Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71812.t1 | XP_024627490.1 | 93.4 | 271 | 14 | 2 | 1 | 267 | 1 | 271 | 1.10E-123 | 453 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71812.t1 | Q9C9H1 | 41.4 | 273 | 97 | 9 | 14 | 258 | 7 | 244 | 1.2e-35 | 151.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71812.t1 | A0A396JYU9 | 93.0 | 271 | 15 | 2 | 1 | 267 | 41 | 311 | 3.9e-123 | 450.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053776 | MS.gene71812 | 0.806176 | 9.34E-50 | -1.69E-46 |
| MS.gene056664 | MS.gene71812 | -0.801252 | 9.83E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71812.t1 | MTR_1g054450 | 39.000 | 100 | 58 | 1 | 22 | 121 | 36 | 132 | 9.35e-14 | 70.1 |
| MS.gene71812.t1 | MTR_1g107055 | 39.241 | 79 | 42 | 2 | 75 | 147 | 64 | 142 | 5.22e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71812.t1 | AT1G68360 | 45.693 | 267 | 94 | 12 | 14 | 258 | 7 | 244 | 8.92e-49 | 162 |
| MS.gene71812.t1 | AT1G67030 | 37.795 | 254 | 84 | 11 | 17 | 255 | 3 | 197 | 7.53e-29 | 109 |
| MS.gene71812.t1 | AT5G06650 | 35.537 | 121 | 50 | 4 | 6 | 123 | 4 | 99 | 1.62e-13 | 68.2 |
Find 107 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCCAATGCATCATCAAAAT+TGG | 0.179721 | 1.3:-75053608 | None:intergenic |
| CAAACTCTCTGCAACAATAT+TGG | 0.281348 | 1.3:-75053129 | None:intergenic |
| CAAACACACCTTAAGCTCTT+TGG | 0.292603 | 1.3:+75052947 | MS.gene71812:CDS |
| CTTGCATGGTTTCATCTTCA+TGG | 0.304502 | 1.3:-75052979 | None:intergenic |
| CTGGACTCGATTTGCATTGT+TGG | 0.306350 | 1.3:-75055015 | None:intergenic |
| TTCCAGCTTCTCCATCCTCT+TGG | 0.307319 | 1.3:+75053326 | MS.gene71812:CDS |
| CAAAGAGCTTAAGGTGTGTT+TGG | 0.311474 | 1.3:-75052946 | None:intergenic |
| GAACGGAGGTGGAGCGGAAC+GGG | 0.320728 | 1.3:-75053362 | None:intergenic |
| TTTCCATGTGTTGGCGTTGT+AGG | 0.332361 | 1.3:+75053493 | MS.gene71812:CDS |
| CTCGATTTGCATTGTTGGTT+GGG | 0.344502 | 1.3:-75055010 | None:intergenic |
| GCGGTGGTGTGGTGGTTGTC+TGG | 0.355416 | 1.3:-75055034 | None:intergenic |
| TCCAGCTTCTCCATCCTCTT+GGG | 0.365799 | 1.3:+75053327 | MS.gene71812:CDS |
| TTAAGGTGTGTTTGGGAAGT+TGG | 0.383053 | 1.3:-75052938 | None:intergenic |
| GGAGCAAAGGCGGAGATGAT+AGG | 0.396063 | 1.3:-75053265 | None:intergenic |
| AGGTGAGTGGTCACGGCGGC+TGG | 0.400757 | 1.3:-75055060 | None:intergenic |
| AACATGGCCCATGGTGGGCC+CGG | 0.409999 | 1.3:-75053555 | None:intergenic |
| AAAGAGCTTAAGGTGTGTTT+GGG | 0.411773 | 1.3:-75052945 | None:intergenic |
| GAGTGGTCACGGCGGCTGGC+CGG | 0.412119 | 1.3:-75055056 | None:intergenic |
| GAAACTTTCCCACCTTCCTC+CGG | 0.416224 | 1.3:+75053088 | MS.gene71812:CDS |
| TTCCATGTGTTGGCGTTGTA+GGG | 0.420815 | 1.3:+75053494 | MS.gene71812:CDS |
| GGTGGAAGAAGAAGTTGTTT+TGG | 0.429259 | 1.3:-75053023 | None:intergenic |
| AGCTGAAGCCAAAGAGCTTA+AGG | 0.432010 | 1.3:-75052955 | None:intergenic |
| GTTCAGGCCCGGGCCCACCA+TGG | 0.432395 | 1.3:+75053547 | MS.gene71812:CDS |
| TCACGGCGGCTGGCCGGCGG+TGG | 0.433069 | 1.3:-75055050 | None:intergenic |
| ACCCAAGAGGATGGAGAAGC+TGG | 0.434339 | 1.3:-75053328 | None:intergenic |
| GACAACCACCACACCACCGC+CGG | 0.438057 | 1.3:+75055037 | MS.gene71812:CDS |
| CAACGATGCAGGTTCAGGCC+CGG | 0.442634 | 1.3:+75053536 | MS.gene71812:CDS |
| GAGGAGTCCGGTGATCTTGA+TGG | 0.447464 | 1.3:-75053055 | None:intergenic |
| CCCAATGCATCATCAAAATT+GGG | 0.454376 | 1.3:-75053607 | None:intergenic |
| AGGTTCTCAAAAGGTGATAG+TGG | 0.454672 | 1.3:+75053583 | MS.gene71812:CDS |
| AAACTTTCCCACCTTCCTCC+GGG | 0.463409 | 1.3:+75053089 | MS.gene71812:CDS |
| AACGATGCAGGTTCAGGCCC+GGG | 0.471103 | 1.3:+75053537 | MS.gene71812:CDS |
| TTCAGGCCCGGGCCCACCAT+GGG | 0.478470 | 1.3:+75053548 | MS.gene71812:CDS |
| CCGCGTGATCGATTTGCAGC+TGG | 0.478980 | 1.3:-75053655 | None:intergenic |
| ACTCGATTTGCATTGTTGGT+TGG | 0.481888 | 1.3:-75055011 | None:intergenic |
| AACGGAGGTGGAGCGGAACG+GGG | 0.490444 | 1.3:-75053361 | None:intergenic |
| GCAGGGATGTTTCCATGTGT+TGG | 0.492883 | 1.3:+75053484 | MS.gene71812:CDS |
| ACATGGCCCATGGTGGGCCC+GGG | 0.493537 | 1.3:-75053554 | None:intergenic |
| TGGGAAAGTTTCATTGATAC+CGG | 0.494673 | 1.3:-75053077 | None:intergenic |
| TGGTGTTTCCGTTCCCCGAC+GGG | 0.496296 | 1.3:-75053414 | None:intergenic |
| GCGGCTGGCCGGCGGTGGTG+TGG | 0.498929 | 1.3:-75055045 | None:intergenic |
| ATTGTCAACGATGCAGGTTC+AGG | 0.506548 | 1.3:+75053531 | MS.gene71812:CDS |
| ATTATTACCACTACTCATCA+TGG | 0.508504 | 1.3:-75053434 | None:intergenic |
| GCTGGCCGGCGGTGGTGTGG+TGG | 0.510412 | 1.3:-75055042 | None:intergenic |
| TTGCAGCTGGTGCAAGACTA+AGG | 0.511842 | 1.3:-75053642 | None:intergenic |
| TTTGCAAATTCACAAGCCCT+TGG | 0.516251 | 1.3:+75053148 | MS.gene71812:CDS |
| TGCAAATCGATCACGCGGCT+CGG | 0.525860 | 1.3:+75053660 | MS.gene71812:CDS |
| ATCATGGTGGTTGGTATCCA+TGG | 0.527025 | 1.3:-75052891 | None:intergenic |
| GGAACGGAGGTGGAGCGGAA+CGG | 0.528625 | 1.3:-75053363 | None:intergenic |
| GAGCAAAGGCGGAGATGATA+GGG | 0.532052 | 1.3:-75053264 | None:intergenic |
| TTCTTTCCCCGGAGGAAGGT+GGG | 0.532446 | 1.3:-75053096 | None:intergenic |
| TCAAGATCACCGGACTCCTC+CGG | 0.535820 | 1.3:+75053058 | MS.gene71812:CDS |
| ATGGTGAAACCTGTGGGTGC+AGG | 0.536780 | 1.3:+75053466 | MS.gene71812:CDS |
| TGTTTGAGTAGGTTCTCAAA+AGG | 0.539077 | 1.3:+75053574 | MS.gene71812:CDS |
| TCCCCTACAACGCCAACACA+TGG | 0.539605 | 1.3:-75053496 | None:intergenic |
| TGGTCACGGCGGCTGGCCGG+CGG | 0.540510 | 1.3:-75055053 | None:intergenic |
| ACTGAGACGTGGAACGGAGG+TGG | 0.546611 | 1.3:-75053373 | None:intergenic |
| GCAAATTCACAAGCCCTTGG+TGG | 0.546856 | 1.3:+75053151 | MS.gene71812:CDS |
| GATGATAGGGTTTCGAACGA+AGG | 0.546963 | 1.3:-75053251 | None:intergenic |
| GTCCACATTGTCAACGATGC+AGG | 0.547644 | 1.3:+75053525 | MS.gene71812:CDS |
| CAACACTTGCTAGCTCCGCC+AGG | 0.549780 | 1.3:+75053292 | MS.gene71812:CDS |
| TGGAGAAGCTGGAACCATCA+TGG | 0.549915 | 1.3:-75053317 | None:intergenic |
| ATGGTGTTTCCGTTCCCCGA+CGG | 0.552673 | 1.3:-75053415 | None:intergenic |
| TTTCTTTCCCCGGAGGAAGG+TGG | 0.552800 | 1.3:-75053097 | None:intergenic |
| TCATTGATACCGGAGGAGTC+CGG | 0.553341 | 1.3:-75053067 | None:intergenic |
| AACTTCACCATCAAGATCAC+CGG | 0.555887 | 1.3:+75053048 | MS.gene71812:CDS |
| TGAGTCTTGAATATCTTGCA+TGG | 0.566556 | 1.3:-75052993 | None:intergenic |
| TCACGCGGCTCGGCTCAGCT+TGG | 0.573416 | 1.3:+75053670 | MS.gene71812:CDS |
| CAAGTGTTGTGGAGGAGCAA+AGG | 0.574993 | 1.3:-75053278 | None:intergenic |
| AGCTCCGCCAGGTTCCATGA+TGG | 0.576000 | 1.3:+75053303 | MS.gene71812:CDS |
| GCTGGAACCATCATGGAACC+TGG | 0.577317 | 1.3:-75053310 | None:intergenic |
| ACCATGGGCCATGTTTGAGT+AGG | 0.580256 | 1.3:+75053563 | MS.gene71812:CDS |
| GACGTGGAACGGAGGTGGAG+CGG | 0.596260 | 1.3:-75053368 | None:intergenic |
| GGCGGAGCTAGCAAGTGTTG+TGG | 0.596639 | 1.3:-75053289 | None:intergenic |
| ATTGTAGTGATCATGGTGGT+TGG | 0.604177 | 1.3:-75052900 | None:intergenic |
| TGGTGAAACCTGTGGGTGCA+GGG | 0.607912 | 1.3:+75053467 | MS.gene71812:CDS |
| TACTCAAACATGGCCCATGG+TGG | 0.612291 | 1.3:-75053561 | None:intergenic |
| GGTTCTCAAAAGGTGATAGT+GGG | 0.613425 | 1.3:+75053584 | MS.gene71812:CDS |
| GGAGGTGGAGCGGAACGGGG+CGG | 0.613641 | 1.3:-75053358 | None:intergenic |
| TCTTGATGGTGAAGTTGAGG+TGG | 0.613832 | 1.3:-75053041 | None:intergenic |
| GGAAACATCCCTGCACCCAC+AGG | 0.615006 | 1.3:-75053475 | None:intergenic |
| ACTCAAACATGGCCCATGGT+GGG | 0.619213 | 1.3:-75053560 | None:intergenic |
| GGAACGTAAACCCAAGAGGA+TGG | 0.619759 | 1.3:-75053337 | None:intergenic |
| CCAGCTGCAAATCGATCACG+CGG | 0.620703 | 1.3:+75053655 | MS.gene71812:CDS |
| AACTTTCCCACCTTCCTCCG+GGG | 0.623314 | 1.3:+75053090 | MS.gene71812:CDS |
| TCCATGTGTTGGCGTTGTAG+GGG | 0.626322 | 1.3:+75053495 | MS.gene71812:CDS |
| ACCTACTCAAACATGGCCCA+TGG | 0.626992 | 1.3:-75053564 | None:intergenic |
| TGGTAATAATAATAGTAACA+TGG | 0.627271 | 1.3:+75053447 | MS.gene71812:CDS |
| GGAGCTAGCAAGTGTTGTGG+AGG | 0.629961 | 1.3:-75053286 | None:intergenic |
| TGATCTTGATGGTGAAGTTG+AGG | 0.632741 | 1.3:-75053044 | None:intergenic |
| TTTGAGAACCTACTCAAACA+TGG | 0.644123 | 1.3:-75053571 | None:intergenic |
| TGTGAAACTGAGACGTGGAA+CGG | 0.644837 | 1.3:-75053379 | None:intergenic |
| GTGTTGTGGAGGAGCAAAGG+CGG | 0.649831 | 1.3:-75053275 | None:intergenic |
| AACCTGCATCGTTGACAATG+TGG | 0.656511 | 1.3:-75053527 | None:intergenic |
| TAGTATTGTAGTGATCATGG+TGG | 0.657344 | 1.3:-75052904 | None:intergenic |
| GGAAACACCATGATGAGTAG+TGG | 0.662012 | 1.3:+75053427 | MS.gene71812:CDS |
| TTCCACGTCTCAGTTTCACA+CGG | 0.664044 | 1.3:+75053382 | MS.gene71812:CDS |
| TAGTAACATGGTGAAACCTG+TGG | 0.665975 | 1.3:+75053459 | MS.gene71812:CDS |
| AGGGTTTCGAACGAAGGACA+CGG | 0.671715 | 1.3:-75053245 | None:intergenic |
| GAAAGTTTCATTGATACCGG+AGG | 0.690817 | 1.3:-75053074 | None:intergenic |
| GGAACCATCATGGAACCTGG+CGG | 0.707259 | 1.3:-75053307 | None:intergenic |
| GGGCGGAACGTAAACCCAAG+AGG | 0.707653 | 1.3:-75053341 | None:intergenic |
| AACCGTGTGAAACTGAGACG+TGG | 0.720557 | 1.3:-75053384 | None:intergenic |
| AGTAACATGGTGAAACCTGT+GGG | 0.725437 | 1.3:+75053460 | MS.gene71812:CDS |
| GAAACTGAGACGTGGAACGG+AGG | 0.750713 | 1.3:-75053376 | None:intergenic |
| TGACAGGTGAGTGGTCACGG+CGG | 0.769588 | 1.3:-75055064 | None:intergenic |
| GTTTCGAACGAAGGACACGG+CGG | 0.788365 | 1.3:-75053242 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATTGTAATATTAATGAA+GGG | - | chr1.3:75054916-75054935 | None:intergenic | 10.0% |
| !! | TATATAATAAAATGGTATTT+GGG | + | chr1.3:75054095-75054114 | MS.gene71812:intron | 10.0% |
| !! | TTATATAATAAAATGGTATT+TGG | + | chr1.3:75054094-75054113 | MS.gene71812:intron | 10.0% |
| !! | AATAAAAATGAATAGACATA+CGG | + | chr1.3:75054349-75054368 | MS.gene71812:intron | 15.0% |
| !! | GTAAATTGTAATATTAATGA+AGG | - | chr1.3:75054917-75054936 | None:intergenic | 15.0% |
| !! | GTTGAATTTATAAATGTAAA+TGG | - | chr1.3:75053840-75053859 | None:intergenic | 15.0% |
| !! | TTATTAATTTAGTAACTGTA+TGG | + | chr1.3:75054314-75054333 | MS.gene71812:intron | 15.0% |
| !! | TTTCATTGTATTGTTTATAA+TGG | + | chr1.3:75054029-75054048 | MS.gene71812:intron | 15.0% |
| !!! | ATTTTGCTTATATTTTGAAA+CGG | + | chr1.3:75054571-75054590 | MS.gene71812:intron | 15.0% |
| !!! | ATTTTGCTTATATTTTGAAA+CGG | - | chr1.3:75054590-75054571 | None:intergenic | 15.0% |
| !! | AATATTAATGAAGGGTAAAA+TGG | - | chr1.3:75054908-75054927 | None:intergenic | 20.0% |
| !! | CATTCATTTAATGATATATG+TGG | + | chr1.3:75054498-75054517 | MS.gene71812:intron | 20.0% |
| !! | GACTTCATTTCTTAAAATTT+AGG | - | chr1.3:75054632-75054651 | None:intergenic | 20.0% |
| !! | TGGTAATAATAATAGTAACA+TGG | + | chr1.3:75053447-75053466 | MS.gene71812:CDS | 20.0% |
| !!! | AGGGAGTATAATTTAATTAA+TGG | - | chr1.3:75054441-75054460 | None:intergenic | 20.0% |
| !!! | ATAAGCAAAATTCACTTTTT+AGG | + | chr1.3:75054473-75054492 | MS.gene71812:intron | 20.0% |
| !!! | ATAAGCAAAATTCACTTTTT+AGG | - | chr1.3:75054492-75054473 | None:intergenic | 20.0% |
| !!! | GAAAGATGCTTTTAAAAAAT+GGG | + | chr1.3:75054051-75054070 | MS.gene71812:intron | 20.0% |
| !!! | GCATTGACAATTTTTTTTAA+TGG | - | chr1.3:75054161-75054180 | None:intergenic | 20.0% |
| !!! | TTAGTCTTTTTTTTTGTTGA+CGG | - | chr1.3:75053936-75053955 | None:intergenic | 20.0% |
| ! | CATTCATTTAATGATGTATG+TGG | - | chr1.3:75054537-75054556 | None:intergenic | 25.0% |
| ! | GATATATGTGGTTCATAATA+TGG | + | chr1.3:75054510-75054529 | MS.gene71812:intron | 25.0% |
| ! | GGTAATTTCCAACATATAAT+GGG | - | chr1.3:75054887-75054906 | None:intergenic | 25.0% |
| ! | GTAATTTCCAACATATAATG+GGG | - | chr1.3:75054886-75054905 | None:intergenic | 25.0% |
| ! | TATCTGATATACCAAACTAT+AGG | + | chr1.3:75053970-75053989 | MS.gene71812:intron | 25.0% |
| ! | TGGTAATTTCCAACATATAA+TGG | - | chr1.3:75054888-75054907 | None:intergenic | 25.0% |
| ! | TTAATAATTGAGTCGTTAAC+AGG | - | chr1.3:75054301-75054320 | None:intergenic | 25.0% |
| ! | TTGATGCTTATTATTATGTC+TGG | + | chr1.3:75054224-75054243 | MS.gene71812:intron | 25.0% |
| ! | TTTACCTATTCAATCTCATT+TGG | + | chr1.3:75054932-75054951 | MS.gene71812:intron | 25.0% |
| !! | GCATTTCAATTTTCAACATA+TGG | + | chr1.3:75054728-75054747 | MS.gene71812:intron | 25.0% |
| !! | TTTTAGTATTGTAGTGATCA+TGG | - | chr1.3:75052910-75052929 | None:intergenic | 25.0% |
| !!! | AATTGTCAATGCTTTTTAGT+TGG | + | chr1.3:75054169-75054188 | MS.gene71812:intron | 25.0% |
| !!! | ATCACTGGTTTTGATATATT+GGG | - | chr1.3:75054381-75054400 | None:intergenic | 25.0% |
| !!! | GGAAAGATGCTTTTAAAAAA+TGG | + | chr1.3:75054050-75054069 | MS.gene71812:intron | 25.0% |
| !!! | TCATTACAACATTTTGATTG+AGG | + | chr1.3:75054248-75054267 | MS.gene71812:intron | 25.0% |
| AAGACCAAATGAGATTGAAT+AGG | - | chr1.3:75054939-75054958 | None:intergenic | 30.0% | |
| ACATTTATGCAGATCTAACT+TGG | + | chr1.3:75054813-75054832 | MS.gene71812:intron | 30.0% | |
| ATTATTACCACTACTCATCA+TGG | - | chr1.3:75053437-75053456 | None:intergenic | 30.0% | |
| CATATATATTAGCCCTTAAG+GGG | - | chr1.3:75053710-75053729 | None:intergenic | 30.0% | |
| CCATATATATTAGCCCTTAA+GGG | - | chr1.3:75053711-75053730 | None:intergenic | 30.0% | |
| TGATTAAATCTGACATGCAT+TGG | + | chr1.3:75054273-75054292 | MS.gene71812:intron | 30.0% | |
| !!! | CATCACTGGTTTTGATATAT+TGG | - | chr1.3:75054382-75054401 | None:intergenic | 30.0% |
| !!! | TGCTTATATTTTGAAACGGA+GGG | - | chr1.3:75054594-75054575 | None:intergenic | 30.0% |
| !!! | TTGCTTATATTTTGAAACGG+AGG | - | chr1.3:75054593-75054574 | None:intergenic | 30.0% |
| AAAACCAGTGATGTTTATGC+AGG | + | chr1.3:75054389-75054408 | MS.gene71812:intron | 35.0% | |
| AAAGAGCTTAAGGTGTGTTT+GGG | - | chr1.3:75052948-75052967 | None:intergenic | 35.0% | |
| AAGCAAGCTATACAAGATGT+GGG | - | chr1.3:75054206-75054225 | None:intergenic | 35.0% | |
| CAAACTCTCTGCAACAATAT+TGG | - | chr1.3:75053132-75053151 | None:intergenic | 35.0% | |
| CCCAATGCATCATCAAAATT+GGG | - | chr1.3:75053610-75053629 | None:intergenic | 35.0% | |
| CCCTTAAGGGCTAATATATA+TGG | + | chr1.3:75053708-75053727 | MS.gene71812:intron | 35.0% | |
| GCCATATATATTAGCCCTTA+AGG | - | chr1.3:75053712-75053731 | None:intergenic | 35.0% | |
| TAGTATTGTAGTGATCATGG+TGG | - | chr1.3:75052907-75052926 | None:intergenic | 35.0% | |
| TATACCAAACTATAGGCGAT+TGG | + | chr1.3:75053977-75053996 | MS.gene71812:intron | 35.0% | |
| TGAGTCTTGAATATCTTGCA+TGG | - | chr1.3:75052996-75053015 | None:intergenic | 35.0% | |
| TGGGAAAGTTTCATTGATAC+CGG | - | chr1.3:75053080-75053099 | None:intergenic | 35.0% | |
| TGTTTGAGTAGGTTCTCAAA+AGG | + | chr1.3:75053574-75053593 | MS.gene71812:CDS | 35.0% | |
| TTTGAGAACCTACTCAAACA+TGG | - | chr1.3:75053574-75053593 | None:intergenic | 35.0% | |
| ! | ATTTCCAACATATAATGGGG+TGG | - | chr1.3:75054883-75054902 | None:intergenic | 35.0% |
| !! | GAAAGTACTGTACTTTGTTG+AGG | + | chr1.3:75054697-75054716 | MS.gene71812:intron | 35.0% |
| !!! | ATTTTAGTTCACGTGATCAC+AGG | + | chr1.3:75054663-75054682 | MS.gene71812:intron | 35.0% |
| !!! | CCCAATTTTGATGATGCATT+GGG | + | chr1.3:75053607-75053626 | MS.gene71812:CDS | 35.0% |
| !!! | GTTCTTTTTTGTGAGCGTTT+TGG | - | chr1.3:75053180-75053199 | None:intergenic | 35.0% |
| AACTTCACCATCAAGATCAC+CGG | + | chr1.3:75053048-75053067 | MS.gene71812:CDS | 40.0% | |
| AGGTTCTCAAAAGGTGATAG+TGG | + | chr1.3:75053583-75053602 | MS.gene71812:CDS | 40.0% | |
| AGTAACATGGTGAAACCTGT+GGG | + | chr1.3:75053460-75053479 | MS.gene71812:CDS | 40.0% | |
| ATCTAACTTGGCCAAATCAG+TGG | + | chr1.3:75054825-75054844 | MS.gene71812:intron | 40.0% | |
| ATTCTAGATGCTCCCCTTAA+GGG | + | chr1.3:75053695-75053714 | MS.gene71812:intron | 40.0% | |
| ATTGTAGTGATCATGGTGGT+TGG | - | chr1.3:75052903-75052922 | None:intergenic | 40.0% | |
| CAAACACACCTTAAGCTCTT+TGG | + | chr1.3:75052947-75052966 | MS.gene71812:CDS | 40.0% | |
| CAAAGAGCTTAAGGTGTGTT+TGG | - | chr1.3:75052949-75052968 | None:intergenic | 40.0% | |
| CAAGCAAGCTATACAAGATG+TGG | - | chr1.3:75054207-75054226 | None:intergenic | 40.0% | |
| CTTGCATGGTTTCATCTTCA+TGG | - | chr1.3:75052982-75053001 | None:intergenic | 40.0% | |
| GAAAGTTTCATTGATACCGG+AGG | - | chr1.3:75053077-75053096 | None:intergenic | 40.0% | |
| GCCCAATGCATCATCAAAAT+TGG | - | chr1.3:75053611-75053630 | None:intergenic | 40.0% | |
| GGTTCTCAAAAGGTGATAGT+GGG | + | chr1.3:75053584-75053603 | MS.gene71812:CDS | 40.0% | |
| TAGTAACATGGTGAAACCTG+TGG | + | chr1.3:75053459-75053478 | MS.gene71812:CDS | 40.0% | |
| TATTCTAGATGCTCCCCTTA+AGG | + | chr1.3:75053694-75053713 | MS.gene71812:intron | 40.0% | |
| TGATGTTTATGCAGGTAGCT+AGG | + | chr1.3:75054397-75054416 | MS.gene71812:intron | 40.0% | |
| TTAAGGTGTGTTTGGGAAGT+TGG | - | chr1.3:75052941-75052960 | None:intergenic | 40.0% | |
| TTTGCAAATTCACAAGCCCT+TGG | + | chr1.3:75053148-75053167 | MS.gene71812:CDS | 40.0% | |
| ! | ACTCGATTTGCATTGTTGGT+TGG | - | chr1.3:75055014-75055033 | None:intergenic | 40.0% |
| ! | CTCGATTTGCATTGTTGGTT+GGG | - | chr1.3:75055013-75055032 | None:intergenic | 40.0% |
| ! | GGTGGAAGAAGAAGTTGTTT+TGG | - | chr1.3:75053026-75053045 | None:intergenic | 40.0% |
| !! | TGATCTTGATGGTGAAGTTG+AGG | - | chr1.3:75053047-75053066 | None:intergenic | 40.0% |
| !!! | GCCCAATTTTGATGATGCAT+TGG | + | chr1.3:75053606-75053625 | MS.gene71812:CDS | 40.0% |
| AACCTGCATCGTTGACAATG+TGG | - | chr1.3:75053530-75053549 | None:intergenic | 45.0% | |
| AGCTGAAGCCAAAGAGCTTA+AGG | - | chr1.3:75052958-75052977 | None:intergenic | 45.0% | |
| ATTGTCAACGATGCAGGTTC+AGG | + | chr1.3:75053531-75053550 | MS.gene71812:CDS | 45.0% | |
| CCCTTCAGATGAGAGAGAAA+CGG | - | chr1.3:75054963-75054982 | None:intergenic | 45.0% | |
| CCGTTTCTCTCTCATCTGAA+GGG | + | chr1.3:75054960-75054979 | MS.gene71812:intron | 45.0% | |
| GATGATAGGGTTTCGAACGA+AGG | - | chr1.3:75053254-75053273 | None:intergenic | 45.0% | |
| GCTACCTGCATAAACATCAC+TGG | - | chr1.3:75054396-75054415 | None:intergenic | 45.0% | |
| GGAAACACCATGATGAGTAG+TGG | + | chr1.3:75053427-75053446 | MS.gene71812:CDS | 45.0% | |
| TAACTTGGCCAAATCAGTGG+CGG | + | chr1.3:75054828-75054847 | MS.gene71812:intron | 45.0% | |
| TGCACCAATCGCCTATAGTT+TGG | - | chr1.3:75053984-75054003 | None:intergenic | 45.0% | |
| TGTGAAACTGAGACGTGGAA+CGG | - | chr1.3:75053382-75053401 | None:intergenic | 45.0% | |
| TTCCACGTCTCAGTTTCACA+CGG | + | chr1.3:75053382-75053401 | MS.gene71812:CDS | 45.0% | |
| ! | CTGGACTCGATTTGCATTGT+TGG | - | chr1.3:75055018-75055037 | None:intergenic | 45.0% |
| ! | GCACTCGTATTTTCTTTCCC+CGG | - | chr1.3:75053110-75053129 | None:intergenic | 45.0% |
| ! | TATTTTCTTTCCCCGGAGGA+AGG | - | chr1.3:75053103-75053122 | None:intergenic | 45.0% |
| ! | TCCAACATATAATGGGGTGG+CGG | - | chr1.3:75054880-75054899 | None:intergenic | 45.0% |
| ! | TTCCATGTGTTGGCGTTGTA+GGG | + | chr1.3:75053494-75053513 | MS.gene71812:CDS | 45.0% |
| ! | TTTCCATGTGTTGGCGTTGT+AGG | + | chr1.3:75053493-75053512 | MS.gene71812:CDS | 45.0% |
| !! | TCTTGATGGTGAAGTTGAGG+TGG | - | chr1.3:75053044-75053063 | None:intergenic | 45.0% |
| !! | GAAATTATTATATAATAAAA+TGG | + | chr1.3:75054087-75054106 | MS.gene71812:intron | 5.0% |
| !!! | TACATTTTTTTTTTTTTTTT+AGG | + | chr1.3:75053738-75053757 | MS.gene71812:intron | 5.0% |
| AAACTTTCCCACCTTCCTCC+GGG | + | chr1.3:75053089-75053108 | MS.gene71812:CDS | 50.0% | |
| AACCGTGTGAAACTGAGACG+TGG | - | chr1.3:75053387-75053406 | None:intergenic | 50.0% | |
| ACCATGGGCCATGTTTGAGT+AGG | + | chr1.3:75053563-75053582 | MS.gene71812:CDS | 50.0% | |
| ACCGCCACCCCATTATATGT+TGG | + | chr1.3:75054876-75054895 | MS.gene71812:intron | 50.0% | |
| ACCTACTCAAACATGGCCCA+TGG | - | chr1.3:75053567-75053586 | None:intergenic | 50.0% | |
| ACTCAAACATGGCCCATGGT+GGG | - | chr1.3:75053563-75053582 | None:intergenic | 50.0% | |
| AGGGTTTCGAACGAAGGACA+CGG | - | chr1.3:75053248-75053267 | None:intergenic | 50.0% | |
| GAAACTTTCCCACCTTCCTC+CGG | + | chr1.3:75053088-75053107 | MS.gene71812:CDS | 50.0% | |
| GAGCAAAGGCGGAGATGATA+GGG | - | chr1.3:75053267-75053286 | None:intergenic | 50.0% | |
| GCAAATTCACAAGCCCTTGG+TGG | + | chr1.3:75053151-75053170 | MS.gene71812:CDS | 50.0% | |
| GCAGGGATGTTTCCATGTGT+TGG | + | chr1.3:75053484-75053503 | MS.gene71812:CDS | 50.0% | |
| GCCGTTTCTCTCTCATCTGA+AGG | + | chr1.3:75054959-75054978 | MS.gene71812:intron | 50.0% | |
| GGAACGTAAACCCAAGAGGA+TGG | - | chr1.3:75053340-75053359 | None:intergenic | 50.0% | |
| GTCCACATTGTCAACGATGC+AGG | + | chr1.3:75053525-75053544 | MS.gene71812:CDS | 50.0% | |
| TACTCAAACATGGCCCATGG+TGG | - | chr1.3:75053564-75053583 | None:intergenic | 50.0% | |
| TCATTGATACCGGAGGAGTC+CGG | - | chr1.3:75053070-75053089 | None:intergenic | 50.0% | |
| TCCAGCTTCTCCATCCTCTT+GGG | + | chr1.3:75053327-75053346 | MS.gene71812:CDS | 50.0% | |
| TGGAGAAGCTGGAACCATCA+TGG | - | chr1.3:75053320-75053339 | None:intergenic | 50.0% | |
| TTCCAGCTTCTCCATCCTCT+TGG | + | chr1.3:75053326-75053345 | MS.gene71812:CDS | 50.0% | |
| TTGCAGCTGGTGCAAGACTA+AGG | - | chr1.3:75053645-75053664 | None:intergenic | 50.0% | |
| ! | AACATATAATGGGGTGGCGG+TGG | - | chr1.3:75054877-75054896 | None:intergenic | 50.0% |
| ! | CAAGTGTTGTGGAGGAGCAA+AGG | - | chr1.3:75053281-75053300 | None:intergenic | 50.0% |
| ! | CTCGTATTTTCTTTCCCCGG+AGG | - | chr1.3:75053107-75053126 | None:intergenic | 50.0% |
| ! | TCCATGTGTTGGCGTTGTAG+GGG | + | chr1.3:75053495-75053514 | MS.gene71812:CDS | 50.0% |
| !!! | AGCGTTTTGGTGTCCACCAA+GGG | - | chr1.3:75053167-75053186 | None:intergenic | 50.0% |
| AACTTTCCCACCTTCCTCCG+GGG | + | chr1.3:75053090-75053109 | MS.gene71812:CDS | 55.0% | |
| ACCCAAGAGGATGGAGAAGC+TGG | - | chr1.3:75053331-75053350 | None:intergenic | 55.0% | |
| ATGGTGAAACCTGTGGGTGC+AGG | + | chr1.3:75053466-75053485 | MS.gene71812:CDS | 55.0% | |
| ATGGTGTTTCCGTTCCCCGA+CGG | - | chr1.3:75053418-75053437 | None:intergenic | 55.0% | |
| CCAGCTGCAAATCGATCACG+CGG | + | chr1.3:75053655-75053674 | MS.gene71812:CDS | 55.0% | |
| GAAACTGAGACGTGGAACGG+AGG | - | chr1.3:75053379-75053398 | None:intergenic | 55.0% | |
| GAGGAGTCCGGTGATCTTGA+TGG | - | chr1.3:75053058-75053077 | None:intergenic | 55.0% | |
| GCTGGAACCATCATGGAACC+TGG | - | chr1.3:75053313-75053332 | None:intergenic | 55.0% | |
| GGAACCATCATGGAACCTGG+CGG | - | chr1.3:75053310-75053329 | None:intergenic | 55.0% | |
| GGAGCAAAGGCGGAGATGAT+AGG | - | chr1.3:75053268-75053287 | None:intergenic | 55.0% | |
| GTGTTGTGGAGGAGCAAAGG+CGG | - | chr1.3:75053278-75053297 | None:intergenic | 55.0% | |
| GTTTCGAACGAAGGACACGG+CGG | - | chr1.3:75053245-75053264 | None:intergenic | 55.0% | |
| TCAAGATCACCGGACTCCTC+CGG | + | chr1.3:75053058-75053077 | MS.gene71812:CDS | 55.0% | |
| TCCCCTACAACGCCAACACA+TGG | - | chr1.3:75053499-75053518 | None:intergenic | 55.0% | |
| TGCAAATCGATCACGCGGCT+CGG | + | chr1.3:75053660-75053679 | MS.gene71812:CDS | 55.0% | |
| TGGTGAAACCTGTGGGTGCA+GGG | + | chr1.3:75053467-75053486 | MS.gene71812:CDS | 55.0% | |
| TTCTTTCCCCGGAGGAAGGT+GGG | - | chr1.3:75053099-75053118 | None:intergenic | 55.0% | |
| TTTCTTTCCCCGGAGGAAGG+TGG | - | chr1.3:75053100-75053119 | None:intergenic | 55.0% | |
| ! | AAATCAGTGGCGGAACTGGG+GGG | + | chr1.3:75054838-75054857 | MS.gene71812:intron | 55.0% |
| ! | ACACGGTTGCGTTTTCCCGT+CGG | + | chr1.3:75053399-75053418 | MS.gene71812:CDS | 55.0% |
| ! | CAAATCAGTGGCGGAACTGG+GGG | + | chr1.3:75054837-75054856 | MS.gene71812:intron | 55.0% |
| ! | CCAAATCAGTGGCGGAACTG+GGG | + | chr1.3:75054836-75054855 | MS.gene71812:intron | 55.0% |
| ! | GCCAAATCAGTGGCGGAACT+GGG | + | chr1.3:75054835-75054854 | MS.gene71812:intron | 55.0% |
| ! | GGAGCTAGCAAGTGTTGTGG+AGG | - | chr1.3:75053289-75053308 | None:intergenic | 55.0% |
| !!! | GAGCGTTTTGGTGTCCACCA+AGG | - | chr1.3:75053168-75053187 | None:intergenic | 55.0% |
| AACGATGCAGGTTCAGGCCC+GGG | + | chr1.3:75053537-75053556 | MS.gene71812:CDS | 60.0% | |
| ACTGAGACGTGGAACGGAGG+TGG | - | chr1.3:75053376-75053395 | None:intergenic | 60.0% | |
| AGCTCCGCCAGGTTCCATGA+TGG | + | chr1.3:75053303-75053322 | MS.gene71812:CDS | 60.0% | |
| CAACGATGCAGGTTCAGGCC+CGG | + | chr1.3:75053536-75053555 | MS.gene71812:CDS | 60.0% | |
| GGAAACATCCCTGCACCCAC+AGG | - | chr1.3:75053478-75053497 | None:intergenic | 60.0% | |
| GGGCGGAACGTAAACCCAAG+AGG | - | chr1.3:75053344-75053363 | None:intergenic | 60.0% | |
| TGGTGTTTCCGTTCCCCGAC+GGG | - | chr1.3:75053417-75053436 | None:intergenic | 60.0% | |
| ! | ACGGTTGCGTTTTCCCGTCG+GGG | + | chr1.3:75053401-75053420 | MS.gene71812:CDS | 60.0% |
| ! | CAACACTTGCTAGCTCCGCC+AGG | + | chr1.3:75053292-75053311 | MS.gene71812:CDS | 60.0% |
| ! | CACGGTTGCGTTTTCCCGTC+GGG | + | chr1.3:75053400-75053419 | MS.gene71812:CDS | 60.0% |
| ! | CCCCAGTTCCGCCACTGATT+TGG | - | chr1.3:75054839-75054858 | None:intergenic | 60.0% |
| ! | GGCCAAATCAGTGGCGGAAC+TGG | + | chr1.3:75054834-75054853 | MS.gene71812:intron | 60.0% |
| ! | GGCGGAGCTAGCAAGTGTTG+TGG | - | chr1.3:75053292-75053311 | None:intergenic | 60.0% |
| ! | TGCGTTTTCCCGTCGGGGAA+CGG | + | chr1.3:75053406-75053425 | MS.gene71812:CDS | 60.0% |
| !! | CCGCGTGATCGATTTGCAGC+TGG | - | chr1.3:75053658-75053677 | None:intergenic | 60.0% |
| AACGGAGGTGGAGCGGAACG+GGG | - | chr1.3:75053364-75053383 | None:intergenic | 65.0% | |
| GAACGGAGGTGGAGCGGAAC+GGG | - | chr1.3:75053365-75053384 | None:intergenic | 65.0% | |
| GACAACCACCACACCACCGC+CGG | + | chr1.3:75055037-75055056 | MS.gene71812:CDS | 65.0% | |
| GACGTGGAACGGAGGTGGAG+CGG | - | chr1.3:75053371-75053390 | None:intergenic | 65.0% | |
| GCGGTGGTGTGGTGGTTGTC+TGG | - | chr1.3:75055037-75055056 | None:intergenic | 65.0% | |
| GGAACGGAGGTGGAGCGGAA+CGG | - | chr1.3:75053366-75053385 | None:intergenic | 65.0% | |
| !! | AACATGGCCCATGGTGGGCC+CGG | - | chr1.3:75053558-75053577 | None:intergenic | 65.0% |
| CGGAACTGGGGGGTGGCAAG+GGG | + | chr1.3:75054848-75054867 | MS.gene71812:intron | 70.0% | |
| GCGGAACTGGGGGGTGGCAA+GGG | + | chr1.3:75054847-75054866 | MS.gene71812:intron | 70.0% | |
| GGAACTGGGGGGTGGCAAGG+GGG | + | chr1.3:75054849-75054868 | MS.gene71812:intron | 70.0% | |
| TTCAGGCCCGGGCCCACCAT+GGG | + | chr1.3:75053548-75053567 | MS.gene71812:CDS | 70.0% | |
| ! | TCACGCGGCTCGGCTCAGCT+TGG | + | chr1.3:75053670-75053689 | MS.gene71812:CDS | 70.0% |
| ! | TCAGTGGCGGAACTGGGGGG+TGG | + | chr1.3:75054841-75054860 | MS.gene71812:intron | 70.0% |
| !! | ACATGGCCCATGGTGGGCCC+GGG | - | chr1.3:75053557-75053576 | None:intergenic | 70.0% |
| GGAGGTGGAGCGGAACGGGG+CGG | - | chr1.3:75053361-75053380 | None:intergenic | 75.0% | |
| GGCGGAACTGGGGGGTGGCA+AGG | + | chr1.3:75054846-75054865 | MS.gene71812:intron | 75.0% | |
| GTTCAGGCCCGGGCCCACCA+TGG | + | chr1.3:75053547-75053566 | MS.gene71812:CDS | 75.0% | |
| ! | GCTGGCCGGCGGTGGTGTGG+TGG | - | chr1.3:75055045-75055064 | None:intergenic | 80.0% |
| !! | GCGGCTGGCCGGCGGTGGTG+TGG | - | chr1.3:75055048-75055067 | None:intergenic | 85.0% |
| !! | TCACGGCGGCTGGCCGGCGG+TGG | - | chr1.3:75055053-75055072 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 75052893 | 75055072 | 75052893 | ID=MS.gene71812 |
| chr1.3 | mRNA | 75052893 | 75055072 | 75052893 | ID=MS.gene71812.t1;Parent=MS.gene71812 |
| chr1.3 | exon | 75052893 | 75053691 | 75052893 | ID=MS.gene71812.t1.exon1;Parent=MS.gene71812.t1 |
| chr1.3 | CDS | 75052893 | 75053691 | 75052893 | ID=cds.MS.gene71812.t1;Parent=MS.gene71812.t1 |
| chr1.3 | exon | 75054981 | 75055072 | 75054981 | ID=MS.gene71812.t1.exon2;Parent=MS.gene71812.t1 |
| chr1.3 | CDS | 75054981 | 75055072 | 75054981 | ID=cds.MS.gene71812.t1;Parent=MS.gene71812.t1 |
| Gene Sequence |
| Protein sequence |
