Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70537.t1 | XP_003601451.1 | 98.2 | 443 | 8 | 0 | 1 | 443 | 1 | 443 | 1.80E-244 | 854.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70537.t1 | Q9SGU9 | 75.1 | 401 | 99 | 1 | 39 | 438 | 40 | 440 | 4.5e-175 | 615.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70537.t1 | G7J805 | 98.2 | 443 | 8 | 0 | 1 | 443 | 1 | 443 | 1.3e-244 | 854.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene029829 | MS.gene70537 | PPI |
| MS.gene24606 | MS.gene70537 | PPI |
| MS.gene70537 | MS.gene75011 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70537.t1 | MTR_3g080850 | 98.194 | 443 | 8 | 0 | 1 | 443 | 1 | 443 | 0.0 | 895 |
| MS.gene70537.t1 | MTR_1g077890 | 74.718 | 443 | 110 | 2 | 1 | 441 | 1 | 443 | 0.0 | 662 |
| MS.gene70537.t1 | MTR_6g012730 | 30.357 | 336 | 219 | 7 | 92 | 423 | 138 | 462 | 1.64e-41 | 154 |
| MS.gene70537.t1 | MTR_7g011230 | 29.730 | 333 | 219 | 7 | 92 | 420 | 196 | 517 | 2.30e-38 | 146 |
| MS.gene70537.t1 | MTR_1g064320 | 29.581 | 382 | 230 | 13 | 48 | 420 | 96 | 447 | 9.85e-36 | 137 |
| MS.gene70537.t1 | MTR_1g064320 | 29.581 | 382 | 230 | 13 | 48 | 420 | 97 | 448 | 1.10e-35 | 137 |
| MS.gene70537.t1 | MTR_6g012730 | 28.783 | 337 | 203 | 8 | 92 | 423 | 138 | 442 | 7.41e-33 | 129 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70537.t1 | AT1G64660 | 74.876 | 402 | 100 | 1 | 39 | 439 | 40 | 441 | 0.0 | 628 |
| MS.gene70537.t1 | AT3G01120 | 34.132 | 334 | 203 | 8 | 92 | 420 | 224 | 545 | 1.24e-50 | 180 |
| MS.gene70537.t1 | AT1G33320 | 30.655 | 336 | 215 | 9 | 90 | 420 | 33 | 355 | 8.74e-42 | 152 |
| MS.gene70537.t1 | AT1G33320 | 30.655 | 336 | 215 | 9 | 90 | 420 | 72 | 394 | 1.90e-41 | 152 |
| MS.gene70537.t1 | AT1G33320 | 29.907 | 321 | 207 | 9 | 105 | 420 | 3 | 310 | 4.64e-36 | 135 |
| MS.gene70537.t1 | AT3G57050 | 29.032 | 403 | 246 | 14 | 46 | 439 | 13 | 384 | 5.80e-35 | 134 |
| MS.gene70537.t1 | AT3G57050 | 29.032 | 403 | 246 | 14 | 46 | 439 | 35 | 406 | 8.93e-35 | 134 |
| MS.gene70537.t1 | AT3G57050 | 29.032 | 403 | 246 | 14 | 46 | 439 | 76 | 447 | 1.96e-34 | 134 |
| MS.gene70537.t1 | AT3G57050 | 29.032 | 403 | 246 | 14 | 46 | 439 | 91 | 462 | 2.36e-34 | 134 |
| MS.gene70537.t1 | AT3G57050 | 31.613 | 310 | 175 | 12 | 46 | 341 | 91 | 377 | 4.32e-30 | 120 |
Find 123 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGCTTCTAATACTCTTTA+TGG | 0.133950 | 3.1:+67496392 | MS.gene70537:CDS |
| TTGCAAAACTATGCTCATTT+TGG | 0.190448 | 3.1:+67497760 | MS.gene70537:CDS |
| GCCAATGCCCGCCATGAATT+TGG | 0.195339 | 3.1:+67496104 | MS.gene70537:CDS |
| GACAGTTCAAATGCTACCTT+TGG | 0.325926 | 3.1:-67497511 | None:intergenic |
| GCATTGGCGAGTGCGGCCTC+TGG | 0.329540 | 3.1:-67496089 | None:intergenic |
| GCTACCTTTGGGTTCATTGT+TGG | 0.369052 | 3.1:-67497499 | None:intergenic |
| GGCTGTACAATAGGCGGCCT+CGG | 0.370564 | 3.1:-67496309 | None:intergenic |
| GAGGAGGAACAGAAACTTGC+TGG | 0.376846 | 3.1:+67497859 | MS.gene70537:CDS |
| GGCTGAGATTGAGGACGGTT+GGG | 0.382101 | 3.1:-67496262 | None:intergenic |
| GGTGGTGGTGACATTATTGC+AGG | 0.382112 | 3.1:+67496716 | MS.gene70537:CDS |
| ACTACCAGAGCAAGACATTA+GGG | 0.386384 | 3.1:-67497815 | None:intergenic |
| CATGCCACTGGCTGTACAAT+AGG | 0.389277 | 3.1:-67496318 | None:intergenic |
| CACCATGTTCGCCAAATTCA+TGG | 0.395995 | 3.1:-67496115 | None:intergenic |
| CATTGGCGAGTGCGGCCTCT+GGG | 0.403366 | 3.1:-67496088 | None:intergenic |
| CGGCTGAGATTGAGGACGGT+TGG | 0.412741 | 3.1:-67496263 | None:intergenic |
| GCCAAATTCATGGCGGGCAT+TGG | 0.417529 | 3.1:-67496105 | None:intergenic |
| CTCGAAAACCTTGTTGTTGA+GGG | 0.418479 | 3.1:+67496014 | MS.gene70537:CDS |
| ACTCTCCGCAAAATATTTGC+TGG | 0.420553 | 3.1:+67496191 | MS.gene70537:CDS |
| GGCAACAAAAGTTATGGTTA+TGG | 0.429995 | 3.1:+67497679 | MS.gene70537:CDS |
| TACTACCAGAGCAAGACATT+AGG | 0.431550 | 3.1:-67497816 | None:intergenic |
| CTGCTTTCTCCTGCTCGTCT+TGG | 0.446270 | 3.1:+67496653 | MS.gene70537:CDS |
| CGCCATGAATTTGGCGAACA+TGG | 0.446911 | 3.1:+67496113 | MS.gene70537:CDS |
| AAAATATTTGCTGGAGAGCT+TGG | 0.450787 | 3.1:+67496200 | MS.gene70537:CDS |
| CTTCGAGGGCCGCCATCTTA+CGG | 0.450790 | 3.1:-67496283 | None:intergenic |
| CAAATACTCCTGAGCTAGCT+AGG | 0.456437 | 3.1:+67496576 | MS.gene70537:CDS |
| ATTCTCAACTGCTTCCAAAT+CGG | 0.458070 | 3.1:-67496486 | None:intergenic |
| ATGAATTTGGCGAACATGGT+GGG | 0.464837 | 3.1:+67496117 | MS.gene70537:CDS |
| TCAAGGAGCCATGATGCTGC+TGG | 0.465864 | 3.1:+67497474 | MS.gene70537:CDS |
| AGGCGGCCTCGGTGCCTTCG+AGG | 0.465951 | 3.1:-67496298 | None:intergenic |
| TCCATAGGCAACAAAAGTTA+TGG | 0.473714 | 3.1:+67497673 | MS.gene70537:CDS |
| TGGGATTCTTTGTGTTGACA+TGG | 0.474228 | 3.1:+67497702 | MS.gene70537:CDS |
| AGAAATGCTGCAAGAGTGCA+TGG | 0.496586 | 3.1:-67496421 | None:intergenic |
| GGGATTCTTTGTGTTGACAT+GGG | 0.496704 | 3.1:+67497703 | MS.gene70537:CDS |
| GGACTCAATGTGATCTATCC+TGG | 0.499685 | 3.1:+67497616 | MS.gene70537:CDS |
| CCATCTTACGGCTGAGATTG+AGG | 0.506032 | 3.1:-67496271 | None:intergenic |
| CAAGGAGCCATGATGCTGCT+GGG | 0.506322 | 3.1:+67497475 | MS.gene70537:CDS |
| GTATTTGCCACATTCAAGCT+TGG | 0.509683 | 3.1:-67496560 | None:intergenic |
| CCTCAATCTCAGCCGTAAGA+TGG | 0.509888 | 3.1:+67496271 | MS.gene70537:CDS |
| GCTTCTAATACTCTTTATGG+TGG | 0.511265 | 3.1:+67496395 | MS.gene70537:CDS |
| CAGCCACGGCGGACATATTG+TGG | 0.513663 | 3.1:+67496373 | MS.gene70537:CDS |
| GTCAGAGAGAATCCCACACC+TGG | 0.515259 | 3.1:+67497531 | MS.gene70537:CDS |
| CGTGCAATCCTAGCTAGCTC+AGG | 0.515563 | 3.1:-67496584 | None:intergenic |
| ACTGACATCCTCACCATCCC+TGG | 0.518257 | 3.1:-67497889 | None:intergenic |
| AACGCATTGATGGGAATTCA+AGG | 0.519505 | 3.1:+67497457 | MS.gene70537:CDS |
| ACAGTTCAAATGCTACCTTT+GGG | 0.519702 | 3.1:-67497510 | None:intergenic |
| GGCGGCCTCGGTGCCTTCGA+GGG | 0.521473 | 3.1:-67496297 | None:intergenic |
| CATGCTGTGGATGATCTTCA+AGG | 0.523751 | 3.1:-67497639 | None:intergenic |
| CCTCGAAAACCTTGTTGTTG+AGG | 0.524182 | 3.1:+67496013 | MS.gene70537:CDS |
| GACTGTGTTCTTTCATGCGA+AGG | 0.524215 | 3.1:-67497555 | None:intergenic |
| CTGTTACAGCTCAGCAGCCA+CGG | 0.525836 | 3.1:+67496359 | MS.gene70537:CDS |
| CTTCTAATACTCTTTATGGT+GGG | 0.526302 | 3.1:+67496396 | MS.gene70537:CDS |
| GCTGGAGAGCTTGGTCATGA+AGG | 0.528198 | 3.1:+67496209 | MS.gene70537:CDS |
| TGTTGGCCCCAGCAGCATCA+TGG | 0.530505 | 3.1:-67497482 | None:intergenic |
| GGATTCTTTGTGTTGACATG+GGG | 0.532362 | 3.1:+67497704 | MS.gene70537:CDS |
| AACAAAAGTTATGGTTATGG+TGG | 0.536628 | 3.1:+67497682 | MS.gene70537:CDS |
| GGAGCAGAAGTGGAGTCAGC+TGG | 0.536681 | 3.1:+67497930 | MS.gene70537:CDS |
| TGACTCAAAATACAGCACTT+TGG | 0.536801 | 3.1:-67496528 | None:intergenic |
| CGTCTTTGCCCTCAACAACA+AGG | 0.541523 | 3.1:-67496022 | None:intergenic |
| ATCTCTAAGTTTATCAGTGG+TGG | 0.542218 | 3.1:+67496698 | MS.gene70537:CDS |
| TCTAAGTTTATCAGTGGTGG+TGG | 0.543204 | 3.1:+67496701 | MS.gene70537:CDS |
| TCATGCGAAGGCCCAGGTGT+GGG | 0.543259 | 3.1:-67497543 | None:intergenic |
| GAAACCCTAATGTCTTGCTC+TGG | 0.544821 | 3.1:+67497811 | MS.gene70537:CDS |
| CGAGCAGGAGAAAGCAGCAT+AGG | 0.546115 | 3.1:-67496647 | None:intergenic |
| ATGTTCGCCAAATTCATGGC+GGG | 0.548060 | 3.1:-67496111 | None:intergenic |
| TTGGAACATTGGAGCAGAAG+TGG | 0.548304 | 3.1:+67497920 | MS.gene70537:CDS |
| CTCTGCCACCTTCACCGTCA+TGG | 0.548584 | 3.1:+67496160 | MS.gene70537:CDS |
| CGTAAGATGGCGGCCCTCGA+AGG | 0.549334 | 3.1:+67496284 | MS.gene70537:CDS |
| GTTCTTTCATGCGAAGGCCC+AGG | 0.550181 | 3.1:-67497549 | None:intergenic |
| AGAAAGCAGCATAGGAGCAA+AGG | 0.550769 | 3.1:-67496639 | None:intergenic |
| AGTTGGATACATTGGAACAT+TGG | 0.552093 | 3.1:+67497909 | MS.gene70537:CDS |
| AGAAATAGCGGACATGCCAC+TGG | 0.552652 | 3.1:-67496330 | None:intergenic |
| AGAACACAGTCATCGTGCAT+TGG | 0.554112 | 3.1:+67497567 | MS.gene70537:CDS |
| ACATCTGCACCAAGACGAGC+AGG | 0.554578 | 3.1:-67496662 | None:intergenic |
| CACAAGTAGTGAGCTGAATG+AGG | 0.555659 | 3.1:+67497840 | MS.gene70537:CDS |
| CATGACGGTGAAGGTGGCAG+AGG | 0.555789 | 3.1:-67496159 | None:intergenic |
| TGCTCGTCTTGGTGCAGATG+TGG | 0.556305 | 3.1:+67496664 | MS.gene70537:CDS |
| TGTGGATGATCTTCAAGGCC+AGG | 0.556561 | 3.1:-67497634 | None:intergenic |
| ACAAAAGTTATGGTTATGGT+GGG | 0.556650 | 3.1:+67497683 | MS.gene70537:CDS |
| TGAATTTGGCGAACATGGTG+GGG | 0.557188 | 3.1:+67496118 | MS.gene70537:CDS |
| AAACTTGCTGGGATTACACC+AGG | 0.558665 | 3.1:+67497871 | MS.gene70537:CDS |
| TTCATGCGAAGGCCCAGGTG+TGG | 0.560694 | 3.1:-67497544 | None:intergenic |
| AGAATACATGGCGGATACGT+TGG | 0.562710 | 3.1:+67495959 | None:intergenic |
| AGGATGTCAGTTGGATACAT+TGG | 0.562882 | 3.1:+67497901 | MS.gene70537:CDS |
| GTTGAGAATGCAATTGTGGA+AGG | 0.566748 | 3.1:+67496500 | MS.gene70537:CDS |
| ATGGCGGGCATTGGCGAGTG+CGG | 0.568985 | 3.1:-67496096 | None:intergenic |
| CATGAATTTGGCGAACATGG+TGG | 0.571402 | 3.1:+67496116 | MS.gene70537:CDS |
| GGACGGTTGGGTTGAAATGA+CGG | 0.578007 | 3.1:-67496250 | None:intergenic |
| TCTTGCAGCATTTCTTTGTG+AGG | 0.579069 | 3.1:+67496429 | MS.gene70537:CDS |
| ATCTGGTTCCATGACGGTGA+AGG | 0.580223 | 3.1:-67496168 | None:intergenic |
| TGGGGTTAACATGTCGATTG+AGG | 0.586048 | 3.1:+67496136 | MS.gene70537:CDS |
| TGCTGGGATTACACCAGGGA+TGG | 0.593726 | 3.1:+67497876 | MS.gene70537:CDS |
| GGATATGTCAACAAAAGTTG+TGG | 0.595732 | 3.1:-67496465 | None:intergenic |
| TGCAAATCCAAGCTTGAATG+TGG | 0.596227 | 3.1:+67496553 | MS.gene70537:CDS |
| TGGTTCCATGACGGTGAAGG+TGG | 0.602134 | 3.1:-67496165 | None:intergenic |
| AAGGAGCCATGATGCTGCTG+GGG | 0.605331 | 3.1:+67497476 | MS.gene70537:CDS |
| GGATTACACCAGGGATGGTG+AGG | 0.605740 | 3.1:+67497881 | MS.gene70537:CDS |
| AGGAGGAACAGAAACTTGCT+GGG | 0.605841 | 3.1:+67497860 | MS.gene70537:CDS |
| GCCGCCTATTGTACAGCCAG+TGG | 0.608219 | 3.1:+67496314 | MS.gene70537:CDS |
| AGCAGTTGAGAATGCAATTG+TGG | 0.608406 | 3.1:+67496496 | MS.gene70537:CDS |
| CATGAACTATTGAAATCCAT+AGG | 0.612583 | 3.1:+67497658 | MS.gene70537:CDS |
| CTTACGGCTGAGATTGAGGA+CGG | 0.623850 | 3.1:-67496267 | None:intergenic |
| TTGTGTTGACATGGGGACAG+TGG | 0.626253 | 3.1:+67497711 | MS.gene70537:CDS |
| GGGATGGTGAGGATGTCAGT+TGG | 0.628293 | 3.1:+67497892 | MS.gene70537:CDS |
| GAGAGTATCTGGTTCCATGA+CGG | 0.637077 | 3.1:-67496174 | None:intergenic |
| AGTATCTCTAAGTTTATCAG+TGG | 0.640242 | 3.1:+67496695 | MS.gene70537:CDS |
| GATTTCAATAGTTCATGCTG+TGG | 0.640950 | 3.1:-67497652 | None:intergenic |
| TAACAGAACTGCAGAAATAG+CGG | 0.644901 | 3.1:-67496342 | None:intergenic |
| TTGAGAATGCAATTGTGGAA+GGG | 0.645173 | 3.1:+67496501 | MS.gene70537:CDS |
| GGCGGCCCTCGAAGGCACCG+AGG | 0.659707 | 3.1:+67496292 | MS.gene70537:CDS |
| AAAATGACAGGAGCTGTGTG+TGG | 0.660955 | 3.1:+67497418 | MS.gene70537:intron |
| CAATCTCAGCCGTAAGATGG+CGG | 0.663207 | 3.1:+67496274 | MS.gene70537:CDS |
| GAAATGCTGCAAGAGTGCAT+GGG | 0.674218 | 3.1:-67496420 | None:intergenic |
| AAGTAGTGAGCTGAATGAGG+AGG | 0.679239 | 3.1:+67497843 | MS.gene70537:CDS |
| GGGGCCAACAATGAACCCAA+AGG | 0.683668 | 3.1:+67497495 | MS.gene70537:CDS |
| AAACTGACAAAATTCAATGG+CGG | 0.687533 | 3.1:+67496050 | MS.gene70537:CDS |
| TCAGAGAGAATCCCACACCT+GGG | 0.688572 | 3.1:+67497532 | MS.gene70537:CDS |
| GCCACTGGCTGTACAATAGG+CGG | 0.689799 | 3.1:-67496315 | None:intergenic |
| AGAATCTGACGTAGACCCAG+AGG | 0.698857 | 3.1:+67496073 | MS.gene70537:CDS |
| AAGCCACAATATGTCCGCCG+TGG | 0.698957 | 3.1:-67496376 | None:intergenic |
| AACTTGCTGGGATTACACCA+GGG | 0.702488 | 3.1:+67497872 | MS.gene70537:CDS |
| AAATGACAGGAGCTGTGTGT+GGG | 0.705210 | 3.1:+67497419 | MS.gene70537:intron |
| CATGTTCGCCAAATTCATGG+CGG | 0.725851 | 3.1:-67496112 | None:intergenic |
| TTACAGCTCAGCAGCCACGG+CGG | 0.762872 | 3.1:+67496362 | MS.gene70537:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAAAATAACTTTTTTTTTTA+AGG | - | chr3.1:67497303-67497322 | None:intergenic | 10.0% |
| !!! | GAATAATATATTTTAAACAA+AGG | - | chr3.1:67496859-67496878 | None:intergenic | 10.0% |
| !! | AATTCTTTAATAATAAAGAC+CGG | - | chr3.1:67497019-67497038 | None:intergenic | 15.0% |
| !!! | AATTAATTTTAAAATGTCTC+CGG | + | chr3.1:67496997-67497016 | MS.gene70537:intron | 15.0% |
| !!! | ATATATTTTAAACAAAGGAA+AGG | - | chr3.1:67496854-67496873 | None:intergenic | 15.0% |
| !! | AAAAAACTGACAAAATTCAA+TGG | + | chr3.1:67496047-67496066 | MS.gene70537:CDS | 20.0% |
| !! | ATAGAGTAATATTAATAACG+TGG | + | chr3.1:67497145-67497164 | MS.gene70537:intron | 20.0% |
| !! | CTTTCAAAGAAAAAAATTGT+TGG | - | chr3.1:67496888-67496907 | None:intergenic | 20.0% |
| !! | TCATAAAACTATACAATGTA+CGG | - | chr3.1:67496945-67496964 | None:intergenic | 20.0% |
| !!! | ATTGAATTTTGTCAGTTTTT+TGG | - | chr3.1:67496048-67496067 | None:intergenic | 20.0% |
| ! | ATTCAACTATTTGCCTAATA+TGG | - | chr3.1:67496803-67496822 | None:intergenic | 25.0% |
| ! | CACTCAAACAAATATAATGT+TGG | - | chr3.1:67496919-67496938 | None:intergenic | 25.0% |
| ! | GCAAAATAGTAGATTTCTAT+TGG | + | chr3.1:67497167-67497186 | MS.gene70537:intron | 25.0% |
| !! | AGTTTGGTAATTCATAATAG+CGG | - | chr3.1:67496771-67496790 | None:intergenic | 25.0% |
| !!! | TCAAACTCACGTTTTTTTAA+AGG | - | chr3.1:67497331-67497350 | None:intergenic | 25.0% |
| AAACTGACAAAATTCAATGG+CGG | + | chr3.1:67496050-67496069 | MS.gene70537:CDS | 30.0% | |
| AACAAAAGTTATGGTTATGG+TGG | + | chr3.1:67497682-67497701 | MS.gene70537:CDS | 30.0% | |
| AATATGGCGAAACAAAAGTT+TGG | - | chr3.1:67496787-67496806 | None:intergenic | 30.0% | |
| ACAAAAGTTATGGTTATGGT+GGG | + | chr3.1:67497683-67497702 | MS.gene70537:CDS | 30.0% | |
| AGTATCTCTAAGTTTATCAG+TGG | + | chr3.1:67496695-67496714 | MS.gene70537:CDS | 30.0% | |
| CATGAACTATTGAAATCCAT+AGG | + | chr3.1:67497658-67497677 | MS.gene70537:CDS | 30.0% | |
| CTTCTAATACTCTTTATGGT+GGG | + | chr3.1:67496396-67496415 | MS.gene70537:CDS | 30.0% | |
| ! | TTGCAAAACTATGCTCATTT+TGG | + | chr3.1:67497760-67497779 | MS.gene70537:CDS | 30.0% |
| ! | TTTGAAACCTTGAAAATGAC+AGG | + | chr3.1:67497406-67497425 | MS.gene70537:intron | 30.0% |
| ! | TTTTGTTGACATATCCGATT+TGG | + | chr3.1:67496472-67496491 | MS.gene70537:CDS | 30.0% |
| !! | AACTTTTGTTTCGCCATATT+AGG | + | chr3.1:67496787-67496806 | MS.gene70537:intron | 30.0% |
| !! | GTTTTATGGCTGTTAGTTTA+GGG | + | chr3.1:67497782-67497801 | MS.gene70537:CDS | 30.0% |
| !!! | CTATGCTCATTTTGGTTTTA+TGG | + | chr3.1:67497768-67497787 | MS.gene70537:CDS | 30.0% |
| !!! | GTTGTACACTTTATTTTGAG+AGG | - | chr3.1:67497381-67497400 | None:intergenic | 30.0% |
| ACAGTTCAAATGCTACCTTT+GGG | - | chr3.1:67497513-67497532 | None:intergenic | 35.0% | |
| AGTTGGATACATTGGAACAT+TGG | + | chr3.1:67497909-67497928 | MS.gene70537:CDS | 35.0% | |
| ATCTCTAAGTTTATCAGTGG+TGG | + | chr3.1:67496698-67496717 | MS.gene70537:CDS | 35.0% | |
| ATTCTCAACTGCTTCCAAAT+CGG | - | chr3.1:67496489-67496508 | None:intergenic | 35.0% | |
| GATTTCAATAGTTCATGCTG+TGG | - | chr3.1:67497655-67497674 | None:intergenic | 35.0% | |
| GCAACCAGACTCAAAAAATT+AGG | + | chr3.1:67497595-67497614 | MS.gene70537:CDS | 35.0% | |
| GCTTCTAATACTCTTTATGG+TGG | + | chr3.1:67496395-67496414 | MS.gene70537:CDS | 35.0% | |
| GGATATGTCAACAAAAGTTG+TGG | - | chr3.1:67496468-67496487 | None:intergenic | 35.0% | |
| GGCAACAAAAGTTATGGTTA+TGG | + | chr3.1:67497679-67497698 | MS.gene70537:CDS | 35.0% | |
| GTGGCTTCTAATACTCTTTA+TGG | + | chr3.1:67496392-67496411 | MS.gene70537:CDS | 35.0% | |
| TAACAGAACTGCAGAAATAG+CGG | - | chr3.1:67496345-67496364 | None:intergenic | 35.0% | |
| TCCATAGGCAACAAAAGTTA+TGG | + | chr3.1:67497673-67497692 | MS.gene70537:CDS | 35.0% | |
| TGACTCAAAATACAGCACTT+TGG | - | chr3.1:67496531-67496550 | None:intergenic | 35.0% | |
| TTGAGAATGCAATTGTGGAA+GGG | + | chr3.1:67496501-67496520 | MS.gene70537:CDS | 35.0% | |
| ! | AAAATATTTGCTGGAGAGCT+TGG | + | chr3.1:67496200-67496219 | MS.gene70537:CDS | 35.0% |
| ! | ACCATAACTTTTGTTGCCTA+TGG | - | chr3.1:67497677-67497696 | None:intergenic | 35.0% |
| !! | AAGTTTTGTGAACGCATTGA+TGG | + | chr3.1:67497447-67497466 | MS.gene70537:CDS | 35.0% |
| !! | AGTTTTGTGAACGCATTGAT+GGG | + | chr3.1:67497448-67497467 | MS.gene70537:CDS | 35.0% |
| !! | GGTTTTATGGCTGTTAGTTT+AGG | + | chr3.1:67497781-67497800 | MS.gene70537:CDS | 35.0% |
| !!! | AATATTTTGCGGAGAGTATC+TGG | - | chr3.1:67496188-67496207 | None:intergenic | 35.0% |
| !!! | GAGTCCTAATTTTTTGAGTC+TGG | - | chr3.1:67497602-67497621 | None:intergenic | 35.0% |
| ACTACCAGAGCAAGACATTA+GGG | - | chr3.1:67497818-67497837 | None:intergenic | 40.0% | |
| ACTCTCCGCAAAATATTTGC+TGG | + | chr3.1:67496191-67496210 | MS.gene70537:CDS | 40.0% | |
| AGCAGTTGAGAATGCAATTG+TGG | + | chr3.1:67496496-67496515 | MS.gene70537:CDS | 40.0% | |
| AGCGGTCACAATTATGTGAA+AGG | - | chr3.1:67496753-67496772 | None:intergenic | 40.0% | |
| AGGATGTCAGTTGGATACAT+TGG | + | chr3.1:67497901-67497920 | MS.gene70537:CDS | 40.0% | |
| ATGAATTTGGCGAACATGGT+GGG | + | chr3.1:67496117-67496136 | MS.gene70537:CDS | 40.0% | |
| GACAGTTCAAATGCTACCTT+TGG | - | chr3.1:67497514-67497533 | None:intergenic | 40.0% | |
| GTATTTGCCACATTCAAGCT+TGG | - | chr3.1:67496563-67496582 | None:intergenic | 40.0% | |
| GTTGAGAATGCAATTGTGGA+AGG | + | chr3.1:67496500-67496519 | MS.gene70537:CDS | 40.0% | |
| TACTACCAGAGCAAGACATT+AGG | - | chr3.1:67497819-67497838 | None:intergenic | 40.0% | |
| TCTAAGTTTATCAGTGGTGG+TGG | + | chr3.1:67496701-67496720 | MS.gene70537:CDS | 40.0% | |
| TCTTGCAGCATTTCTTTGTG+AGG | + | chr3.1:67496429-67496448 | MS.gene70537:CDS | 40.0% | |
| TGCAAATCCAAGCTTGAATG+TGG | + | chr3.1:67496553-67496572 | MS.gene70537:CDS | 40.0% | |
| ! | AACGCATTGATGGGAATTCA+AGG | + | chr3.1:67497457-67497476 | MS.gene70537:CDS | 40.0% |
| ! | GCTCTCCAGCAAATATTTTG+CGG | - | chr3.1:67496199-67496218 | None:intergenic | 40.0% |
| ! | GGATTCTTTGTGTTGACATG+GGG | + | chr3.1:67497704-67497723 | MS.gene70537:CDS | 40.0% |
| ! | GGGATTCTTTGTGTTGACAT+GGG | + | chr3.1:67497703-67497722 | MS.gene70537:CDS | 40.0% |
| ! | TGGGATTCTTTGTGTTGACA+TGG | + | chr3.1:67497702-67497721 | MS.gene70537:CDS | 40.0% |
| !! | CTCGAAAACCTTGTTGTTGA+GGG | + | chr3.1:67496014-67496033 | MS.gene70537:CDS | 40.0% |
| AAAATGACAGGAGCTGTGTG+TGG | + | chr3.1:67497418-67497437 | MS.gene70537:intron | 45.0% | |
| AAATGACAGGAGCTGTGTGT+GGG | + | chr3.1:67497419-67497438 | MS.gene70537:intron | 45.0% | |
| AAGTAGTGAGCTGAATGAGG+AGG | + | chr3.1:67497843-67497862 | MS.gene70537:CDS | 45.0% | |
| ACGCAAAAAAGGAGTGACTG+TGG | + | chr3.1:67496604-67496623 | MS.gene70537:CDS | 45.0% | |
| AGAAAGCAGCATAGGAGCAA+AGG | - | chr3.1:67496642-67496661 | None:intergenic | 45.0% | |
| AGAACACAGTCATCGTGCAT+TGG | + | chr3.1:67497567-67497586 | MS.gene70537:CDS | 45.0% | |
| ATGTTCGCCAAATTCATGGC+GGG | - | chr3.1:67496114-67496133 | None:intergenic | 45.0% | |
| CAAAAAAGGAGTGACTGTGG+TGG | + | chr3.1:67496607-67496626 | MS.gene70537:CDS | 45.0% | |
| CAAATACTCCTGAGCTAGCT+AGG | + | chr3.1:67496576-67496595 | MS.gene70537:CDS | 45.0% | |
| CACAAGTAGTGAGCTGAATG+AGG | + | chr3.1:67497840-67497859 | MS.gene70537:CDS | 45.0% | |
| CACCATGTTCGCCAAATTCA+TGG | - | chr3.1:67496118-67496137 | None:intergenic | 45.0% | |
| CATGAATTTGGCGAACATGG+TGG | + | chr3.1:67496116-67496135 | MS.gene70537:CDS | 45.0% | |
| CATGCTGTGGATGATCTTCA+AGG | - | chr3.1:67497642-67497661 | None:intergenic | 45.0% | |
| CATGTTCGCCAAATTCATGG+CGG | - | chr3.1:67496115-67496134 | None:intergenic | 45.0% | |
| GAAACCCTAATGTCTTGCTC+TGG | + | chr3.1:67497811-67497830 | MS.gene70537:CDS | 45.0% | |
| GACTGTGTTCTTTCATGCGA+AGG | - | chr3.1:67497558-67497577 | None:intergenic | 45.0% | |
| GCTAGGATTGCACGCAAAAA+AGG | + | chr3.1:67496593-67496612 | MS.gene70537:CDS | 45.0% | |
| GGACTCAATGTGATCTATCC+TGG | + | chr3.1:67497616-67497635 | MS.gene70537:CDS | 45.0% | |
| TGAATTTGGCGAACATGGTG+GGG | + | chr3.1:67496118-67496137 | MS.gene70537:CDS | 45.0% | |
| TTGGAACATTGGAGCAGAAG+TGG | + | chr3.1:67497920-67497939 | MS.gene70537:CDS | 45.0% | |
| ! | AGAAATGCTGCAAGAGTGCA+TGG | - | chr3.1:67496424-67496443 | None:intergenic | 45.0% |
| ! | AGGAGGAACAGAAACTTGCT+GGG | + | chr3.1:67497860-67497879 | MS.gene70537:CDS | 45.0% |
| ! | CCTCAACAACAAGGTTTTCG+AGG | - | chr3.1:67496016-67496035 | None:intergenic | 45.0% |
| ! | GAAATGCTGCAAGAGTGCAT+GGG | - | chr3.1:67496423-67496442 | None:intergenic | 45.0% |
| ! | GCTACCTTTGGGTTCATTGT+TGG | - | chr3.1:67497502-67497521 | None:intergenic | 45.0% |
| ! | TGGGGTTAACATGTCGATTG+AGG | + | chr3.1:67496136-67496155 | MS.gene70537:CDS | 45.0% |
| !! | AAACTTGCTGGGATTACACC+AGG | + | chr3.1:67497871-67497890 | MS.gene70537:CDS | 45.0% |
| !! | AACTTGCTGGGATTACACCA+GGG | + | chr3.1:67497872-67497891 | MS.gene70537:CDS | 45.0% |
| !! | CCTCGAAAACCTTGTTGTTG+AGG | + | chr3.1:67496013-67496032 | MS.gene70537:CDS | 45.0% |
| !! | GAGAGTATCTGGTTCCATGA+CGG | - | chr3.1:67496177-67496196 | None:intergenic | 45.0% |
| !!! | CACAGCTCCTGTCATTTTCA+AGG | - | chr3.1:67497416-67497435 | None:intergenic | 45.0% |
| !! | TTAAAATTAATTATATGATT+TGG | - | chr3.1:67496989-67497008 | None:intergenic | 5.0% |
| AGAATCTGACGTAGACCCAG+AGG | + | chr3.1:67496073-67496092 | MS.gene70537:CDS | 50.0% | |
| CAATCTCAGCCGTAAGATGG+CGG | + | chr3.1:67496274-67496293 | MS.gene70537:CDS | 50.0% | |
| CCATCTTACGGCTGAGATTG+AGG | - | chr3.1:67496274-67496293 | None:intergenic | 50.0% | |
| CCTCAATCTCAGCCGTAAGA+TGG | + | chr3.1:67496271-67496290 | MS.gene70537:CDS | 50.0% | |
| CGCCATGAATTTGGCGAACA+TGG | + | chr3.1:67496113-67496132 | MS.gene70537:CDS | 50.0% | |
| CGTCTTTGCCCTCAACAACA+AGG | - | chr3.1:67496025-67496044 | None:intergenic | 50.0% | |
| CTTACGGCTGAGATTGAGGA+CGG | - | chr3.1:67496270-67496289 | None:intergenic | 50.0% | |
| GAGGAGGAACAGAAACTTGC+TGG | + | chr3.1:67497859-67497878 | MS.gene70537:CDS | 50.0% | |
| TCAGAGAGAATCCCACACCT+GGG | + | chr3.1:67497532-67497551 | MS.gene70537:CDS | 50.0% | |
| TGTGGATGATCTTCAAGGCC+AGG | - | chr3.1:67497637-67497656 | None:intergenic | 50.0% | |
| ! | ATCTGGTTCCATGACGGTGA+AGG | - | chr3.1:67496171-67496190 | None:intergenic | 50.0% |
| ! | CATGCCACTGGCTGTACAAT+AGG | - | chr3.1:67496321-67496340 | None:intergenic | 50.0% |
| ! | GGTGGTGGTGACATTATTGC+AGG | + | chr3.1:67496716-67496735 | MS.gene70537:CDS | 50.0% |
| ! | TTGTGTTGACATGGGGACAG+TGG | + | chr3.1:67497711-67497730 | MS.gene70537:CDS | 50.0% |
| !! | AGAAATAGCGGACATGCCAC+TGG | - | chr3.1:67496333-67496352 | None:intergenic | 50.0% |
| !! | GGACGGTTGGGTTGAAATGA+CGG | - | chr3.1:67496253-67496272 | None:intergenic | 50.0% |
| AAGCCACAATATGTCCGCCG+TGG | - | chr3.1:67496379-67496398 | None:intergenic | 55.0% | |
| AAGGAGCCATGATGCTGCTG+GGG | + | chr3.1:67497476-67497495 | MS.gene70537:CDS | 55.0% | |
| ACATCTGCACCAAGACGAGC+AGG | - | chr3.1:67496665-67496684 | None:intergenic | 55.0% | |
| ACTGACATCCTCACCATCCC+TGG | - | chr3.1:67497892-67497911 | None:intergenic | 55.0% | |
| CAAGGAGCCATGATGCTGCT+GGG | + | chr3.1:67497475-67497494 | MS.gene70537:CDS | 55.0% | |
| CGAGCAGGAGAAAGCAGCAT+AGG | - | chr3.1:67496650-67496669 | None:intergenic | 55.0% | |
| CGTGCAATCCTAGCTAGCTC+AGG | - | chr3.1:67496587-67496606 | None:intergenic | 55.0% | |
| CTGCTTTCTCCTGCTCGTCT+TGG | + | chr3.1:67496653-67496672 | MS.gene70537:CDS | 55.0% | |
| CTGTTACAGCTCAGCAGCCA+CGG | + | chr3.1:67496359-67496378 | MS.gene70537:CDS | 55.0% | |
| GCCAATGCCCGCCATGAATT+TGG | + | chr3.1:67496104-67496123 | MS.gene70537:CDS | 55.0% | |
| GCTGGAGAGCTTGGTCATGA+AGG | + | chr3.1:67496209-67496228 | MS.gene70537:CDS | 55.0% | |
| GGATTACACCAGGGATGGTG+AGG | + | chr3.1:67497881-67497900 | MS.gene70537:CDS | 55.0% | |
| GGCTGAGATTGAGGACGGTT+GGG | - | chr3.1:67496265-67496284 | None:intergenic | 55.0% | |
| GGGATGGTGAGGATGTCAGT+TGG | + | chr3.1:67497892-67497911 | MS.gene70537:CDS | 55.0% | |
| GGGGCCAACAATGAACCCAA+AGG | + | chr3.1:67497495-67497514 | MS.gene70537:CDS | 55.0% | |
| GTCAGAGAGAATCCCACACC+TGG | + | chr3.1:67497531-67497550 | MS.gene70537:CDS | 55.0% | |
| GTTCTTTCATGCGAAGGCCC+AGG | - | chr3.1:67497552-67497571 | None:intergenic | 55.0% | |
| TCAAGGAGCCATGATGCTGC+TGG | + | chr3.1:67497474-67497493 | MS.gene70537:CDS | 55.0% | |
| TGCTGGGATTACACCAGGGA+TGG | + | chr3.1:67497876-67497895 | MS.gene70537:CDS | 55.0% | |
| TGGTTCCATGACGGTGAAGG+TGG | - | chr3.1:67496168-67496187 | None:intergenic | 55.0% | |
| ! | GCCACTGGCTGTACAATAGG+CGG | - | chr3.1:67496318-67496337 | None:intergenic | 55.0% |
| ! | TGCTCGTCTTGGTGCAGATG+TGG | + | chr3.1:67496664-67496683 | MS.gene70537:CDS | 55.0% |
| !! | GCCAAATTCATGGCGGGCAT+TGG | - | chr3.1:67496108-67496127 | None:intergenic | 55.0% |
| CAGCCACGGCGGACATATTG+TGG | + | chr3.1:67496373-67496392 | MS.gene70537:CDS | 60.0% | |
| CATGACGGTGAAGGTGGCAG+AGG | - | chr3.1:67496162-67496181 | None:intergenic | 60.0% | |
| CGGCTGAGATTGAGGACGGT+TGG | - | chr3.1:67496266-67496285 | None:intergenic | 60.0% | |
| CTCTGCCACCTTCACCGTCA+TGG | + | chr3.1:67496160-67496179 | MS.gene70537:CDS | 60.0% | |
| CTTCGAGGGCCGCCATCTTA+CGG | - | chr3.1:67496286-67496305 | None:intergenic | 60.0% | |
| GCCGCCTATTGTACAGCCAG+TGG | + | chr3.1:67496314-67496333 | MS.gene70537:CDS | 60.0% | |
| GGAGCAGAAGTGGAGTCAGC+TGG | + | chr3.1:67497930-67497949 | MS.gene70537:CDS | 60.0% | |
| GGCTGTACAATAGGCGGCCT+CGG | - | chr3.1:67496312-67496331 | None:intergenic | 60.0% | |
| TCATGCGAAGGCCCAGGTGT+GGG | - | chr3.1:67497546-67497565 | None:intergenic | 60.0% | |
| TGTTGGCCCCAGCAGCATCA+TGG | - | chr3.1:67497485-67497504 | None:intergenic | 60.0% | |
| TTACAGCTCAGCAGCCACGG+CGG | + | chr3.1:67496362-67496381 | MS.gene70537:CDS | 60.0% | |
| TTCATGCGAAGGCCCAGGTG+TGG | - | chr3.1:67497547-67497566 | None:intergenic | 60.0% | |
| CATTGGCGAGTGCGGCCTCT+GGG | - | chr3.1:67496091-67496110 | None:intergenic | 65.0% | |
| ! | CGTAAGATGGCGGCCCTCGA+AGG | + | chr3.1:67496284-67496303 | MS.gene70537:CDS | 65.0% |
| !! | ATGGCGGGCATTGGCGAGTG+CGG | - | chr3.1:67496099-67496118 | None:intergenic | 65.0% |
| ! | GCATTGGCGAGTGCGGCCTC+TGG | - | chr3.1:67496092-67496111 | None:intergenic | 70.0% |
| !! | AGGCGGCCTCGGTGCCTTCG+AGG | - | chr3.1:67496301-67496320 | None:intergenic | 75.0% |
| !! | GGCGGCCTCGGTGCCTTCGA+GGG | - | chr3.1:67496300-67496319 | None:intergenic | 75.0% |
| !!! | GGCGGCCCTCGAAGGCACCG+AGG | + | chr3.1:67496292-67496311 | MS.gene70537:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 67495966 | 67497987 | 67495966 | ID=MS.gene70537 |
| chr3.1 | mRNA | 67495966 | 67497987 | 67495966 | ID=MS.gene70537.t1;Parent=MS.gene70537 |
| chr3.1 | exon | 67495966 | 67496737 | 67495966 | ID=MS.gene70537.t1.exon1;Parent=MS.gene70537.t1 |
| chr3.1 | CDS | 67495966 | 67496737 | 67495966 | ID=cds.MS.gene70537.t1;Parent=MS.gene70537.t1 |
| chr3.1 | exon | 67497428 | 67497987 | 67497428 | ID=MS.gene70537.t1.exon2;Parent=MS.gene70537.t1 |
| chr3.1 | CDS | 67497428 | 67497987 | 67497428 | ID=cds.MS.gene70537.t1;Parent=MS.gene70537.t1 |
| Gene Sequence |
| Protein sequence |
