Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70976.t1 | XP_003626313.1 | 95.6 | 274 | 12 | 0 | 1 | 274 | 1 | 274 | 1.40E-146 | 528.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70976.t1 | Q86JM5 | 33.9 | 245 | 157 | 4 | 20 | 262 | 37 | 278 | 1.0e-23 | 112.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70976.t1 | Q2HTN1 | 95.6 | 274 | 12 | 0 | 1 | 274 | 1 | 274 | 1.0e-146 | 528.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050333 | MS.gene70976 | 0.80079 | 1.22E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70976.t1 | MTR_7g113780 | 95.620 | 274 | 12 | 0 | 1 | 274 | 1 | 274 | 0.0 | 528 |
| MS.gene70976.t1 | MTR_8g078200 | 33.929 | 280 | 169 | 3 | 9 | 274 | 16 | 293 | 5.61e-42 | 146 |
| MS.gene70976.t1 | MTR_3g111610 | 33.922 | 283 | 163 | 6 | 9 | 274 | 15 | 290 | 5.98e-41 | 143 |
| MS.gene70976.t1 | MTR_5g019330 | 33.446 | 296 | 161 | 8 | 1 | 273 | 1 | 283 | 9.98e-38 | 135 |
| MS.gene70976.t1 | MTR_1g021915 | 33.500 | 200 | 117 | 4 | 9 | 194 | 9 | 206 | 2.24e-22 | 93.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene70976.t1 | AT3G06470 | 56.934 | 274 | 106 | 5 | 9 | 273 | 8 | 278 | 4.07e-100 | 294 |
| MS.gene70976.t1 | AT3G06460 | 51.341 | 261 | 119 | 4 | 9 | 263 | 8 | 266 | 3.99e-85 | 256 |
| MS.gene70976.t1 | AT1G75000 | 31.058 | 293 | 153 | 7 | 10 | 270 | 5 | 280 | 1.62e-36 | 131 |
| MS.gene70976.t1 | AT4G36830 | 28.328 | 293 | 187 | 7 | 1 | 274 | 1 | 289 | 3.17e-30 | 115 |
| MS.gene70976.t1 | AT4G36830 | 29.921 | 254 | 157 | 6 | 9 | 245 | 9 | 258 | 4.31e-25 | 102 |
Find 106 sgRNAs with CRISPR-Local
Find 107 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATGGTCCCTTCTTCTTT+TGG | 0.123328 | 3.3:+44264882 | MS.gene70976:CDS |
| TCCGGTGGTGGTGGATGCTC+TGG | 0.244745 | 3.3:+44265235 | MS.gene70976:CDS |
| CTCCATCCTCTCCCTCATTA+TGG | 0.310997 | 3.3:+44264778 | MS.gene70976:CDS |
| GAGAGTGAGGGAGAGATAAA+AGG | 0.313559 | 3.3:-44264681 | None:intergenic |
| CATGTGAAATTTAGAATGTT+TGG | 0.317423 | 3.3:-44264605 | None:intergenic |
| CTCTCCCTCATTATGGCTAT+TGG | 0.337974 | 3.3:+44264785 | MS.gene70976:CDS |
| GGATAGGTGGGAGAGGGAAG+AGG | 0.353829 | 3.3:-44264709 | None:intergenic |
| TCCCAATCATGTGTTATCTA+TGG | 0.356723 | 3.3:+44265017 | MS.gene70976:CDS |
| GAGTTGGTAAGAAGTGCAAT+AGG | 0.367356 | 3.3:-44265064 | None:intergenic |
| ATGGTGGAGCGGAGGAGGTT+AGG | 0.384639 | 3.3:-44264836 | None:intergenic |
| GGATGGAGAGGATGAGGTTG+TGG | 0.388690 | 3.3:-44264763 | None:intergenic |
| GGAGGTTAGGAGTGTGGGTT+AGG | 0.388815 | 3.3:-44264823 | None:intergenic |
| GTGGGAGAGGGAAGAGGAGA+AGG | 0.389465 | 3.3:-44264703 | None:intergenic |
| CAAAAGAAGAAGGGACCATT+TGG | 0.392612 | 3.3:-44264881 | None:intergenic |
| GGAAGTGAGGTGGGATAGGT+GGG | 0.405482 | 3.3:-44264721 | None:intergenic |
| TGGTGGATGCTCTGGGATGA+AGG | 0.407237 | 3.3:+44265243 | MS.gene70976:CDS |
| CTTTATTATCACTTCGGATC+CGG | 0.421923 | 3.3:+44265217 | MS.gene70976:CDS |
| GTTAGGAGTGTGGGTTAGGA+TGG | 0.422091 | 3.3:-44264819 | None:intergenic |
| GAGGAATGAGAGACGTTTGA+TGG | 0.423143 | 3.3:-44264972 | None:intergenic |
| GATGCTCTGGGATGAAGGCT+TGG | 0.437263 | 3.3:+44265248 | MS.gene70976:CDS |
| AGCGGAGGAGGTTAGGAGTG+TGG | 0.438380 | 3.3:-44264829 | None:intergenic |
| AGCCATAGATAACACATGAT+TGG | 0.439169 | 3.3:-44265019 | None:intergenic |
| GGAAGAGGAGAAGGAGAGTG+AGG | 0.444740 | 3.3:-44264694 | None:intergenic |
| CACTTCGGATCCGGTGGTGG+TGG | 0.447681 | 3.3:+44265226 | MS.gene70976:CDS |
| TGGAGGAAGTGAGGTGGGAT+AGG | 0.449819 | 3.3:-44264725 | None:intergenic |
| GGGAGAGGATGGAGAGGATG+AGG | 0.450488 | 3.3:-44264769 | None:intergenic |
| GTGTTCAGCTTTGCCGTCTC+CGG | 0.450503 | 3.3:+44265187 | MS.gene70976:CDS |
| TTGGCAGAATCCTTCAACAT+TGG | 0.451434 | 3.3:+44264570 | MS.gene70976:CDS |
| GGACCATTTGGAGGGGTATG+AGG | 0.451616 | 3.3:-44264869 | None:intergenic |
| GCCATAGATAACACATGATT+GGG | 0.452793 | 3.3:-44265018 | None:intergenic |
| AGGAAGTGAGGTGGGATAGG+TGG | 0.456887 | 3.3:-44264722 | None:intergenic |
| GCGGAGGAGGTTAGGAGTGT+GGG | 0.459178 | 3.3:-44264828 | None:intergenic |
| TGGAAAGAGAGAGGAACAAA+AGG | 0.460332 | 3.3:-44264655 | None:intergenic |
| GGAAGCAGATGGTGGAGCGG+AGG | 0.464652 | 3.3:-44264844 | None:intergenic |
| AGCAGATGGTGGAGCGGAGG+AGG | 0.466781 | 3.3:-44264841 | None:intergenic |
| TGTGGAGTGCAGTGAAGGGT+TGG | 0.467302 | 3.3:-44264745 | None:intergenic |
| CCGGTGGTGGTGGATGCTCT+GGG | 0.474001 | 3.3:+44265236 | MS.gene70976:CDS |
| CCATTTGGAGGGGTATGAGG+AGG | 0.474427 | 3.3:-44264866 | None:intergenic |
| TGAACACGAACTGAACAATC+TGG | 0.475700 | 3.3:-44265171 | None:intergenic |
| TACTACTTCCTCACCACTGT+TGG | 0.476064 | 3.3:+44265112 | MS.gene70976:CDS |
| TGTTGAAGGATTCTGCCAAT+GGG | 0.479832 | 3.3:-44264566 | None:intergenic |
| GTGGGTTAGGATGGTGAGGG+AGG | 0.481729 | 3.3:-44264810 | None:intergenic |
| TATCACTTCGGATCCGGTGG+TGG | 0.497768 | 3.3:+44265223 | MS.gene70976:CDS |
| CTTATGCTTTATTATCACTT+CGG | 0.498009 | 3.3:+44265211 | MS.gene70976:CDS |
| AGGAACAAAAGGGATGAGGC+TGG | 0.499237 | 3.3:-44264644 | None:intergenic |
| GAGGTGGGATAGGTGGGAGA+GGG | 0.500599 | 3.3:-44264715 | None:intergenic |
| GATGAGGCTGGAGTGTGAGG+AGG | 0.502414 | 3.3:-44264632 | None:intergenic |
| TGAGGTGGGATAGGTGGGAG+AGG | 0.507625 | 3.3:-44264716 | None:intergenic |
| GAGGGAGAGATAAAAGGCTA+TGG | 0.508066 | 3.3:-44264675 | None:intergenic |
| GAAGAGGAGAAGGAGAGTGA+GGG | 0.511361 | 3.3:-44264693 | None:intergenic |
| AGGGTTGGAGGAAGTGAGGT+GGG | 0.513336 | 3.3:-44264730 | None:intergenic |
| CCTCCTCATACCCCTCCAAA+TGG | 0.515262 | 3.3:+44264866 | MS.gene70976:CDS |
| GATGTAGGCCCAAAAGAAGA+AGG | 0.519086 | 3.3:-44264891 | None:intergenic |
| GAGGGAAGCAGATGGTGGAG+CGG | 0.519215 | 3.3:-44264847 | None:intergenic |
| GAGGTTGTGGAGTGCAGTGA+AGG | 0.521843 | 3.3:-44264750 | None:intergenic |
| CCCAGAGCATCCACCACCAC+CGG | 0.521985 | 3.3:-44265236 | None:intergenic |
| AGCCATAATGAGGGAGAGGA+TGG | 0.527649 | 3.3:-44264780 | None:intergenic |
| ATGTTGAAGGATTCTGCCAA+TGG | 0.528628 | 3.3:-44264567 | None:intergenic |
| AAGGGTTGGAGGAAGTGAGG+TGG | 0.529521 | 3.3:-44264731 | None:intergenic |
| AGTTGGTAAGAAGTGCAATA+GGG | 0.530353 | 3.3:-44265063 | None:intergenic |
| GAGTGTGGGTTAGGATGGTG+AGG | 0.530952 | 3.3:-44264814 | None:intergenic |
| TCGGTAACGACGCGTTTCCA+CGG | 0.536456 | 3.3:-44265145 | None:intergenic |
| GGTAAACTAGCCAATGTTGA+AGG | 0.541678 | 3.3:-44264580 | None:intergenic |
| GGAGTGCAGTGAAGGGTTGG+AGG | 0.543841 | 3.3:-44264742 | None:intergenic |
| ATGAGGCTGGAGTGTGAGGA+GGG | 0.554548 | 3.3:-44264631 | None:intergenic |
| GTGAAGGGTTGGAGGAAGTG+AGG | 0.554705 | 3.3:-44264734 | None:intergenic |
| GTGATAATAAAGCATAAGAC+CGG | 0.555355 | 3.3:-44265206 | None:intergenic |
| TTTCGAGAGGTAGAAGATGT+AGG | 0.563009 | 3.3:-44264906 | None:intergenic |
| GGAAAGAGAGAGGAACAAAA+GGG | 0.565658 | 3.3:-44264654 | None:intergenic |
| CAATAGCCATAATGAGGGAG+AGG | 0.566959 | 3.3:-44264784 | None:intergenic |
| AGGGATGAGGCTGGAGTGTG+AGG | 0.567634 | 3.3:-44264635 | None:intergenic |
| AGGTGCCAATAGCCATAATG+AGG | 0.568133 | 3.3:-44264790 | None:intergenic |
| GACGTTTGATGGATCTTGAG+AGG | 0.571177 | 3.3:-44264961 | None:intergenic |
| TGATTGGGACGGTGGAATGA+TGG | 0.571858 | 3.3:-44265003 | None:intergenic |
| ATAAAGCATAAGACCGGAGA+CGG | 0.574571 | 3.3:-44265200 | None:intergenic |
| CAAACATTCTAAATTTCACA+TGG | 0.578086 | 3.3:+44264606 | MS.gene70976:CDS |
| TGAAATTTAGAATGTTTGGA+TGG | 0.579054 | 3.3:-44264601 | None:intergenic |
| AAGAAGAAGGGACCATTTGG+AGG | 0.579622 | 3.3:-44264878 | None:intergenic |
| TATTATCACTTCGGATCCGG+TGG | 0.582897 | 3.3:+44265220 | MS.gene70976:CDS |
| GGTATGAGGAGGGAAGCAGA+TGG | 0.584509 | 3.3:-44264855 | None:intergenic |
| AGCTGAATGGAAAACCCCAT+TGG | 0.589954 | 3.3:+44264551 | None:intergenic |
| CGACGCGTTTCCACGGCGGT+CGG | 0.590079 | 3.3:-44265138 | None:intergenic |
| AGAGAGGAACAAAAGGGATG+AGG | 0.592520 | 3.3:-44264648 | None:intergenic |
| ATGAGGAGGGAAGCAGATGG+TGG | 0.597449 | 3.3:-44264852 | None:intergenic |
| CATTTGGAGGGGTATGAGGA+GGG | 0.598396 | 3.3:-44264865 | None:intergenic |
| AGAAGAAGGGACCATTTGGA+GGG | 0.610561 | 3.3:-44264877 | None:intergenic |
| AGGTTGTGGAGTGCAGTGAA+GGG | 0.618556 | 3.3:-44264749 | None:intergenic |
| ATAACACATGATTGGGACGG+TGG | 0.620196 | 3.3:-44265011 | None:intergenic |
| AAAAGGCTATGGAAAGAGAG+AGG | 0.627374 | 3.3:-44264664 | None:intergenic |
| GTCGGATTCCAACAGTGGTG+AGG | 0.628146 | 3.3:-44265120 | None:intergenic |
| TGAATTCAAGATATTTCGAG+AGG | 0.629871 | 3.3:-44264919 | None:intergenic |
| CGGTGGAATGATGGTACACG+TGG | 0.631074 | 3.3:-44264994 | None:intergenic |
| ATGTAGGCCCAAAAGAAGAA+GGG | 0.632371 | 3.3:-44264890 | None:intergenic |
| AGTGTGGGTTAGGATGGTGA+GGG | 0.632987 | 3.3:-44264813 | None:intergenic |
| CGGCGGTCGGATTCCAACAG+TGG | 0.641832 | 3.3:-44265125 | None:intergenic |
| TAATGAGGGAGAGGATGGAG+AGG | 0.644404 | 3.3:-44264775 | None:intergenic |
| GTTGAAGGATTCTGCCAATG+GGG | 0.650167 | 3.3:-44264565 | None:intergenic |
| GAACTGAACAATCTGGCAGT+CGG | 0.662736 | 3.3:-44265164 | None:intergenic |
| GATGACGTGGACAGATGAGT+TGG | 0.664978 | 3.3:-44265080 | None:intergenic |
| TGGAATGATGGTACACGTGG+AGG | 0.666407 | 3.3:-44264991 | None:intergenic |
| TAGATAACACATGATTGGGA+CGG | 0.671340 | 3.3:-44265014 | None:intergenic |
| GAAGAAGGGACCATTTGGAG+GGG | 0.676652 | 3.3:-44264876 | None:intergenic |
| GGTGCCAATAGCCATAATGA+GGG | 0.679843 | 3.3:-44264789 | None:intergenic |
| AGTAAGAGTACATGATGACG+TGG | 0.708386 | 3.3:-44265093 | None:intergenic |
| CTGTTGGAATCCGACCGCCG+TGG | 0.731632 | 3.3:+44265128 | MS.gene70976:CDS |
| GTAACGACGCGTTTCCACGG+CGG | 0.765126 | 3.3:-44265142 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | CAAACATTCTAAATTTCACA+TGG | + | chr3.3:44264606-44264625 | MS.gene70976:CDS | 25.0% |
| !! | CATGTGAAATTTAGAATGTT+TGG | - | chr3.3:44264608-44264627 | None:intergenic | 25.0% |
| !! | CTTATGCTTTATTATCACTT+CGG | + | chr3.3:44265211-44265230 | MS.gene70976:CDS | 25.0% |
| !! | TGAAATTTAGAATGTTTGGA+TGG | - | chr3.3:44264604-44264623 | None:intergenic | 25.0% |
| !!! | TGTTTTTAATGCTTCTCTTT+TGG | + | chr3.3:44265282-44265301 | MS.gene70976:CDS | 25.0% |
| GTGATAATAAAGCATAAGAC+CGG | - | chr3.3:44265209-44265228 | None:intergenic | 30.0% | |
| TGAATTCAAGATATTTCGAG+AGG | - | chr3.3:44264922-44264941 | None:intergenic | 30.0% | |
| AGCCATAGATAACACATGAT+TGG | - | chr3.3:44265022-44265041 | None:intergenic | 35.0% | |
| CTTTATTATCACTTCGGATC+CGG | + | chr3.3:44265217-44265236 | MS.gene70976:CDS | 35.0% | |
| GCCATAGATAACACATGATT+GGG | - | chr3.3:44265021-44265040 | None:intergenic | 35.0% | |
| TAGATAACACATGATTGGGA+CGG | - | chr3.3:44265017-44265036 | None:intergenic | 35.0% | |
| TCCCAATCATGTGTTATCTA+TGG | + | chr3.3:44265017-44265036 | MS.gene70976:CDS | 35.0% | |
| ! | AAATGGTCCCTTCTTCTTTT+GGG | + | chr3.3:44264883-44264902 | MS.gene70976:CDS | 35.0% |
| !! | AGTTGGTAAGAAGTGCAATA+GGG | - | chr3.3:44265066-44265085 | None:intergenic | 35.0% |
| AAAAGGCTATGGAAAGAGAG+AGG | - | chr3.3:44264667-44264686 | None:intergenic | 40.0% | |
| ATAAAGCATAAGACCGGAGA+CGG | - | chr3.3:44265203-44265222 | None:intergenic | 40.0% | |
| ATGTAGGCCCAAAAGAAGAA+GGG | - | chr3.3:44264893-44264912 | None:intergenic | 40.0% | |
| ATGTTGAAGGATTCTGCCAA+TGG | - | chr3.3:44264570-44264589 | None:intergenic | 40.0% | |
| CAAAAGAAGAAGGGACCATT+TGG | - | chr3.3:44264884-44264903 | None:intergenic | 40.0% | |
| GGAAAGAGAGAGGAACAAAA+GGG | - | chr3.3:44264657-44264676 | None:intergenic | 40.0% | |
| GGTAAACTAGCCAATGTTGA+AGG | - | chr3.3:44264583-44264602 | None:intergenic | 40.0% | |
| TGAACACGAACTGAACAATC+TGG | - | chr3.3:44265174-44265193 | None:intergenic | 40.0% | |
| TGGAAAGAGAGAGGAACAAA+AGG | - | chr3.3:44264658-44264677 | None:intergenic | 40.0% | |
| TGTTGAAGGATTCTGCCAAT+GGG | - | chr3.3:44264569-44264588 | None:intergenic | 40.0% | |
| TTGGCAGAATCCTTCAACAT+TGG | + | chr3.3:44264570-44264589 | MS.gene70976:CDS | 40.0% | |
| TTTCGAGAGGTAGAAGATGT+AGG | - | chr3.3:44264909-44264928 | None:intergenic | 40.0% | |
| ! | AGTAAGAGTACATGATGACG+TGG | - | chr3.3:44265096-44265115 | None:intergenic | 40.0% |
| ! | CAAATGGTCCCTTCTTCTTT+TGG | + | chr3.3:44264882-44264901 | MS.gene70976:CDS | 40.0% |
| !! | GAGTTGGTAAGAAGTGCAAT+AGG | - | chr3.3:44265067-44265086 | None:intergenic | 40.0% |
| AAGAAGAAGGGACCATTTGG+AGG | - | chr3.3:44264881-44264900 | None:intergenic | 45.0% | |
| AGAAGAAGGGACCATTTGGA+GGG | - | chr3.3:44264880-44264899 | None:intergenic | 45.0% | |
| AGAGAGGAACAAAAGGGATG+AGG | - | chr3.3:44264651-44264670 | None:intergenic | 45.0% | |
| AGGTGCCAATAGCCATAATG+AGG | - | chr3.3:44264793-44264812 | None:intergenic | 45.0% | |
| ATAACACATGATTGGGACGG+TGG | - | chr3.3:44265014-44265033 | None:intergenic | 45.0% | |
| CAATAGCCATAATGAGGGAG+AGG | - | chr3.3:44264787-44264806 | None:intergenic | 45.0% | |
| CTCTCCCTCATTATGGCTAT+TGG | + | chr3.3:44264785-44264804 | MS.gene70976:CDS | 45.0% | |
| GAACTGAACAATCTGGCAGT+CGG | - | chr3.3:44265167-44265186 | None:intergenic | 45.0% | |
| GAGAGTGAGGGAGAGATAAA+AGG | - | chr3.3:44264684-44264703 | None:intergenic | 45.0% | |
| GAGGAATGAGAGACGTTTGA+TGG | - | chr3.3:44264975-44264994 | None:intergenic | 45.0% | |
| GAGGGAGAGATAAAAGGCTA+TGG | - | chr3.3:44264678-44264697 | None:intergenic | 45.0% | |
| GATGTAGGCCCAAAAGAAGA+AGG | - | chr3.3:44264894-44264913 | None:intergenic | 45.0% | |
| GGTGCCAATAGCCATAATGA+GGG | - | chr3.3:44264792-44264811 | None:intergenic | 45.0% | |
| GTTGAAGGATTCTGCCAATG+GGG | - | chr3.3:44264568-44264587 | None:intergenic | 45.0% | |
| TACTACTTCCTCACCACTGT+TGG | + | chr3.3:44265112-44265131 | MS.gene70976:CDS | 45.0% | |
| TATTATCACTTCGGATCCGG+TGG | + | chr3.3:44265220-44265239 | MS.gene70976:CDS | 45.0% | |
| ! | GACGTTTGATGGATCTTGAG+AGG | - | chr3.3:44264964-44264983 | None:intergenic | 45.0% |
| AGCCATAATGAGGGAGAGGA+TGG | - | chr3.3:44264783-44264802 | None:intergenic | 50.0% | |
| AGGAACAAAAGGGATGAGGC+TGG | - | chr3.3:44264647-44264666 | None:intergenic | 50.0% | |
| AGGTTGTGGAGTGCAGTGAA+GGG | - | chr3.3:44264752-44264771 | None:intergenic | 50.0% | |
| CTCCATCCTCTCCCTCATTA+TGG | + | chr3.3:44264778-44264797 | MS.gene70976:CDS | 50.0% | |
| GAAGAAGGGACCATTTGGAG+GGG | - | chr3.3:44264879-44264898 | None:intergenic | 50.0% | |
| GAAGAGGAGAAGGAGAGTGA+GGG | - | chr3.3:44264696-44264715 | None:intergenic | 50.0% | |
| GATGACGTGGACAGATGAGT+TGG | - | chr3.3:44265083-44265102 | None:intergenic | 50.0% | |
| TAATGAGGGAGAGGATGGAG+AGG | - | chr3.3:44264778-44264797 | None:intergenic | 50.0% | |
| TGATTGGGACGGTGGAATGA+TGG | - | chr3.3:44265006-44265025 | None:intergenic | 50.0% | |
| TGGAATGATGGTACACGTGG+AGG | - | chr3.3:44264994-44265013 | None:intergenic | 50.0% | |
| ! | CATTTGGAGGGGTATGAGGA+GGG | - | chr3.3:44264868-44264887 | None:intergenic | 50.0% |
| !! | AGTGTGGGTTAGGATGGTGA+GGG | - | chr3.3:44264816-44264835 | None:intergenic | 50.0% |
| !! | GTTAGGAGTGTGGGTTAGGA+TGG | - | chr3.3:44264822-44264841 | None:intergenic | 50.0% |
| AAGGGTTGGAGGAAGTGAGG+TGG | - | chr3.3:44264734-44264753 | None:intergenic | 55.0% | |
| AGGAAGTGAGGTGGGATAGG+TGG | - | chr3.3:44264725-44264744 | None:intergenic | 55.0% | |
| AGGGTTGGAGGAAGTGAGGT+GGG | - | chr3.3:44264733-44264752 | None:intergenic | 55.0% | |
| ATGAGGAGGGAAGCAGATGG+TGG | - | chr3.3:44264855-44264874 | None:intergenic | 55.0% | |
| ATGAGGCTGGAGTGTGAGGA+GGG | - | chr3.3:44264634-44264653 | None:intergenic | 55.0% | |
| CCTCCTCATACCCCTCCAAA+TGG | + | chr3.3:44264866-44264885 | MS.gene70976:CDS | 55.0% | |
| CGGTGGAATGATGGTACACG+TGG | - | chr3.3:44264997-44265016 | None:intergenic | 55.0% | |
| GAGGTTGTGGAGTGCAGTGA+AGG | - | chr3.3:44264753-44264772 | None:intergenic | 55.0% | |
| GGAAGAGGAGAAGGAGAGTG+AGG | - | chr3.3:44264697-44264716 | None:intergenic | 55.0% | |
| GGAAGTGAGGTGGGATAGGT+GGG | - | chr3.3:44264724-44264743 | None:intergenic | 55.0% | |
| GGATGGAGAGGATGAGGTTG+TGG | - | chr3.3:44264766-44264785 | None:intergenic | 55.0% | |
| GGTATGAGGAGGGAAGCAGA+TGG | - | chr3.3:44264858-44264877 | None:intergenic | 55.0% | |
| GTCGGATTCCAACAGTGGTG+AGG | - | chr3.3:44265123-44265142 | None:intergenic | 55.0% | |
| GTGAAGGGTTGGAGGAAGTG+AGG | - | chr3.3:44264737-44264756 | None:intergenic | 55.0% | |
| GTGTTCAGCTTTGCCGTCTC+CGG | + | chr3.3:44265187-44265206 | MS.gene70976:CDS | 55.0% | |
| TATCACTTCGGATCCGGTGG+TGG | + | chr3.3:44265223-44265242 | MS.gene70976:CDS | 55.0% | |
| TCGGTAACGACGCGTTTCCA+CGG | - | chr3.3:44265148-44265167 | None:intergenic | 55.0% | |
| TGGAGGAAGTGAGGTGGGAT+AGG | - | chr3.3:44264728-44264747 | None:intergenic | 55.0% | |
| TGTGGAGTGCAGTGAAGGGT+TGG | - | chr3.3:44264748-44264767 | None:intergenic | 55.0% | |
| ! | CCATTTGGAGGGGTATGAGG+AGG | - | chr3.3:44264869-44264888 | None:intergenic | 55.0% |
| ! | GGACCATTTGGAGGGGTATG+AGG | - | chr3.3:44264872-44264891 | None:intergenic | 55.0% |
| ! | GGAGGTTAGGAGTGTGGGTT+AGG | - | chr3.3:44264826-44264845 | None:intergenic | 55.0% |
| !! | GAGTGTGGGTTAGGATGGTG+AGG | - | chr3.3:44264817-44264836 | None:intergenic | 55.0% |
| !! | GATGCTCTGGGATGAAGGCT+TGG | + | chr3.3:44265248-44265267 | MS.gene70976:CDS | 55.0% |
| !! | TGGTGGATGCTCTGGGATGA+AGG | + | chr3.3:44265243-44265262 | MS.gene70976:CDS | 55.0% |
| AGCGGAGGAGGTTAGGAGTG+TGG | - | chr3.3:44264832-44264851 | None:intergenic | 60.0% | |
| AGGGATGAGGCTGGAGTGTG+AGG | - | chr3.3:44264638-44264657 | None:intergenic | 60.0% | |
| GAGGTGGGATAGGTGGGAGA+GGG | - | chr3.3:44264718-44264737 | None:intergenic | 60.0% | |
| GATGAGGCTGGAGTGTGAGG+AGG | - | chr3.3:44264635-44264654 | None:intergenic | 60.0% | |
| GGAGTGCAGTGAAGGGTTGG+AGG | - | chr3.3:44264745-44264764 | None:intergenic | 60.0% | |
| GGATAGGTGGGAGAGGGAAG+AGG | - | chr3.3:44264712-44264731 | None:intergenic | 60.0% | |
| GGGAGAGGATGGAGAGGATG+AGG | - | chr3.3:44264772-44264791 | None:intergenic | 60.0% | |
| GTAACGACGCGTTTCCACGG+CGG | - | chr3.3:44265145-44265164 | None:intergenic | 60.0% | |
| GTGGGAGAGGGAAGAGGAGA+AGG | - | chr3.3:44264706-44264725 | None:intergenic | 60.0% | |
| TGAGGTGGGATAGGTGGGAG+AGG | - | chr3.3:44264719-44264738 | None:intergenic | 60.0% | |
| ! | ATGGTGGAGCGGAGGAGGTT+AGG | - | chr3.3:44264839-44264858 | None:intergenic | 60.0% |
| ! | GCGGAGGAGGTTAGGAGTGT+GGG | - | chr3.3:44264831-44264850 | None:intergenic | 60.0% |
| !! | GAGGGAAGCAGATGGTGGAG+CGG | - | chr3.3:44264850-44264869 | None:intergenic | 60.0% |
| !! | GTGGGTTAGGATGGTGAGGG+AGG | - | chr3.3:44264813-44264832 | None:intergenic | 60.0% |
| CGGCGGTCGGATTCCAACAG+TGG | - | chr3.3:44265128-44265147 | None:intergenic | 65.0% | |
| CTGTTGGAATCCGACCGCCG+TGG | + | chr3.3:44265128-44265147 | MS.gene70976:CDS | 65.0% | |
| ! | CACTTCGGATCCGGTGGTGG+TGG | + | chr3.3:44265226-44265245 | MS.gene70976:CDS | 65.0% |
| ! | CCCAGAGCATCCACCACCAC+CGG | - | chr3.3:44265239-44265258 | None:intergenic | 65.0% |
| !! | AGCAGATGGTGGAGCGGAGG+AGG | - | chr3.3:44264844-44264863 | None:intergenic | 65.0% |
| !! | CCGGTGGTGGTGGATGCTCT+GGG | + | chr3.3:44265236-44265255 | MS.gene70976:CDS | 65.0% |
| !! | GGAAGCAGATGGTGGAGCGG+AGG | - | chr3.3:44264847-44264866 | None:intergenic | 65.0% |
| !! | TCCGGTGGTGGTGGATGCTC+TGG | + | chr3.3:44265235-44265254 | MS.gene70976:CDS | 65.0% |
| CGACGCGTTTCCACGGCGGT+CGG | - | chr3.3:44265141-44265160 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 44264557 | 44265381 | 44264557 | ID=MS.gene70976 |
| chr3.3 | mRNA | 44264557 | 44265381 | 44264557 | ID=MS.gene70976.t1;Parent=MS.gene70976 |
| chr3.3 | exon | 44264557 | 44265381 | 44264557 | ID=MS.gene70976.t1.exon1;Parent=MS.gene70976.t1 |
| chr3.3 | CDS | 44264557 | 44265381 | 44264557 | ID=cds.MS.gene70976.t1;Parent=MS.gene70976.t1 |
| Gene Sequence |
| Protein sequence |
