Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71138.t1 | KYP31853.1 | 46.1 | 280 | 24 | 3 | 122 | 275 | 1036 | 1314 | 6.60E-51 | 211.1 |
| MS.gene71138.t1 | KYP31853.1 | 85 | 60 | 9 | 0 | 1 | 60 | 385 | 444 | 2.70E-20 | 109.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71138.t1 | P10978 | 36.0 | 275 | 52 | 2 | 120 | 270 | 1051 | 1325 | 4.2e-38 | 159.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71138.t1 | A0A151QNH6 | 46.1 | 280 | 24 | 3 | 122 | 275 | 1036 | 1314 | 4.8e-51 | 211.1 |
| MS.gene71138.t1 | A0A151QNH6 | 85.0 | 60 | 9 | 0 | 1 | 60 | 385 | 444 | 2.0e-20 | 109.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058881 | MS.gene71138 | 0.853413 | 2.43E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71138.t1 | MTR_3g036800 | 83.077 | 65 | 7 | 1 | 66 | 130 | 1 | 61 | 4.10e-30 | 109 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 56 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCATGTATTGGTTGATTT+TGG | 0.180428 | 4.1:+56685482 | None:intergenic |
| AACTATCCTTTGATTAGTTT+GGG | 0.217519 | 4.1:+56683763 | None:intergenic |
| AAACTATCCTTTGATTAGTT+TGG | 0.231148 | 4.1:+56683762 | None:intergenic |
| TGCTCATCTCTTCTTTCTCT+TGG | 0.271304 | 4.1:+56684447 | None:intergenic |
| ATCAGGCTCCTCCATTTGAT+TGG | 0.274441 | 4.1:+56685513 | None:intergenic |
| CAAAACTCTATCTTCTCTTT+TGG | 0.321800 | 4.1:+56683813 | None:intergenic |
| GCCATCTGTTCTTCATGTAT+TGG | 0.324289 | 4.1:+56685472 | None:intergenic |
| GATCATTGCTCGTGGTAAAA+AGG | 0.325907 | 4.1:-56686565 | MS.gene71138:CDS |
| CCACATGAGCGAGAAAAGTT+TGG | 0.348947 | 4.1:-56686448 | MS.gene71138:CDS |
| TCTTTCTCTTGGTCATTCTC+AGG | 0.376250 | 4.1:+56684458 | None:intergenic |
| TCAGGCTCCTCCATTTGATT+GGG | 0.390966 | 4.1:+56685514 | None:intergenic |
| AGTGGTTGACCCTTGATGTT+TGG | 0.395213 | 4.1:+56686402 | None:intergenic |
| GCTACCCACTGCTGAAGAAT+AGG | 0.395959 | 4.1:+56684418 | None:intergenic |
| AGGCTCTCTGTATGTTATGC+AGG | 0.433753 | 4.1:-56686541 | MS.gene71138:CDS |
| ACATCGATGTGAGGTATCAT+TGG | 0.435433 | 4.1:-56683923 | MS.gene71138:intron |
| CTGTCTGATCTTCTCAATTG+AGG | 0.448874 | 4.1:+56685403 | None:intergenic |
| CATATCTGCTCCATTGTCAT+TGG | 0.455158 | 4.1:+56683851 | None:intergenic |
| AACACTGGAGTGCTGTGAAA+TGG | 0.463543 | 4.1:-56684310 | MS.gene71138:CDS |
| TCACGATCATAATTCATTTG+AGG | 0.467438 | 4.1:+56685550 | None:intergenic |
| CCTGTGCATGTTCCGCTACC+TGG | 0.472224 | 4.1:-56684509 | MS.gene71138:CDS |
| CTACCCACTGCTGAAGAATA+GGG | 0.473406 | 4.1:+56684419 | None:intergenic |
| ATCCTTTGATTAGTTTGGGG+TGG | 0.486951 | 4.1:+56683767 | None:intergenic |
| GCTAACAGAACCCAATCAAA+TGG | 0.489956 | 4.1:-56685524 | MS.gene71138:CDS |
| TGCAGACCATGGCGTACATA+AGG | 0.500035 | 4.1:+56684396 | None:intergenic |
| GAATCATCTTCCAAACATCA+AGG | 0.513638 | 4.1:-56686412 | MS.gene71138:CDS |
| TTGTAAAGAAGCTGCAGGCT+TGG | 0.530111 | 4.1:-56683793 | MS.gene71138:CDS |
| ATCTCAAGAAAGTTCTTGAA+AGG | 0.540106 | 4.1:-56684553 | MS.gene71138:CDS |
| CCTACAGCATAACCGATGTC+TGG | 0.542961 | 4.1:+56684368 | None:intergenic |
| CCAGACATCGGTTATGCTGT+AGG | 0.556943 | 4.1:-56684368 | MS.gene71138:CDS |
| GTCTGGCCTCGTGCAGACCA+TGG | 0.563338 | 4.1:+56684385 | None:intergenic |
| GAACTGTGGCACAAACGACT+TGG | 0.565258 | 4.1:-56686471 | MS.gene71138:CDS |
| TGATGATGATGATGTTGAGA+TGG | 0.567364 | 4.1:-56685434 | MS.gene71138:CDS |
| ACCAATACATGAAGAACAGA+TGG | 0.568672 | 4.1:-56685473 | MS.gene71138:CDS |
| CCAGGTAGCGGAACATGCAC+AGG | 0.572979 | 4.1:+56684509 | None:intergenic |
| TCATTGGATACGTGATGTGT+TGG | 0.576055 | 4.1:-56683907 | MS.gene71138:CDS |
| AAAATTCATACCAATGACAA+TGG | 0.582534 | 4.1:-56683861 | MS.gene71138:CDS |
| TTACTGAGTTTCATATGACC+AGG | 0.584762 | 4.1:+56684491 | None:intergenic |
| AATCATCTTCCAAACATCAA+GGG | 0.591800 | 4.1:-56686411 | MS.gene71138:intron |
| GGCTCTCTGTATGTTATGCA+GGG | 0.593689 | 4.1:-56686540 | MS.gene71138:CDS |
| GTGCCCTATTCTTCAGCAGT+GGG | 0.600613 | 4.1:-56684422 | MS.gene71138:CDS |
| GGTGCCCTATTCTTCAGCAG+TGG | 0.613159 | 4.1:-56684423 | MS.gene71138:CDS |
| ACTATCCTTTGATTAGTTTG+GGG | 0.614975 | 4.1:+56683764 | None:intergenic |
| GGGTAGCCTTATGTACGCCA+TGG | 0.620781 | 4.1:-56684402 | MS.gene71138:CDS |
| CAAACCCAGGAAAAGAACAC+TGG | 0.623987 | 4.1:-56684325 | MS.gene71138:CDS |
| AGAGAAAGAAGAGATGAGCA+AGG | 0.630245 | 4.1:-56684444 | MS.gene71138:CDS |
| GATGATGATGATGTTGAGAT+GGG | 0.632595 | 4.1:-56685433 | MS.gene71138:CDS |
| GTCTGCACGAGGCCAGACAT+CGG | 0.643214 | 4.1:-56684380 | MS.gene71138:CDS |
| AACAGAACCCAATCAAATGG+AGG | 0.659776 | 4.1:-56685521 | MS.gene71138:CDS |
| AGTAGATTCCTATCAAACCC+AGG | 0.660954 | 4.1:-56684338 | MS.gene71138:CDS |
| TATGCAGGGAAAGATAAACA+AGG | 0.666815 | 4.1:-56686526 | MS.gene71138:CDS |
| ATGCAGGGAAAGATAAACAA+GGG | 0.675651 | 4.1:-56686525 | MS.gene71138:CDS |
| AGTTTCATATGACCAGGTAG+CGG | 0.678545 | 4.1:+56684497 | None:intergenic |
| GGAAGCATGATCATTGCTCG+TGG | 0.693757 | 4.1:-56686573 | None:intergenic |
| TGTACGCCATGGTCTGCACG+AGG | 0.697121 | 4.1:-56684391 | MS.gene71138:CDS |
| GTGCTGTGAAATGGATACTG+AGG | 0.727600 | 4.1:-56684301 | MS.gene71138:intron |
| AAGACATGAGCAAAGAACTG+TGG | 0.731330 | 4.1:-56686485 | MS.gene71138:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AAAATTCATACCAATGACAA+TGG | - | chr4.1:56686482-56686501 | MS.gene71138:CDS | 25.0% |
| ! | AAATGTTTAAGAACAGACAA+TGG | - | chr4.1:56684238-56684257 | MS.gene71138:intron | 25.0% |
| ! | TGAATATGTAAATTTCACTG+AGG | - | chr4.1:56684996-56685015 | MS.gene71138:intron | 25.0% |
| ! | TGCAAAAGTAATCAAATATC+CGG | + | chr4.1:56686180-56686199 | None:intergenic | 25.0% |
| ! | TTTGTGAAGAACTATGAAAA+TGG | - | chr4.1:56685573-56685592 | MS.gene71138:intron | 25.0% |
| !! | AAAACTTCCCAAATCATTTT+GGG | - | chr4.1:56684411-56684430 | MS.gene71138:CDS | 25.0% |
| !! | AACATACAACAAAAGTATGA+TGG | + | chr4.1:56685604-56685623 | None:intergenic | 25.0% |
| !!! | ATATTTGATTACTTTTGCAG+GGG | - | chr4.1:56686181-56686200 | MS.gene71138:intron | 25.0% |
| !!! | GATATTTGATTACTTTTGCA+GGG | - | chr4.1:56686180-56686199 | MS.gene71138:intron | 25.0% |
| !!! | TTTTGAAGAAATATTCTCAC+CGG | - | chr4.1:56685266-56685285 | MS.gene71138:intron | 25.0% |
| AAAATTACCAGATGGAAAGA+GGG | - | chr4.1:56685134-56685153 | MS.gene71138:intron | 30.0% | |
| AATCATCTTCCAAACATCAA+GGG | - | chr4.1:56683932-56683951 | MS.gene71138:intron | 30.0% | |
| ACTATTGTGGTAAACAATTC+AGG | - | chr4.1:56684760-56684779 | MS.gene71138:intron | 30.0% | |
| AGACAACCAATAAGGAAAAA+TGG | - | chr4.1:56685052-56685071 | MS.gene71138:intron | 30.0% | |
| ATCTCAAGAAAGTTCTTGAA+AGG | - | chr4.1:56685790-56685809 | MS.gene71138:intron | 30.0% | |
| CTATTGTGGTAAACAATTCA+GGG | - | chr4.1:56684761-56684780 | MS.gene71138:intron | 30.0% | |
| GAACATATCTTTCTTGATTC+TGG | + | chr4.1:56686334-56686353 | None:intergenic | 30.0% | |
| GTTAAAACAGCATTCTTACA+TGG | - | chr4.1:56685363-56685382 | MS.gene71138:intron | 30.0% | |
| TAAAATTACCAGATGGAAAG+AGG | - | chr4.1:56685133-56685152 | MS.gene71138:intron | 30.0% | |
| TATGTAAATTTCACTGAGGA+AGG | - | chr4.1:56685000-56685019 | MS.gene71138:intron | 30.0% | |
| TATTCCATGAGATCTACAAT+AGG | + | chr4.1:56684290-56684309 | None:intergenic | 30.0% | |
| TATTGTGGTAAACAATTCAG+GGG | - | chr4.1:56684762-56684781 | MS.gene71138:intron | 30.0% | |
| TCACGATCATAATTCATTTG+AGG | + | chr4.1:56684796-56684815 | None:intergenic | 30.0% | |
| TTGTTTACCACAATAGTCTT+TGG | + | chr4.1:56684757-56684776 | None:intergenic | 30.0% | |
| ! | AAACTTCCCAAATCATTTTG+GGG | - | chr4.1:56684412-56684431 | MS.gene71138:CDS | 30.0% |
| ! | CAAAACTCTATCTTCTCTTT+TGG | + | chr4.1:56686533-56686552 | None:intergenic | 30.0% |
| ! | CAAAACTTCCCAAATCATTT+TGG | - | chr4.1:56684410-56684429 | MS.gene71138:CDS | 30.0% |
| ! | TTTTCTTGAATCTACATCTC+CGG | + | chr4.1:56686150-56686169 | None:intergenic | 30.0% |
| !! | ATGAACTTGGCTTTAGATTA+TGG | - | chr4.1:56684647-56684666 | MS.gene71138:intron | 30.0% |
| !! | CAGAGTATCTTTTCAAAGAT+CGG | - | chr4.1:56684000-56684019 | MS.gene71138:intron | 30.0% |
| !! | GGATATTTGATTACTTTTGC+AGG | - | chr4.1:56686179-56686198 | MS.gene71138:intron | 30.0% |
| !! | TATTTGATTACTTTTGCAGG+GGG | - | chr4.1:56686182-56686201 | MS.gene71138:intron | 30.0% |
| !! | TGAACTTGGCTTTAGATTAT+GGG | - | chr4.1:56684648-56684667 | MS.gene71138:intron | 30.0% |
| !!! | CTTCATGTATTGGTTGATTT+TGG | + | chr4.1:56684864-56684883 | None:intergenic | 30.0% |
| AAAAAGTTCCTGCAAGAGTT+AGG | - | chr4.1:56686308-56686327 | MS.gene71138:intron | 35.0% | |
| AAAATGTTGTGAACCACCAA+GGG | + | chr4.1:56684095-56684114 | None:intergenic | 35.0% | |
| AAAGACTCTCAAATGACCAT+AGG | + | chr4.1:56684536-56684555 | None:intergenic | 35.0% | |
| AAAGCTAGATGCTAAGATGA+AGG | - | chr4.1:56684597-56684616 | MS.gene71138:intron | 35.0% | |
| AACTTCTTGTACCATTGTCT+TGG | + | chr4.1:56685498-56685517 | None:intergenic | 35.0% | |
| ACAATTCGTGCTTTGTATCT+GGG | + | chr4.1:56685213-56685232 | None:intergenic | 35.0% | |
| ACCAATACATGAAGAACAGA+TGG | - | chr4.1:56684870-56684889 | MS.gene71138:intron | 35.0% | |
| ACTTGATCTTTCGTCTTCAA+TGG | + | chr4.1:56684160-56684179 | None:intergenic | 35.0% | |
| AGAATTCGACATACCATTCA+AGG | - | chr4.1:56686390-56686409 | MS.gene71138:intron | 35.0% | |
| AGTAATCAAATATCCGGATG+TGG | + | chr4.1:56686174-56686193 | None:intergenic | 35.0% | |
| ATACCAGATGAAGTATGGTA+TGG | - | chr4.1:56684499-56684518 | MS.gene71138:CDS | 35.0% | |
| ATCGTTCAAGAAGAATGTTG+TGG | - | chr4.1:56685751-56685770 | MS.gene71138:intron | 35.0% | |
| ATCTACAATAGGCTGCAAAT+GGG | + | chr4.1:56684279-56684298 | None:intergenic | 35.0% | |
| ATGCAGGGAAAGATAAACAA+GGG | - | chr4.1:56683818-56683837 | MS.gene71138:CDS | 35.0% | |
| ATGTTTGCTCTACATCTGAA+AGG | - | chr4.1:56684068-56684087 | MS.gene71138:intron | 35.0% | |
| ATTGTGGTAAACAATTCAGG+GGG | - | chr4.1:56684763-56684782 | MS.gene71138:intron | 35.0% | |
| CATCTGAATGAACAAGATCT+AGG | + | chr4.1:56684051-56684070 | None:intergenic | 35.0% | |
| CCAATAAGGAAAAATGGTTG+CGG | - | chr4.1:56685058-56685077 | MS.gene71138:intron | 35.0% | |
| CCATATAGATTTCTTCCTCT+AGG | + | chr4.1:56685392-56685411 | None:intergenic | 35.0% | |
| CCATCAAAAAGATACTTCTC+AGG | - | chr4.1:56684973-56684992 | MS.gene71138:intron | 35.0% | |
| CCTAGAGGAAGAAATCTATA+TGG | - | chr4.1:56685389-56685408 | MS.gene71138:CDS | 35.0% | |
| CGCTTGAAGAAAAGTCTATA+CGG | - | chr4.1:56685459-56685478 | MS.gene71138:CDS | 35.0% | |
| GAATCATCTTCCAAACATCA+AGG | - | chr4.1:56683931-56683950 | MS.gene71138:intron | 35.0% | |
| GATTCAAGAAAATCCACATC+CGG | - | chr4.1:56686158-56686177 | MS.gene71138:intron | 35.0% | |
| GCTTATCGTTGGAAAAGATA+AGG | - | chr4.1:56685632-56685651 | MS.gene71138:intron | 35.0% | |
| TAAGAAGCCAAAGACTATTG+TGG | - | chr4.1:56684747-56684766 | MS.gene71138:intron | 35.0% | |
| TATGCAGGGAAAGATAAACA+AGG | - | chr4.1:56683817-56683836 | MS.gene71138:CDS | 35.0% | |
| TATGGTCATTTGAGAGTCTT+TGG | - | chr4.1:56684535-56684554 | MS.gene71138:CDS | 35.0% | |
| TCTCCATTTAAAGGTCTTGA+AGG | + | chr4.1:56684478-56684497 | None:intergenic | 35.0% | |
| TCTCCTTCAAGACCTTTAAA+TGG | - | chr4.1:56684472-56684491 | MS.gene71138:CDS | 35.0% | |
| TCTGGTATCTCTCCATTTAA+AGG | + | chr4.1:56684487-56684506 | None:intergenic | 35.0% | |
| TGACTTTCTCTACAATCGTT+CGG | + | chr4.1:56684372-56684391 | None:intergenic | 35.0% | |
| TGGTTATGTAGATGCTGATA+TGG | - | chr4.1:56686124-56686143 | MS.gene71138:intron | 35.0% | |
| TGTTTAAGAACAGACAATGG+TGG | - | chr4.1:56684241-56684260 | MS.gene71138:intron | 35.0% | |
| TTACTGAGTTTCATATGACC+AGG | + | chr4.1:56685855-56685874 | None:intergenic | 35.0% | |
| TTTCCATACCATACTTCATC+TGG | + | chr4.1:56684505-56684524 | None:intergenic | 35.0% | |
| ! | AATCAACGCCTTTCTTTTGA+TGG | + | chr4.1:56685248-56685267 | None:intergenic | 35.0% |
| ! | ACGATCACTCTAGAAAAGTA+TGG | - | chr4.1:56684128-56684147 | MS.gene71138:intron | 35.0% |
| ! | AGCTTTGCTCTTTCATCTTT+TGG | + | chr4.1:56684583-56684602 | None:intergenic | 35.0% |
| ! | CGATCACTCTAGAAAAGTAT+GGG | - | chr4.1:56684129-56684148 | MS.gene71138:intron | 35.0% |
| ! | CTAAAGCCAAGTTCATCTTT+TGG | + | chr4.1:56684643-56684662 | None:intergenic | 35.0% |
| ! | GATGATGATGATGTTGAGAT+GGG | - | chr4.1:56684910-56684929 | MS.gene71138:intron | 35.0% |
| ! | GCCAAAACATAAGCACTTTT+TGG | + | chr4.1:56686084-56686103 | None:intergenic | 35.0% |
| ! | TCCTTTGCTATGAAGGATTT+GGG | - | chr4.1:56685690-56685709 | MS.gene71138:intron | 35.0% |
| ! | TGATGATGATGATGTTGAGA+TGG | - | chr4.1:56684909-56684928 | MS.gene71138:intron | 35.0% |
| ! | TGGATACTGAGGTATCTAAA+AGG | - | chr4.1:56686053-56686072 | MS.gene71138:intron | 35.0% |
| ! | TTCCATCTGGTAATTTTACC+AGG | + | chr4.1:56685131-56685150 | None:intergenic | 35.0% |
| ! | TTCCTTATTGGTTGTCTCTA+TGG | + | chr4.1:56685049-56685068 | None:intergenic | 35.0% |
| !! | AGAGGGCATTGAAAAATAAG+TGG | - | chr4.1:56685151-56685170 | MS.gene71138:intron | 35.0% |
| !! | GAGGGCATTGAAAAATAAGT+GGG | - | chr4.1:56685152-56685171 | MS.gene71138:intron | 35.0% |
| !! | GTTGATGATATGCTTATCGT+TGG | - | chr4.1:56685621-56685640 | MS.gene71138:intron | 35.0% |
| !! | TGATTTTGGTCTATCTGATC+AGG | + | chr4.1:56684850-56684869 | None:intergenic | 35.0% |
| !!! | AAGTGCTTATGTTTTGGCAA+TGG | - | chr4.1:56686086-56686105 | MS.gene71138:intron | 35.0% |
| !!! | CCTGAGAAGTATCTTTTTGA+TGG | + | chr4.1:56684976-56684995 | None:intergenic | 35.0% |
| !!! | GCCAAAAAGTGCTTATGTTT+TGG | - | chr4.1:56686080-56686099 | MS.gene71138:intron | 35.0% |
| AAAGCACGAATTGTCGTGAA+GGG | - | chr4.1:56685219-56685238 | MS.gene71138:intron | 40.0% | |
| AACAGAACCCAATCAAATGG+AGG | - | chr4.1:56684822-56684841 | MS.gene71138:intron | 40.0% | |
| AAGACATGAGCAAAGAACTG+TGG | - | chr4.1:56683858-56683877 | MS.gene71138:CDS | 40.0% | |
| AAGTCTATACGGCTTAAAGC+AGG | - | chr4.1:56685470-56685489 | MS.gene71138:CDS | 40.0% | |
| AATCGTTCGGTTCATCCTTT+CGG | + | chr4.1:56684359-56684378 | None:intergenic | 40.0% | |
| AATGGAAATCAAATGCTCGC+TGG | - | chr4.1:56686104-56686123 | MS.gene71138:intron | 40.0% | |
| ACATCCATTAGAGCAATCCT+TGG | - | chr4.1:56685300-56685319 | MS.gene71138:intron | 40.0% | |
| ACCCAAATCCTTCATAGCAA+AGG | + | chr4.1:56685694-56685713 | None:intergenic | 40.0% | |
| ACGTCTTTGTGAAGTTGTGT+TGG | + | chr4.1:56685536-56685555 | None:intergenic | 40.0% | |
| AGAAGAGATGCAGTCTCTAA+AGG | - | chr4.1:56685089-56685108 | MS.gene71138:intron | 40.0% | |
| AGAGAAAGAAGAGATGAGCA+AGG | - | chr4.1:56685899-56685918 | MS.gene71138:intron | 40.0% | |
| AGCCATAGAGACAACCAATA+AGG | - | chr4.1:56685044-56685063 | MS.gene71138:intron | 40.0% | |
| AGTAGATTCCTATCAAACCC+AGG | - | chr4.1:56686005-56686024 | MS.gene71138:intron | 40.0% | |
| AGTTCTTCACAAACACGCAA+TGG | + | chr4.1:56685566-56685585 | None:intergenic | 40.0% | |
| AGTTTCATATGACCAGGTAG+CGG | + | chr4.1:56685849-56685868 | None:intergenic | 40.0% | |
| ATCTATATGGAGCAACCTGA+AGG | - | chr4.1:56685402-56685421 | MS.gene71138:CDS | 40.0% | |
| ATTCTTACATGGAGACCTAG+AGG | - | chr4.1:56685374-56685393 | MS.gene71138:CDS | 40.0% | |
| ATTGCTCGTGGTAAAAAGGA+AGG | - | chr4.1:56683782-56683801 | MS.gene71138:CDS | 40.0% | |
| CAAAATGTTGTGAACCACCA+AGG | + | chr4.1:56684096-56684115 | None:intergenic | 40.0% | |
| CAATTCGTGCTTTGTATCTG+GGG | + | chr4.1:56685212-56685231 | None:intergenic | 40.0% | |
| CATATCTGCTCCATTGTCAT+TGG | + | chr4.1:56686495-56686514 | None:intergenic | 40.0% | |
| CGTCTTTGTGAAGTTGTGTT+GGG | + | chr4.1:56685535-56685554 | None:intergenic | 40.0% | |
| CTGTCTGATCTTCTCAATTG+AGG | + | chr4.1:56684943-56684962 | None:intergenic | 40.0% | |
| GACAATTCGTGCTTTGTATC+TGG | + | chr4.1:56685214-56685233 | None:intergenic | 40.0% | |
| GACCTGGTAAAATTACCAGA+TGG | - | chr4.1:56685126-56685145 | MS.gene71138:intron | 40.0% | |
| GACGAAAGATCAAGTTCTTC+AGG | - | chr4.1:56684165-56684184 | MS.gene71138:intron | 40.0% | |
| GAGAGATACCAGATGAAGTA+TGG | - | chr4.1:56684494-56684513 | MS.gene71138:CDS | 40.0% | |
| GATCATTGCTCGTGGTAAAA+AGG | - | chr4.1:56683778-56683797 | MS.gene71138:CDS | 40.0% | |
| GATCTACAATAGGCTGCAAA+TGG | + | chr4.1:56684280-56684299 | None:intergenic | 40.0% | |
| GCCATCTGTTCTTCATGTAT+TGG | + | chr4.1:56684874-56684893 | None:intergenic | 40.0% | |
| GCTAACAGAACCCAATCAAA+TGG | - | chr4.1:56684819-56684838 | MS.gene71138:intron | 40.0% | |
| GCTTCACCCCAAAATGATTT+GGG | + | chr4.1:56684421-56684440 | None:intergenic | 40.0% | |
| GCTTCTTAGATTGAATGTCG+TGG | + | chr4.1:56684735-56684754 | None:intergenic | 40.0% | |
| GGTTCACCAAAAGATGAACT+TGG | - | chr4.1:56684634-56684653 | MS.gene71138:intron | 40.0% | |
| TAGACCAAGGATTGCTCTAA+TGG | + | chr4.1:56685307-56685326 | None:intergenic | 40.0% | |
| TATGGAAAGAAAGCCTCCTA+TGG | - | chr4.1:56684517-56684536 | MS.gene71138:CDS | 40.0% | |
| TATGTAGATGCTGATATGGC+CGG | - | chr4.1:56686128-56686147 | MS.gene71138:intron | 40.0% | |
| TCATTGGATACGTGATGTGT+TGG | - | chr4.1:56686436-56686455 | MS.gene71138:CDS | 40.0% | |
| TCTTTCTCTTGGTCATTCTC+AGG | + | chr4.1:56685888-56685907 | None:intergenic | 40.0% | |
| TGAAGAAATATTCTCACCGG+TGG | - | chr4.1:56685269-56685288 | MS.gene71138:intron | 40.0% | |
| TGCTCATCTCTTCTTTCTCT+TGG | + | chr4.1:56685899-56685918 | None:intergenic | 40.0% | |
| TGCTTCACCCCAAAATGATT+TGG | + | chr4.1:56684422-56684441 | None:intergenic | 40.0% | |
| ! | ACATCGATGTGAGGTATCAT+TGG | - | chr4.1:56686420-56686439 | MS.gene71138:CDS | 40.0% |
| ! | ATGAAGGAGTGCATATACCT+TGG | - | chr4.1:56684613-56684632 | MS.gene71138:intron | 40.0% |
| ! | GACAATGGTGGAGAGTATAT+AGG | - | chr4.1:56684253-56684272 | MS.gene71138:intron | 40.0% |
| ! | GTCCTTTGCTATGAAGGATT+TGG | - | chr4.1:56685689-56685708 | MS.gene71138:intron | 40.0% |
| ! | GTTCATCTTTTGGTGAACCA+AGG | + | chr4.1:56684633-56684652 | None:intergenic | 40.0% |
| ! | GTTCTTTTCCTGGGTTTGAT+AGG | + | chr4.1:56686016-56686035 | None:intergenic | 40.0% |
| ! | TCTAGAGTGATCGTCAATGA+AGG | + | chr4.1:56684122-56684141 | None:intergenic | 40.0% |
| !! | CCGCAACCATTTTTCCTTAT+TGG | + | chr4.1:56685061-56685080 | None:intergenic | 40.0% |
| !! | CTCTTAAGAAAGCATTGAGC+AGG | - | chr4.1:56685667-56685686 | MS.gene71138:intron | 40.0% |
| !! | GAGTTTTGTAAAGAAGCTGC+AGG | - | chr4.1:56686545-56686564 | MS.gene71138:CDS | 40.0% |
| AAACATCAAGGGTCAACCAC+TGG | - | chr4.1:56683943-56683962 | MS.gene71138:intron | 45.0% | |
| AAGCACGAATTGTCGTGAAG+GGG | - | chr4.1:56685220-56685239 | MS.gene71138:intron | 45.0% | |
| AAGGTTGTAAGGAGATCCTG+TGG | - | chr4.1:56686282-56686301 | MS.gene71138:intron | 45.0% | |
| AGACTGCATCTCTTCTTCCA+TGG | + | chr4.1:56685085-56685104 | None:intergenic | 45.0% | |
| AGATGAATGGAGTAGCCGAA+AGG | - | chr4.1:56684341-56684360 | MS.gene71138:CDS | 45.0% | |
| AGGAGAACCTCAAAGCTTCA+TGG | - | chr4.1:56685020-56685039 | MS.gene71138:intron | 45.0% | |
| AGGCTCTCTGTATGTTATGC+AGG | - | chr4.1:56683802-56683821 | MS.gene71138:CDS | 45.0% | |
| AGTGGTTGACCCTTGATGTT+TGG | + | chr4.1:56683944-56683963 | None:intergenic | 45.0% | |
| ATCAGGCTCCTCCATTTGAT+TGG | + | chr4.1:56684833-56684852 | None:intergenic | 45.0% | |
| ATGGATGTCATCTTCACCAC+CGG | + | chr4.1:56685288-56685307 | None:intergenic | 45.0% | |
| ATGGCTTCCATGAAGCTTTG+AGG | + | chr4.1:56685030-56685049 | None:intergenic | 45.0% | |
| CAAACCCAGGAAAAGAACAC+TGG | - | chr4.1:56686018-56686037 | MS.gene71138:intron | 45.0% | |
| CAAAGCACGAATTGTCGTGA+AGG | - | chr4.1:56685218-56685237 | MS.gene71138:intron | 45.0% | |
| CAATCTTCACAGGATTCCAG+TGG | + | chr4.1:56683962-56683981 | None:intergenic | 45.0% | |
| CCACATGAGCGAGAAAAGTT+TGG | - | chr4.1:56683895-56683914 | MS.gene71138:CDS | 45.0% | |
| CCATTCATCTGAGGAGTCTT+GGG | + | chr4.1:56684331-56684350 | None:intergenic | 45.0% | |
| CGAACCATCTTCTTAGTAGC+AGG | + | chr4.1:56684676-56684695 | None:intergenic | 45.0% | |
| CGATGTGTTTCGACCTTGAA+TGG | + | chr4.1:56686406-56686425 | None:intergenic | 45.0% | |
| CGCAATCACTGAAGGTTGTA+AGG | - | chr4.1:56686271-56686290 | MS.gene71138:intron | 45.0% | |
| CTACCCACTGCTGAAGAATA+GGG | + | chr4.1:56685927-56685946 | None:intergenic | 45.0% | |
| CTAGTTTAGCAGCTAGACCA+AGG | + | chr4.1:56685320-56685339 | None:intergenic | 45.0% | |
| GACTCTCAAATGACCATAGG+AGG | + | chr4.1:56684533-56684552 | None:intergenic | 45.0% | |
| GAGTACATCGCAATCACTGA+AGG | - | chr4.1:56686263-56686282 | MS.gene71138:intron | 45.0% | |
| GCAGCCTATTGTAGATCTCA+TGG | - | chr4.1:56684283-56684302 | MS.gene71138:intron | 45.0% | |
| GGATCCTGCTACTAAGAAGA+TGG | - | chr4.1:56684669-56684688 | MS.gene71138:intron | 45.0% | |
| GGCTCTCTGTATGTTATGCA+GGG | - | chr4.1:56683803-56683822 | MS.gene71138:CDS | 45.0% | |
| GGTATGTCGAATTCTTGCTG+AGG | + | chr4.1:56686385-56686404 | None:intergenic | 45.0% | |
| GGTGCAGTGAAGAAGATTCT+TGG | - | chr4.1:56685711-56685730 | MS.gene71138:intron | 45.0% | |
| GTGCTGTGAAATGGATACTG+AGG | - | chr4.1:56686042-56686061 | MS.gene71138:intron | 45.0% | |
| TAAAGCAGGCTCCAAGACAA+TGG | - | chr4.1:56685484-56685503 | MS.gene71138:CDS | 45.0% | |
| TCAGGCTCCTCCATTTGATT+GGG | + | chr4.1:56684832-56684851 | None:intergenic | 45.0% | |
| TCCATTCATCTGAGGAGTCT+TGG | + | chr4.1:56684332-56684351 | None:intergenic | 45.0% | |
| TCCTGTGAAGATTGTCTAGC+AGG | - | chr4.1:56683968-56683987 | MS.gene71138:intron | 45.0% | |
| TCTACATCTGAAAGGTCCCT+TGG | - | chr4.1:56684076-56684095 | MS.gene71138:intron | 45.0% | |
| TGCTGAGGTGAATTGCACTT+TGG | + | chr4.1:56686370-56686389 | None:intergenic | 45.0% | |
| TTCAATGCCCTCTTTCCATC+TGG | + | chr4.1:56685144-56685163 | None:intergenic | 45.0% | |
| TTGTAAAGAAGCTGCAGGCT+TGG | - | chr4.1:56686550-56686569 | MS.gene71138:CDS | 45.0% | |
| ! | CACACAAAGTGTTCTTTGCC+TGG | + | chr4.1:56685438-56685457 | None:intergenic | 45.0% |
| ! | CACTCCAGTGTTCTTTTCCT+GGG | + | chr4.1:56686025-56686044 | None:intergenic | 45.0% |
| ! | CCAAACTTTTCTCGCTCATG+TGG | + | chr4.1:56683898-56683917 | None:intergenic | 45.0% |
| ! | GTGCTTTGTATCTGGGGTTT+GGG | + | chr4.1:56685206-56685225 | None:intergenic | 45.0% |
| !! | AACACTGGAGTGCTGTGAAA+TGG | - | chr4.1:56686033-56686052 | MS.gene71138:intron | 45.0% |
| !! | AAGGGGTGCCATCAAAAGAA+AGG | - | chr4.1:56685237-56685256 | MS.gene71138:intron | 45.0% |
| !!! | GCAGGAACTTTTTCATCCAC+AGG | + | chr4.1:56686301-56686320 | None:intergenic | 45.0% |
| ACATCTGAAAGGTCCCTTGG+TGG | - | chr4.1:56684079-56684098 | MS.gene71138:intron | 50.0% | |
| CCCAAGACTCCTCAGATGAA+TGG | - | chr4.1:56684328-56684347 | MS.gene71138:CDS | 50.0% | |
| CCTACAGCATAACCGATGTC+TGG | + | chr4.1:56685978-56685997 | None:intergenic | 50.0% | |
| CCTGAAGGTTTCGTTGAACC+AGG | - | chr4.1:56685417-56685436 | MS.gene71138:CDS | 50.0% | |
| CCTGGTTCAACGAAACCTTC+AGG | + | chr4.1:56685420-56685439 | None:intergenic | 50.0% | |
| GAACTGTGGCACAAACGACT+TGG | - | chr4.1:56683872-56683891 | MS.gene71138:CDS | 50.0% | |
| GATTCTGGCCTAACTCTTGC+AGG | + | chr4.1:56686319-56686338 | None:intergenic | 50.0% | |
| GCCTGCTAGACAATCTTCAC+AGG | + | chr4.1:56683972-56683991 | None:intergenic | 50.0% | |
| GCTACCCACTGCTGAAGAAT+AGG | + | chr4.1:56685928-56685947 | None:intergenic | 50.0% | |
| GGAAAAATGGTTGCGGTCCA+TGG | - | chr4.1:56685065-56685084 | MS.gene71138:intron | 50.0% | |
| GGAGAATGAGACGTATGACC+TGG | - | chr4.1:56685110-56685129 | MS.gene71138:intron | 50.0% | |
| GGTCGAAACACATCGATGTG+AGG | - | chr4.1:56686411-56686430 | MS.gene71138:intron | 50.0% | |
| GTGCCCTATTCTTCAGCAGT+GGG | - | chr4.1:56685921-56685940 | MS.gene71138:intron | 50.0% | |
| TCCAGTTGCTCGTTCTACAG+AGG | + | chr4.1:56684209-56684228 | None:intergenic | 50.0% | |
| TCGGCTACTCCATTCATCTG+AGG | + | chr4.1:56684340-56684359 | None:intergenic | 50.0% | |
| TGCAGACCATGGCGTACATA+AGG | + | chr4.1:56685950-56685969 | None:intergenic | 50.0% | |
| TGCGATGTACTCTGCTTCTG+TGG | + | chr4.1:56686255-56686274 | None:intergenic | 50.0% | |
| TTCATCTGAGGAGTCTTGGG+AGG | + | chr4.1:56684328-56684347 | None:intergenic | 50.0% | |
| ! | CCAGACATCGGTTATGCTGT+AGG | - | chr4.1:56685975-56685994 | MS.gene71138:intron | 50.0% |
| ! | CGTGCTTTGTATCTGGGGTT+TGG | + | chr4.1:56685207-56685226 | None:intergenic | 50.0% |
| ! | GAGCAGGTCCTTTGCTATGA+AGG | - | chr4.1:56685683-56685702 | MS.gene71138:intron | 50.0% |
| ! | GCACTCCAGTGTTCTTTTCC+TGG | + | chr4.1:56686026-56686045 | None:intergenic | 50.0% |
| GATGGTTCGAAGCAGAGACG+TGG | - | chr4.1:56684687-56684706 | MS.gene71138:intron | 55.0% | |
| GCCTCTGTAGAACGAGCAAC+TGG | - | chr4.1:56684205-56684224 | MS.gene71138:intron | 55.0% | |
| GGTGCCCTATTCTTCAGCAG+TGG | - | chr4.1:56685920-56685939 | MS.gene71138:intron | 55.0% | |
| !! | GGGTAGCCTTATGTACGCCA+TGG | - | chr4.1:56685941-56685960 | MS.gene71138:intron | 55.0% |
| CCTGTGCATGTTCCGCTACC+TGG | - | chr4.1:56685834-56685853 | MS.gene71138:intron | 60.0% | |
| GTCTGCACGAGGCCAGACAT+CGG | - | chr4.1:56685963-56685982 | MS.gene71138:intron | 60.0% | |
| TGTACGCCATGGTCTGCACG+AGG | - | chr4.1:56685952-56685971 | MS.gene71138:intron | 60.0% | |
| TTGCAGGGGGAGCTGTCTCA+TGG | - | chr4.1:56686195-56686214 | MS.gene71138:intron | 60.0% | |
| !! | CCAGGTAGCGGAACATGCAC+AGG | + | chr4.1:56685837-56685856 | None:intergenic | 60.0% |
| GTCTGGCCTCGTGCAGACCA+TGG | + | chr4.1:56685961-56685980 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 56683776 | 56686589 | 56683776 | ID=MS.gene71138 |
| chr4.1 | mRNA | 56683776 | 56686589 | 56683776 | ID=MS.gene71138.t1;Parent=MS.gene71138 |
| chr4.1 | exon | 56686412 | 56686589 | 56686412 | ID=MS.gene71138.t1.exon1;Parent=MS.gene71138.t1 |
| chr4.1 | CDS | 56686412 | 56686589 | 56686412 | ID=cds.MS.gene71138.t1;Parent=MS.gene71138.t1 |
| chr4.1 | exon | 56685371 | 56685583 | 56685371 | ID=MS.gene71138.t1.exon2;Parent=MS.gene71138.t1 |
| chr4.1 | CDS | 56685371 | 56685583 | 56685371 | ID=cds.MS.gene71138.t1;Parent=MS.gene71138.t1 |
| chr4.1 | exon | 56684302 | 56684581 | 56684302 | ID=MS.gene71138.t1.exon3;Parent=MS.gene71138.t1 |
| chr4.1 | CDS | 56684302 | 56684581 | 56684302 | ID=cds.MS.gene71138.t1;Parent=MS.gene71138.t1 |
| chr4.1 | exon | 56683776 | 56683932 | 56683776 | ID=MS.gene71138.t1.exon4;Parent=MS.gene71138.t1 |
| chr4.1 | CDS | 56683776 | 56683932 | 56683776 | ID=cds.MS.gene71138.t1;Parent=MS.gene71138.t1 |
| Gene Sequence |
| Protein sequence |
