | 14 | 323 | 3.79e-141 | 402 |
| MS.gene69911.t1 | AT5G28030 | 68.710 | 310 | 97 | 0 | 9 | 318 | 14 | 323 | 3.79e-141 | 402 |
| MS.gene69911.t1 | AT5G28030 | 68.710 | 310 | 97 | 0 | 9 | 318 | 14 | 323 | 3.79e-141 | 402 |
| MS.gene69911.t1 | AT3G59760 | 69.504 | 282 | 86 | 0 | 9 | 290 | 120 | 401 | 3.66e-129 | 375 |
| MS.gene69911.t1 | AT3G61440 | 57.051 | 312 | 134 | 0 | 4 | 315 | 51 | 362 | 1.85e-128 | 371 |
| MS.gene69911.t1 | AT3G22460 | 65.799 | 269 | 72 | 1 | 50 | 318 | 1 | 249 | 8.67e-122 | 350 |
| MS.gene69911.t1 | AT3G03630 | 58.900 | 309 | 117 | 1 | 9 | 317 | 106 | 404 | 2.55e-116 | 342 |
| MS.gene69911.t1 | AT5G28030 | 68.354 | 237 | 75 | 0 | 9 | 245 | 14 | 250 | 6.21e-109 | 318 |
| MS.gene69911.t1 | AT3G61440 | 57.895 | 266 | 112 | 0 | 50 | 315 | 1 | 266 | 4.90e-108 | 316 |
| MS.gene69911.t1 | AT3G61440 | 54.962 | 262 | 118 | 0 | 4 | 265 | 51 | 312 | 4.14e-103 | 305 |
| MS.gene69911.t1 | AT5G28020 | 67.089 | 237 | 78 | 0 | 82 | 318 | 1 | 237 | 1.87e-98 | 290 |
| MS.gene69911.t1 | AT3G61440 | 57.917 | 240 | 101 | 0 | 76 | 315 | 2 | 241 | 5.95e-97 | 286 |
| MS.gene69911.t1 | AT3G22460 | 65.363 | 179 | 62 | 0 | 4 | 182 | 10 | 188 | 3.14e-85 | 254 |
| MS.gene69911.t1 | AT1G55880 | 29.915 | 351 | 186 | 7 | 11 | 303 | 49 | 397 | 3.93e-41 | 148 |
| MS.gene69911.t1 | AT1G55880 | 33.884 | 242 | 118 | 5 | 11 | 211 | 49 | 289 | 3.35e-35 | 130 |
Find 69 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGTGTCTCTCCAAATTTC+AGG | 0.120422 | 1.4:-66110911 | None:intergenic |
| AGACCACTGGCCCTGAAATT+TGG | 0.229438 | 1.4:+66110900 | MS.gene69911:CDS |
| TGCTTTGAAAGAAGGTTTAC+TGG | 0.278057 | 1.4:+66111986 | MS.gene69911:CDS |
| AAAATTATACTGCGCGCTTT+TGG | 0.298176 | 1.4:+66110662 | MS.gene69911:CDS |
| TTGGTTGCAGGGATAGGAAC+TGG | 0.301174 | 1.4:+66110950 | MS.gene69911:CDS |
| TCTCCTAGATGAAGTTATTC+AGG | 0.311315 | 1.4:+66111408 | MS.gene69911:CDS |
| AGAATTGATGCTTTGGTTGC+AGG | 0.319930 | 1.4:+66110938 | MS.gene69911:CDS |
| TGATTGAGCATATAGCTATT+AGG | 0.338381 | 1.4:-66110764 | None:intergenic |
| ATTGAAGATGCCGAAAATAA+TGG | 0.348920 | 1.4:+66109876 | MS.gene69911:CDS |
| TAATCAGTAATTACCTTTCC+AGG | 0.365883 | 1.4:-66109909 | None:intergenic |
| CTCTCAAGACTCACAAAAGA+TGG | 0.404289 | 1.4:-66110638 | None:intergenic |
| TTGCAGATGGGAATTTCATC+AGG | 0.417954 | 1.4:+66112271 | MS.gene69911:intron |
| TGGAGGGAGAATTGATGCTT+TGG | 0.420775 | 1.4:+66110931 | MS.gene69911:CDS |
| TTGTTCAGCTTCATGCCTGA+TGG | 0.429194 | 1.4:-66112533 | None:intergenic |
| GACCCTGCCAAAGGAGTTGA+TGG | 0.430929 | 1.4:+66110704 | MS.gene69911:CDS |
| CAGTACCGATCCCTTGGATT+AGG | 0.432171 | 1.4:-66111357 | None:intergenic |
| AAGCTGCTTGCTTTGAAAGA+AGG | 0.434359 | 1.4:+66111978 | MS.gene69911:CDS |
| CTTGCTGCAGTGTCAAAGAT+AGG | 0.444641 | 1.4:+66109728 | MS.gene69911:CDS |
| GAAAGTACCTTTGGATTGAC+AGG | 0.453598 | 1.4:-66110797 | None:intergenic |
| GAATTGATGCTTTGGTTGCA+GGG | 0.460383 | 1.4:+66110939 | MS.gene69911:CDS |
| CGACACCAGTACCGATCCCT+TGG | 0.468770 | 1.4:-66111363 | None:intergenic |
| GCAGCAGCAGCAATAAAACT+AGG | 0.476121 | 1.4:+66112301 | MS.gene69911:CDS |
| TTCAAAATTGCACTTTCAGT+TGG | 0.477799 | 1.4:-66111160 | None:intergenic |
| ACTCCATCAACTCCTTTGGC+AGG | 0.479455 | 1.4:-66110707 | None:intergenic |
| GGAGAGAAACTTAGATATCA+AGG | 0.483692 | 1.4:+66111006 | MS.gene69911:CDS |
| TGGTTGCAGGGATAGGAACT+GGG | 0.484341 | 1.4:+66110951 | MS.gene69911:CDS |
| AATAATGGCTTCATTACTCC+TGG | 0.484664 | 1.4:+66109891 | MS.gene69911:CDS |
| CATCTAGGAGATCAAGATCC+AGG | 0.490366 | 1.4:-66111396 | None:intergenic |
| CAGTGTCTCTCCAAATTTCA+GGG | 0.492933 | 1.4:-66110910 | None:intergenic |
| CTACCTGAATAACTTCATCT+AGG | 0.495279 | 1.4:-66111411 | None:intergenic |
| CTAATCCAAGGGATCGGTAC+TGG | 0.496016 | 1.4:+66111358 | MS.gene69911:CDS |
| GATGCTTTGGTTGCAGGGAT+AGG | 0.501960 | 1.4:+66110944 | MS.gene69911:CDS |
| AAGTAACGCTCTCCAAAACT+AGG | 0.515786 | 1.4:-66112490 | None:intergenic |
| TGGCAACACCGGCATAGGAT+TGG | 0.524136 | 1.4:+66110571 | MS.gene69911:CDS |
| TATAAAGTCTGTTCTTGTTG+AGG | 0.528812 | 1.4:+66110541 | MS.gene69911:intron |
| TAGACTCATTATGAGACCAC+TGG | 0.531764 | 1.4:+66110887 | MS.gene69911:intron |
| AGGAGATCAAGATCCAGGAC+AGG | 0.551186 | 1.4:-66111391 | None:intergenic |
| TATCTAAACAACATTACAGA+AGG | 0.556044 | 1.4:+66109664 | MS.gene69911:CDS |
| GTTCTTGTTGAGGCTACTAG+TGG | 0.560847 | 1.4:+66110551 | MS.gene69911:CDS |
| GGGAAGAGACAAGAAAATGC+AGG | 0.574537 | 1.4:+66112322 | MS.gene69911:CDS |
| AAAGGCAAACACCTAATCCA+AGG | 0.576831 | 1.4:+66111346 | MS.gene69911:intron |
| TCTCCAAATTTCAGGGCCAG+TGG | 0.578326 | 1.4:-66110903 | None:intergenic |
| ACTAGTGGCAACACCGGCAT+AGG | 0.581041 | 1.4:+66110566 | MS.gene69911:CDS |
| CAGCAGCAGCAATAAAACTA+GGG | 0.582566 | 1.4:+66112302 | MS.gene69911:CDS |
| TATCTAAGTTTCTCTCCTTG+AGG | 0.585770 | 1.4:-66111000 | None:intergenic |
| TGGCTTCATTACTCCTGGAA+AGG | 0.588930 | 1.4:+66109896 | MS.gene69911:CDS |
| CTCCATCAACTCCTTTGGCA+GGG | 0.596937 | 1.4:-66110706 | None:intergenic |
| GTTAACAGGGAACACACCAT+TGG | 0.598353 | 1.4:+66109639 | MS.gene69911:intron |
| AAGACTCACAAAAGATGGCA+TGG | 0.600009 | 1.4:-66110633 | None:intergenic |
| CCTGAAATTTGGAGAGACAC+TGG | 0.603528 | 1.4:+66110911 | MS.gene69911:CDS |
| TGAAAATCCTGTCAATCCAA+AGG | 0.608161 | 1.4:+66110790 | MS.gene69911:CDS |
| GATCGATGCCAATCCTATGC+CGG | 0.608438 | 1.4:-66110579 | None:intergenic |
| GGGGAACAATAACAGGTGCT+GGG | 0.617812 | 1.4:+66110972 | MS.gene69911:CDS |
| GGAGATCAAGATCCAGGACA+GGG | 0.624998 | 1.4:-66111390 | None:intergenic |
| AGGGTCTGTCAGATATACCT+CGG | 0.637839 | 1.4:-66110687 | None:intergenic |
| GAGGCTACTAGTGGCAACAC+CGG | 0.641800 | 1.4:+66110560 | MS.gene69911:CDS |
| AAGGCAAACACCTAATCCAA+GGG | 0.643306 | 1.4:+66111347 | MS.gene69911:intron |
| AAACACCTAATCCAAGGGAT+CGG | 0.651827 | 1.4:+66111352 | MS.gene69911:CDS |
| GAAATTTGGAGAGACACTGG+AGG | 0.657808 | 1.4:+66110914 | MS.gene69911:CDS |
| AGATCAAGATCCAGGACAGG+GGG | 0.659611 | 1.4:-66111388 | None:intergenic |
| TATCTGACAGACCCTGCCAA+AGG | 0.659992 | 1.4:+66110695 | MS.gene69911:CDS |
| AGGTGCTGGGAAGTTCCTCA+AGG | 0.662577 | 1.4:+66110985 | MS.gene69911:CDS |
| ATCTAAACAACATTACAGAA+GGG | 0.663527 | 1.4:+66109665 | MS.gene69911:CDS |
| GGTTGCAGGGATAGGAACTG+GGG | 0.673121 | 1.4:+66110952 | MS.gene69911:CDS |
| GCATCGATCGCAGCACTGAG+AGG | 0.674732 | 1.4:+66110593 | MS.gene69911:CDS |
| GAGATCAAGATCCAGGACAG+GGG | 0.676210 | 1.4:-66111389 | None:intergenic |
| AAATTTGGAGAGACACTGGA+GGG | 0.678031 | 1.4:+66110915 | MS.gene69911:CDS |
| ATGTTGTTTAGATATACCAA+TGG | 0.681506 | 1.4:-66109655 | None:intergenic |
| GTTGCAGGGATAGGAACTGG+GGG | 0.729118 | 1.4:+66110953 | MS.gene69911:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAAAAACTTATATCAT+AGG | - | chr1.4:66109998-66110017 | None:intergenic | 10.0% |
| !!! | ACTATTTTTAGAAAAAAATT+GGG | - | chr1.4:66111583-66111602 | None:intergenic | 10.0% |
| !!! | TTAATATTATTTGAGTTTAA+TGG | + | chr1.4:66112105-66112124 | MS.gene69911:intron | 10.0% |
| !! | AATGATAAGATAAATATCTT+CGG | - | chr1.4:66111606-66111625 | None:intergenic | 15.0% |
| !! | ATCATTACAAATTCTTAATT+AGG | - | chr1.4:66109819-66109838 | None:intergenic | 15.0% |
| !! | TGAAAAATTCAATCAATAAA+TGG | - | chr1.4:66111312-66111331 | None:intergenic | 15.0% |
| !! | TTTCTCATTATCATTATATA+CGG | - | chr1.4:66110325-66110344 | None:intergenic | 15.0% |
| !!! | AATAATTTGTTAAAAGAAGA+TGG | + | chr1.4:66111445-66111464 | MS.gene69911:intron | 15.0% |
| !!! | AGTTTAATCTTTTTAAACAA+TGG | + | chr1.4:66110515-66110534 | MS.gene69911:intron | 15.0% |
| !!! | CTATTTTTAGAAAAAAATTG+GGG | - | chr1.4:66111582-66111601 | None:intergenic | 15.0% |
| !!! | GACTATTTTTAGAAAAAAAT+TGG | - | chr1.4:66111584-66111603 | None:intergenic | 15.0% |
| !!! | TAAAATTTTTATAGTGACAA+TGG | - | chr1.4:66112144-66112163 | None:intergenic | 15.0% |
| !! | ATAGCATATCATGATAAAAA+CGG | + | chr1.4:66110198-66110217 | MS.gene69911:intron | 20.0% |
| !! | CTTTCATTCTTAAAAAGTTA+TGG | + | chr1.4:66111846-66111865 | MS.gene69911:intron | 20.0% |
| !! | TTAAAAGAGTCAATAAAAAG+CGG | - | chr1.4:66110070-66110089 | None:intergenic | 20.0% |
| !! | TTAATTCTTCCTTACAAAAT+CGG | + | chr1.4:66110022-66110041 | MS.gene69911:intron | 20.0% |
| !! | TTAGATAACAAATAACTGAA+GGG | - | chr1.4:66112061-66112080 | None:intergenic | 20.0% |
| !! | TTTAGATAACAAATAACTGA+AGG | - | chr1.4:66112062-66112081 | None:intergenic | 20.0% |
| !!! | TTTTAATTGTGAAGTTAACA+GGG | + | chr1.4:66109626-66109645 | MS.gene69911:intron | 20.0% |
| !!! | TTTTTAATTGTGAAGTTAAC+AGG | + | chr1.4:66109625-66109644 | MS.gene69911:intron | 20.0% |
| ! | AATACTAGCTACAAATACAA+GGG | + | chr1.4:66111889-66111908 | MS.gene69911:intron | 25.0% |
| ! | ATAGTTCATATTGCCTAATT+TGG | + | chr1.4:66110820-66110839 | MS.gene69911:intron | 25.0% |
| ! | ATATAGTATTGTTCATGTTG+TGG | + | chr1.4:66110475-66110494 | MS.gene69911:intron | 25.0% |
| ! | ATCATAATCATAGTATACGT+TGG | + | chr1.4:66110224-66110243 | MS.gene69911:intron | 25.0% |
| ! | ATCTAAACAACATTACAGAA+GGG | + | chr1.4:66109665-66109684 | MS.gene69911:CDS | 25.0% |
| ! | TAATACTAGCTACAAATACA+AGG | + | chr1.4:66111888-66111907 | MS.gene69911:intron | 25.0% |
| ! | TATCTAAACAACATTACAGA+AGG | + | chr1.4:66109664-66109683 | MS.gene69911:CDS | 25.0% |
| ! | TCTAAAAGAAGATGGTAAAA+CGG | + | chr1.4:66111519-66111538 | MS.gene69911:intron | 25.0% |
| ! | TGACTTTACTATTAGATTAG+AGG | - | chr1.4:66110142-66110161 | None:intergenic | 25.0% |
| ! | TGTCTCTCTTAATTAATCAT+CGG | + | chr1.4:66110396-66110415 | MS.gene69911:intron | 25.0% |
| ! | TTCATTTGCACAAATTTCAA+AGG | + | chr1.4:66111328-66111347 | MS.gene69911:intron | 25.0% |
| ! | TTTACTATTAGATTAGAGGT+CGG | - | chr1.4:66110138-66110157 | None:intergenic | 25.0% |
| ! | TTTATGCAACTATATACTGT+TGG | - | chr1.4:66110293-66110312 | None:intergenic | 25.0% |
| !! | AGTAATGAAGCCATTATTTT+CGG | - | chr1.4:66109889-66109908 | None:intergenic | 25.0% |
| !! | ATGTTGTTTAGATATACCAA+TGG | - | chr1.4:66109658-66109677 | None:intergenic | 25.0% |
| !! | ATTAGTCAAGTTTGATAACT+AGG | + | chr1.4:66109928-66109947 | MS.gene69911:intron | 25.0% |
| !! | TAACTTGTGATTCTTGTTAT+TGG | + | chr1.4:66112021-66112040 | MS.gene69911:intron | 25.0% |
| !!! | ACCATCTTCTTTTAGAAAAT+TGG | - | chr1.4:66111515-66111534 | None:intergenic | 25.0% |
| !!! | TCCAATTTTCTAAAAGAAGA+TGG | + | chr1.4:66111511-66111530 | MS.gene69911:intron | 25.0% |
| ACGTTATGGTGAGATATAAT+TGG | - | chr1.4:66112176-66112195 | None:intergenic | 30.0% | |
| AGTAACATAAAGTGACGTTA+TGG | - | chr1.4:66112190-66112209 | None:intergenic | 30.0% | |
| ATATTTCCAAATTGTTGTGC+AGG | + | chr1.4:66112459-66112478 | MS.gene69911:intron | 30.0% | |
| ATTGAAGATGCCGAAAATAA+TGG | + | chr1.4:66109876-66109895 | MS.gene69911:CDS | 30.0% | |
| TAATCAGTAATTACCTTTCC+AGG | - | chr1.4:66109912-66109931 | None:intergenic | 30.0% | |
| TATAAAGTCTGTTCTTGTTG+AGG | + | chr1.4:66110541-66110560 | MS.gene69911:intron | 30.0% | |
| TATTGCCTAATTTGGTTGAT+AGG | + | chr1.4:66110828-66110847 | MS.gene69911:intron | 30.0% | |
| TGATTGAGCATATAGCTATT+AGG | - | chr1.4:66110767-66110786 | None:intergenic | 30.0% | |
| TTCAAAATTGCACTTTCAGT+TGG | - | chr1.4:66111163-66111182 | None:intergenic | 30.0% | |
| TTCAACCTATCAACCAAATT+AGG | - | chr1.4:66110836-66110855 | None:intergenic | 30.0% | |
| TTCAGAATAGTAAAATCACC+TGG | - | chr1.4:66111196-66111215 | None:intergenic | 30.0% | |
| ! | TGAGTTTAATGGATATGCAT+CGG | + | chr1.4:66112116-66112135 | MS.gene69911:intron | 30.0% |
| !! | ACCTTGTATACTTTTTGTGT+TGG | + | chr1.4:66111040-66111059 | MS.gene69911:intron | 30.0% |
| !! | ACTGAAAGTGCAATTTTGAA+TGG | + | chr1.4:66111163-66111182 | MS.gene69911:CDS | 30.0% |
| !! | AGTTTTTAGACAACAACTTG+AGG | + | chr1.4:66111286-66111305 | MS.gene69911:intron | 30.0% |
| !! | ATGAACTATGAAAGTACCTT+TGG | - | chr1.4:66110809-66110828 | None:intergenic | 30.0% |
| !! | CCTTGTATACTTTTTGTGTT+GGG | + | chr1.4:66111041-66111060 | MS.gene69911:intron | 30.0% |
| !! | CTTACAAGTTTTATGAGTCT+AGG | - | chr1.4:66109961-66109980 | None:intergenic | 30.0% |
| !! | TTTGTTTTCAATGTGAGACT+TGG | + | chr1.4:66110097-66110116 | MS.gene69911:intron | 30.0% |
| !!! | AGAGCTGTTTTTGAATTGTA+AGG | + | chr1.4:66109783-66109802 | MS.gene69911:intron | 30.0% |
| !!! | AGTTGATGGAGTTTTTGAAA+AGG | + | chr1.4:66110718-66110737 | MS.gene69911:CDS | 30.0% |
| !!! | TAATCTTGTTTTTCTCACTC+AGG | + | chr1.4:66109838-66109857 | MS.gene69911:intron | 30.0% |
| AAAAACTCCATCAACTCCTT+TGG | - | chr1.4:66110714-66110733 | None:intergenic | 35.0% | |
| AATAATGGCTTCATTACTCC+TGG | + | chr1.4:66109891-66109910 | MS.gene69911:CDS | 35.0% | |
| CTACCTGAATAACTTCATCT+AGG | - | chr1.4:66111414-66111433 | None:intergenic | 35.0% | |
| GGAGAGAAACTTAGATATCA+AGG | + | chr1.4:66111006-66111025 | MS.gene69911:CDS | 35.0% | |
| TATAATATATGTGCGTGACC+TGG | - | chr1.4:66111780-66111799 | None:intergenic | 35.0% | |
| TATAGTTCGCAAAACCTTGT+TGG | - | chr1.4:66111927-66111946 | None:intergenic | 35.0% | |
| TATCTAAGTTTCTCTCCTTG+AGG | - | chr1.4:66111003-66111022 | None:intergenic | 35.0% | |
| TCTCCTAGATGAAGTTATTC+AGG | + | chr1.4:66111408-66111427 | MS.gene69911:CDS | 35.0% | |
| TGAAAATCCTGTCAATCCAA+AGG | + | chr1.4:66110790-66110809 | MS.gene69911:CDS | 35.0% | |
| TGCGTCGAATAAACATACTA+AGG | - | chr1.4:66112374-66112393 | None:intergenic | 35.0% | |
| TTGAGTTCAATAGTGACATG+AGG | + | chr1.4:66111807-66111826 | MS.gene69911:intron | 35.0% | |
| ! | AAAATTATACTGCGCGCTTT+TGG | + | chr1.4:66110662-66110681 | MS.gene69911:CDS | 35.0% |
| ! | AACAAGGTTTTGCGAACTAT+AGG | + | chr1.4:66111926-66111945 | MS.gene69911:intron | 35.0% |
| ! | AGTTTAATGGATATGCATCG+GGG | + | chr1.4:66112118-66112137 | MS.gene69911:intron | 35.0% |
| ! | ATGTGAATGTCTTTTGCAGA+TGG | + | chr1.4:66112258-66112277 | MS.gene69911:intron | 35.0% |
| ! | CCCAACACAAAAAGTATACA+AGG | - | chr1.4:66111044-66111063 | None:intergenic | 35.0% |
| ! | GACAAAGCTTTGTCAAGATT+TGG | - | chr1.4:66111754-66111773 | None:intergenic | 35.0% |
| ! | GAGTTTAATGGATATGCATC+GGG | + | chr1.4:66112117-66112136 | MS.gene69911:intron | 35.0% |
| ! | TGTGAATGTCTTTTGCAGAT+GGG | + | chr1.4:66112259-66112278 | MS.gene69911:intron | 35.0% |
| !! | GAAAGTGCAATTTTGAATGG+AGG | + | chr1.4:66111166-66111185 | MS.gene69911:CDS | 35.0% |
| !! | TGCTTTGAAAGAAGGTTTAC+TGG | + | chr1.4:66111986-66112005 | MS.gene69911:CDS | 35.0% |
| !!! | CAATACTTTTTGAGTCCATC+AGG | + | chr1.4:66112518-66112537 | MS.gene69911:CDS | 35.0% |
| AAAATCGGCCGATAAAGTAG+AGG | + | chr1.4:66110037-66110056 | MS.gene69911:intron | 40.0% | |
| AAACACCTAATCCAAGGGAT+CGG | + | chr1.4:66111352-66111371 | MS.gene69911:CDS | 40.0% | |
| AAACCACCTGCACAACAATT+TGG | - | chr1.4:66112468-66112487 | None:intergenic | 40.0% | |
| AAAGGCAAACACCTAATCCA+AGG | + | chr1.4:66111346-66111365 | MS.gene69911:intron | 40.0% | |
| AAATTTGGAGAGACACTGGA+GGG | + | chr1.4:66110915-66110934 | MS.gene69911:CDS | 40.0% | |
| AAGACTCACAAAAGATGGCA+TGG | - | chr1.4:66110636-66110655 | None:intergenic | 40.0% | |
| AAGGCAAACACCTAATCCAA+GGG | + | chr1.4:66111347-66111366 | MS.gene69911:intron | 40.0% | |
| AAGTAACGCTCTCCAAAACT+AGG | - | chr1.4:66112493-66112512 | None:intergenic | 40.0% | |
| AGAATTGATGCTTTGGTTGC+AGG | + | chr1.4:66110938-66110957 | MS.gene69911:CDS | 40.0% | |
| CAGCAGCAGCAATAAAACTA+GGG | + | chr1.4:66112302-66112321 | MS.gene69911:CDS | 40.0% | |
| CAGTGTCTCTCCAAATTTCA+GGG | - | chr1.4:66110913-66110932 | None:intergenic | 40.0% | |
| CTCTCAAGACTCACAAAAGA+TGG | - | chr1.4:66110641-66110660 | None:intergenic | 40.0% | |
| CTTCTTTCTCAAGCCTCAAT+GGG | + | chr1.4:66110434-66110453 | MS.gene69911:intron | 40.0% | |
| GAATTGATGCTTTGGTTGCA+GGG | + | chr1.4:66110939-66110958 | MS.gene69911:CDS | 40.0% | |
| GACACATTGAGCATGAAAGT+TGG | + | chr1.4:66111626-66111645 | MS.gene69911:intron | 40.0% | |
| TAGACTCATTATGAGACCAC+TGG | + | chr1.4:66110887-66110906 | MS.gene69911:intron | 40.0% | |
| TATCATATGCCTACCCATTG+AGG | - | chr1.4:66110450-66110469 | None:intergenic | 40.0% | |
| TGCAGTGTCAAAGATAGGTA+TGG | + | chr1.4:66109733-66109752 | MS.gene69911:intron | 40.0% | |
| TTGCAGATGGGAATTTCATC+AGG | + | chr1.4:66112271-66112290 | MS.gene69911:intron | 40.0% | |
| TTTCCAAATTGTTGTGCAGG+TGG | + | chr1.4:66112462-66112481 | MS.gene69911:intron | 40.0% | |
| ! | ATTTTGAATGGAGGAAAGCC+AGG | + | chr1.4:66111175-66111194 | MS.gene69911:CDS | 40.0% |
| ! | CAGGTGGTTTTTCCTAGTTT+TGG | + | chr1.4:66112478-66112497 | MS.gene69911:intron | 40.0% |
| !! | AAGCTGCTTGCTTTGAAAGA+AGG | + | chr1.4:66111978-66111997 | MS.gene69911:CDS | 40.0% |
| !! | CTTTATCGGCCGATTTTGTA+AGG | - | chr1.4:66110034-66110053 | None:intergenic | 40.0% |
| !! | GAAAGTACCTTTGGATTGAC+AGG | - | chr1.4:66110800-66110819 | None:intergenic | 40.0% |
| !!! | GGATTCTGTTTTGACCAACA+AGG | + | chr1.4:66111910-66111929 | MS.gene69911:intron | 40.0% |
| AGATTAGAGGTCGGAGTAGT+GGG | - | chr1.4:66110129-66110148 | None:intergenic | 45.0% | |
| AGGGTCTGTCAGATATACCT+CGG | - | chr1.4:66110690-66110709 | None:intergenic | 45.0% | |
| CATCTAGGAGATCAAGATCC+AGG | - | chr1.4:66111399-66111418 | None:intergenic | 45.0% | |
| CCAGTGTCTCTCCAAATTTC+AGG | - | chr1.4:66110914-66110933 | None:intergenic | 45.0% | |
| CCATTGAGGCTTGAGAAAGA+AGG | - | chr1.4:66110436-66110455 | None:intergenic | 45.0% | |
| CCTGAAATTTGGAGAGACAC+TGG | + | chr1.4:66110911-66110930 | MS.gene69911:CDS | 45.0% | |
| CCTTCTTTCTCAAGCCTCAA+TGG | + | chr1.4:66110433-66110452 | MS.gene69911:intron | 45.0% | |
| CTATGTAAATTTCCCCCCCT+AGG | + | chr1.4:66111123-66111142 | MS.gene69911:intron | 45.0% | |
| CTTGCTGCAGTGTCAAAGAT+AGG | + | chr1.4:66109728-66109747 | MS.gene69911:CDS | 45.0% | |
| GAAATTTGGAGAGACACTGG+AGG | + | chr1.4:66110914-66110933 | MS.gene69911:CDS | 45.0% | |
| GCACCCATCCTCTACTTTAT+CGG | - | chr1.4:66110048-66110067 | None:intergenic | 45.0% | |
| GCAGCAGCAGCAATAAAACT+AGG | + | chr1.4:66112301-66112320 | MS.gene69911:CDS | 45.0% | |
| GGGAAGAGACAAGAAAATGC+AGG | + | chr1.4:66112322-66112341 | MS.gene69911:CDS | 45.0% | |
| GGTTCTACACCATACACCTA+GGG | - | chr1.4:66111142-66111161 | None:intergenic | 45.0% | |
| GTTAACAGGGAACACACCAT+TGG | + | chr1.4:66109639-66109658 | MS.gene69911:intron | 45.0% | |
| GTTCTACACCATACACCTAG+GGG | - | chr1.4:66111141-66111160 | None:intergenic | 45.0% | |
| GTTCTTGTTGAGGCTACTAG+TGG | + | chr1.4:66110551-66110570 | MS.gene69911:CDS | 45.0% | |
| TAGATTAGAGGTCGGAGTAG+TGG | - | chr1.4:66110130-66110149 | None:intergenic | 45.0% | |
| TGAGGCTTGAGAAAGAAGGA+TGG | - | chr1.4:66110432-66110451 | None:intergenic | 45.0% | |
| TGGAGGGAGAATTGATGCTT+TGG | + | chr1.4:66110931-66110950 | MS.gene69911:CDS | 45.0% | |
| TGGCTTCATTACTCCTGGAA+AGG | + | chr1.4:66109896-66109915 | MS.gene69911:CDS | 45.0% | |
| TTCTACACCATACACCTAGG+GGG | - | chr1.4:66111140-66111159 | None:intergenic | 45.0% | |
| TTGTTCAGCTTCATGCCTGA+TGG | - | chr1.4:66112536-66112555 | None:intergenic | 45.0% | |
| TTTCTCAAGCCTCAATGGGT+AGG | + | chr1.4:66110438-66110457 | MS.gene69911:intron | 45.0% | |
| ! | TGACAAAGCTTTGTCTCACC+AGG | + | chr1.4:66111759-66111778 | MS.gene69911:intron | 45.0% |
| ! | TGGTTCTACACCATACACCT+AGG | - | chr1.4:66111143-66111162 | None:intergenic | 45.0% |
| AATTTCCCCCCCTAGGTGTA+TGG | + | chr1.4:66111130-66111149 | MS.gene69911:intron | 50.0% | |
| ACTCCATCAACTCCTTTGGC+AGG | - | chr1.4:66110710-66110729 | None:intergenic | 50.0% | |
| AGACCACTGGCCCTGAAATT+TGG | + | chr1.4:66110900-66110919 | MS.gene69911:CDS | 50.0% | |
| AGATCAAGATCCAGGACAGG+GGG | - | chr1.4:66111391-66111410 | None:intergenic | 50.0% | |
| AGGAGATCAAGATCCAGGAC+AGG | - | chr1.4:66111394-66111413 | None:intergenic | 50.0% | |
| CGGCCGATAAAGTAGAGGAT+GGG | + | chr1.4:66110042-66110061 | MS.gene69911:intron | 50.0% | |
| CTAATCCAAGGGATCGGTAC+TGG | + | chr1.4:66111358-66111377 | MS.gene69911:CDS | 50.0% | |
| CTCCATCAACTCCTTTGGCA+GGG | - | chr1.4:66110709-66110728 | None:intergenic | 50.0% | |
| GAGATCAAGATCCAGGACAG+GGG | - | chr1.4:66111392-66111411 | None:intergenic | 50.0% | |
| GATCGATGCCAATCCTATGC+CGG | - | chr1.4:66110582-66110601 | None:intergenic | 50.0% | |
| GATGCTTTGGTTGCAGGGAT+AGG | + | chr1.4:66110944-66110963 | MS.gene69911:CDS | 50.0% | |
| GGAACTGGGGGAACAATAAC+AGG | + | chr1.4:66110965-66110984 | MS.gene69911:CDS | 50.0% | |
| GGAGATCAAGATCCAGGACA+GGG | - | chr1.4:66111393-66111412 | None:intergenic | 50.0% | |
| GGGGAACAATAACAGGTGCT+GGG | + | chr1.4:66110972-66110991 | MS.gene69911:CDS | 50.0% | |
| TATCTGACAGACCCTGCCAA+AGG | + | chr1.4:66110695-66110714 | MS.gene69911:CDS | 50.0% | |
| TCGGCCGATAAAGTAGAGGA+TGG | + | chr1.4:66110041-66110060 | MS.gene69911:intron | 50.0% | |
| TCTACACCATACACCTAGGG+GGG | - | chr1.4:66111139-66111158 | None:intergenic | 50.0% | |
| TCTCCAAATTTCAGGGCCAG+TGG | - | chr1.4:66110906-66110925 | None:intergenic | 50.0% | |
| TGGTTGCAGGGATAGGAACT+GGG | + | chr1.4:66110951-66110970 | MS.gene69911:CDS | 50.0% | |
| TTGGTTGCAGGGATAGGAAC+TGG | + | chr1.4:66110950-66110969 | MS.gene69911:CDS | 50.0% | |
| !! | CAGTACCGATCCCTTGGATT+AGG | - | chr1.4:66111360-66111379 | None:intergenic | 50.0% |
| ACTAGTGGCAACACCGGCAT+AGG | + | chr1.4:66110566-66110585 | MS.gene69911:CDS | 55.0% | |
| CTACACCATACACCTAGGGG+GGG | - | chr1.4:66111138-66111157 | None:intergenic | 55.0% | |
| GACCCTGCCAAAGGAGTTGA+TGG | + | chr1.4:66110704-66110723 | MS.gene69911:CDS | 55.0% | |
| GAGGCTACTAGTGGCAACAC+CGG | + | chr1.4:66110560-66110579 | MS.gene69911:CDS | 55.0% | |
| GGGGGAACAATAACAGGTGC+TGG | + | chr1.4:66110971-66110990 | MS.gene69911:CDS | 55.0% | |
| GGTTGCAGGGATAGGAACTG+GGG | + | chr1.4:66110952-66110971 | MS.gene69911:CDS | 55.0% | |
| GTTGCAGGGATAGGAACTGG+GGG | + | chr1.4:66110953-66110972 | MS.gene69911:CDS | 55.0% | |
| TGGCAACACCGGCATAGGAT+TGG | + | chr1.4:66110571-66110590 | MS.gene69911:CDS | 55.0% | |
| !! | AGGTGCTGGGAAGTTCCTCA+AGG | + | chr1.4:66110985-66111004 | MS.gene69911:CDS | 55.0% |
| ! | GCATCGATCGCAGCACTGAG+AGG | + | chr1.4:66110593-66110612 | MS.gene69911:CDS | 60.0% |
| !! | CGACACCAGTACCGATCCCT+TGG | - | chr1.4:66111366-66111385 | None:intergenic | 60.0% |
| !! | TGGTGTCGTTCCCCCTGTCC+TGG | + | chr1.4:66111378-66111397 | MS.gene69911:CDS | 65.0% |
| !!! | ACTGCGCGCTTTTGGAGCCG+AGG | + | chr1.4:66110670-66110689 | MS.gene69911:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 66109529 | 66112570 | 66109529 | ID=MS.gene69911 |
| chr1.4 | mRNA | 66109529 | 66112570 | 66109529 | ID=MS.gene69911.t1;Parent=MS.gene69911 |
| chr1.4 | exon | 66109529 | 66109552 | 66109529 | ID=MS.gene69911.t1.exon1;Parent=MS.gene69911.t1 |
| chr1.4 | CDS | 66109529 | 66109552 | 66109529 | ID=cds.MS.gene69911.t1;Parent=MS.gene69911.t1 |
| chr1.4 | exon | 66109640 | 66109749 | 66109640 | ID=MS.gene69911.t1.exon2;Parent=MS.gene69911.t1 |
| chr1.4 | CDS | 66109640 | 66109749 | 66109640 | ID=cds.MS.gene69911.t1;Parent=MS.gene69911.t1 |
| chr1.4 | exon | 66109860 | 66109917 | 66109860 | ID=MS.gene69911.t1.exon3;Parent=MS.gene69911.t1 |
| chr1.4 | CDS | 66109860 | 66109917 | 66109860 | ID=cds.MS.gene69911.t1;Parent=MS.gene69911.t1 |
| chr1.4 | exon | 66110548 | 66110811 | 66110548 | ID=MS.gene69911.t1.exon4;Parent=MS.gene69911.t1 |
| chr1.4 | CDS | 66110548 | 66110811 | 66110548 | ID=cds.MS.gene69911.t1;Parent=MS.gene69911.t1 |
| chr1.4 | exon | 66110890 | 66111027 | 66110890 | ID=MS.gene69911.t1.exon5;Parent=MS.gene69911.t1 |
| chr1.4 | CDS | 66110890 | 66111027 | 66110890 | ID=cds.MS.gene69911.t1;Parent=MS.gene69911.t1 |
| chr1.4 | exon | 66111145 | 66111196 | 66111145 | ID=MS.gene69911.t1.exon6;Parent=MS.gene69911.t1 |
| chr1.4 | CDS | 66111145 | 66111196 | 66111145 | ID=cds.MS.gene69911.t1;Parent=MS.gene69911.t1 |
| chr1.4 | exon | 66111350 | 66111429 | 66111350 | ID=MS.gene69911.t1.exon7;Parent=MS.gene69911.t1 |
| chr1.4 | CDS | 66111350 | 66111429 | 66111350 | ID=cds.MS.gene69911.t1;Parent=MS.gene69911.t1 |
| chr1.4 | exon | 66111948 | 66112007 | 66111948 | ID=MS.gene69911.t1.exon8;Parent=MS.gene69911.t1 |
| chr1.4 | CDS | 66111948 | 66112007 | 66111948 | ID=cds.MS.gene69911.t1;Parent=MS.gene69911.t1 |
| chr1.4 | exon | 66112277 | 66112357 | 66112277 | ID=MS.gene69911.t1.exon9;Parent=MS.gene69911.t1 |
| chr1.4 | CDS | 66112277 | 66112357 | 66112277 | ID=cds.MS.gene69911.t1;Parent=MS.gene69911.t1 |
| chr1.4 | exon | 66112481 | 66112570 | 66112481 | ID=MS.gene69911.t1.exon10;Parent=MS.gene69911.t1 |
| chr1.4 | CDS | 66112481 | 66112570 | 66112481 | ID=cds.MS.gene69911.t1;Parent=MS.gene69911.t1 |
| Gene Sequence |
| Protein sequence |
