Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71720.t1 | AES60682.1 | 86.4 | 419 | 21 | 3 | 1 | 418 | 1 | 384 | 4.10E-201 | 710.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71720.t1 | Q9FKK6 | 44.8 | 393 | 173 | 8 | 7 | 397 | 41 | 391 | 5.5e-82 | 306.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71720.t1 | G7IA65 | 86.4 | 419 | 21 | 3 | 1 | 418 | 1 | 384 | 2.9e-201 | 710.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052611 | MS.gene71720 | 0.804356 | 2.25E-49 | -1.69E-46 |
MS.gene060962 | MS.gene71720 | 0.800689 | 1.28E-48 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71720.t1 | MTR_1g062090 | 86.396 | 419 | 21 | 3 | 1 | 418 | 1 | 384 | 0.0 | 706 |
MS.gene71720.t1 | MTR_4g060790 | 53.771 | 411 | 155 | 8 | 1 | 399 | 1 | 388 | 8.79e-139 | 403 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene71720.t1 | AT5G60370 | 44.670 | 394 | 174 | 8 | 7 | 398 | 41 | 392 | 1.34e-98 | 300 |
MS.gene71720.t1 | AT5G60370 | 44.479 | 317 | 127 | 9 | 7 | 316 | 41 | 315 | 4.66e-65 | 211 |
Find 86 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCGGATTTGGCCTTTGTTTA+TGG | 0.074187 | 1.1:+77514394 | MS.gene71720:CDS |
TATGATCTCAACTGGAATTT+TGG | 0.122009 | 1.1:-77513999 | None:intergenic |
GCAGCATCTTACACATATTT+TGG | 0.169674 | 1.1:-77514942 | None:intergenic |
CCAAATCCGGTTTGGCTTCA+TGG | 0.229050 | 1.1:-77514381 | None:intergenic |
GCAAAATCAAAGCTTATTAT+AGG | 0.231984 | 1.1:-77514601 | None:intergenic |
TTAGGAATTGTCTTGAGTTT+TGG | 0.264173 | 1.1:+77515070 | MS.gene71720:CDS |
CGAACAGCGTGTGTTGATTC+TGG | 0.273513 | 1.1:+77514880 | MS.gene71720:CDS |
ACACGTTACTGCACCGGTTT+AGG | 0.316965 | 1.1:+77514266 | MS.gene71720:CDS |
CCATGAAGCCAAACCGGATT+TGG | 0.319682 | 1.1:+77514381 | MS.gene71720:CDS |
CGACTCCAAGAGGCTGATAT+TGG | 0.326348 | 1.1:-77514115 | None:intergenic |
CTTGTCACACCACTCTGTTT+TGG | 0.327688 | 1.1:-77514320 | None:intergenic |
ATCTTCCTCATCAACATAAC+TGG | 0.331924 | 1.1:-77515109 | None:intergenic |
GGTGGATAAAGAATGAAATT+AGG | 0.335421 | 1.1:+77515052 | MS.gene71720:CDS |
TCAGCTTGAACAAGAGGTTC+TGG | 0.351425 | 1.1:+77514468 | MS.gene71720:CDS |
GCCTCTTGGAGTCGCAAAAT+CGG | 0.385198 | 1.1:+77514124 | MS.gene71720:CDS |
AAACTTGTTAATTTCATCAA+TGG | 0.388045 | 1.1:+77514538 | MS.gene71720:CDS |
GAAGTCATCTGAAGACTATA+TGG | 0.392038 | 1.1:+77514510 | MS.gene71720:CDS |
AGCAGGAGTGACAGGAGAAC+GGG | 0.398242 | 1.1:-77514068 | None:intergenic |
CAGTAACGTGTTATCTGCTC+TGG | 0.432179 | 1.1:-77514254 | None:intergenic |
AACAAAGGCCAAATCCGGTT+TGG | 0.439873 | 1.1:-77514389 | None:intergenic |
ACAGCAGCAGCAGGAGTGAC+AGG | 0.439951 | 1.1:-77514076 | None:intergenic |
TCATCACTTATGATCTCAAC+TGG | 0.447136 | 1.1:-77514007 | None:intergenic |
GACTTCACATTCACTTCCAC+TGG | 0.448189 | 1.1:-77514493 | None:intergenic |
TGGGGAAAATTGATGAAATT+CGG | 0.453588 | 1.1:+77514641 | MS.gene71720:CDS |
CACCAATGTAAGCAGGGCAC+TGG | 0.454243 | 1.1:-77515164 | None:intergenic |
AGCCCCTCTTGCTCCTAAAC+CGG | 0.455720 | 1.1:-77514279 | None:intergenic |
CTGCCAATGTCTTCTATGTC+GGG | 0.463405 | 1.1:-77514205 | None:intergenic |
AATGTCTTCTATGTCGGGTT+CGG | 0.464287 | 1.1:-77514200 | None:intergenic |
AACCTTCTCTTGGCTCGCAC+TGG | 0.468505 | 1.1:-77514166 | None:intergenic |
TAATGTGTTACAAGTATTTG+TGG | 0.476002 | 1.1:+77514770 | MS.gene71720:CDS |
GAAGAACCATGAAGCCAAAC+CGG | 0.486945 | 1.1:+77514375 | MS.gene71720:CDS |
CCATAAACAAAGGCCAAATC+CGG | 0.487026 | 1.1:-77514394 | None:intergenic |
TTGGCCTTTGTTTATGGAGG+AGG | 0.497379 | 1.1:+77514400 | MS.gene71720:CDS |
AGAGTGGTGTGACAAGCAAA+TGG | 0.498102 | 1.1:+77514327 | MS.gene71720:CDS |
AGCATTGACACTTGCTGATG+TGG | 0.498297 | 1.1:+77514909 | MS.gene71720:CDS |
GATATTGGTGAATGTATAGC+AGG | 0.501808 | 1.1:-77514100 | None:intergenic |
CACAAGGTATTTGGATGGTG+GGG | 0.503716 | 1.1:+77514623 | MS.gene71720:CDS |
GCACAAGGTATTTGGATGGT+GGG | 0.504127 | 1.1:+77514622 | MS.gene71720:CDS |
TCAGAATCACCAATGTAAGC+AGG | 0.505369 | 1.1:-77515171 | None:intergenic |
TCCCAGTGCCCTGCTTACAT+TGG | 0.505487 | 1.1:+77515162 | MS.gene71720:CDS |
ATTCACCAATATCAGCCTCT+TGG | 0.505967 | 1.1:+77514110 | MS.gene71720:CDS |
TGAGTCATCATACTCTGAAA+GGG | 0.510429 | 1.1:-77515205 | None:intergenic |
CACTAGCTTATCATTAGCAC+GGG | 0.510557 | 1.1:-77514965 | None:intergenic |
ACTGCCAATGTCTTCTATGT+CGG | 0.516993 | 1.1:-77514206 | None:intergenic |
TTGAGTCATCATACTCTGAA+AGG | 0.523686 | 1.1:-77515206 | None:intergenic |
AGAAGCTAAAGCAGCATCAA+TGG | 0.525186 | 1.1:-77514041 | None:intergenic |
TATTCAAACAATCTTTCAGA+AGG | 0.525726 | 1.1:-77514817 | None:intergenic |
AATGTGTTACAAGTATTTGT+GGG | 0.525943 | 1.1:+77514771 | MS.gene71720:CDS |
TTGTTTATGGAGGAGGAAGT+TGG | 0.529333 | 1.1:+77514407 | MS.gene71720:CDS |
GGATCAGCTACCAGAATGGC+AGG | 0.530509 | 1.1:+77513968 | None:intergenic |
GTCTTAGTTTCAACTAGCAT+CGG | 0.533684 | 1.1:-77514691 | None:intergenic |
CAGCAGGAGTGACAGGAGAA+CGG | 0.534522 | 1.1:-77514069 | None:intergenic |
AAGAGTAAAGCGATGAAAGC+TGG | 0.536293 | 1.1:+77514430 | MS.gene71720:CDS |
ACACGAGAATAACCTTCTCT+TGG | 0.536798 | 1.1:-77514176 | None:intergenic |
GTGAATCAACTGTTGTTTGA+AGG | 0.539135 | 1.1:+77514562 | MS.gene71720:CDS |
TGCACAAGGTATTTGGATGG+TGG | 0.540504 | 1.1:+77514621 | MS.gene71720:CDS |
AGAAGCCAGTTATGTTGATG+AGG | 0.540672 | 1.1:+77515104 | MS.gene71720:CDS |
CAGATAACACGTTACTGCAC+CGG | 0.541368 | 1.1:+77514260 | MS.gene71720:CDS |
ATAGCAGGAACAGCAGCAGC+AGG | 0.544511 | 1.1:-77514085 | None:intergenic |
TGATGAAATTCGGATGCCTA+AGG | 0.544579 | 1.1:+77514651 | MS.gene71720:CDS |
TCAGAGGGATCACTCACTGT+TGG | 0.546666 | 1.1:+77515002 | MS.gene71720:CDS |
CGATGAAAGCTGGTATAGAT+CGG | 0.566862 | 1.1:+77514440 | MS.gene71720:CDS |
ACCAATGTAAGCAGGGCACT+GGG | 0.567241 | 1.1:-77515163 | None:intergenic |
TTCCAGTGCGAGCCAAGAGA+AGG | 0.567406 | 1.1:+77514164 | MS.gene71720:CDS |
ATTCTGCAGGAACTGTATCT+CGG | 0.580937 | 1.1:-77514720 | None:intergenic |
GAGGAAGATCAATGGAAATG+TGG | 0.585803 | 1.1:+77515123 | MS.gene71720:CDS |
ATTCAAACAATCTTTCAGAA+GGG | 0.587293 | 1.1:-77514816 | None:intergenic |
ATTGACACTTGCTGATGTGG+TGG | 0.594742 | 1.1:+77514912 | MS.gene71720:CDS |
ATGTTGATGAGGAAGATCAA+TGG | 0.596284 | 1.1:+77515115 | MS.gene71720:CDS |
ACACTAGCTTATCATTAGCA+CGG | 0.607468 | 1.1:-77514966 | None:intergenic |
CACCGGTTTAGGAGCAAGAG+GGG | 0.610660 | 1.1:+77514277 | MS.gene71720:CDS |
CAGAATCACCAATGTAAGCA+GGG | 0.612970 | 1.1:-77515170 | None:intergenic |
GATTTGGCCTTTGTTTATGG+AGG | 0.613744 | 1.1:+77514397 | MS.gene71720:CDS |
TGCACCGGTTTAGGAGCAAG+AGG | 0.615572 | 1.1:+77514275 | MS.gene71720:CDS |
GATCATAAGTGATGATGAGA+TGG | 0.617193 | 1.1:+77514015 | MS.gene71720:CDS |
GTTGAGATACGAATCTCAGA+GGG | 0.624591 | 1.1:+77514987 | MS.gene71720:CDS |
TCGCACTGGAACTGACTGAA+AGG | 0.627807 | 1.1:-77514152 | None:intergenic |
GCACCGGTTTAGGAGCAAGA+GGG | 0.640558 | 1.1:+77514276 | MS.gene71720:CDS |
ACTTCCTCCTCCATAAACAA+AGG | 0.641083 | 1.1:-77514404 | None:intergenic |
ACAAGAGGTTCTGGAACCAG+TGG | 0.648454 | 1.1:+77514477 | MS.gene71720:CDS |
AATTTGTGTATGATGGTAGG+TGG | 0.653126 | 1.1:+77515034 | MS.gene71720:CDS |
TCTTTACATAAATTACGTCG+AGG | 0.667263 | 1.1:-77514853 | None:intergenic |
GAACCCGACATAGAAGACAT+TGG | 0.671635 | 1.1:+77514202 | MS.gene71720:CDS |
TGTTGAGATACGAATCTCAG+AGG | 0.675787 | 1.1:+77514986 | MS.gene71720:CDS |
CCGATATCACCAAAACAGAG+TGG | 0.741120 | 1.1:+77514311 | MS.gene71720:CDS |
ACTAGCTTATCATTAGCACG+GGG | 0.797096 | 1.1:-77514964 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAACTTGTTAATTTCATCAA+TGG | + | chr1.1:77514538-77514557 | MS.gene71720:CDS | 20.0% |
! | AAAAATTTGTGTATGATGGT+AGG | + | chr1.1:77515031-77515050 | MS.gene71720:CDS | 25.0% |
! | AATGTGTTACAAGTATTTGT+GGG | + | chr1.1:77514771-77514790 | MS.gene71720:CDS | 25.0% |
! | ATTCAAACAATCTTTCAGAA+GGG | - | chr1.1:77514819-77514838 | None:intergenic | 25.0% |
! | GAAGAAAAATTTGTGTATGA+TGG | + | chr1.1:77515027-77515046 | MS.gene71720:CDS | 25.0% |
! | GCAAAATCAAAGCTTATTAT+AGG | - | chr1.1:77514604-77514623 | None:intergenic | 25.0% |
! | TAATGTGTTACAAGTATTTG+TGG | + | chr1.1:77514770-77514789 | MS.gene71720:CDS | 25.0% |
! | TATTCAAACAATCTTTCAGA+AGG | - | chr1.1:77514820-77514839 | None:intergenic | 25.0% |
!!! | TTATGATCTTTTTTTGCCTT+AGG | - | chr1.1:77514670-77514689 | None:intergenic | 25.0% |
CAGAATCACAAAAAAGAAAC+GGG | + | chr1.1:77514737-77514756 | MS.gene71720:CDS | 30.0% | |
GCAGAATCACAAAAAAGAAA+CGG | + | chr1.1:77514736-77514755 | MS.gene71720:CDS | 30.0% | |
GGTGGATAAAGAATGAAATT+AGG | + | chr1.1:77515052-77515071 | MS.gene71720:CDS | 30.0% | |
TCTTTACATAAATTACGTCG+AGG | - | chr1.1:77514856-77514875 | None:intergenic | 30.0% | |
TGGGGAAAATTGATGAAATT+CGG | + | chr1.1:77514641-77514660 | MS.gene71720:CDS | 30.0% | |
! | TATGATCTCAACTGGAATTT+TGG | - | chr1.1:77514002-77514021 | None:intergenic | 30.0% |
! | TTAGGAATTGTCTTGAGTTT+TGG | + | chr1.1:77515070-77515089 | MS.gene71720:CDS | 30.0% |
!! | ATAAGCTTTGATTTTGCACA+AGG | + | chr1.1:77514607-77514626 | MS.gene71720:CDS | 30.0% |
!! | TTGATTTTGCACAAGGTATT+TGG | + | chr1.1:77514614-77514633 | MS.gene71720:CDS | 30.0% |
!!! | TTTCGCTCTTTTTTGAAGAA+TGG | + | chr1.1:77514353-77514372 | MS.gene71720:CDS | 30.0% |
!!! | TTTCTTTTTTGTGATTCTGC+AGG | - | chr1.1:77514736-77514755 | None:intergenic | 30.0% |
AATCACAAAAAAGAAACGGG+AGG | + | chr1.1:77514740-77514759 | MS.gene71720:CDS | 35.0% | |
AATTTGTGTATGATGGTAGG+TGG | + | chr1.1:77515034-77515053 | MS.gene71720:CDS | 35.0% | |
ATCTTCCTCATCAACATAAC+TGG | - | chr1.1:77515112-77515131 | None:intergenic | 35.0% | |
GAAGTCATCTGAAGACTATA+TGG | + | chr1.1:77514510-77514529 | MS.gene71720:CDS | 35.0% | |
GATATTGGTGAATGTATAGC+AGG | - | chr1.1:77514103-77514122 | None:intergenic | 35.0% | |
GTCTTAGTTTCAACTAGCAT+CGG | - | chr1.1:77514694-77514713 | None:intergenic | 35.0% | |
TCATCACTTATGATCTCAAC+TGG | - | chr1.1:77514010-77514029 | None:intergenic | 35.0% | |
TTGAGTCATCATACTCTGAA+AGG | - | chr1.1:77515209-77515228 | None:intergenic | 35.0% | |
! | ACACTAGCTTATCATTAGCA+CGG | - | chr1.1:77514969-77514988 | None:intergenic | 35.0% |
! | ATGTTGATGAGGAAGATCAA+TGG | + | chr1.1:77515115-77515134 | MS.gene71720:CDS | 35.0% |
! | GATCATAAGTGATGATGAGA+TGG | + | chr1.1:77514015-77514034 | MS.gene71720:CDS | 35.0% |
! | GCAGCATCTTACACATATTT+TGG | - | chr1.1:77514945-77514964 | None:intergenic | 35.0% |
! | GTGAATCAACTGTTGTTTGA+AGG | + | chr1.1:77514562-77514581 | MS.gene71720:CDS | 35.0% |
! | TGAGTCATCATACTCTGAAA+GGG | - | chr1.1:77515208-77515227 | None:intergenic | 35.0% |
!! | TTTTGCACAAGGTATTTGGA+TGG | + | chr1.1:77514618-77514637 | MS.gene71720:CDS | 35.0% |
!!! | AATTGTCTTGAGTTTTGGCT+TGG | + | chr1.1:77515075-77515094 | MS.gene71720:CDS | 35.0% |
AAGAGTAAAGCGATGAAAGC+TGG | + | chr1.1:77514430-77514449 | MS.gene71720:CDS | 40.0% | |
AATGTCTTCTATGTCGGGTT+CGG | - | chr1.1:77514203-77514222 | None:intergenic | 40.0% | |
ACACGAGAATAACCTTCTCT+TGG | - | chr1.1:77514179-77514198 | None:intergenic | 40.0% | |
ACTGCCAATGTCTTCTATGT+CGG | - | chr1.1:77514209-77514228 | None:intergenic | 40.0% | |
ACTTCCTCCTCCATAAACAA+AGG | - | chr1.1:77514407-77514426 | None:intergenic | 40.0% | |
AGAAGCCAGTTATGTTGATG+AGG | + | chr1.1:77515104-77515123 | MS.gene71720:CDS | 40.0% | |
AGAAGCTAAAGCAGCATCAA+TGG | - | chr1.1:77514044-77514063 | None:intergenic | 40.0% | |
ATTCACCAATATCAGCCTCT+TGG | + | chr1.1:77514110-77514129 | MS.gene71720:CDS | 40.0% | |
ATTCTGCAGGAACTGTATCT+CGG | - | chr1.1:77514723-77514742 | None:intergenic | 40.0% | |
CAGAATCACCAATGTAAGCA+GGG | - | chr1.1:77515173-77515192 | None:intergenic | 40.0% | |
CCATAAACAAAGGCCAAATC+CGG | - | chr1.1:77514397-77514416 | None:intergenic | 40.0% | |
CGATGAAAGCTGGTATAGAT+CGG | + | chr1.1:77514440-77514459 | MS.gene71720:CDS | 40.0% | |
GAGGAAGATCAATGGAAATG+TGG | + | chr1.1:77515123-77515142 | MS.gene71720:CDS | 40.0% | |
GTTGAGATACGAATCTCAGA+GGG | + | chr1.1:77514987-77515006 | MS.gene71720:CDS | 40.0% | |
TCAGAATCACCAATGTAAGC+AGG | - | chr1.1:77515174-77515193 | None:intergenic | 40.0% | |
TGATGAAATTCGGATGCCTA+AGG | + | chr1.1:77514651-77514670 | MS.gene71720:CDS | 40.0% | |
TGTTGAGATACGAATCTCAG+AGG | + | chr1.1:77514986-77515005 | MS.gene71720:CDS | 40.0% | |
TTGTTTATGGAGGAGGAAGT+TGG | + | chr1.1:77514407-77514426 | MS.gene71720:CDS | 40.0% | |
! | ACTAGCTTATCATTAGCACG+GGG | - | chr1.1:77514967-77514986 | None:intergenic | 40.0% |
! | CACTAGCTTATCATTAGCAC+GGG | - | chr1.1:77514968-77514987 | None:intergenic | 40.0% |
! | GATCTCAACTGGAATTTTGG+AGG | - | chr1.1:77513999-77514018 | None:intergenic | 40.0% |
! | GATTTGGCCTTTGTTTATGG+AGG | + | chr1.1:77514397-77514416 | MS.gene71720:CDS | 40.0% |
! | GCATTTTCAGCTTGAACAAG+AGG | + | chr1.1:77514462-77514481 | MS.gene71720:CDS | 40.0% |
!!! | CCACTCTGTTTTGGTGATAT+CGG | - | chr1.1:77514314-77514333 | None:intergenic | 40.0% |
AACAAAGGCCAAATCCGGTT+TGG | - | chr1.1:77514392-77514411 | None:intergenic | 45.0% | |
AGAGTGGTGTGACAAGCAAA+TGG | + | chr1.1:77514327-77514346 | MS.gene71720:CDS | 45.0% | |
CAGATAACACGTTACTGCAC+CGG | + | chr1.1:77514260-77514279 | MS.gene71720:CDS | 45.0% | |
CAGTAACGTGTTATCTGCTC+TGG | - | chr1.1:77514257-77514276 | None:intergenic | 45.0% | |
CCGATATCACCAAAACAGAG+TGG | + | chr1.1:77514311-77514330 | MS.gene71720:CDS | 45.0% | |
CTGCCAATGTCTTCTATGTC+GGG | - | chr1.1:77514208-77514227 | None:intergenic | 45.0% | |
GAACCCGACATAGAAGACAT+TGG | + | chr1.1:77514202-77514221 | MS.gene71720:CDS | 45.0% | |
GAAGAACCATGAAGCCAAAC+CGG | + | chr1.1:77514375-77514394 | MS.gene71720:CDS | 45.0% | |
GACTTCACATTCACTTCCAC+TGG | - | chr1.1:77514496-77514515 | None:intergenic | 45.0% | |
TCAGCTTGAACAAGAGGTTC+TGG | + | chr1.1:77514468-77514487 | MS.gene71720:CDS | 45.0% | |
! | ATTGACACTTGCTGATGTGG+TGG | + | chr1.1:77514912-77514931 | MS.gene71720:CDS | 45.0% |
! | CACAAGGTATTTGGATGGTG+GGG | + | chr1.1:77514623-77514642 | MS.gene71720:CDS | 45.0% |
! | CCGGATTTGGCCTTTGTTTA+TGG | + | chr1.1:77514394-77514413 | MS.gene71720:CDS | 45.0% |
! | CTTGTCACACCACTCTGTTT+TGG | - | chr1.1:77514323-77514342 | None:intergenic | 45.0% |
! | GCACAAGGTATTTGGATGGT+GGG | + | chr1.1:77514622-77514641 | MS.gene71720:CDS | 45.0% |
! | TGCACAAGGTATTTGGATGG+TGG | + | chr1.1:77514621-77514640 | MS.gene71720:CDS | 45.0% |
! | TTGGCCTTTGTTTATGGAGG+AGG | + | chr1.1:77514400-77514419 | MS.gene71720:CDS | 45.0% |
!! | AGCATTGACACTTGCTGATG+TGG | + | chr1.1:77514909-77514928 | MS.gene71720:CDS | 45.0% |
CCATGAAGCCAAACCGGATT+TGG | + | chr1.1:77514381-77514400 | MS.gene71720:CDS | 50.0% | |
CGACTCCAAGAGGCTGATAT+TGG | - | chr1.1:77514118-77514137 | None:intergenic | 50.0% | |
GCCTCTTGGAGTCGCAAAAT+CGG | + | chr1.1:77514124-77514143 | MS.gene71720:CDS | 50.0% | |
TCAGAGGGATCACTCACTGT+TGG | + | chr1.1:77515002-77515021 | MS.gene71720:CDS | 50.0% | |
TCGCACTGGAACTGACTGAA+AGG | - | chr1.1:77514155-77514174 | None:intergenic | 50.0% | |
! | ACCAATGTAAGCAGGGCACT+GGG | - | chr1.1:77515166-77515185 | None:intergenic | 50.0% |
!! | ACAAGAGGTTCTGGAACCAG+TGG | + | chr1.1:77514477-77514496 | MS.gene71720:CDS | 50.0% |
!! | ACACGTTACTGCACCGGTTT+AGG | + | chr1.1:77514266-77514285 | MS.gene71720:CDS | 50.0% |
!! | CCAAATCCGGTTTGGCTTCA+TGG | - | chr1.1:77514384-77514403 | None:intergenic | 50.0% |
!! | CGAACAGCGTGTGTTGATTC+TGG | + | chr1.1:77514880-77514899 | MS.gene71720:CDS | 50.0% |
AGCAGGAGTGACAGGAGAAC+GGG | - | chr1.1:77514071-77514090 | None:intergenic | 55.0% | |
AGCCCCTCTTGCTCCTAAAC+CGG | - | chr1.1:77514282-77514301 | None:intergenic | 55.0% | |
ATAGCAGGAACAGCAGCAGC+AGG | - | chr1.1:77514088-77514107 | None:intergenic | 55.0% | |
CACCAATGTAAGCAGGGCAC+TGG | - | chr1.1:77515167-77515186 | None:intergenic | 55.0% | |
CAGCAGGAGTGACAGGAGAA+CGG | - | chr1.1:77514072-77514091 | None:intergenic | 55.0% | |
TCCCAGTGCCCTGCTTACAT+TGG | + | chr1.1:77515162-77515181 | MS.gene71720:CDS | 55.0% | |
TTCCAGTGCGAGCCAAGAGA+AGG | + | chr1.1:77514164-77514183 | MS.gene71720:CDS | 55.0% | |
! | AACCTTCTCTTGGCTCGCAC+TGG | - | chr1.1:77514169-77514188 | None:intergenic | 55.0% |
!! | CACCGGTTTAGGAGCAAGAG+GGG | + | chr1.1:77514277-77514296 | MS.gene71720:CDS | 55.0% |
!! | GCACCGGTTTAGGAGCAAGA+GGG | + | chr1.1:77514276-77514295 | MS.gene71720:CDS | 55.0% |
!! | GCCGATTTTGCGACTCCAAG+AGG | - | chr1.1:77514128-77514147 | None:intergenic | 55.0% |
!! | TGCACCGGTTTAGGAGCAAG+AGG | + | chr1.1:77514275-77514294 | MS.gene71720:CDS | 55.0% |
ACAGCAGCAGCAGGAGTGAC+AGG | - | chr1.1:77514079-77514098 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 77513983 | 77515239 | 77513983 | ID=MS.gene71720 |
chr1.1 | mRNA | 77513983 | 77515239 | 77513983 | ID=MS.gene71720.t1;Parent=MS.gene71720 |
chr1.1 | exon | 77513983 | 77515239 | 77513983 | ID=MS.gene71720.t1.exon1;Parent=MS.gene71720.t1 |
chr1.1 | CDS | 77513983 | 77515239 | 77513983 | ID=cds.MS.gene71720.t1;Parent=MS.gene71720.t1 |
Gene Sequence |
Protein sequence |