Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene70812.t1 | XP_003591009.1 | 99.7 | 354 | 1 | 0 | 1 | 354 | 1 | 354 | 3.40E-201 | 710.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene70812.t1 | Q9ASU8 | 63.1 | 350 | 121 | 1 | 1 | 350 | 1 | 342 | 3.3e-128 | 459.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene70812.t1 | G7I6W5 | 99.7 | 354 | 1 | 0 | 1 | 354 | 1 | 354 | 2.5e-201 | 710.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene054634 | MS.gene70812 | 0.836559 | 8.72E-57 | -1.69E-46 |
MS.gene056285 | MS.gene70812 | 0.843856 | 1.08E-58 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene70812.t1 | MTR_1g081240 | 99.718 | 354 | 1 | 0 | 1 | 354 | 1 | 354 | 0.0 | 728 |
MS.gene70812.t1 | MTR_1g081240 | 100.000 | 284 | 0 | 0 | 71 | 354 | 1 | 284 | 0.0 | 588 |
MS.gene70812.t1 | MTR_8g101710 | 65.819 | 354 | 114 | 1 | 1 | 354 | 1 | 347 | 2.12e-176 | 493 |
MS.gene70812.t1 | MTR_1g016510 | 66.189 | 349 | 111 | 1 | 5 | 353 | 7 | 348 | 1.35e-175 | 491 |
MS.gene70812.t1 | MTR_8g101710 | 69.455 | 275 | 84 | 0 | 1 | 275 | 1 | 275 | 4.19e-145 | 411 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene70812.t1 | AT5G11790 | 63.429 | 350 | 120 | 2 | 1 | 350 | 1 | 342 | 1.96e-167 | 471 |
MS.gene70812.t1 | AT5G56750 | 62.571 | 350 | 124 | 1 | 1 | 350 | 1 | 343 | 1.92e-166 | 468 |
MS.gene70812.t1 | AT2G19620 | 62.286 | 350 | 125 | 1 | 1 | 350 | 1 | 343 | 2.85e-160 | 452 |
MS.gene70812.t1 | AT5G56750 | 63.609 | 327 | 112 | 1 | 24 | 350 | 5 | 324 | 2.28e-159 | 449 |
MS.gene70812.t1 | AT2G19620 | 63.609 | 327 | 112 | 1 | 24 | 350 | 5 | 324 | 2.88e-155 | 439 |
MS.gene70812.t1 | AT5G11790 | 63.946 | 294 | 98 | 2 | 57 | 350 | 3 | 288 | 2.81e-140 | 400 |
MS.gene70812.t1 | AT2G19620 | 61.824 | 296 | 106 | 1 | 55 | 350 | 1 | 289 | 7.86e-136 | 389 |
Find 74 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAGAAGTGCTTGATTATTTC+GGG | 0.193671 | 1.2:+61132532 | MS.gene70812:CDS |
TGCAGATGTGTCTTGTTTCC+AGG | 0.235016 | 1.2:+61131609 | MS.gene70812:intron |
ATGAACTTGTTGTATTTCTA+TGG | 0.259747 | 1.2:+61133275 | MS.gene70812:CDS |
GCAGAAGTGCTTGATTATTT+CGG | 0.270404 | 1.2:+61132531 | MS.gene70812:CDS |
TGACATTGATTTGATACCTT+TGG | 0.276877 | 1.2:+61131221 | MS.gene70812:CDS |
CATGAAGGTCCTTTACAAAT+TGG | 0.278978 | 1.2:-61132955 | None:intergenic |
CTCTCTTGGGAGAGGAGTTC+TGG | 0.294714 | 1.2:-61135328 | None:intergenic |
ATTGGTACGATCATGGAAAT+TGG | 0.314818 | 1.2:-61135196 | None:intergenic |
AGCATCAAAGAAGCTGCTTC+TGG | 0.321149 | 1.2:-61131646 | None:intergenic |
GACATTGATTTGATACCTTT+GGG | 0.325512 | 1.2:+61131222 | MS.gene70812:CDS |
CTTAATTCCTAAACTCTCTT+GGG | 0.387702 | 1.2:-61135341 | None:intergenic |
GCTTAATTCCTAAACTCTCT+TGG | 0.388514 | 1.2:-61135342 | None:intergenic |
GCATGGCGAGAAGGGCTTGC+TGG | 0.397270 | 1.2:-61135295 | None:intergenic |
ACACGAACACGGGTTCTGAT+AGG | 0.401499 | 1.2:-61135370 | None:intergenic |
CTCCTCTCCCAAGAGAGTTT+AGG | 0.402745 | 1.2:+61135334 | MS.gene70812:CDS |
TGCAAGACACTAATATTTGC+AGG | 0.409158 | 1.2:+61134968 | MS.gene70812:CDS |
CAATTTGTAAAGGACCTTCA+TGG | 0.410762 | 1.2:+61132956 | MS.gene70812:CDS |
ATTTATCACATTGATGCTCC+TGG | 0.412043 | 1.2:+61131682 | MS.gene70812:CDS |
TAGATAGATTCAGCATGAAA+TGG | 0.422812 | 1.2:-61135001 | None:intergenic |
TCTGTTTCTGTGCTTATTTG+TGG | 0.439994 | 1.2:+61131371 | MS.gene70812:CDS |
TTACAATTAAGAGCCACATC+TGG | 0.442890 | 1.2:-61131425 | None:intergenic |
GCAGATGTGTCTTGTTTCCA+GGG | 0.443576 | 1.2:+61131610 | MS.gene70812:intron |
TGTGGATGACCTAGCTGATC+AGG | 0.452943 | 1.2:+61132506 | MS.gene70812:CDS |
GTTAAGAGAGGTTATGTGCT+TGG | 0.453832 | 1.2:+61132765 | MS.gene70812:CDS |
GGAGCTTAGATGCAGTATCC+AGG | 0.455363 | 1.2:+61133428 | MS.gene70812:intron |
TTAAGAGAGGTTATGTGCTT+GGG | 0.469054 | 1.2:+61132766 | MS.gene70812:CDS |
CTTGTTTCACCAATTTGTAA+AGG | 0.476968 | 1.2:+61132946 | MS.gene70812:CDS |
GCGCTCAATTGGTACGATCA+TGG | 0.485074 | 1.2:-61135203 | None:intergenic |
CCACGATTGCATGGCGAGAA+GGG | 0.491021 | 1.2:-61135303 | None:intergenic |
AAATACAAAGAACGAGTGCT+TGG | 0.495399 | 1.2:+61132916 | MS.gene70812:CDS |
AGGTATCAAATCAATGTCAA+TGG | 0.496519 | 1.2:-61131217 | None:intergenic |
CTTGCAGCGTTACTTCAGTA+AGG | 0.500056 | 1.2:+61133325 | MS.gene70812:CDS |
CTTGGTCAGGTTCAAGCTTG+TGG | 0.502124 | 1.2:+61135151 | MS.gene70812:intron |
GCCACGATTGCATGGCGAGA+AGG | 0.505755 | 1.2:-61135304 | None:intergenic |
GGTTCAAGCTTGTGGCTCAC+TGG | 0.506474 | 1.2:+61135159 | MS.gene70812:intron |
TTACATCTGATTCTGCTCCC+TGG | 0.507167 | 1.2:-61133446 | None:intergenic |
AAGGACCTTCATGGACTGAA+TGG | 0.512140 | 1.2:+61132965 | MS.gene70812:CDS |
TCTGGGTAAGTTATCAAAGC+AGG | 0.519292 | 1.2:-61131407 | None:intergenic |
TTCCTAAACTCTCTTGGGAG+AGG | 0.520626 | 1.2:-61135336 | None:intergenic |
CAAAATCTGCGCACTTGTTG+AGG | 0.524123 | 1.2:+61135045 | MS.gene70812:CDS |
CCCTTCTCGCCATGCAATCG+TGG | 0.524703 | 1.2:+61135303 | MS.gene70812:CDS |
TTTGATACCTTTGGGAGGAA+AGG | 0.528303 | 1.2:+61131230 | MS.gene70812:CDS |
AATTACAGCTTCTGGATGAA+AGG | 0.538316 | 1.2:+61133573 | MS.gene70812:intron |
AGTTCTTTAGTCCCTCACTT+AGG | 0.542267 | 1.2:-61134940 | None:intergenic |
TTGATTACCTTTCCTCCCAA+AGG | 0.543228 | 1.2:-61131237 | None:intergenic |
TTTATCACATTGATGCTCCT+GGG | 0.554973 | 1.2:+61131683 | MS.gene70812:CDS |
TACAATTAAGAGCCACATCT+GGG | 0.555273 | 1.2:-61131424 | None:intergenic |
GAGCTTAGATGCAGTATCCA+GGG | 0.559037 | 1.2:+61133429 | MS.gene70812:CDS |
GTTCTGGTGCCACGATTGCA+TGG | 0.561235 | 1.2:-61135312 | None:intergenic |
ATGTGCTTGGGAGTAACAGC+TGG | 0.567699 | 1.2:+61132778 | MS.gene70812:CDS |
GCGACACCGACCTCATGCCC+AGG | 0.569830 | 1.2:-61131700 | None:intergenic |
AGATGAACCACTGCTTTGTG+TGG | 0.572998 | 1.2:+61132488 | MS.gene70812:CDS |
GTTAGGTTTCAACACGAACA+CGG | 0.579506 | 1.2:-61135381 | None:intergenic |
CATTGATGCTCCTGGGCATG+AGG | 0.583175 | 1.2:+61131690 | MS.gene70812:CDS |
TGGTATGTGCGGTTTACTGA+AGG | 0.589171 | 1.2:+61133295 | MS.gene70812:CDS |
CTGGACAGAACAACAGACCC+TGG | 0.592111 | 1.2:-61131627 | None:intergenic |
GACTGAATGGATTTACAACA+AGG | 0.594140 | 1.2:+61132978 | MS.gene70812:CDS |
TGTATAGTGAAAACAAGCAA+AGG | 0.596635 | 1.2:+61131347 | MS.gene70812:CDS |
TTTGATAACTTACCCAGATG+TGG | 0.603486 | 1.2:+61131412 | MS.gene70812:CDS |
TTAGGTTTCAACACGAACAC+GGG | 0.605369 | 1.2:-61135380 | None:intergenic |
GTCTTAAATCAGGTTAAGAG+AGG | 0.606736 | 1.2:+61132753 | MS.gene70812:intron |
TAAATCCATTCAGTCCATGA+AGG | 0.607975 | 1.2:-61132970 | None:intergenic |
TACTGAAGTAACGCTGCAAG+AGG | 0.611186 | 1.2:-61133322 | None:intergenic |
TTTGCTTCCTCATCAAGCAA+CGG | 0.611961 | 1.2:+61135262 | MS.gene70812:CDS |
CAGAAGGCACGACCTAAGTG+AGG | 0.629716 | 1.2:+61134928 | MS.gene70812:intron |
TTGTATTTCTATGGTATGTG+CGG | 0.632844 | 1.2:+61133284 | MS.gene70812:CDS |
AAGCAAAATGTGGTTGTCTG+TGG | 0.639448 | 1.2:-61135246 | None:intergenic |
TGTTGAACCGTTGCTTGATG+AGG | 0.639451 | 1.2:-61135269 | None:intergenic |
CTTCTGCAACCTGATCAGCT+AGG | 0.641514 | 1.2:-61132515 | None:intergenic |
AACTTACAGCAAATAGTGTG+AGG | 0.646118 | 1.2:-61132810 | None:intergenic |
CTTGATGAGGAAGCAAAATG+TGG | 0.649236 | 1.2:-61135256 | None:intergenic |
ATTGATTTGATACCTTTGGG+AGG | 0.653147 | 1.2:+61131225 | MS.gene70812:CDS |
AGGTCATCCACACAAAGCAG+TGG | 0.683057 | 1.2:-61132495 | None:intergenic |
AGAAGGCACGACCTAAGTGA+GGG | 0.696572 | 1.2:+61134929 | MS.gene70812:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AATTTCATTTTTAATGAATA+TGG | - | chr1.2:61135087-61135106 | None:intergenic | 10.0% |
!! | AAAAGAGTTTATTATACTTT+AGG | - | chr1.2:61132420-61132439 | None:intergenic | 15.0% |
!! | TTATATATTAAAGTTTGGTT+TGG | - | chr1.2:61134077-61134096 | None:intergenic | 15.0% |
!!! | ATCTATTTCTTTATTCTTTA+TGG | - | chr1.2:61132355-61132374 | None:intergenic | 15.0% |
!!! | GATATTTTTTGTTTTTGTAA+AGG | + | chr1.2:61133807-61133826 | MS.gene70812:intron | 15.0% |
!!! | TAATCATTTATGTTTTTGTT+TGG | + | chr1.2:61131311-61131330 | MS.gene70812:intron | 15.0% |
!! | AACTTAAATATGTGAATCAT+AGG | - | chr1.2:61132380-61132399 | None:intergenic | 20.0% |
!! | ATACAAAAATGTCTTAAATC+AGG | + | chr1.2:61132743-61132762 | MS.gene70812:intron | 20.0% |
!! | ATATAGTTATACATACTCTT+CGG | - | chr1.2:61133482-61133501 | None:intergenic | 20.0% |
!! | ATATTCTGATTCAACATAAA+AGG | - | chr1.2:61131481-61131500 | None:intergenic | 20.0% |
!! | GCTAGTTATATATTAAAGTT+TGG | - | chr1.2:61134082-61134101 | None:intergenic | 20.0% |
!! | GCTATTACAAACATATTTAT+TGG | + | chr1.2:61131521-61131540 | MS.gene70812:intron | 20.0% |
!! | TATGTAGATAGAATCATTTA+TGG | + | chr1.2:61133374-61133393 | MS.gene70812:intron | 20.0% |
!!! | AGTTTATTATACTTTAGGAT+TGG | - | chr1.2:61132415-61132434 | None:intergenic | 20.0% |
!!! | CATAGATGATTTTTGTTTTA+TGG | + | chr1.2:61134714-61134733 | MS.gene70812:intron | 20.0% |
!!! | CATTATTATTTTCCATAATC+TGG | - | chr1.2:61133053-61133072 | None:intergenic | 20.0% |
!!! | GAGTATGTATAACTATATTT+TGG | + | chr1.2:61133484-61133503 | MS.gene70812:intron | 20.0% |
!!! | TTGTTTTTGTTTTGTTTTCT+CGG | + | chr1.2:61133668-61133687 | MS.gene70812:intron | 20.0% |
!!! | TTTAAAGTAATTATCCTACT+TGG | - | chr1.2:61134834-61134853 | None:intergenic | 20.0% |
!!! | TTTAAGACATTTTTGTATGA+AGG | - | chr1.2:61132741-61132760 | None:intergenic | 20.0% |
!!! | TTTTTAGATAAATTGAACCA+AGG | + | chr1.2:61132617-61132636 | MS.gene70812:intron | 20.0% |
! | AAACTATCCTAGAAACATAA+TGG | + | chr1.2:61131764-61131783 | MS.gene70812:intron | 25.0% |
! | AACAGATTAAATTAACTTCG+AGG | - | chr1.2:61134555-61134574 | None:intergenic | 25.0% |
! | AAGGTTAGTAAACTAATACT+AGG | - | chr1.2:61131733-61131752 | None:intergenic | 25.0% |
! | AATATATAACTAGCATAACC+AGG | + | chr1.2:61134088-61134107 | MS.gene70812:intron | 25.0% |
! | ACATGATTCACTTCAATTTA+GGG | - | chr1.2:61132262-61132281 | None:intergenic | 25.0% |
! | AGGTTATCATCAATAATAAC+AGG | - | chr1.2:61133768-61133787 | None:intergenic | 25.0% |
! | ATGTTTGTAATAGCAAAATC+TGG | - | chr1.2:61131515-61131534 | None:intergenic | 25.0% |
! | CTAAAAAGATGCAATTGTAA+TGG | - | chr1.2:61134317-61134336 | None:intergenic | 25.0% |
! | CTTATTTCCATTATGTTTCT+AGG | - | chr1.2:61131774-61131793 | None:intergenic | 25.0% |
! | GAATAAACAACTCAATTAAG+TGG | + | chr1.2:61132026-61132045 | MS.gene70812:intron | 25.0% |
! | GTAATTATAGATCAGAAAAG+AGG | - | chr1.2:61133559-61133578 | None:intergenic | 25.0% |
! | TAAACTAATACTAGGAAGAA+TGG | - | chr1.2:61131725-61131744 | None:intergenic | 25.0% |
! | TACTCAAACACATGATAAAT+AGG | - | chr1.2:61133098-61133117 | None:intergenic | 25.0% |
! | TAGTGTACAATTATGACTAA+TGG | + | chr1.2:61133531-61133550 | MS.gene70812:intron | 25.0% |
! | TATTAGTGAGGAATAAGATA+GGG | - | chr1.2:61134477-61134496 | None:intergenic | 25.0% |
! | TTAAATTAACTTCGAGGAAT+TGG | - | chr1.2:61134549-61134568 | None:intergenic | 25.0% |
! | TTGATACTCTTACTTTGATT+AGG | + | chr1.2:61132708-61132727 | MS.gene70812:intron | 25.0% |
!! | ATATGATAAAAGCATGAAAG+TGG | - | chr1.2:61133012-61133031 | None:intergenic | 25.0% |
!! | ATTGAGTTGTTTATTCAAAC+AGG | - | chr1.2:61132022-61132041 | None:intergenic | 25.0% |
!! | CATCAATAATAACAGGTTTT+AGG | - | chr1.2:61133761-61133780 | None:intergenic | 25.0% |
!! | CATTGTGATTTCTACAATTT+TGG | - | chr1.2:61134578-61134597 | None:intergenic | 25.0% |
!! | GTTCATATCAATGTTTTACT+TGG | + | chr1.2:61131924-61131943 | MS.gene70812:intron | 25.0% |
!! | TATGATAAAAGCATGAAAGT+GGG | - | chr1.2:61133011-61133030 | None:intergenic | 25.0% |
!! | TGCATTAAATCTTGATTTTG+AGG | - | chr1.2:61134389-61134408 | None:intergenic | 25.0% |
!!! | AATAGTTTTGGTGTAGAATT+TGG | - | chr1.2:61134253-61134272 | None:intergenic | 25.0% |
!!! | AGCATTTTGGTAATTAATCA+TGG | - | chr1.2:61134898-61134917 | None:intergenic | 25.0% |
!!! | ATATTAAAGTTTGGTTTGGA+AGG | - | chr1.2:61134073-61134092 | None:intergenic | 25.0% |
!!! | ATGAACTTGTTGTATTTCTA+TGG | + | chr1.2:61133275-61133294 | MS.gene70812:CDS | 25.0% |
!!! | ATTATGTACTCATTTTTCCT+TGG | - | chr1.2:61132637-61132656 | None:intergenic | 25.0% |
!!! | ATTGTTTTACAACACATACT+TGG | + | chr1.2:61135133-61135152 | MS.gene70812:intron | 25.0% |
!!! | GGATAATTACTTTAAAATGC+TGG | + | chr1.2:61134838-61134857 | MS.gene70812:intron | 25.0% |
!!! | TCATTTATGTTTTTGTTTGG+AGG | + | chr1.2:61131314-61131333 | MS.gene70812:intron | 25.0% |
AAAGAAAAGGGACATAGAAT+AGG | - | chr1.2:61132305-61132324 | None:intergenic | 30.0% | |
AACCCTCTATAGAAAGAAAA+GGG | - | chr1.2:61132317-61132336 | None:intergenic | 30.0% | |
AATGGAAATAAGTCGAAAAC+AGG | + | chr1.2:61131782-61131801 | MS.gene70812:intron | 30.0% | |
ACGTATTTGAGCTTATTTAC+TGG | - | chr1.2:61132222-61132241 | None:intergenic | 30.0% | |
ACTTCTCTTCAACTTTGAAT+AGG | + | chr1.2:61133407-61133426 | MS.gene70812:intron | 30.0% | |
AGGATGAAACATTTATACAG+AGG | - | chr1.2:61134454-61134473 | None:intergenic | 30.0% | |
AGGTATCAAATCAATGTCAA+TGG | - | chr1.2:61131220-61131239 | None:intergenic | 30.0% | |
ATGACGAAAAATTAACACGA+TGG | - | chr1.2:61132886-61132905 | None:intergenic | 30.0% | |
CAAATGTCTCGAGAATATTT+AGG | - | chr1.2:61133788-61133807 | None:intergenic | 30.0% | |
CTTAATTCCTAAACTCTCTT+GGG | - | chr1.2:61135344-61135363 | None:intergenic | 30.0% | |
CTTGTTTCACCAATTTGTAA+AGG | + | chr1.2:61132946-61132965 | MS.gene70812:CDS | 30.0% | |
GAATACCTCATCTTAAGATT+TGG | - | chr1.2:61134150-61134169 | None:intergenic | 30.0% | |
GACATGATTCACTTCAATTT+AGG | - | chr1.2:61132263-61132282 | None:intergenic | 30.0% | |
GTAGATAGAATCATTTATGG+AGG | + | chr1.2:61133377-61133396 | MS.gene70812:intron | 30.0% | |
GTATTAGTGAGGAATAAGAT+AGG | - | chr1.2:61134478-61134497 | None:intergenic | 30.0% | |
GTTAGTGTAGTTAATAGTCT+AGG | + | chr1.2:61131867-61131886 | MS.gene70812:intron | 30.0% | |
GTTTAAGAGATATTGCAGTT+AGG | + | chr1.2:61132447-61132466 | MS.gene70812:intron | 30.0% | |
TAAACCATTGTGATTTCTGA+AGG | - | chr1.2:61134619-61134638 | None:intergenic | 30.0% | |
TAATAATGCATAGTCTGACA+CGG | + | chr1.2:61133065-61133084 | MS.gene70812:intron | 30.0% | |
TAGATAGATTCAGCATGAAA+TGG | - | chr1.2:61135004-61135023 | None:intergenic | 30.0% | |
TATGGAAATAAGCTGAAAAC+AGG | + | chr1.2:61132133-61132152 | MS.gene70812:intron | 30.0% | |
TATTCTTCTCATTCTTCAAC+AGG | + | chr1.2:61133348-61133367 | MS.gene70812:intron | 30.0% | |
TGATCTATAATTACAGCTTC+TGG | + | chr1.2:61133565-61133584 | MS.gene70812:intron | 30.0% | |
TGTATAGTGAAAACAAGCAA+AGG | + | chr1.2:61131347-61131366 | MS.gene70812:CDS | 30.0% | |
! | AGATGAATTTTCAAAGCTTG+AGG | - | chr1.2:61133708-61133727 | None:intergenic | 30.0% |
! | ATCAATGTTTTACTTGGAGA+AGG | + | chr1.2:61131930-61131949 | MS.gene70812:intron | 30.0% |
! | ATGATAAAAGCATGAAAGTG+GGG | - | chr1.2:61133010-61133029 | None:intergenic | 30.0% |
! | GATGAATTTTCAAAGCTTGA+GGG | - | chr1.2:61133707-61133726 | None:intergenic | 30.0% |
! | GTTTAAGTGCTGTCATATAT+TGG | - | chr1.2:61134507-61134526 | None:intergenic | 30.0% |
! | TACTTGTTACTATGTAGCAT+CGG | - | chr1.2:61132580-61132599 | None:intergenic | 30.0% |
! | TGTTTTCTTTAAGCAAACGT+TGG | - | chr1.2:61133897-61133916 | None:intergenic | 30.0% |
! | TTGTATTTCTATGGTATGTG+CGG | + | chr1.2:61133284-61133303 | MS.gene70812:CDS | 30.0% |
!! | CAGTCAAATTTGTTGTTCTT+TGG | - | chr1.2:61134047-61134066 | None:intergenic | 30.0% |
!! | GACATTGATTTGATACCTTT+GGG | + | chr1.2:61131222-61131241 | MS.gene70812:CDS | 30.0% |
!! | TGACATTGATTTGATACCTT+TGG | + | chr1.2:61131221-61131240 | MS.gene70812:CDS | 30.0% |
!! | TTCTTTGGAGTTGTTTAGAA+AGG | - | chr1.2:61134032-61134051 | None:intergenic | 30.0% |
!!! | CTATGAACTTGTTGGATTTT+GGG | + | chr1.2:61134760-61134779 | MS.gene70812:intron | 30.0% |
AAAATTCCCACCTTCAATGA+TGG | + | chr1.2:61134180-61134199 | MS.gene70812:intron | 35.0% | |
AAACTATCCTAGAGAGCTTA+TGG | + | chr1.2:61132115-61132134 | MS.gene70812:intron | 35.0% | |
AAATACAAAGAACGAGTGCT+TGG | + | chr1.2:61132916-61132935 | MS.gene70812:CDS | 35.0% | |
AACTCCTTCAGAAATCACAA+TGG | + | chr1.2:61134612-61134631 | MS.gene70812:intron | 35.0% | |
AACTTACAGCAAATAGTGTG+AGG | - | chr1.2:61132813-61132832 | None:intergenic | 35.0% | |
AATAAGTCGAAAACAGGCTA+TGG | + | chr1.2:61131788-61131807 | MS.gene70812:intron | 35.0% | |
AATCACAGGCGTTTATAATG+CGG | - | chr1.2:61133148-61133167 | None:intergenic | 35.0% | |
AATTACAGCTTCTGGATGAA+AGG | + | chr1.2:61133573-61133592 | MS.gene70812:intron | 35.0% | |
ATAAGCTGAAAACAGGCTAT+AGG | + | chr1.2:61132140-61132159 | MS.gene70812:intron | 35.0% | |
ATATTGCACTAGAATGTGCA+AGG | - | chr1.2:61134227-61134246 | None:intergenic | 35.0% | |
ATTGGTACGATCATGGAAAT+TGG | - | chr1.2:61135199-61135218 | None:intergenic | 35.0% | |
ATTTATCACATTGATGCTCC+TGG | + | chr1.2:61131682-61131701 | MS.gene70812:CDS | 35.0% | |
CAACCCTCTATAGAAAGAAA+AGG | - | chr1.2:61132318-61132337 | None:intergenic | 35.0% | |
CAATTTGTAAAGGACCTTCA+TGG | + | chr1.2:61132956-61132975 | MS.gene70812:CDS | 35.0% | |
CATGAAGGTCCTTTACAAAT+TGG | - | chr1.2:61132958-61132977 | None:intergenic | 35.0% | |
CTAGGATAGTTTATGAAAGC+AGG | - | chr1.2:61131756-61131775 | None:intergenic | 35.0% | |
CTATTGCAACAACCAGATTA+TGG | + | chr1.2:61133038-61133057 | MS.gene70812:intron | 35.0% | |
CTTATTTCCATAAGCTCTCT+AGG | - | chr1.2:61132125-61132144 | None:intergenic | 35.0% | |
GATAGTTTATGAAAGCAGGA+AGG | - | chr1.2:61131752-61131771 | None:intergenic | 35.0% | |
GCTTAATTCCTAAACTCTCT+TGG | - | chr1.2:61135345-61135364 | None:intergenic | 35.0% | |
GTCTTAAATCAGGTTAAGAG+AGG | + | chr1.2:61132753-61132772 | MS.gene70812:intron | 35.0% | |
TAAATCCATTCAGTCCATGA+AGG | - | chr1.2:61132973-61132992 | None:intergenic | 35.0% | |
TACAATTAAGAGCCACATCT+GGG | - | chr1.2:61131427-61131446 | None:intergenic | 35.0% | |
TACACTAACTGATACCATTG+AGG | - | chr1.2:61131856-61131875 | None:intergenic | 35.0% | |
TACCTCATCTTAAGATTTGG+TGG | - | chr1.2:61134147-61134166 | None:intergenic | 35.0% | |
TCTTGAAGCAGAATGTTTAC+AGG | + | chr1.2:61133228-61133247 | MS.gene70812:intron | 35.0% | |
TGCAAGACACTAATATTTGC+AGG | + | chr1.2:61134968-61134987 | MS.gene70812:CDS | 35.0% | |
TGTAAACATTCTGCTTCAAG+AGG | - | chr1.2:61133229-61133248 | None:intergenic | 35.0% | |
TTAAGAGAGGTTATGTGCTT+GGG | + | chr1.2:61132766-61132785 | MS.gene70812:CDS | 35.0% | |
TTACAATTAAGAGCCACATC+TGG | - | chr1.2:61131428-61131447 | None:intergenic | 35.0% | |
TTTACAACACATACTTGGTC+AGG | + | chr1.2:61135138-61135157 | MS.gene70812:intron | 35.0% | |
TTTATCACATTGATGCTCCT+GGG | + | chr1.2:61131683-61131702 | MS.gene70812:CDS | 35.0% | |
TTTCTTTCTATAGAGGGTTG+AGG | + | chr1.2:61132318-61132337 | MS.gene70812:intron | 35.0% | |
! | AAGAGTGTGTTTAGAATCAC+AGG | - | chr1.2:61133162-61133181 | None:intergenic | 35.0% |
! | ACTTCAATTTAGGGCTTGTT+TGG | - | chr1.2:61132253-61132272 | None:intergenic | 35.0% |
! | CTAAGTGCTTTAAGCTAGTT+TGG | - | chr1.2:61133944-61133963 | None:intergenic | 35.0% |
! | GACTGAATGGATTTACAACA+AGG | + | chr1.2:61132978-61132997 | MS.gene70812:CDS | 35.0% |
! | GTCCCTTTTCTTTCTATAGA+GGG | + | chr1.2:61132312-61132331 | MS.gene70812:intron | 35.0% |
! | GTTTTCTATGCCATCATTGA+AGG | - | chr1.2:61134193-61134212 | None:intergenic | 35.0% |
! | TGTCCCTTTTCTTTCTATAG+AGG | + | chr1.2:61132311-61132330 | MS.gene70812:intron | 35.0% |
! | TTTGATAACTTACCCAGATG+TGG | + | chr1.2:61131412-61131431 | MS.gene70812:CDS | 35.0% |
!! | ACCAATTGAGCGCTTTTTAA+TGG | + | chr1.2:61135213-61135232 | MS.gene70812:CDS | 35.0% |
!! | AGTTTTGGTGTAGAATTTGG+TGG | - | chr1.2:61134250-61134269 | None:intergenic | 35.0% |
!! | ATGAACCAAACTTTAGCTTG+TGG | + | chr1.2:61134737-61134756 | MS.gene70812:intron | 35.0% |
!! | ATTGATTTGATACCTTTGGG+AGG | + | chr1.2:61131225-61131244 | MS.gene70812:CDS | 35.0% |
!! | ATTTTGGGTGTGGACTAATA+TGG | + | chr1.2:61134775-61134794 | MS.gene70812:intron | 35.0% |
!! | CAATTGAGCGCTTTTTAATG+GGG | + | chr1.2:61135215-61135234 | MS.gene70812:CDS | 35.0% |
!! | CAGAAGTGCTTGATTATTTC+GGG | + | chr1.2:61132532-61132551 | MS.gene70812:CDS | 35.0% |
!! | CCAATTGAGCGCTTTTTAAT+GGG | + | chr1.2:61135214-61135233 | MS.gene70812:CDS | 35.0% |
!! | GATTTTGAGGATGACATATC+TGG | - | chr1.2:61134376-61134395 | None:intergenic | 35.0% |
!! | GCAGAAGTGCTTGATTATTT+CGG | + | chr1.2:61132531-61132550 | MS.gene70812:CDS | 35.0% |
!! | GTTGCTATTTGAGTATCTTG+TGG | - | chr1.2:61135110-61135129 | None:intergenic | 35.0% |
!! | TCTGTTTCTGTGCTTATTTG+TGG | + | chr1.2:61131371-61131390 | MS.gene70812:CDS | 35.0% |
!!! | GCTATGAACTTGTTGGATTT+TGG | + | chr1.2:61134759-61134778 | MS.gene70812:intron | 35.0% |
AAGCAAAATGTGGTTGTCTG+TGG | - | chr1.2:61135249-61135268 | None:intergenic | 40.0% | |
AATGTGCAAGGATGCATCAT+AGG | - | chr1.2:61134215-61134234 | None:intergenic | 40.0% | |
AGCCACCAAATCTTAAGATG+AGG | + | chr1.2:61134142-61134161 | MS.gene70812:intron | 40.0% | |
AGTTCTTTAGTCCCTCACTT+AGG | - | chr1.2:61134943-61134962 | None:intergenic | 40.0% | |
ATTGGCACAGTGTATTAGTG+AGG | - | chr1.2:61134489-61134508 | None:intergenic | 40.0% | |
CATAGCCACAAGCTAAAGTT+TGG | - | chr1.2:61134745-61134764 | None:intergenic | 40.0% | |
CTTGATGAGGAAGCAAAATG+TGG | - | chr1.2:61135259-61135278 | None:intergenic | 40.0% | |
GTTAAGAGAGGTTATGTGCT+TGG | + | chr1.2:61132765-61132784 | MS.gene70812:CDS | 40.0% | |
TACACCGTTGTTGTGTGAAA+TGG | - | chr1.2:61133734-61133753 | None:intergenic | 40.0% | |
TAGTCTAGGCTAGTAGCTAA+TGG | + | chr1.2:61131881-61131900 | MS.gene70812:intron | 40.0% | |
TAGTGAGGAATAAGATAGGG+AGG | - | chr1.2:61134474-61134493 | None:intergenic | 40.0% | |
TATAACTAGCATAACCAGGC+CGG | + | chr1.2:61134092-61134111 | MS.gene70812:intron | 40.0% | |
TCTATGCCATCATTGAAGGT+GGG | - | chr1.2:61134189-61134208 | None:intergenic | 40.0% | |
TCTGGGTAAGTTATCAAAGC+AGG | - | chr1.2:61131410-61131429 | None:intergenic | 40.0% | |
TGAGCCATTTCACACAACAA+CGG | + | chr1.2:61133727-61133746 | MS.gene70812:intron | 40.0% | |
TGTATTTGTGAGCTTGACTC+CGG | - | chr1.2:61134114-61134133 | None:intergenic | 40.0% | |
TGTCTAATGTCTGCAGACAT+AGG | + | chr1.2:61132279-61132298 | MS.gene70812:intron | 40.0% | |
TTACACCGTGAAAAGGATTG+AGG | + | chr1.2:61131995-61132014 | MS.gene70812:intron | 40.0% | |
TTAGGTTTCAACACGAACAC+GGG | - | chr1.2:61135383-61135402 | None:intergenic | 40.0% | |
TTCCAGTTTACACCGTGAAA+AGG | + | chr1.2:61131988-61132007 | MS.gene70812:intron | 40.0% | |
TTCTATGCCATCATTGAAGG+TGG | - | chr1.2:61134190-61134209 | None:intergenic | 40.0% | |
TTGATTACCTTTCCTCCCAA+AGG | - | chr1.2:61131240-61131259 | None:intergenic | 40.0% | |
TTTGCTTCCTCATCAAGCAA+CGG | + | chr1.2:61135262-61135281 | MS.gene70812:CDS | 40.0% | |
! | AGATGAGGTATTCCAACTTG+TGG | + | chr1.2:61134157-61134176 | MS.gene70812:intron | 40.0% |
! | AGCTATCTGCAGAATTTTGC+AGG | + | chr1.2:61133976-61133995 | MS.gene70812:intron | 40.0% |
! | AGGAATTGGTTCATAAGAGG+TGG | - | chr1.2:61134535-61134554 | None:intergenic | 40.0% |
! | ATAAAAGCATGAAAGTGGGG+AGG | - | chr1.2:61133007-61133026 | None:intergenic | 40.0% |
! | ATCCTTTTCACGGTGTAAAC+TGG | - | chr1.2:61131993-61132012 | None:intergenic | 40.0% |
! | CAGGTTTTCTACATTCATGC+AGG | + | chr1.2:61133247-61133266 | MS.gene70812:intron | 40.0% |
! | GAATTTTCAAAGCTTGAGGG+AGG | - | chr1.2:61133704-61133723 | None:intergenic | 40.0% |
! | GCAGAATTTTGCAGGAAAAG+AGG | + | chr1.2:61133984-61134003 | MS.gene70812:intron | 40.0% |
! | GCAGTAGCATGCAATAGTTT+TGG | - | chr1.2:61134265-61134284 | None:intergenic | 40.0% |
! | TACAGAGGTATGTTGTGAGA+CGG | - | chr1.2:61134439-61134458 | None:intergenic | 40.0% |
! | TCGAGGAATTGGTTCATAAG+AGG | - | chr1.2:61134538-61134557 | None:intergenic | 40.0% |
! | TTTGATACCTTTGGGAGGAA+AGG | + | chr1.2:61131230-61131249 | MS.gene70812:CDS | 40.0% |
!! | ACTATGTAGCATCGGTGAAT+AGG | - | chr1.2:61132572-61132591 | None:intergenic | 40.0% |
!! | CCCATTAAAAAGCGCTCAAT+TGG | - | chr1.2:61135217-61135236 | None:intergenic | 40.0% |
!! | CTTAAGATTTGGTGGCTGAT+TGG | - | chr1.2:61134139-61134158 | None:intergenic | 40.0% |
!! | GTTTTTGTTTGGAGGTTTGC+AGG | + | chr1.2:61131322-61131341 | MS.gene70812:intron | 40.0% |
!!! | AACTTGTTGGATTTTGGGTG+TGG | + | chr1.2:61134765-61134784 | MS.gene70812:intron | 40.0% |
AATGCTGAACTGCTTGCAGA+AGG | + | chr1.2:61134912-61134931 | MS.gene70812:intron | 45.0% | |
AGATGAACCACTGCTTTGTG+TGG | + | chr1.2:61132488-61132507 | MS.gene70812:CDS | 45.0% | |
AGCATCAAAGAAGCTGCTTC+TGG | - | chr1.2:61131649-61131668 | None:intergenic | 45.0% | |
AGTCGAAAACAGGCTATGGA+TGG | + | chr1.2:61131792-61131811 | MS.gene70812:intron | 45.0% | |
CTTGCAGCGTTACTTCAGTA+AGG | + | chr1.2:61133325-61133344 | MS.gene70812:CDS | 45.0% | |
GAGCTTAGATGCAGTATCCA+GGG | + | chr1.2:61133429-61133448 | MS.gene70812:CDS | 45.0% | |
GCGAATGAATACTGCCAAGT+AGG | + | chr1.2:61134817-61134836 | MS.gene70812:intron | 45.0% | |
GCTTGTGGCTATGAACTTGT+TGG | + | chr1.2:61134752-61134771 | MS.gene70812:intron | 45.0% | |
TACTGAAGTAACGCTGCAAG+AGG | - | chr1.2:61133325-61133344 | None:intergenic | 45.0% | |
TGCTACTGCTGCAACATACT+TGG | + | chr1.2:61134276-61134295 | MS.gene70812:intron | 45.0% | |
TGGTATGTGCGGTTTACTGA+AGG | + | chr1.2:61133295-61133314 | MS.gene70812:CDS | 45.0% | |
TGTTGAACCGTTGCTTGATG+AGG | - | chr1.2:61135272-61135291 | None:intergenic | 45.0% | |
TTACATCTGATTCTGCTCCC+TGG | - | chr1.2:61133449-61133468 | None:intergenic | 45.0% | |
TTCCTAAACTCTCTTGGGAG+AGG | - | chr1.2:61135339-61135358 | None:intergenic | 45.0% | |
! | AAGGACCTTCATGGACTGAA+TGG | + | chr1.2:61132965-61132984 | MS.gene70812:CDS | 45.0% |
! | CAAAATCTGCGCACTTGTTG+AGG | + | chr1.2:61135045-61135064 | MS.gene70812:CDS | 45.0% |
! | CAGGACCTCAATCCTTTTCA+CGG | - | chr1.2:61132003-61132022 | None:intergenic | 45.0% |
! | CTGCAAGCAGTTCAGCATTT+TGG | - | chr1.2:61134911-61134930 | None:intergenic | 45.0% |
! | GGTGGGAATTTTCCACAAGT+TGG | - | chr1.2:61134172-61134191 | None:intergenic | 45.0% |
!! | GAGCGCTTTTTAATGGGGTT+TGG | + | chr1.2:61135220-61135239 | MS.gene70812:CDS | 45.0% |
!! | GCAGATGTGTCTTGTTTCCA+GGG | + | chr1.2:61131610-61131629 | MS.gene70812:intron | 45.0% |
!! | TCTGGTGTGTTGACTATGTG+TGG | - | chr1.2:61134358-61134377 | None:intergenic | 45.0% |
!! | TGCAGATGTGTCTTGTTTCC+AGG | + | chr1.2:61131609-61131628 | MS.gene70812:intron | 45.0% |
AAAGCTTGAGGGAGGAGTAG+AGG | - | chr1.2:61133696-61133715 | None:intergenic | 50.0% | |
AGGTCATCCACACAAAGCAG+TGG | - | chr1.2:61132498-61132517 | None:intergenic | 50.0% | |
ATGTGCTTGGGAGTAACAGC+TGG | + | chr1.2:61132778-61132797 | MS.gene70812:CDS | 50.0% | |
CTCCTCTCCCAAGAGAGTTT+AGG | + | chr1.2:61135334-61135353 | MS.gene70812:CDS | 50.0% | |
CTTCTGCAACCTGATCAGCT+AGG | - | chr1.2:61132518-61132537 | None:intergenic | 50.0% | |
CTTGGTCAGGTTCAAGCTTG+TGG | + | chr1.2:61135151-61135170 | MS.gene70812:intron | 50.0% | |
GCGCTCAATTGGTACGATCA+TGG | - | chr1.2:61135206-61135225 | None:intergenic | 50.0% | |
GCTCTCACAAACAGCCTCAA+TGG | + | chr1.2:61131839-61131858 | MS.gene70812:intron | 50.0% | |
GGAGCTTAGATGCAGTATCC+AGG | + | chr1.2:61133428-61133447 | MS.gene70812:intron | 50.0% | |
TGTGGATGACCTAGCTGATC+AGG | + | chr1.2:61132506-61132525 | MS.gene70812:CDS | 50.0% | |
! | ACACGAACACGGGTTCTGAT+AGG | - | chr1.2:61135373-61135392 | None:intergenic | 50.0% |
! | AGAAGGCACGACCTAAGTGA+GGG | + | chr1.2:61134929-61134948 | MS.gene70812:intron | 50.0% |
CATTGATGCTCCTGGGCATG+AGG | + | chr1.2:61131690-61131709 | MS.gene70812:CDS | 55.0% | |
CCACGATTGCATGGCGAGAA+GGG | - | chr1.2:61135306-61135325 | None:intergenic | 55.0% | |
CTCTCTTGGGAGAGGAGTTC+TGG | - | chr1.2:61135331-61135350 | None:intergenic | 55.0% | |
CTGGACAGAACAACAGACCC+TGG | - | chr1.2:61131630-61131649 | None:intergenic | 55.0% | |
GGTTCAAGCTTGTGGCTCAC+TGG | + | chr1.2:61135159-61135178 | MS.gene70812:intron | 55.0% | |
! | CAGAAGGCACGACCTAAGTG+AGG | + | chr1.2:61134928-61134947 | MS.gene70812:intron | 55.0% |
!! | GTTCTGGTGCCACGATTGCA+TGG | - | chr1.2:61135315-61135334 | None:intergenic | 55.0% |
CCCTTCTCGCCATGCAATCG+TGG | + | chr1.2:61135303-61135322 | MS.gene70812:CDS | 60.0% | |
GATGCTCCTGGGCATGAGGT+CGG | + | chr1.2:61131694-61131713 | MS.gene70812:intron | 60.0% | |
GCCACGATTGCATGGCGAGA+AGG | - | chr1.2:61135307-61135326 | None:intergenic | 60.0% | |
TTGTGAGCTTGACTCCGGCC+TGG | - | chr1.2:61134109-61134128 | None:intergenic | 60.0% | |
GCATGGCGAGAAGGGCTTGC+TGG | - | chr1.2:61135298-61135317 | None:intergenic | 65.0% | |
GCGACACCGACCTCATGCCC+AGG | - | chr1.2:61131703-61131722 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 61131192 | 61135402 | 61131192 | ID=MS.gene70812 |
chr1.2 | mRNA | 61131192 | 61135402 | 61131192 | ID=MS.gene70812.t1;Parent=MS.gene70812 |
chr1.2 | exon | 61131192 | 61131251 | 61131192 | ID=MS.gene70812.t1.exon1;Parent=MS.gene70812.t1 |
chr1.2 | CDS | 61131192 | 61131251 | 61131192 | ID=cds.MS.gene70812.t1;Parent=MS.gene70812.t1 |
chr1.2 | exon | 61131344 | 61131443 | 61131344 | ID=MS.gene70812.t1.exon2;Parent=MS.gene70812.t1 |
chr1.2 | CDS | 61131344 | 61131443 | 61131344 | ID=cds.MS.gene70812.t1;Parent=MS.gene70812.t1 |
chr1.2 | exon | 61131614 | 61131711 | 61131614 | ID=MS.gene70812.t1.exon3;Parent=MS.gene70812.t1 |
chr1.2 | CDS | 61131614 | 61131711 | 61131614 | ID=cds.MS.gene70812.t1;Parent=MS.gene70812.t1 |
chr1.2 | exon | 61132465 | 61132553 | 61132465 | ID=MS.gene70812.t1.exon4;Parent=MS.gene70812.t1 |
chr1.2 | CDS | 61132465 | 61132553 | 61132465 | ID=cds.MS.gene70812.t1;Parent=MS.gene70812.t1 |
chr1.2 | exon | 61132765 | 61132825 | 61132765 | ID=MS.gene70812.t1.exon5;Parent=MS.gene70812.t1 |
chr1.2 | CDS | 61132765 | 61132825 | 61132765 | ID=cds.MS.gene70812.t1;Parent=MS.gene70812.t1 |
chr1.2 | exon | 61132913 | 61132999 | 61132913 | ID=MS.gene70812.t1.exon6;Parent=MS.gene70812.t1 |
chr1.2 | CDS | 61132913 | 61132999 | 61132913 | ID=cds.MS.gene70812.t1;Parent=MS.gene70812.t1 |
chr1.2 | exon | 61133269 | 61133346 | 61133269 | ID=MS.gene70812.t1.exon7;Parent=MS.gene70812.t1 |
chr1.2 | CDS | 61133269 | 61133346 | 61133269 | ID=cds.MS.gene70812.t1;Parent=MS.gene70812.t1 |
chr1.2 | exon | 61133429 | 61133485 | 61133429 | ID=MS.gene70812.t1.exon8;Parent=MS.gene70812.t1 |
chr1.2 | CDS | 61133429 | 61133485 | 61133429 | ID=cds.MS.gene70812.t1;Parent=MS.gene70812.t1 |
chr1.2 | exon | 61133581 | 61133636 | 61133581 | ID=MS.gene70812.t1.exon9;Parent=MS.gene70812.t1 |
chr1.2 | CDS | 61133581 | 61133636 | 61133581 | ID=cds.MS.gene70812.t1;Parent=MS.gene70812.t1 |
chr1.2 | exon | 61134931 | 61135066 | 61134931 | ID=MS.gene70812.t1.exon10;Parent=MS.gene70812.t1 |
chr1.2 | CDS | 61134931 | 61135066 | 61134931 | ID=cds.MS.gene70812.t1;Parent=MS.gene70812.t1 |
chr1.2 | exon | 61135160 | 61135402 | 61135160 | ID=MS.gene70812.t1.exon11;Parent=MS.gene70812.t1 |
chr1.2 | CDS | 61135160 | 61135402 | 61135160 | ID=cds.MS.gene70812.t1;Parent=MS.gene70812.t1 |
Gene Sequence |
Protein sequence |