AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene71770

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71770.t1 MTR_1g109470 96.946 753 15 3 1 747 1 751 0.0 1449
MS.gene71770.t1 MTR_6g082400 37.194 777 304 33 14 747 4 639 1.05e-99 321
MS.gene71770.t1 MTR_8g106245 38.307 449 167 22 26 466 18 364 2.36e-54 197
MS.gene71770.t1 MTR_4g091530 47.959 196 89 6 24 216 6 191 3.37e-46 171
MS.gene71770.t1 MTR_2g010160 46.099 141 65 3 27 159 8 145 4.24e-32 130
MS.gene71770.t1 MTR_4g092850 47.143 140 61 5 27 159 9 142 1.39e-29 123
MS.gene71770.t1 MTR_2g461180 40.719 167 82 5 54 211 214 372 1.46e-26 117
MS.gene71770.t1 MTR_2g005700 35.669 157 74 4 53 194 11 155 6.58e-25 106
MS.gene71770.t1 MTR_4g116520 38.235 170 91 6 54 214 151 315 1.01e-24 111
MS.gene71770.t1 MTR_5g067120 47.826 115 52 4 51 162 23 132 6.55e-24 105
MS.gene71770.t1 MTR_6g033130 50.000 108 47 3 54 160 190 291 1.16e-22 104
MS.gene71770.t1 MTR_6g033130 50.000 108 47 3 54 160 190 291 1.17e-22 104
MS.gene71770.t1 MTR_5g067160 34.286 210 115 7 28 218 9 214 2.25e-21 97.8
MS.gene71770.t1 MTR_3g077030 40.833 120 65 3 52 171 6 119 3.34e-21 92.8
MS.gene71770.t1 MTR_8g442400 42.857 105 55 2 55 159 179 278 1.79e-20 97.8
MS.gene71770.t1 MTR_5g488180 43.243 111 55 3 54 160 3 109 6.07e-20 89.7
MS.gene71770.t1 MTR_5g088090 43.243 111 55 3 54 160 3 109 6.07e-20 89.7
MS.gene71770.t1 MTR_5g088140 43.243 111 55 3 54 160 3 109 6.07e-20 89.7
MS.gene71770.t1 MTR_5g088120 42.342 111 56 3 54 160 3 109 1.60e-19 87.8
MS.gene71770.t1 MTR_5g488190 42.342 111 56 3 54 160 3 109 1.60e-19 87.8
MS.gene71770.t1 MTR_1g090020 42.857 105 55 2 54 158 193 292 1.63e-19 94.4
MS.gene71770.t1 MTR_5g032960 40.336 119 67 2 53 171 14 128 1.74e-19 88.6
MS.gene71770.t1 MTR_5g088590 42.342 111 56 3 54 160 3 109 1.91e-19 88.6
MS.gene71770.t1 MTR_4g105020 43.590 117 60 3 46 162 2 112 2.15e-19 86.7
MS.gene71770.t1 MTR_5g088040 41.593 113 54 4 54 160 3 109 4.23e-18 84.3
MS.gene71770.t1 MTR_5g088620 40.541 111 58 3 54 160 3 109 4.83e-18 84.3
MS.gene71770.t1 MTR_4g128650 44.340 106 54 3 54 159 27 127 1.31e-15 81.6
MS.gene71770.t1 MTR_5g488200 45.882 85 42 2 76 160 183 263 3.16e-15 78.6
MS.gene71770.t1 MTR_5g067200 44.211 95 49 2 77 171 14 104 1.38e-14 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene71770.t1 AT2G01190 47.416 774 265 29 27 747 36 720 5.21e-155 468
MS.gene71770.t1 AT3G18230 41.535 443 192 13 32 464 38 423 6.49e-69 239
MS.gene71770.t1 AT4G05150 37.847 288 124 11 22 280 36 297 4.23e-39 151
MS.gene71770.t1 AT5G09620 50.676 148 62 4 27 166 8 152 2.62e-35 141
MS.gene71770.t1 AT5G09620 50.676 148 62 4 27 166 8 152 3.82e-35 140
MS.gene71770.t1 AT5G64430 48.993 149 59 4 27 161 8 153 1.89e-32 132
MS.gene71770.t1 AT1G25300 53.913 115 46 1 46 160 2 109 4.17e-32 126
MS.gene71770.t1 AT5G16220 48.462 130 56 3 35 162 19 139 6.73e-26 112
MS.gene71770.t1 AT5G49920 38.356 146 71 4 53 194 8 138 4.07e-25 106
MS.gene71770.t1 AT1G79570 35.882 170 93 5 51 220 173 326 1.61e-23 107
MS.gene71770.t1 AT3G46920 38.732 142 83 3 54 194 8 146 2.36e-23 106
MS.gene71770.t1 AT3G46920 38.732 142 83 3 54 194 74 212 2.52e-23 106
MS.gene71770.t1 AT1G79570 35.882 170 93 5 51 220 173 326 3.26e-23 106
MS.gene71770.t1 AT1G79570 35.882 170 93 5 51 220 173 326 3.26e-23 106
MS.gene71770.t1 AT1G79570 35.882 170 93 5 51 220 173 326 3.35e-23 106
MS.gene71770.t1 AT1G79570 35.882 170 93 5 51 220 173 326 3.35e-23 106
MS.gene71770.t1 AT1G04700 43.448 145 70 6 31 174 100 233 2.20e-22 103
MS.gene71770.t1 AT1G04700 47.934 121 53 5 55 174 122 233 2.88e-22 103
MS.gene71770.t1 AT1G04700 47.934 121 53 5 55 174 122 233 2.88e-22 103
MS.gene71770.t1 AT3G26510 40.769 130 68 3 50 174 5 130 4.84e-22 95.1
MS.gene71770.t1 AT3G26510 40.769 130 68 3 50 174 5 130 4.84e-22 95.1
MS.gene71770.t1 AT3G26510 40.769 130 68 3 50 174 5 130 4.84e-22 95.1
MS.gene71770.t1 AT3G26510 40.769 130 68 3 50 174 5 130 4.84e-22 95.1
MS.gene71770.t1 AT3G26510 40.769 130 68 3 50 174 5 130 4.84e-22 95.1
MS.gene71770.t1 AT3G26510 40.769 130 68 3 50 174 5 130 4.84e-22 95.1
MS.gene71770.t1 AT1G16270 44.444 108 55 2 52 159 162 264 5.73e-22 102
MS.gene71770.t1 AT1G16270 44.444 108 55 2 52 159 162 264 5.73e-22 102
MS.gene71770.t1 AT1G16270 44.444 108 55 2 52 159 162 264 5.73e-22 102
MS.gene71770.t1 AT3G24715 45.000 120 58 4 54 170 175 289 2.61e-21 100
MS.gene71770.t1 AT3G24715 45.000 120 58 4 54 170 175 289 2.61e-21 100
MS.gene71770.t1 AT3G24715 45.000 120 58 4 54 170 175 289 2.61e-21 100
MS.gene71770.t1 AT5G57610 38.849 139 79 4 54 192 23 155 2.97e-21 100
MS.gene71770.t1 AT2G35050 42.500 120 62 4 51 169 173 286 3.22e-21 100
MS.gene71770.t1 AT2G35050 42.500 120 62 4 51 169 173 286 3.22e-21 100
MS.gene71770.t1 AT1G70640 42.982 114 57 4 50 162 3 109 1.95e-19 87.0
MS.gene71770.t1 AT3G48240 43.103 116 57 2 53 168 12 118 6.14e-19 85.5
MS.gene71770.t1 AT5G63130 40.909 110 56 2 53 162 13 113 6.41e-14 71.6
MS.gene71770.t1 AT5G63130 40.909 110 56 2 53 162 13 113 6.41e-14 71.6

Find 223 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGACGAAACGGCACCGTTTA+TGG 0.170692 1.1:-78066038 None:intergenic
GTTTCTCAACCTGGATCTTT+TGG 0.172762 1.1:+78066181 MS.gene71770:CDS
TTCTGTGCAGCAGGCTAATA+TGG 0.185433 1.1:+78067484 MS.gene71770:CDS
CCTTGTTGGGGCTGTCTTGC+AGG 0.210879 1.1:-78067452 None:intergenic
TGGCGAATTTGCCTCCTATT+AGG 0.214995 1.1:+78066302 MS.gene71770:CDS
ATGGTGGTTCTGGTGGTGTT+AGG 0.215415 1.1:+78066338 MS.gene71770:CDS
CTCTCCAAAACCTTGCTTAA+TGG 0.228074 1.1:+78065773 MS.gene71770:CDS
GACTTCTTCGTCTCCGTCTT+TGG 0.229377 1.1:+78066282 MS.gene71770:CDS
AGCAGCCGTCATTTCAGTTT+TGG 0.244960 1.1:-78067615 None:intergenic
GCAGCAGGATCAGAAGGTTT+TGG 0.258724 1.1:+78066396 MS.gene71770:CDS
GGCGAATTTGCCTCCTATTA+GGG 0.266693 1.1:+78066303 MS.gene71770:CDS
CTGGCAGGGGCAGCAGAATT+AGG 0.281688 1.1:-78067752 None:intergenic
AGAAATATTGTAACCTTGTT+GGG 0.287856 1.1:-78067465 None:intergenic
GGAATTGACTGAGCAGATTC+AGG 0.292958 1.1:-78065965 None:intergenic
TCTTCCATTAAGCAAGGTTT+TGG 0.293356 1.1:-78065777 None:intergenic
CTTCTCCTGATTCAGTTTCA+AGG 0.299311 1.1:+78066791 MS.gene71770:CDS
GTATCCACCCTTGTAGTTCC+AGG 0.300999 1.1:-78067110 None:intergenic
GGTTGACGGCGTTGGAGGTT+GGG 0.306728 1.1:-78065492 None:intergenic
CAAATTGTTGTTGCTGCTGC+TGG 0.308116 1.1:-78067223 None:intergenic
TCTTCAACATGCACCCTAAT+AGG 0.318542 1.1:-78066316 None:intergenic
ATGGAGACTTCTTCGTCCTT+TGG 0.332324 1.1:+78066256 MS.gene71770:CDS
AGCATATTCATAAGCATAAC+TGG 0.343168 1.1:-78067771 None:intergenic
GTCTCCATCATAGGCGAATC+AGG 0.346187 1.1:-78066241 None:intergenic
GGTAGGGGAGCACTTCTAAT+GGG 0.347012 1.1:-78067593 None:intergenic
CAAATGGTTGTTGGTGGTAT+TGG 0.347493 1.1:+78066439 MS.gene71770:CDS
GGGGAGGAATCAACGGAATC+GGG 0.352597 1.1:-78065563 None:intergenic
GTCCCATGAGTCGTTGTTGC+GGG 0.355446 1.1:-78065591 None:intergenic
CATGTTGAAGATGGTGGTTC+TGG 0.360128 1.1:+78066328 MS.gene71770:CDS
GGGTAGGGGAGCACTTCTAA+TGG 0.363591 1.1:-78067594 None:intergenic
ACTGAGACGGATGGTGGATC+TGG 0.365420 1.1:-78067721 None:intergenic
TAGTTGAGGTGTGGTGGTGG+TGG 0.370870 1.1:-78065539 None:intergenic
CGGTTGACGGCGTTGGAGGT+TGG 0.372039 1.1:-78065493 None:intergenic
ACTGCACATCAGACGGAGTT+TGG 0.374152 1.1:-78065636 None:intergenic
ATTGGTTCTGCTGTGGTTGT+TGG 0.379755 1.1:+78066550 MS.gene71770:CDS
TGATGAACAGTTTGCTCAAA+TGG 0.382086 1.1:+78066423 MS.gene71770:CDS
GGATAGTATGTAGGAATTGC+AGG 0.382162 1.1:-78067383 None:intergenic
CAGAAATATTGTAACCTTGT+TGG 0.382832 1.1:-78067466 None:intergenic
CAGCAGCAGCAGTTTATTCA+TGG 0.391314 1.1:+78067338 MS.gene71770:CDS
CATCAGAGAATACCCTATTC+TGG 0.394884 1.1:-78066579 None:intergenic
CCTGTACATGTTGCTGCACC+TGG 0.396429 1.1:-78067166 None:intergenic
GCGGCGGTTGGTGTTCCAAT+TGG 0.402499 1.1:+78066532 MS.gene71770:CDS
TGGTGGTTCTGGTGGTGTTA+GGG 0.407877 1.1:+78066339 MS.gene71770:CDS
GGATGCTGTGCAGGAACTTC+CGG 0.414421 1.1:-78067881 None:intergenic
TGCTGTTGATGCTGACTTGT+AGG 0.418339 1.1:-78067683 None:intergenic
TGTTGGTGATTACCAGAATA+GGG 0.419360 1.1:+78066567 MS.gene71770:CDS
TGTTCCTGATTCGCCTATGA+TGG 0.422549 1.1:+78066237 MS.gene71770:CDS
AACGAATCTAGGTCTTCGTT+TGG 0.425475 1.1:-78065824 None:intergenic
GGTCTTGATGATGATGTTGC+TGG 0.426742 1.1:+78066112 MS.gene71770:CDS
CTCCGTCTGATGTGCAGTTA+CGG 0.430728 1.1:+78065641 MS.gene71770:CDS
CCTGATGGTGTTTCTCAACC+TGG 0.431504 1.1:+78066172 MS.gene71770:CDS
GTTGACGGCGTTGGAGGTTG+GGG 0.431698 1.1:-78065491 None:intergenic
CAACCTCCAACGCCGTCAAC+CGG 0.431862 1.1:+78065494 MS.gene71770:CDS
AGGGGAGGAATCAACGGAAT+CGG 0.433576 1.1:-78065564 None:intergenic
GCAAACCTTGAAACTGAATC+AGG 0.434694 1.1:-78066796 None:intergenic
TTGTTGGTGATTACCAGAAT+AGG 0.438247 1.1:+78066566 MS.gene71770:CDS
GAGGCTGTTGTTGCTGCTGA+TGG 0.438597 1.1:-78067250 None:intergenic
CCAACCGCCGCCAGCGTAGT+TGG 0.439807 1.1:-78066520 None:intergenic
ACCTCGATTAAGCGACGAAA+CGG 0.444945 1.1:-78066050 None:intergenic
ATTTGCTCTTGATAAACAAC+AGG 0.445416 1.1:-78067077 None:intergenic
GCTGCTTACAGAGCTGCAAC+TGG 0.449004 1.1:+78067635 MS.gene71770:CDS
AGCTGCTACTATGATGCAAC+CGG 0.450983 1.1:+78067862 MS.gene71770:CDS
TCAAGCTCAGGCACAATCTC+AGG 0.452943 1.1:+78066693 MS.gene71770:CDS
CTCGATCCTACTGTTAGATC+CGG 0.457694 1.1:+78065998 MS.gene71770:CDS
TGATGGGGCTGTTGCTGTGA+TGG 0.459372 1.1:-78067413 None:intergenic
TAGTAGCAGCTGCCATGGTC+TGG 0.462175 1.1:-78067850 None:intergenic
GACATAACAGAGAGCTTTGT+CGG 0.465413 1.1:-78065687 None:intergenic
CCGTCTGACGGATGCTGTGC+AGG 0.467762 1.1:-78067890 None:intergenic
TGGTTCTTTGATACCATAAA+CGG 0.472006 1.1:+78066025 MS.gene71770:CDS
TTACAATATTTCTGTGCAGC+AGG 0.475574 1.1:+78067475 MS.gene71770:CDS
GTAGGAACTTGCACAAATTG+AGG 0.475620 1.1:-78067665 None:intergenic
TGGACAGAGGCTACAGGATG+AGG 0.477050 1.1:+78066459 MS.gene71770:CDS
TAAATCTTCATCGGTTGAAA+CGG 0.478449 1.1:-78065852 None:intergenic
TGCGGCTGATGTTGAGGTTG+TGG 0.481004 1.1:-78067290 None:intergenic
GCCGCCAGCGTAGTTGGCAC+TGG 0.484966 1.1:-78066514 None:intergenic
CAGTTTGCTCAAATGGTTGT+TGG 0.485362 1.1:+78066430 MS.gene71770:CDS
ACAACCACAGCAGAACCAAT+TGG 0.486447 1.1:-78066547 None:intergenic
GGTCCGGTTGACGGCGTTGG+AGG 0.489230 1.1:-78065497 None:intergenic
TACATAGTAAACCTGGTGAT+GGG 0.489469 1.1:-78067429 None:intergenic
TTGGATGTGGCTGGAGGGAA+AGG 0.491131 1.1:-78065617 None:intergenic
TTACAATTCCCAAAAGATCC+AGG 0.491686 1.1:-78066190 None:intergenic
GCAGCAGCAGCAGGATCAGA+AGG 0.491807 1.1:+78066390 MS.gene71770:CDS
GGTGGTCCGGTTGACGGCGT+TGG 0.493691 1.1:-78065500 None:intergenic
GTGTGGTGGTGGTGGAGCCA+CGG 0.495167 1.1:-78065531 None:intergenic
GATAACGGTGGTCCGGTTGA+CGG 0.499187 1.1:-78065506 None:intergenic
GGGTAGTTGAGGTGTGGTGG+TGG 0.500900 1.1:-78065542 None:intergenic
TGAGAGTAGTATACTTGAGC+AGG 0.501127 1.1:-78067797 None:intergenic
CGATCCACATGGTAGGATCC+AGG 0.502009 1.1:+78067148 MS.gene71770:CDS
GGTGGAGCCACGGAGGATAA+CGG 0.503298 1.1:-78065521 None:intergenic
TGCTGCTTCATGCCGTCTGA+CGG 0.504939 1.1:-78067902 None:intergenic
TGTTGCTGTGATGGATATAC+AGG 0.506750 1.1:-78067404 None:intergenic
CACGGAGGATAACGGTGGTC+CGG 0.508705 1.1:-78065513 None:intergenic
GACGAAGAAGTCTCCATCAT+AGG 0.509913 1.1:-78066250 None:intergenic
GAATTGTAAGAATTTGAAGC+AGG 0.512443 1.1:+78066204 MS.gene71770:CDS
AAAGTCAAGTGGCGGTGGCT+CGG 0.513401 1.1:+78066762 MS.gene71770:CDS
CATATTGAACAAGGTTCCAC+TGG 0.513758 1.1:+78066142 MS.gene71770:CDS
TGGTACTGTGAAGGCATTGT+GGG 0.515032 1.1:-78067830 None:intergenic
TAACAGAGAGCTTTGTCGGT+TGG 0.516165 1.1:-78065683 None:intergenic
CAGCAACATGTACAGGATCC+TGG 0.517129 1.1:+78067173 MS.gene71770:CDS
CTGAGACGGATGGTGGATCT+GGG 0.517543 1.1:-78067720 None:intergenic
ACCTGTGGCTGAGGAGTTGG+TGG 0.517587 1.1:-78066643 None:intergenic
TCGGGGTAGTTGAGGTGTGG+TGG 0.520239 1.1:-78065545 None:intergenic
GTAGTTGGCACTGGAGGATG+AGG 0.520654 1.1:-78066505 None:intergenic
AGCAGCAGCAGTTTATTCAT+GGG 0.521183 1.1:+78067339 MS.gene71770:CDS
CCAACTACGCTGGCGGCGGT+TGG 0.521638 1.1:+78066520 MS.gene71770:CDS
TATTCATAAGCATAACTGGC+AGG 0.521937 1.1:-78067767 None:intergenic
TGCTGCTGCGGCTGATGTTG+AGG 0.522699 1.1:-78067296 None:intergenic
TTGTTGAACCAATGTGGTGG+GGG 0.524626 1.1:-78067555 None:intergenic
CCAGGTGCAGCAACATGTAC+AGG 0.525477 1.1:+78067166 MS.gene71770:CDS
TCAAGCTCAAAATCAAGCTC+AGG 0.526325 1.1:+78066681 MS.gene71770:CDS
GGCAGCAGAATTAGGAGCCA+TGG 0.527937 1.1:-78067744 None:intergenic
AGACGGAGTTTGGATGTGGC+TGG 0.531377 1.1:-78065626 None:intergenic
GAAGGCATTGTGGGCGCCAT+AGG 0.531634 1.1:-78067821 None:intergenic
CAACAAAAGTCAAGTGGCGG+TGG 0.531834 1.1:+78066757 MS.gene71770:CDS
GTTCCCGCAACAACGACTCA+TGG 0.532318 1.1:+78065588 MS.gene71770:CDS
AGCTGATACTTGAAAGTGAA+AGG 0.533088 1.1:-78065800 None:intergenic
TTTGTTGAACCAATGTGGTG+GGG 0.535933 1.1:-78067556 None:intergenic
CCACCATCCGTCTCAGTCCA+TGG 0.536469 1.1:+78067727 MS.gene71770:CDS
AGAGCTTTGTCGGTTGGACG+AGG 0.539750 1.1:-78065677 None:intergenic
AGTATACTACTCTCAGCCTA+TGG 0.542313 1.1:+78067805 MS.gene71770:CDS
CGTCCCATGAGTCGTTGTTG+CGG 0.542603 1.1:-78065592 None:intergenic
AGTGCCAACTACGCTGGCGG+CGG 0.544621 1.1:+78066516 MS.gene71770:CDS
AAATTCAACCTGGAACTACA+AGG 0.546548 1.1:+78067102 MS.gene71770:CDS
TGGTATTGGACAGAGGCTAC+AGG 0.548332 1.1:+78066453 MS.gene71770:CDS
GAAAGGTCTTCCATTAAGCA+AGG 0.551628 1.1:-78065783 None:intergenic
CATCATAGTAGCAGCTGCCA+TGG 0.552855 1.1:-78067855 None:intergenic
TGAGCAGATTCAGGTTTCGA+TGG 0.553906 1.1:-78065956 None:intergenic
CCAGGTTGAGAAACACCATC+AGG 0.555428 1.1:-78066172 None:intergenic
GTAGGGGAGCACTTCTAATG+GGG 0.555535 1.1:-78067592 None:intergenic
ACCACCAACTCCTCAGCCAC+AGG 0.556074 1.1:+78066642 MS.gene71770:CDS
TCTGTGCAGCAGGCTAATAT+GGG 0.556647 1.1:+78067485 MS.gene71770:CDS
GGAACGAGGGGAGGAATCAA+CGG 0.556888 1.1:-78065570 None:intergenic
CAACGGAATCGGGGTAGTTG+AGG 0.557276 1.1:-78065553 None:intergenic
ATTCTCTGATGATGAGAGAT+CGG 0.557288 1.1:+78066591 MS.gene71770:CDS
GGATATACAGGATAGTATGT+AGG 0.557743 1.1:-78067392 None:intergenic
TCCTCCAGTGCCAACTACGC+TGG 0.559724 1.1:+78066510 MS.gene71770:CDS
TGCTGTTGCAGCAAATAACC+AGG 0.561601 1.1:-78067191 None:intergenic
CTACTGTTAGATCCGGTGAA+TGG 0.563307 1.1:+78066005 MS.gene71770:CDS
GGACAGAGGCTACAGGATGA+GGG 0.567639 1.1:+78066460 MS.gene71770:CDS
CACCGTAACTGCACATCAGA+CGG 0.574389 1.1:-78065643 None:intergenic
GGTTGCTGCGGCTGATGTTG+AGG 0.576485 1.1:-78067269 None:intergenic
GTCTTGATGATGATGTTGCT+GGG 0.576576 1.1:+78066113 MS.gene71770:CDS
GTTGAAGATGGTGGTTCTGG+TGG 0.576663 1.1:+78066331 MS.gene71770:CDS
TTTGCTCAAATGGTTGTTGG+TGG 0.576841 1.1:+78066433 MS.gene71770:CDS
AAACGGAGATTAACGAATCT+AGG 0.578203 1.1:-78065835 None:intergenic
ACAACCTGTGGCTGAGGAGT+TGG 0.580416 1.1:-78066646 None:intergenic
GGATAAATCCGCGAGTGAGG+TGG 0.580510 1.1:-78065744 None:intergenic
ACTTGAACAACCTGTGGCTG+AGG 0.580822 1.1:-78066652 None:intergenic
GACAAAGCTCTCTGTTATGT+CGG 0.581377 1.1:+78065689 MS.gene71770:CDS
GCCGTTTCGTCGCTTAATCG+AGG 0.581594 1.1:+78066049 MS.gene71770:CDS
GTACATAGTAAACCTGGTGA+TGG 0.582079 1.1:-78067430 None:intergenic
CCATGGACTGAGACGGATGG+TGG 0.582286 1.1:-78067727 None:intergenic
ATTAGGGTGCATGTTGAAGA+TGG 0.582359 1.1:+78066319 MS.gene71770:CDS
GAAATATTGTAACCTTGTTG+GGG 0.583775 1.1:-78067464 None:intergenic
GAGTCGTTGTTGCGGGAACG+AGG 0.584939 1.1:-78065584 None:intergenic
TTCCCGCAACAACGACTCAT+GGG 0.585174 1.1:+78065589 MS.gene71770:CDS
GTCGTTGTTGCGGGAACGAG+GGG 0.585961 1.1:-78065582 None:intergenic
ATCGGATCATGGTGTGCCTG+TGG 0.586106 1.1:+78066609 MS.gene71770:CDS
ATTCATAAGCATAACTGGCA+GGG 0.588015 1.1:-78067766 None:intergenic
GGAGGCAAATTCGCCAAAGA+CGG 0.588179 1.1:-78066295 None:intergenic
CCTACCCAAAACTGAAATGA+CGG 0.588235 1.1:+78067610 MS.gene71770:CDS
TTCATAAGCATAACTGGCAG+GGG 0.590768 1.1:-78067765 None:intergenic
TCCACTGGAGAAGCTCCTGA+TGG 0.593224 1.1:+78066157 MS.gene71770:CDS
TGAAGCTGTTGTTGCTGCTG+CGG 0.593547 1.1:-78067308 None:intergenic
TGTTCCAATTGGTTCTGCTG+TGG 0.593696 1.1:+78066543 MS.gene71770:CDS
AGACGAAGAAGTCGAACCAA+AGG 0.594657 1.1:-78066272 None:intergenic
ACAGCAACAGCCCCATCACC+AGG 0.596464 1.1:+78067418 MS.gene71770:CDS
CGGAGTTTGGATGTGGCTGG+AGG 0.598235 1.1:-78065623 None:intergenic
TGAACGCGCCACCTCACTCG+CGG 0.598732 1.1:+78065736 MS.gene71770:CDS
AGTCGTTGTTGCGGGAACGA+GGG 0.600229 1.1:-78065583 None:intergenic
GCCAGCGTAGTTGGCACTGG+AGG 0.600507 1.1:-78066511 None:intergenic
ACATAGTAAACCTGGTGATG+GGG 0.601720 1.1:-78067428 None:intergenic
CATCAGACGGAGTTTGGATG+TGG 0.601884 1.1:-78065630 None:intergenic
GCAGCAGCAGTTTATTCATG+GGG 0.604368 1.1:+78067340 MS.gene71770:CDS
GTTGTTGCGGGAACGAGGGG+AGG 0.604508 1.1:-78065579 None:intergenic
CTTGAAACTGAATCAGGAGA+AGG 0.605496 1.1:-78066790 None:intergenic
CTGGTACTGTGAAGGCATTG+TGG 0.606843 1.1:-78067831 None:intergenic
GATGATGAGAGATCGGATCA+TGG 0.609090 1.1:+78066598 MS.gene71770:CDS
CTGGATCCTACCATGTGGAT+CGG 0.610151 1.1:-78067147 None:intergenic
GGAGTTTGGATGTGGCTGGA+GGG 0.611331 1.1:-78065622 None:intergenic
TTGCAGGTACATAGTAAACC+TGG 0.612429 1.1:-78067436 None:intergenic
CCTGCACAGCATCCGTCAGA+CGG 0.613220 1.1:+78067890 MS.gene71770:CDS
CGTGGATAAATCCGCGAGTG+AGG 0.614369 1.1:-78065747 None:intergenic
GATAGTATGTAGGAATTGCA+GGG 0.616127 1.1:-78067382 None:intergenic
GGGAGGAATCAACGGAATCG+GGG 0.618967 1.1:-78065562 None:intergenic
GGTATCAAAGAACCATTCAC+CGG 0.620315 1.1:-78066017 None:intergenic
ATCAATTTGTCCGATCCACA+TGG 0.621127 1.1:+78067137 MS.gene71770:CDS
TCGGATCATGGTGTGCCTGT+GGG 0.622213 1.1:+78066610 MS.gene71770:CDS
GGGAATAATCATATTGAACA+AGG 0.623357 1.1:+78066133 MS.gene71770:CDS
TCAACATGCACCCTAATAGG+AGG 0.625269 1.1:-78066313 None:intergenic
CATTCACCGGATCTAACAGT+AGG 0.628644 1.1:-78066004 None:intergenic
GAGCAAATTCAAATTCAACC+TGG 0.628952 1.1:+78067092 MS.gene71770:CDS
ACAGTAGGATCGAGAATTTG+CGG 0.630234 1.1:-78065989 None:intergenic
TCCAGTGCCAACTACGCTGG+CGG 0.630709 1.1:+78066513 MS.gene71770:CDS
GCCATGGTCTGGTACTGTGA+AGG 0.631831 1.1:-78067839 None:intergenic
TTAGGAGCCATGGACTGAGA+CGG 0.636364 1.1:-78067734 None:intergenic
CCTGCAAGACAGCCCCAACA+AGG 0.639304 1.1:+78067452 MS.gene71770:CDS
ACCATCAGGAGCTTCTCCAG+TGG 0.641015 1.1:-78066158 None:intergenic
ATTTGTCCGATCCACATGGT+AGG 0.641689 1.1:+78067141 MS.gene71770:CDS
GCTTACAGAGCTGCAACTGG+AGG 0.643603 1.1:+78067638 MS.gene71770:CDS
TGGTGGTGGTGGAGCCACGG+AGG 0.644740 1.1:-78065528 None:intergenic
CAATTTCAACAAAAGTCAAG+TGG 0.647060 1.1:+78066751 MS.gene71770:CDS
GAGCTTTGTCGGTTGGACGA+GGG 0.650315 1.1:-78065676 None:intergenic
CGGTTGGACGAGGGACGATG+TGG 0.650967 1.1:-78065667 None:intergenic
TCAACCTGGAACTACAAGGG+TGG 0.652554 1.1:+78067106 MS.gene71770:CDS
TCTGCTAGAAGGGATTGTTG+TGG 0.662115 1.1:-78067516 None:intergenic
GTTGGCACTGGAGGATGAGG+CGG 0.662967 1.1:-78066502 None:intergenic
GGTTGAACTTGAACAACCTG+TGG 0.669833 1.1:-78066658 None:intergenic
CGTCTGATGTGCAGTTACGG+TGG 0.670865 1.1:+78065644 MS.gene71770:CDS
GAATCGGGGTAGTTGAGGTG+TGG 0.676463 1.1:-78065548 None:intergenic
GAGCCATGGACTGAGACGGA+TGG 0.677383 1.1:-78067730 None:intergenic
TTTCAACAAAAGTCAAGTGG+CGG 0.678298 1.1:+78066754 MS.gene71770:CDS
AATTCAACCTGGAACTACAA+GGG 0.679111 1.1:+78067103 MS.gene71770:CDS
AGGGTGCATGTTGAAGATGG+TGG 0.679137 1.1:+78066322 MS.gene71770:CDS
AAAGCTCTCTGTTATGTCGG+CGG 0.682153 1.1:+78065692 MS.gene71770:CDS
TGTTGAGGTTGTGGTTGCTG+CGG 0.693955 1.1:-78067281 None:intergenic
CGGACCACCGTTATCCTCCG+TGG 0.696266 1.1:+78065514 MS.gene71770:CDS
CAGCAGCAGTTTATTCATGG+GGG 0.698822 1.1:+78067341 MS.gene71770:CDS
GCCTTCACAGTACCAGACCA+TGG 0.702903 1.1:+78067838 MS.gene71770:CDS
GTAGGATCGAGAATTTGCGG+TGG 0.710077 1.1:-78065986 None:intergenic
TTGTTGGTGGTATTGGACAG+AGG 0.725008 1.1:+78066446 MS.gene71770:CDS
ACTTGCTTATAGTGGCTGTG+AGG 0.735355 1.1:-78067933 None:intergenic
GGAGCCACGGAGGATAACGG+TGG 0.735804 1.1:-78065518 None:intergenic
TGCACCTGGATCCTACCATG+TGG 0.740835 1.1:-78067152 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAATGTTTGTTTACAT+AGG + chr1.1:78066880-78066899 MS.gene71770:intron 15.0%
!! AAAACAAGAATTACAAAAAC+AGG - chr1.1:78066841-78066860 None:intergenic 20.0%
!!! CTTGTTTTATATTTGTGATA+TGG + chr1.1:78066853-78066872 MS.gene71770:intron 20.0%
! AGAAATATTGTAACCTTGTT+GGG - chr1.1:78067468-78067487 None:intergenic 25.0%
! GAATTACAAAAACAGGTAAA+TGG - chr1.1:78066834-78066853 None:intergenic 25.0%
! TGATTATTATAAACCTAGAG+TGG + chr1.1:78066965-78066984 MS.gene71770:intron 25.0%
!! CATGTTTTCTAAATCTTCAT+CGG - chr1.1:78065864-78065883 None:intergenic 25.0%
AGCATATTCATAAGCATAAC+TGG - chr1.1:78067774-78067793 None:intergenic 30.0%
ATTTGCTCTTGATAAACAAC+AGG - chr1.1:78067080-78067099 None:intergenic 30.0%
CAATTTCAACAAAAGTCAAG+TGG + chr1.1:78066751-78066770 MS.gene71770:CDS 30.0%
CAGAAATATTGTAACCTTGT+TGG - chr1.1:78067469-78067488 None:intergenic 30.0%
GAAATATTGTAACCTTGTTG+GGG - chr1.1:78067467-78067486 None:intergenic 30.0%
GGGAATAATCATATTGAACA+AGG + chr1.1:78066133-78066152 MS.gene71770:CDS 30.0%
TACAAAAACAGGTAAATGGA+AGG - chr1.1:78066830-78066849 None:intergenic 30.0%
TGGTTCTTTGATACCATAAA+CGG + chr1.1:78066025-78066044 MS.gene71770:CDS 30.0%
TTATTATAAACCTAGAGTGG+TGG + chr1.1:78066968-78066987 MS.gene71770:intron 30.0%
! CTTGACTTTTGTTGAAATTG+AGG - chr1.1:78066751-78066770 None:intergenic 30.0%
! GAATTGTAAGAATTTGAAGC+AGG + chr1.1:78066204-78066223 MS.gene71770:CDS 30.0%
! GGTTTAGCAATATCTGAAAT+AGG + chr1.1:78066989-78067008 MS.gene71770:intron 30.0%
! TAAATCTTCATCGGTTGAAA+CGG - chr1.1:78065855-78065874 None:intergenic 30.0%
! TCTTCTGTGAATCATCTTTT+AGG + chr1.1:78066091-78066110 MS.gene71770:CDS 30.0%
AAACGGAGATTAACGAATCT+AGG - chr1.1:78065838-78065857 None:intergenic 35.0%
AAATTCAACCTGGAACTACA+AGG + chr1.1:78067102-78067121 MS.gene71770:CDS 35.0%
AATTCAACCTGGAACTACAA+GGG + chr1.1:78067103-78067122 MS.gene71770:CDS 35.0%
AGCTGATACTTGAAAGTGAA+AGG - chr1.1:78065803-78065822 None:intergenic 35.0%
ATTCATAAGCATAACTGGCA+GGG - chr1.1:78067769-78067788 None:intergenic 35.0%
GAGCAAATTCAAATTCAACC+TGG + chr1.1:78067092-78067111 MS.gene71770:CDS 35.0%
GATAGTATGTAGGAATTGCA+GGG - chr1.1:78067385-78067404 None:intergenic 35.0%
GGATATACAGGATAGTATGT+AGG - chr1.1:78067395-78067414 None:intergenic 35.0%
TACATAGTAAACCTGGTGAT+GGG - chr1.1:78067432-78067451 None:intergenic 35.0%
TATTCATAAGCATAACTGGC+AGG - chr1.1:78067770-78067789 None:intergenic 35.0%
TTACAATTCCCAAAAGATCC+AGG - chr1.1:78066193-78066212 None:intergenic 35.0%
TTTCAACAAAAGTCAAGTGG+CGG + chr1.1:78066754-78066773 MS.gene71770:CDS 35.0%
! ATTCTCTGATGATGAGAGAT+CGG + chr1.1:78066591-78066610 MS.gene71770:CDS 35.0%
! ATTTTGTTGAACCAATGTGG+TGG - chr1.1:78067561-78067580 None:intergenic 35.0%
! CAATATCTGAAATAGGCTGT+TGG + chr1.1:78066996-78067015 MS.gene71770:intron 35.0%
! TCTTCCATTAAGCAAGGTTT+TGG - chr1.1:78065780-78065799 None:intergenic 35.0%
! TGATGAACAGTTTGCTCAAA+TGG + chr1.1:78066423-78066442 MS.gene71770:CDS 35.0%
! TGCATTTTGTTGAACCAATG+TGG - chr1.1:78067564-78067583 None:intergenic 35.0%
! TTACAATATTTCTGTGCAGC+AGG + chr1.1:78067475-78067494 MS.gene71770:CDS 35.0%
! TTTCTCAACCTGGATCTTTT+GGG + chr1.1:78066182-78066201 MS.gene71770:CDS 35.0%
! TTTTGTTGAACCAATGTGGT+GGG - chr1.1:78067560-78067579 None:intergenic 35.0%
!! TGTTGGTGATTACCAGAATA+GGG + chr1.1:78066567-78066586 MS.gene71770:CDS 35.0%
!! TTGTTGGTGATTACCAGAAT+AGG + chr1.1:78066566-78066585 MS.gene71770:CDS 35.0%
AACGAATCTAGGTCTTCGTT+TGG - chr1.1:78065827-78065846 None:intergenic 40.0%
ACAGTAGGATCGAGAATTTG+CGG - chr1.1:78065992-78066011 None:intergenic 40.0%
AGAAAAAGACGAATTCGCGA+GGG - chr1.1:78065932-78065951 None:intergenic 40.0%
AGCAGCAGCAGTTTATTCAT+GGG + chr1.1:78067339-78067358 MS.gene71770:CDS 40.0%
AGTATACTACTCTCAGCCTA+TGG + chr1.1:78067805-78067824 MS.gene71770:CDS 40.0%
ATCAATTTGTCCGATCCACA+TGG + chr1.1:78067137-78067156 MS.gene71770:CDS 40.0%
ATTAGGGTGCATGTTGAAGA+TGG + chr1.1:78066319-78066338 MS.gene71770:CDS 40.0%
CATATTGAACAAGGTTCCAC+TGG + chr1.1:78066142-78066161 MS.gene71770:CDS 40.0%
CATCAGAGAATACCCTATTC+TGG - chr1.1:78066582-78066601 None:intergenic 40.0%
CCTACCCAAAACTGAAATGA+CGG + chr1.1:78067610-78067629 MS.gene71770:CDS 40.0%
CTCTCCAAAACCTTGCTTAA+TGG + chr1.1:78065773-78065792 MS.gene71770:CDS 40.0%
CTTCTCCTGATTCAGTTTCA+AGG + chr1.1:78066791-78066810 MS.gene71770:CDS 40.0%
CTTGAAACTGAATCAGGAGA+AGG - chr1.1:78066793-78066812 None:intergenic 40.0%
GAAAGGTCTTCCATTAAGCA+AGG - chr1.1:78065786-78065805 None:intergenic 40.0%
GACAAAGCTCTCTGTTATGT+CGG + chr1.1:78065689-78065708 MS.gene71770:CDS 40.0%
GCAAACCTTGAAACTGAATC+AGG - chr1.1:78066799-78066818 None:intergenic 40.0%
GGATAGTATGTAGGAATTGC+AGG - chr1.1:78067386-78067405 None:intergenic 40.0%
GGTATCAAAGAACCATTCAC+CGG - chr1.1:78066020-78066039 None:intergenic 40.0%
GTACATAGTAAACCTGGTGA+TGG - chr1.1:78067433-78067452 None:intergenic 40.0%
GTAGGAACTTGCACAAATTG+AGG - chr1.1:78067668-78067687 None:intergenic 40.0%
TATTGCTAAACCACCACTCT+AGG - chr1.1:78066981-78067000 None:intergenic 40.0%
TCAAGCTCAAAATCAAGCTC+AGG + chr1.1:78066681-78066700 MS.gene71770:CDS 40.0%
TCTTCAACATGCACCCTAAT+AGG - chr1.1:78066319-78066338 None:intergenic 40.0%
TGAGAGTAGTATACTTGAGC+AGG - chr1.1:78067800-78067819 None:intergenic 40.0%
TTCATAAGCATAACTGGCAG+GGG - chr1.1:78067768-78067787 None:intergenic 40.0%
TTGCAGGTACATAGTAAACC+TGG - chr1.1:78067439-78067458 None:intergenic 40.0%
TTTGCTCAAATGGTTGTTGG+TGG + chr1.1:78066433-78066452 MS.gene71770:CDS 40.0%
TTTGTTGAACCAATGTGGTG+GGG - chr1.1:78067559-78067578 None:intergenic 40.0%
! ACATAGTAAACCTGGTGATG+GGG - chr1.1:78067431-78067450 None:intergenic 40.0%
! CAGTTTGCTCAAATGGTTGT+TGG + chr1.1:78066430-78066449 MS.gene71770:CDS 40.0%
! GACATAACAGAGAGCTTTGT+CGG - chr1.1:78065690-78065709 None:intergenic 40.0%
! GTTTCTCAACCTGGATCTTT+TGG + chr1.1:78066181-78066200 MS.gene71770:CDS 40.0%
! TATCTGAAATAGGCTGTTGG+TGG + chr1.1:78066999-78067018 MS.gene71770:intron 40.0%
! TGAGCTTGATTTTGAGCTTG+AGG - chr1.1:78066682-78066701 None:intergenic 40.0%
!! CAAATGGTTGTTGGTGGTAT+TGG + chr1.1:78066439-78066458 MS.gene71770:CDS 40.0%
!! GTCTTGATGATGATGTTGCT+GGG + chr1.1:78066113-78066132 MS.gene71770:CDS 40.0%
!! TGTTGCTGTGATGGATATAC+AGG - chr1.1:78067407-78067426 None:intergenic 40.0%
!!! CATTAAGCAAGGTTTTGGAG+AGG - chr1.1:78065775-78065794 None:intergenic 40.0%
!!! CGTCATTTCAGTTTTGGGTA+GGG - chr1.1:78067612-78067631 None:intergenic 40.0%
!!! GTCATTTCAGTTTTGGGTAG+GGG - chr1.1:78067611-78067630 None:intergenic 40.0%
AAAGCTCTCTGTTATGTCGG+CGG + chr1.1:78065692-78065711 MS.gene71770:CDS 45.0%
ACAACCACAGCAGAACCAAT+TGG - chr1.1:78066550-78066569 None:intergenic 45.0%
ACCTCGATTAAGCGACGAAA+CGG - chr1.1:78066053-78066072 None:intergenic 45.0%
AGACGAAGAAGTCGAACCAA+AGG - chr1.1:78066275-78066294 None:intergenic 45.0%
AGCTGCTACTATGATGCAAC+CGG + chr1.1:78067862-78067881 MS.gene71770:CDS 45.0%
ATGGAGACTTCTTCGTCCTT+TGG + chr1.1:78066256-78066275 MS.gene71770:CDS 45.0%
ATTTGTCCGATCCACATGGT+AGG + chr1.1:78067141-78067160 MS.gene71770:CDS 45.0%
CAGAAAAAGACGAATTCGCG+AGG - chr1.1:78065933-78065952 None:intergenic 45.0%
CAGCAGCAGCAGTTTATTCA+TGG + chr1.1:78067338-78067357 MS.gene71770:CDS 45.0%
CAGCAGCAGTTTATTCATGG+GGG + chr1.1:78067341-78067360 MS.gene71770:CDS 45.0%
CATTCACCGGATCTAACAGT+AGG - chr1.1:78066007-78066026 None:intergenic 45.0%
CTACTGTTAGATCCGGTGAA+TGG + chr1.1:78066005-78066024 MS.gene71770:CDS 45.0%
CTCGATCCTACTGTTAGATC+CGG + chr1.1:78065998-78066017 MS.gene71770:CDS 45.0%
GACGAAGAAGTCTCCATCAT+AGG - chr1.1:78066253-78066272 None:intergenic 45.0%
GATGATGAGAGATCGGATCA+TGG + chr1.1:78066598-78066617 MS.gene71770:CDS 45.0%
GCAGCAGCAGTTTATTCATG+GGG + chr1.1:78067340-78067359 MS.gene71770:CDS 45.0%
GGAATTGACTGAGCAGATTC+AGG - chr1.1:78065968-78065987 None:intergenic 45.0%
GGCGAATTTGCCTCCTATTA+GGG + chr1.1:78066303-78066322 MS.gene71770:CDS 45.0%
GGTTGAACTTGAACAACCTG+TGG - chr1.1:78066661-78066680 None:intergenic 45.0%
TCAACATGCACCCTAATAGG+AGG - chr1.1:78066316-78066335 None:intergenic 45.0%
TCTGCTAGAAGGGATTGTTG+TGG - chr1.1:78067519-78067538 None:intergenic 45.0%
TCTGTGCAGCAGGCTAATAT+GGG + chr1.1:78067485-78067504 MS.gene71770:CDS 45.0%
TGCTGTTGCAGCAAATAACC+AGG - chr1.1:78067194-78067213 None:intergenic 45.0%
TGGCGAATTTGCCTCCTATT+AGG + chr1.1:78066302-78066321 MS.gene71770:CDS 45.0%
TTCTGTGCAGCAGGCTAATA+TGG + chr1.1:78067484-78067503 MS.gene71770:CDS 45.0%
TTGTTGAACCAATGTGGTGG+GGG - chr1.1:78067558-78067577 None:intergenic 45.0%
! AGCAGCCGTCATTTCAGTTT+TGG - chr1.1:78067618-78067637 None:intergenic 45.0%
! AGCAGGATCAGAAGGTTTTG+GGG + chr1.1:78066398-78066417 MS.gene71770:CDS 45.0%
! CAAATTGTTGTTGCTGCTGC+TGG - chr1.1:78067226-78067245 None:intergenic 45.0%
! CAGCAGGATCAGAAGGTTTT+GGG + chr1.1:78066397-78066416 MS.gene71770:CDS 45.0%
! CATGTTGAAGATGGTGGTTC+TGG + chr1.1:78066328-78066347 MS.gene71770:CDS 45.0%
! GCAGCCGTCATTTCAGTTTT+GGG - chr1.1:78067617-78067636 None:intergenic 45.0%
! GGTGGTTTTCTATATCCCAC+AGG - chr1.1:78066628-78066647 None:intergenic 45.0%
! TAACAGAGAGCTTTGTCGGT+TGG - chr1.1:78065686-78065705 None:intergenic 45.0%
! TGAGCAGATTCAGGTTTCGA+TGG - chr1.1:78065959-78065978 None:intergenic 45.0%
! TGTTCCTGATTCGCCTATGA+TGG + chr1.1:78066237-78066256 MS.gene71770:CDS 45.0%
!! ATTGGTTCTGCTGTGGTTGT+TGG + chr1.1:78066550-78066569 MS.gene71770:CDS 45.0%
!! GGTCTTGATGATGATGTTGC+TGG + chr1.1:78066112-78066131 MS.gene71770:CDS 45.0%
!! TGCTGTTGATGCTGACTTGT+AGG - chr1.1:78067686-78067705 None:intergenic 45.0%
!! TGGTACTGTGAAGGCATTGT+GGG - chr1.1:78067833-78067852 None:intergenic 45.0%
!! TGTTCCAATTGGTTCTGCTG+TGG + chr1.1:78066543-78066562 MS.gene71770:CDS 45.0%
!! TTGTTGGTGGTATTGGACAG+AGG + chr1.1:78066446-78066465 MS.gene71770:CDS 45.0%
!!! CCGTCATTTCAGTTTTGGGT+AGG - chr1.1:78067613-78067632 None:intergenic 45.0%
!!! GATTTTGGGGTCTGCTAGAA+GGG - chr1.1:78067529-78067548 None:intergenic 45.0%
ACTGCACATCAGACGGAGTT+TGG - chr1.1:78065639-78065658 None:intergenic 50.0%
ACTTGAACAACCTGTGGCTG+AGG - chr1.1:78066655-78066674 None:intergenic 50.0%
AGGGGAGGAATCAACGGAAT+CGG - chr1.1:78065567-78065586 None:intergenic 50.0%
AGGGTGCATGTTGAAGATGG+TGG + chr1.1:78066322-78066341 MS.gene71770:CDS 50.0%
CAACAAAAGTCAAGTGGCGG+TGG + chr1.1:78066757-78066776 MS.gene71770:CDS 50.0%
CACCGTAACTGCACATCAGA+CGG - chr1.1:78065646-78065665 None:intergenic 50.0%
CAGCAACATGTACAGGATCC+TGG + chr1.1:78067173-78067192 MS.gene71770:CDS 50.0%
CATCAGACGGAGTTTGGATG+TGG - chr1.1:78065633-78065652 None:intergenic 50.0%
CATCATAGTAGCAGCTGCCA+TGG - chr1.1:78067858-78067877 None:intergenic 50.0%
CTCCGTCTGATGTGCAGTTA+CGG + chr1.1:78065641-78065660 MS.gene71770:CDS 50.0%
CTGGATCCTACCATGTGGAT+CGG - chr1.1:78067150-78067169 None:intergenic 50.0%
GACTTCTTCGTCTCCGTCTT+TGG + chr1.1:78066282-78066301 MS.gene71770:CDS 50.0%
GGAGGCAAATTCGCCAAAGA+CGG - chr1.1:78066298-78066317 None:intergenic 50.0%
GTAGGATCGAGAATTTGCGG+TGG - chr1.1:78065989-78066008 None:intergenic 50.0%
GTATCCACCCTTGTAGTTCC+AGG - chr1.1:78067113-78067132 None:intergenic 50.0%
GTCTCCATCATAGGCGAATC+AGG - chr1.1:78066244-78066263 None:intergenic 50.0%
TCAACCTGGAACTACAAGGG+TGG + chr1.1:78067106-78067125 MS.gene71770:CDS 50.0%
TCAAGCTCAGGCACAATCTC+AGG + chr1.1:78066693-78066712 MS.gene71770:CDS 50.0%
TGAAGCTGTTGTTGCTGCTG+CGG - chr1.1:78067311-78067330 None:intergenic 50.0%
TGTTGAGGTTGTGGTTGCTG+CGG - chr1.1:78067284-78067303 None:intergenic 50.0%
TTCCCGCAACAACGACTCAT+GGG + chr1.1:78065589-78065608 MS.gene71770:CDS 50.0%
! CCAGGTTGAGAAACACCATC+AGG - chr1.1:78066175-78066194 None:intergenic 50.0%
! CCTGATGGTGTTTCTCAACC+TGG + chr1.1:78066172-78066191 MS.gene71770:CDS 50.0%
! GCAGCAGGATCAGAAGGTTT+TGG + chr1.1:78066396-78066415 MS.gene71770:CDS 50.0%
! TGGTATTGGACAGAGGCTAC+AGG + chr1.1:78066453-78066472 MS.gene71770:CDS 50.0%
! TTAGGAGCCATGGACTGAGA+CGG - chr1.1:78067737-78067756 None:intergenic 50.0%
!! ATGGTGGTTCTGGTGGTGTT+AGG + chr1.1:78066338-78066357 MS.gene71770:CDS 50.0%
!! CTGGTACTGTGAAGGCATTG+TGG - chr1.1:78067834-78067853 None:intergenic 50.0%
!! GGTAGGGGAGCACTTCTAAT+GGG - chr1.1:78067596-78067615 None:intergenic 50.0%
!! GTAGGGGAGCACTTCTAATG+GGG - chr1.1:78067595-78067614 None:intergenic 50.0%
!! GTTGAAGATGGTGGTTCTGG+TGG + chr1.1:78066331-78066350 MS.gene71770:CDS 50.0%
!! TGGTGGTTCTGGTGGTGTTA+GGG + chr1.1:78066339-78066358 MS.gene71770:CDS 50.0%
!!! GGATTTTGGGGTCTGCTAGA+AGG - chr1.1:78067530-78067549 None:intergenic 50.0%
AAAGTCAAGTGGCGGTGGCT+CGG + chr1.1:78066762-78066781 MS.gene71770:CDS 55.0%
ACAACCTGTGGCTGAGGAGT+TGG - chr1.1:78066649-78066668 None:intergenic 55.0%
ACCATCAGGAGCTTCTCCAG+TGG - chr1.1:78066161-78066180 None:intergenic 55.0%
AGACGGAGTTTGGATGTGGC+TGG - chr1.1:78065629-78065648 None:intergenic 55.0%
AGTCGTTGTTGCGGGAACGA+GGG - chr1.1:78065586-78065605 None:intergenic 55.0%
ATCGGATCATGGTGTGCCTG+TGG + chr1.1:78066609-78066628 MS.gene71770:CDS 55.0%
CAACGGAATCGGGGTAGTTG+AGG - chr1.1:78065556-78065575 None:intergenic 55.0%
CCAGGTGCAGCAACATGTAC+AGG + chr1.1:78067166-78067185 MS.gene71770:CDS 55.0%
CCTGTACATGTTGCTGCACC+TGG - chr1.1:78067169-78067188 None:intergenic 55.0%
CGACGAAACGGCACCGTTTA+TGG - chr1.1:78066041-78066060 None:intergenic 55.0%
CGATCCACATGGTAGGATCC+AGG + chr1.1:78067148-78067167 MS.gene71770:CDS 55.0%
CGTCCCATGAGTCGTTGTTG+CGG - chr1.1:78065595-78065614 None:intergenic 55.0%
CGTCTGATGTGCAGTTACGG+TGG + chr1.1:78065644-78065663 MS.gene71770:CDS 55.0%
CGTGGATAAATCCGCGAGTG+AGG - chr1.1:78065750-78065769 None:intergenic 55.0%
GAATCGGGGTAGTTGAGGTG+TGG - chr1.1:78065551-78065570 None:intergenic 55.0%
GAGGCTGTTGTTGCTGCTGA+TGG - chr1.1:78067253-78067272 None:intergenic 55.0%
GCCATGGTCTGGTACTGTGA+AGG - chr1.1:78067842-78067861 None:intergenic 55.0%
GCCGTTTCGTCGCTTAATCG+AGG + chr1.1:78066049-78066068 MS.gene71770:CDS 55.0%
GCCTTCACAGTACCAGACCA+TGG + chr1.1:78067838-78067857 MS.gene71770:CDS 55.0%
GCTGCTTACAGAGCTGCAAC+TGG + chr1.1:78067635-78067654 MS.gene71770:CDS 55.0%
GCTTACAGAGCTGCAACTGG+AGG + chr1.1:78067638-78067657 MS.gene71770:CDS 55.0%
GGAACGAGGGGAGGAATCAA+CGG - chr1.1:78065573-78065592 None:intergenic 55.0%
GGACAGAGGCTACAGGATGA+GGG + chr1.1:78066460-78066479 MS.gene71770:CDS 55.0%
GGAGTTTGGATGTGGCTGGA+GGG - chr1.1:78065625-78065644 None:intergenic 55.0%
GGATAAATCCGCGAGTGAGG+TGG - chr1.1:78065747-78065766 None:intergenic 55.0%
GGATGCTGTGCAGGAACTTC+CGG - chr1.1:78067884-78067903 None:intergenic 55.0%
GGCAGCAGAATTAGGAGCCA+TGG - chr1.1:78067747-78067766 None:intergenic 55.0%
GGGAGGAATCAACGGAATCG+GGG - chr1.1:78065565-78065584 None:intergenic 55.0%
GGGGAGGAATCAACGGAATC+GGG - chr1.1:78065566-78065585 None:intergenic 55.0%
GTCCCATGAGTCGTTGTTGC+GGG - chr1.1:78065594-78065613 None:intergenic 55.0%
GTTCCCGCAACAACGACTCA+TGG + chr1.1:78065588-78065607 MS.gene71770:CDS 55.0%
TAGTAGCAGCTGCCATGGTC+TGG - chr1.1:78067853-78067872 None:intergenic 55.0%
TCCACTGGAGAAGCTCCTGA+TGG + chr1.1:78066157-78066176 MS.gene71770:CDS 55.0%
TCGGATCATGGTGTGCCTGT+GGG + chr1.1:78066610-78066629 MS.gene71770:CDS 55.0%
TGATGGGGCTGTTGCTGTGA+TGG - chr1.1:78067416-78067435 None:intergenic 55.0%
TGCACCTGGATCCTACCATG+TGG - chr1.1:78067155-78067174 None:intergenic 55.0%
TGCGGCTGATGTTGAGGTTG+TGG - chr1.1:78067293-78067312 None:intergenic 55.0%
TGGACAGAGGCTACAGGATG+AGG + chr1.1:78066459-78066478 MS.gene71770:CDS 55.0%
TTGGATGTGGCTGGAGGGAA+AGG - chr1.1:78065620-78065639 None:intergenic 55.0%
! AGAGCTTTGTCGGTTGGACG+AGG - chr1.1:78065680-78065699 None:intergenic 55.0%
! GAGCTTTGTCGGTTGGACGA+GGG - chr1.1:78065679-78065698 None:intergenic 55.0%
! GATAACGGTGGTCCGGTTGA+CGG - chr1.1:78065509-78065528 None:intergenic 55.0%
! GGTGGGGGTTGGAGGATTTT+GGG - chr1.1:78067543-78067562 None:intergenic 55.0%
! GTAGTTGGCACTGGAGGATG+AGG - chr1.1:78066508-78066527 None:intergenic 55.0%
! GTGGGGGTTGGAGGATTTTG+GGG - chr1.1:78067542-78067561 None:intergenic 55.0%
! TGAACCAATGTGGTGGGGGT+TGG - chr1.1:78067554-78067573 None:intergenic 55.0%
! TGCTGCTTCATGCCGTCTGA+CGG - chr1.1:78067905-78067924 None:intergenic 55.0%
! TGGTGGGGGTTGGAGGATTT+TGG - chr1.1:78067544-78067563 None:intergenic 55.0%
!! ACTGAGACGGATGGTGGATC+TGG - chr1.1:78067724-78067743 None:intergenic 55.0%
!! CTGAGACGGATGGTGGATCT+GGG - chr1.1:78067723-78067742 None:intergenic 55.0%
!! GGGTAGGGGAGCACTTCTAA+TGG - chr1.1:78067597-78067616 None:intergenic 55.0%
!! TAGTTGAGGTGTGGTGGTGG+TGG - chr1.1:78065542-78065561 None:intergenic 55.0%
ACAGCAACAGCCCCATCACC+AGG + chr1.1:78067418-78067437 MS.gene71770:CDS 60.0%
ACCACCAACTCCTCAGCCAC+AGG + chr1.1:78066642-78066661 MS.gene71770:CDS 60.0%
ACCTGTGGCTGAGGAGTTGG+TGG - chr1.1:78066646-78066665 None:intergenic 60.0%
CAACCTCCAACGCCGTCAAC+CGG + chr1.1:78065494-78065513 MS.gene71770:CDS 60.0%
CCACCATCCGTCTCAGTCCA+TGG + chr1.1:78067727-78067746 MS.gene71770:CDS 60.0%
CCTGCAAGACAGCCCCAACA+AGG + chr1.1:78067452-78067471 MS.gene71770:CDS 60.0%
CCTGCACAGCATCCGTCAGA+CGG + chr1.1:78067890-78067909 MS.gene71770:CDS 60.0%
CCTTGTTGGGGCTGTCTTGC+AGG - chr1.1:78067455-78067474 None:intergenic 60.0%
CGGAGTTTGGATGTGGCTGG+AGG - chr1.1:78065626-78065645 None:intergenic 60.0%
CTGGCAGGGGCAGCAGAATT+AGG - chr1.1:78067755-78067774 None:intergenic 60.0%
GAGTCGTTGTTGCGGGAACG+AGG - chr1.1:78065587-78065606 None:intergenic 60.0%
GCAGCAGCAGCAGGATCAGA+AGG + chr1.1:78066390-78066409 MS.gene71770:CDS 60.0%
GGGTAGTTGAGGTGTGGTGG+TGG - chr1.1:78065545-78065564 None:intergenic 60.0%
GGTGGAGCCACGGAGGATAA+CGG - chr1.1:78065524-78065543 None:intergenic 60.0%
GGTTGCTGCGGCTGATGTTG+AGG - chr1.1:78067272-78067291 None:intergenic 60.0%
GTCGTTGTTGCGGGAACGAG+GGG - chr1.1:78065585-78065604 None:intergenic 60.0%
TCCAGTGCCAACTACGCTGG+CGG + chr1.1:78066513-78066532 MS.gene71770:CDS 60.0%
TCCTCCAACCCCCACCACAT+TGG + chr1.1:78067547-78067566 MS.gene71770:CDS 60.0%
TCCTCCAGTGCCAACTACGC+TGG + chr1.1:78066510-78066529 MS.gene71770:CDS 60.0%
TCGGGGTAGTTGAGGTGTGG+TGG - chr1.1:78065548-78065567 None:intergenic 60.0%
TGCTGCTGCGGCTGATGTTG+AGG - chr1.1:78067299-78067318 None:intergenic 60.0%
! ACCAATGTGGTGGGGGTTGG+AGG - chr1.1:78067551-78067570 None:intergenic 60.0%
! CACGGAGGATAACGGTGGTC+CGG - chr1.1:78065516-78065535 None:intergenic 60.0%
! CCATGGACTGAGACGGATGG+TGG - chr1.1:78067730-78067749 None:intergenic 60.0%
! GAGCCATGGACTGAGACGGA+TGG - chr1.1:78067733-78067752 None:intergenic 60.0%
! GCGGCGGTTGGTGTTCCAAT+TGG + chr1.1:78066532-78066551 MS.gene71770:CDS 60.0%
! GGTTGACGGCGTTGGAGGTT+GGG - chr1.1:78065495-78065514 None:intergenic 60.0%
! GTTGACGGCGTTGGAGGTTG+GGG - chr1.1:78065494-78065513 None:intergenic 60.0%
! GTTGGCACTGGAGGATGAGG+CGG - chr1.1:78066505-78066524 None:intergenic 60.0%
!! GAAGGCATTGTGGGCGCCAT+AGG - chr1.1:78067824-78067843 None:intergenic 60.0%
!!! CAAGGTTTTGGAGAGGCGCG+TGG - chr1.1:78065768-78065787 None:intergenic 60.0%
AGTGCCAACTACGCTGGCGG+CGG + chr1.1:78066516-78066535 MS.gene71770:CDS 65.0%
CGGACCACCGTTATCCTCCG+TGG + chr1.1:78065514-78065533 MS.gene71770:CDS 65.0%
CGGTTGGACGAGGGACGATG+TGG - chr1.1:78065670-78065689 None:intergenic 65.0%
GCAACAGCAGCAGCAGCAGC+AGG + chr1.1:78066381-78066400 MS.gene71770:CDS 65.0%
GTTGTTGCGGGAACGAGGGG+AGG - chr1.1:78065582-78065601 None:intergenic 65.0%
TGAACGCGCCACCTCACTCG+CGG + chr1.1:78065736-78065755 MS.gene71770:CDS 65.0%
! CCGTCTGACGGATGCTGTGC+AGG - chr1.1:78067893-78067912 None:intergenic 65.0%
! CGGTTGACGGCGTTGGAGGT+TGG - chr1.1:78065496-78065515 None:intergenic 65.0%
! GCCAGCGTAGTTGGCACTGG+AGG - chr1.1:78066514-78066533 None:intergenic 65.0%
! GGAGCCACGGAGGATAACGG+TGG - chr1.1:78065521-78065540 None:intergenic 65.0%
!! GTGTGGTGGTGGTGGAGCCA+CGG - chr1.1:78065534-78065553 None:intergenic 65.0%
CCAACCGCCGCCAGCGTAGT+TGG - chr1.1:78066523-78066542 None:intergenic 70.0%
CCAACTACGCTGGCGGCGGT+TGG + chr1.1:78066520-78066539 MS.gene71770:CDS 70.0%
GCCGCCAGCGTAGTTGGCAC+TGG - chr1.1:78066517-78066536 None:intergenic 70.0%
GGTGGTCCGGTTGACGGCGT+TGG - chr1.1:78065503-78065522 None:intergenic 70.0%
! GGTCCGGTTGACGGCGTTGG+AGG - chr1.1:78065500-78065519 None:intergenic 70.0%
!! TGGTGGTGGTGGAGCCACGG+AGG - chr1.1:78065531-78065550 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 78065479 78067949 78065479 ID=MS.gene71770
chr1.1 mRNA 78065479 78067949 78065479 ID=MS.gene71770.t1;Parent=MS.gene71770
chr1.1 exon 78065479 78066812 78065479 ID=MS.gene71770.t1.exon1;Parent=MS.gene71770.t1
chr1.1 CDS 78065479 78066812 78065479 ID=cds.MS.gene71770.t1;Parent=MS.gene71770.t1
chr1.1 exon 78067040 78067949 78067040 ID=MS.gene71770.t1.exon2;Parent=MS.gene71770.t1
chr1.1 CDS 78067040 78067949 78067040 ID=cds.MS.gene71770.t1;Parent=MS.gene71770.t1
Gene Sequence

>MS.gene71770

ATGGAGGCGCAACCCCAACCTCCAACGCCGTCAACCGGACCACCGTTATCCTCCGTGGCTCCACCACCACCACACCTCAACTACCCCGATTCCGTTGATTCCTCCCCTCGTTCCCGCAACAACGACTCATGGGACGAACCTTTCCCTCCAGCCACATCCAAACTCCGTCTGATGTGCAGTTACGGTGGCCACATCGTCCCTCGTCCAACCGACAAAGCTCTCTGTTATGTCGGCGGTGACACTCGCATCGTTGTTGTTGAACGCGCCACCTCACTCGCGGATTTATCCACGCGCCTCTCCAAAACCTTGCTTAATGGAAGACCTTTCACTTTCAAGTATCAGCTTCCAAACGAAGACCTAGATTCGTTAATCTCCGTTTCAACCGATGAAGATTTAGAAAACATGATCGATGAATACGATCGAACGAATTCTACAAATTCTTCTGTGAAACCCTCGCGAATTCGTCTTTTTCTGTTTCCATCGAAACCTGAATCTGCTCAGTCAATTCCACCGCAAATTCTCGATCCTACTGTTAGATCCGGTGAATGGTTCTTTGATACCATAAACGGTGCCGTTTCGTCGCTTAATCGAGGTTTTTCTGATTCTGCTGCTTCTTCTGTGAATCATCTTTTAGGTCTTGATGATGATGTTGCTGGGAATAATCATATTGAACAAGGTTCCACTGGAGAAGCTCCTGATGGTGTTTCTCAACCTGGATCTTTTGGGAATTGTAAGAATTTGAAGCAGGATGTTCATTCTGTTCCTGATTCGCCTATGATGGAGACTTCTTCGTCCTTTGGTTCGACTTCTTCGTCTCCGTCTTTGGCGAATTTGCCTCCTATTAGGGTGCATGTTGAAGATGGTGGTTCTGGTGGTGTTAGGGTTCAACAGCAGCAACAATTGCAACAGCAGCAGCAGCAGCAGGATCAGAAGGTTTTGGGGATTGATGAACAGTTTGCTCAAATGGTTGTTGGTGGTATTGGACAGAGGCTACAGGATGAGGGTTTTGCTGTCATGTCTTCACCGCCTCATCCTCCAGTGCCAACTACGCTGGCGGCGGTTGGTGTTCCAATTGGTTCTGCTGTGGTTGTTGGTGATTACCAGAATAGGGTATTCTCTGATGATGAGAGATCGGATCATGGTGTGCCTGTGGGATATAGAAAACCACCAACTCCTCAGCCACAGGTTGTTCAAGTTCAACCTCAAGCTCAAAATCAAGCTCAGGCACAATCTCAGGCACAGTCACAAGCACAGACACAGTCACAAGCTCCTCAATTTCAACAAAAGTCAAGTGGCGGTGGCTCGGATTTGCCTTCTCCTGATTCAGTTTCAAGGTTTGCTTTTACTTCCTTCCATTTACCTGTTTTTGTAATTCTTGTTTTATATTTGTGATATGGCTTATTTTTAATGTTTGTTTACATAGGATTGTTCAATTCATTAACGTGTATGTTGTTAATTGCACTGATTTGTATGCTGTTAATTGCTTTGATTATTATAAACCTAGAGTGGTGGTTTAGCAATATCTGAAATAGGCTGTTGGTGGTTGTTTTTGATCATGCAGTGATAGTAGTCTTTCAAATGCGATGTCACGTCAAAAACCTGTTGTTTATCAAGAGCAAATTCAAATTCAACCTGGAACTACAAGGGTGGATACAAAAATCAATTTGTCCGATCCACATGGTAGGATCCAGGTGCAGCAACATGTACAGGATCCTGGTTATTTGCTGCAACAGCAATTTGAACTCCAGCAGCAGCAACAACAATTTGAACTCCATCAGCAGCAACAACAGCCTCAACATCAGCCGCAGCAACCACAACCTCAACATCAGCCGCAGCAGCAACAACAGCTTCAACATCATCAGCAGCAGCAGTTTATTCATGGGGGACACTACATTCATCATAACCCTGCAATTCCTACATACTATCCTGTATATCCATCACAGCAACAGCCCCATCACCAGGTTTACTATGTACCTGCAAGACAGCCCCAACAAGGTTACAATATTTCTGTGCAGCAGGCTAATATGGGTGAATCTGCCACAACAATCCCTTCTAGCAGACCCCAAAATCCTCCAACCCCCACCACATTGGTTCAACAAAATGCAGCTTACAACCCCATTAGAAGTGCTCCCCTACCCAAAACTGAAATGACGGCTGCTGCTTACAGAGCTGCAACTGGAGGCAGTCCTCAATTTGTGCAAGTTCCTACAAGTCAGCATCAACAGCAGTATGTCACTTACTCCCAGATCCACCATCCGTCTCAGTCCATGGCTCCTAATTCTGCTGCCCCTGCCAGTTATGCTTATGAATATGCTGATCCTGCTCAAGTATACTACTCTCAGCCTATGGCGCCCACAATGCCTTCACAGTACCAGACCATGGCAGCTGCTACTATGATGCAACCGGAAGTTCCTGCACAGCATCCGTCAGACGGCATGAAGCAGCAGATAAGAACCTCACAGCCACTATAA
Protein sequence

>MS.gene71770.t1

MEAQPQPPTPSTGPPLSSVAPPPPHLNYPDSVDSSPRSRNNDSWDEPFPPATSKLRLMCSYGGHIVPRPTDKALCYVGGDTRIVVVERATSLADLSTRLSKTLLNGRPFTFKYQLPNEDLDSLISVSTDEDLENMIDEYDRTNSTNSSVKPSRIRLFLFPSKPESAQSIPPQILDPTVRSGEWFFDTINGAVSSLNRGFSDSAASSVNHLLGLDDDVAGNNHIEQGSTGEAPDGVSQPGSFGNCKNLKQDVHSVPDSPMMETSSSFGSTSSSPSLANLPPIRVHVEDGGSGGVRVQQQQQLQQQQQQQDQKVLGIDEQFAQMVVGGIGQRLQDEGFAVMSSPPHPPVPTTLAAVGVPIGSAVVVGDYQNRVFSDDERSDHGVPVGYRKPPTPQPQVVQVQPQAQNQAQAQSQAQSQAQTQSQAPQFQQKSSGGGSDLPSPDSVSSDSSLSNAMSRQKPVVYQEQIQIQPGTTRVDTKINLSDPHGRIQVQQHVQDPGYLLQQQFELQQQQQQFELHQQQQQPQHQPQQPQPQHQPQQQQQLQHHQQQQFIHGGHYIHHNPAIPTYYPVYPSQQQPHHQVYYVPARQPQQGYNISVQQANMGESATTIPSSRPQNPPTPTTLVQQNAAYNPIRSAPLPKTEMTAAAYRAATGGSPQFVQVPTSQHQQQYVTYSQIHHPSQSMAPNSAAPASYAYEYADPAQVYYSQPMAPTMPSQYQTMAAATMMQPEVPAQHPSDGMKQQIRTSQPL