Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71911.t1 | XP_024638892.1 | 99.1 | 219 | 2 | 0 | 1 | 219 | 1 | 219 | 1.40E-123 | 452.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71911.t1 | O22152 | 60.8 | 227 | 78 | 6 | 1 | 219 | 6 | 229 | 2.9e-66 | 253.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71911.t1 | G7JK46 | 98.6 | 219 | 2 | 1 | 1 | 219 | 1 | 218 | 9.2e-122 | 445.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene71911.t1 | TF | C2C2-YABBY |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050581 | MS.gene71911 | 0.829025 | 6.48E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71911.t1 | MTR_4g101660 | 98.630 | 219 | 2 | 1 | 1 | 219 | 1 | 218 | 2.92e-162 | 446 |
| MS.gene71911.t1 | MTR_4g025900 | 70.792 | 202 | 52 | 5 | 20 | 219 | 25 | 221 | 5.07e-90 | 264 |
| MS.gene71911.t1 | MTR_2g087740 | 49.510 | 204 | 91 | 6 | 8 | 209 | 2 | 195 | 1.93e-56 | 178 |
| MS.gene71911.t1 | MTR_4g114730 | 53.333 | 180 | 64 | 5 | 7 | 182 | 2 | 165 | 4.57e-55 | 174 |
| MS.gene71911.t1 | MTR_4g050300 | 49.010 | 202 | 79 | 7 | 9 | 209 | 1 | 179 | 1.30e-49 | 160 |
| MS.gene71911.t1 | MTR_5g034030 | 49.686 | 159 | 71 | 4 | 18 | 175 | 12 | 162 | 3.62e-45 | 150 |
| MS.gene71911.t1 | MTR_5g046230 | 41.916 | 167 | 78 | 3 | 9 | 174 | 7 | 155 | 2.11e-36 | 127 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71911.t1 | AT2G45190 | 61.009 | 218 | 74 | 6 | 10 | 219 | 15 | 229 | 2.50e-82 | 245 |
| MS.gene71911.t1 | AT4G00180 | 61.504 | 226 | 63 | 10 | 12 | 217 | 17 | 238 | 1.61e-73 | 223 |
| MS.gene71911.t1 | AT4G00180 | 60.190 | 211 | 60 | 10 | 27 | 217 | 1 | 207 | 3.42e-62 | 193 |
| MS.gene71911.t1 | AT2G26580 | 57.143 | 168 | 49 | 6 | 17 | 182 | 8 | 154 | 1.57e-56 | 177 |
| MS.gene71911.t1 | AT2G26580 | 57.143 | 168 | 49 | 6 | 17 | 182 | 8 | 154 | 1.57e-56 | 177 |
| MS.gene71911.t1 | AT1G08465 | 50.515 | 194 | 79 | 4 | 17 | 209 | 7 | 184 | 6.22e-55 | 174 |
| MS.gene71911.t1 | AT2G45190 | 57.143 | 168 | 61 | 6 | 60 | 219 | 1 | 165 | 3.60e-54 | 171 |
| MS.gene71911.t1 | AT1G23420 | 46.286 | 175 | 90 | 3 | 6 | 178 | 8 | 180 | 6.38e-39 | 134 |
| MS.gene71911.t1 | AT1G23420 | 46.286 | 175 | 90 | 3 | 6 | 178 | 39 | 211 | 3.48e-38 | 133 |
| MS.gene71911.t1 | AT1G69180 | 45.000 | 160 | 69 | 3 | 15 | 174 | 16 | 156 | 6.13e-34 | 120 |
Find 55 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATGGTTCATCATAAAATT+TGG | 0.162315 | 8.3:-19643990 | None:intergenic |
| AATCATTTGGTGCATTTATA+TGG | 0.220470 | 8.3:-19644007 | None:intergenic |
| ACCAGAAGGTTATGATGATT+TGG | 0.269243 | 8.3:-19643814 | None:intergenic |
| CCAGAAGGTTATGATGATTT+GGG | 0.306156 | 8.3:-19643813 | None:intergenic |
| ATAAAATTTGGAGCTGGGTT+TGG | 0.340235 | 8.3:-19643978 | None:intergenic |
| GCTTCCCTGTGAGTTATATC+AGG | 0.354904 | 8.3:-19645236 | None:intergenic |
| CCCAAATCATCATAACCTTC+TGG | 0.358123 | 8.3:+19643813 | MS.gene71911:CDS |
| GTCTTCTTCATAGTCTGATC+AGG | 0.388325 | 8.3:-19646110 | None:intergenic |
| AGAGAGATTGATGCATTAGT+AGG | 0.399847 | 8.3:-19646356 | None:intergenic |
| CACTTCCCACACATTCACTT+TGG | 0.432093 | 8.3:+19646080 | MS.gene71911:CDS |
| TGTCCCAAATGAAACTGATT+GGG | 0.435332 | 8.3:-19643778 | None:intergenic |
| TTCAACCACAACATTATCCT+TGG | 0.449974 | 8.3:+19643470 | MS.gene71911:CDS |
| GTGTCCCAAATGAAACTGAT+TGG | 0.468609 | 8.3:-19643779 | None:intergenic |
| AAAGGAGGATCATACATTCT+TGG | 0.469847 | 8.3:-19645273 | None:intergenic |
| AGTAATGCACGCATGTTGAC+TGG | 0.472196 | 8.3:-19643745 | None:intergenic |
| TTCATCATAAAATTTGGAGC+TGG | 0.473136 | 8.3:-19643984 | None:intergenic |
| GGAGGCATAGAGAAATCATT+TGG | 0.480020 | 8.3:-19644020 | None:intergenic |
| TCACGTCTGTTTATGATTGG+TGG | 0.480315 | 8.3:-19644074 | None:intergenic |
| TCATCATAAAATTTGGAGCT+GGG | 0.482099 | 8.3:-19643983 | None:intergenic |
| ATCTCACGTCTGTTTATGAT+TGG | 0.489279 | 8.3:-19644077 | None:intergenic |
| ATTCTTGGCAGCTGCGCTGA+AGG | 0.503305 | 8.3:-19645258 | None:intergenic |
| CAAAGTGAATGTGTGGGAAG+TGG | 0.524635 | 8.3:-19646079 | None:intergenic |
| CTGTTTATGATTGGTGGTCG+TGG | 0.531680 | 8.3:-19644068 | None:intergenic |
| CAGATTCTGATGAAAGATGC+GGG | 0.541160 | 8.3:+19646301 | MS.gene71911:CDS |
| AACAAAGTTGCTCGGAAGGA+GGG | 0.547749 | 8.3:-19643500 | None:intergenic |
| GGAAGGAGGGAGGTGGTCCA+AGG | 0.549892 | 8.3:-19643487 | None:intergenic |
| GAAGACAAATGTGTGCCAGC+AGG | 0.553012 | 8.3:+19646127 | MS.gene71911:CDS |
| TCAATCCTGATATAACTCAC+AGG | 0.554077 | 8.3:+19645231 | MS.gene71911:CDS |
| GATGTTTCATACAGCAAGGA+TGG | 0.571365 | 8.3:-19643547 | None:intergenic |
| TAACAAAGTTGCTCGGAAGG+AGG | 0.575627 | 8.3:-19643501 | None:intergenic |
| ACATAACAAAGTTGCTCGGA+AGG | 0.579272 | 8.3:-19643504 | None:intergenic |
| GGATAATGTTGTGGTTGAAG+AGG | 0.579637 | 8.3:-19643466 | None:intergenic |
| GTCTTGAACAAGCTTGTGCA+AGG | 0.580384 | 8.3:-19643685 | None:intergenic |
| GTTGCTCGGAAGGAGGGAGG+TGG | 0.583306 | 8.3:-19643494 | None:intergenic |
| GATTGACAGACTTAATGCGT+TGG | 0.585391 | 8.3:-19645214 | None:intergenic |
| GAGAGATTGATGCATTAGTA+GGG | 0.586283 | 8.3:-19646355 | None:intergenic |
| AAAGTGAATGTGTGGGAAGT+GGG | 0.594462 | 8.3:-19646078 | None:intergenic |
| CTCATCAGCTACAGTCCTAG+TGG | 0.598065 | 8.3:-19644042 | None:intergenic |
| AGCAAGGATGGTGTCACAGA+TGG | 0.603099 | 8.3:-19643535 | None:intergenic |
| TCATCAGCTACAGTCCTAGT+GGG | 0.606377 | 8.3:-19644041 | None:intergenic |
| CAATCCTGATATAACTCACA+GGG | 0.607037 | 8.3:+19645232 | MS.gene71911:CDS |
| ATTTCTCTATGCCTCCCACT+AGG | 0.608537 | 8.3:+19644027 | MS.gene71911:CDS |
| TCAGATTCTGATGAAAGATG+CGG | 0.615278 | 8.3:+19646300 | MS.gene71911:CDS |
| GTGAACATAACAAAGTTGCT+CGG | 0.617377 | 8.3:-19643508 | None:intergenic |
| CAGAAGGTTATGATGATTTG+GGG | 0.623732 | 8.3:-19643812 | None:intergenic |
| ATGAGACCAAAGTGAATGTG+TGG | 0.636661 | 8.3:-19646086 | None:intergenic |
| GTCCCAAATGAAACTGATTG+GGG | 0.640416 | 8.3:-19643777 | None:intergenic |
| AAAGTTGCTCGGAAGGAGGG+AGG | 0.666622 | 8.3:-19643497 | None:intergenic |
| ATGAAGCGATTGTATGCTGA+GGG | 0.673566 | 8.3:-19645045 | None:intergenic |
| TCAGCTACAGTCCTAGTGGG+AGG | 0.678197 | 8.3:-19644038 | None:intergenic |
| AAGACTGTTACTGTGAGATG+CGG | 0.688688 | 8.3:+19643703 | MS.gene71911:CDS |
| TGAGACCAAAGTGAATGTGT+GGG | 0.708380 | 8.3:-19646085 | None:intergenic |
| GTGGTCCAAGGATAATGTTG+TGG | 0.713676 | 8.3:-19643475 | None:intergenic |
| GATGAAGCGATTGTATGCTG+AGG | 0.735800 | 8.3:-19645046 | None:intergenic |
| TCCCAAATGAAACTGATTGG+GGG | 0.774348 | 8.3:-19643776 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATAAATAAATAAAAATA+TGG | + | chr8.3:19645752-19645771 | MS.gene71911:intron | 0.0% |
| !! | AATAAAATATTTACTTTATG+TGG | + | chr8.3:19644331-19644350 | MS.gene71911:intron | 10.0% |
| !! | AGTTCAAATTAATAAATTAT+GGG | + | chr8.3:19644228-19644247 | MS.gene71911:intron | 10.0% |
| !! | ATATATTATATATGTAAGAT+GGG | + | chr8.3:19644739-19644758 | MS.gene71911:intron | 10.0% |
| !! | ATGTAAATATCTATAAAAAA+AGG | + | chr8.3:19645903-19645922 | MS.gene71911:intron | 10.0% |
| !! | ATTCATTTATTTATAAGTTA+AGG | - | chr8.3:19645302-19645321 | None:intergenic | 10.0% |
| !! | TATATATTATATATGTAAGA+TGG | + | chr8.3:19644738-19644757 | MS.gene71911:intron | 10.0% |
| !!! | GAAATTATTTATTGATTTTA+GGG | + | chr8.3:19644588-19644607 | MS.gene71911:intron | 10.0% |
| !! | AAAAAAAAATTAAGGAGAAA+AGG | + | chr8.3:19645522-19645541 | MS.gene71911:intron | 15.0% |
| !! | AACAGATTAATTAAATTGAA+AGG | + | chr8.3:19644915-19644934 | MS.gene71911:intron | 15.0% |
| !! | ATATTGATCAAATAAAGTTA+AGG | + | chr8.3:19645611-19645630 | MS.gene71911:intron | 15.0% |
| !! | CATAAAATTAATCAAGATTA+AGG | - | chr8.3:19645717-19645736 | None:intergenic | 15.0% |
| !! | CTCTCAAAAAAAAAAAATTA+AGG | + | chr8.3:19645514-19645533 | MS.gene71911:intron | 15.0% |
| !! | GAGTTCAAATTAATAAATTA+TGG | + | chr8.3:19644227-19644246 | MS.gene71911:intron | 15.0% |
| !! | GTTATATTTGCATAAAAAAA+TGG | - | chr8.3:19643633-19643652 | None:intergenic | 15.0% |
| !! | TATATTATATATGTAAGATG+GGG | + | chr8.3:19644740-19644759 | MS.gene71911:intron | 15.0% |
| !! | TTAATGTATGGTATATAAAA+TGG | - | chr8.3:19643879-19643898 | None:intergenic | 15.0% |
| !!! | CTTAATTTTTTTTTTTTGAG+AGG | - | chr8.3:19645516-19645535 | None:intergenic | 15.0% |
| !!! | GATTTTGATATATATGATAA+CGG | + | chr8.3:19644984-19645003 | MS.gene71911:intron | 15.0% |
| !!! | GGAAATTATTTATTGATTTT+AGG | + | chr8.3:19644587-19644606 | MS.gene71911:intron | 15.0% |
| !!! | GTTAAAAAAAAAAAGTACAA+TGG | - | chr8.3:19645092-19645111 | None:intergenic | 15.0% |
| !!! | TAGATATTTACATGTTTTAT+AGG | - | chr8.3:19645896-19645915 | None:intergenic | 15.0% |
| !! | AAAATTAATAACCCTAACTT+GGG | + | chr8.3:19645356-19645375 | MS.gene71911:intron | 20.0% |
| !! | AATAATACCTCATGAAAAAA+AGG | + | chr8.3:19644891-19644910 | MS.gene71911:intron | 20.0% |
| !! | AATTAAGAGTAAAAAAGAAG+AGG | - | chr8.3:19643855-19643874 | None:intergenic | 20.0% |
| !! | ACAATTCAAAATGAATGATA+TGG | + | chr8.3:19645995-19646014 | MS.gene71911:intron | 20.0% |
| !! | ATATGGTTCATCATAAAATT+TGG | - | chr8.3:19643993-19644012 | None:intergenic | 20.0% |
| !! | ATGTGAAGTAAATCTAAATA+CGG | + | chr8.3:19645171-19645190 | MS.gene71911:intron | 20.0% |
| !! | ATTTATAAGTTAAGGAGAAA+AGG | - | chr8.3:19645294-19645313 | None:intergenic | 20.0% |
| !! | CAACTATATGAAAATATAAC+AGG | + | chr8.3:19644957-19644976 | MS.gene71911:intron | 20.0% |
| !! | TAAAATTAATAACCCTAACT+TGG | + | chr8.3:19645355-19645374 | MS.gene71911:intron | 20.0% |
| !! | TAATCAAGATTAAGGATAAA+AGG | - | chr8.3:19645709-19645728 | None:intergenic | 20.0% |
| !! | TTCTATGATAAGCTAAATTA+AGG | - | chr8.3:19644553-19644572 | None:intergenic | 20.0% |
| !!! | AATCATGGACTAAAAAAAAT+TGG | - | chr8.3:19645954-19645973 | None:intergenic | 20.0% |
| !!! | ATAGAGACATTATATCTTTT+AGG | - | chr8.3:19644490-19644509 | None:intergenic | 20.0% |
| !!! | CTGTTATATTTTCATATAGT+TGG | - | chr8.3:19644959-19644978 | None:intergenic | 20.0% |
| !!! | TAGAGACATTATATCTTTTA+GGG | - | chr8.3:19644489-19644508 | None:intergenic | 20.0% |
| !!! | TGATCTTCTAAAATATTGTT+CGG | + | chr8.3:19644179-19644198 | MS.gene71911:intron | 20.0% |
| ! | AAAGTATGTCACATATCAAA+AGG | - | chr8.3:19646043-19646062 | None:intergenic | 25.0% |
| ! | CAAATAAAGTTAAGGAGAAA+AGG | + | chr8.3:19645619-19645638 | MS.gene71911:intron | 25.0% |
| ! | CAGAAATGAAAAAAAGTCAT+GGG | - | chr8.3:19646232-19646251 | None:intergenic | 25.0% |
| ! | GTTGCAAAGTAATTAATGTA+TGG | - | chr8.3:19643891-19643910 | None:intergenic | 25.0% |
| ! | TAAGTATCAACTGAATCATA+AGG | + | chr8.3:19644848-19644867 | MS.gene71911:intron | 25.0% |
| ! | TCAGAAATGAAAAAAAGTCA+TGG | - | chr8.3:19646233-19646252 | None:intergenic | 25.0% |
| ! | TTAAAGTAAGGAATGGTTTA+AGG | - | chr8.3:19644456-19644475 | None:intergenic | 25.0% |
| !! | ATTAAGGATAAAAGGTACAA+TGG | - | chr8.3:19645701-19645720 | None:intergenic | 25.0% |
| !! | CATTTTGAATTGTTGAAACA+GGG | - | chr8.3:19645988-19646007 | None:intergenic | 25.0% |
| !! | GACATTTTTCACAAAGAAAA+AGG | + | chr8.3:19645857-19645876 | MS.gene71911:intron | 25.0% |
| !! | TCATTTTGAATTGTTGAAAC+AGG | - | chr8.3:19645989-19646008 | None:intergenic | 25.0% |
| !! | TGTCCTTTTTGTTAATTTCT+CGG | + | chr8.3:19644650-19644669 | MS.gene71911:intron | 25.0% |
| !! | TTACTTTGTTTGAGTAACTT+AGG | + | chr8.3:19644113-19644132 | MS.gene71911:intron | 25.0% |
| !!! | AATCAATTTTTTTTTCTCCG+AGG | + | chr8.3:19645793-19645812 | MS.gene71911:intron | 25.0% |
| !!! | AATCATTTGGTGCATTTATA+TGG | - | chr8.3:19644010-19644029 | None:intergenic | 25.0% |
| !!! | CAAATTTTAGTTGAAGTTGA+TGG | + | chr8.3:19645426-19645445 | MS.gene71911:intron | 25.0% |
| !!! | GATTCCTTCATTTTTTTTTC+AGG | + | chr8.3:19643654-19643673 | MS.gene71911:intron | 25.0% |
| !!! | TATGGTTTTCTAGTTCATTT+TGG | + | chr8.3:19646013-19646032 | MS.gene71911:intron | 25.0% |
| ATAGAGATGAAAGCAAACTT+AGG | + | chr8.3:19644688-19644707 | MS.gene71911:intron | 30.0% | |
| ATGTCTCTATAAGTAATGAC+AGG | + | chr8.3:19644500-19644519 | MS.gene71911:intron | 30.0% | |
| CATAGAACAGTTTGTAATAC+TGG | + | chr8.3:19644566-19644585 | MS.gene71911:intron | 30.0% | |
| CTCACCTGAAAAAAAAATGA+AGG | - | chr8.3:19643661-19643680 | None:intergenic | 30.0% | |
| CTTTAAACAACTACTATTCC+GGG | - | chr8.3:19644811-19644830 | None:intergenic | 30.0% | |
| GTACCGAGAAATTAACAAAA+AGG | - | chr8.3:19644656-19644675 | None:intergenic | 30.0% | |
| TATAAGTTAAGGAGAAAAGG+AGG | - | chr8.3:19645291-19645310 | None:intergenic | 30.0% | |
| TGATATGATAATTTACCTGC+TGG | - | chr8.3:19646145-19646164 | None:intergenic | 30.0% | |
| TTTAAACAACTACTATTCCG+GGG | - | chr8.3:19644810-19644829 | None:intergenic | 30.0% | |
| ! | AAATTGAGAGTATAACCAGA+AGG | - | chr8.3:19643831-19643850 | None:intergenic | 30.0% |
| ! | ACTTTCTTTTGGTAAAAGGA+AGG | + | chr8.3:19644401-19644420 | MS.gene71911:intron | 30.0% |
| ! | GCTTTAAACAACTACTATTC+CGG | - | chr8.3:19644812-19644831 | None:intergenic | 30.0% |
| ! | TCATCATAAAATTTGGAGCT+GGG | - | chr8.3:19643986-19644005 | None:intergenic | 30.0% |
| ! | TCTAAGTAGTATAGCTTTTG+TGG | + | chr8.3:19643916-19643935 | MS.gene71911:intron | 30.0% |
| ! | TGGTGGATAGAAAAAAGATA+GGG | + | chr8.3:19644771-19644790 | MS.gene71911:intron | 30.0% |
| ! | TTCATCATAAAATTTGGAGC+TGG | - | chr8.3:19643987-19644006 | None:intergenic | 30.0% |
| ! | TTCCACTTTCTTTTGGTAAA+AGG | + | chr8.3:19644397-19644416 | MS.gene71911:intron | 30.0% |
| ! | TTCCTTTTACCAAAAGAAAG+TGG | - | chr8.3:19644402-19644421 | None:intergenic | 30.0% |
| ! | TTTATGTGGTTGCTATTGAT+TGG | + | chr8.3:19644345-19644364 | MS.gene71911:intron | 30.0% |
| ! | TTTTATGCTTCAGCAAATCT+TGG | + | chr8.3:19646325-19646344 | MS.gene71911:CDS | 30.0% |
| !! | AAACATTTTTCAGCGAGAAT+AGG | - | chr8.3:19646180-19646199 | None:intergenic | 30.0% |
| !! | AACATTTTTCAGCGAGAATA+GGG | - | chr8.3:19646179-19646198 | None:intergenic | 30.0% |
| !! | CTTCTAAAATATTGTTCGGT+TGG | + | chr8.3:19644183-19644202 | MS.gene71911:intron | 30.0% |
| !!! | AAAAACCATCGTTTTGATTG+AGG | - | chr8.3:19644143-19644162 | None:intergenic | 30.0% |
| !!! | AAAACCATCGTTTTGATTGA+GGG | - | chr8.3:19644142-19644161 | None:intergenic | 30.0% |
| !!! | CATTTTTTTTTTCTTGCAGC+AGG | + | chr8.3:19643947-19643966 | MS.gene71911:intron | 30.0% |
| !!! | TCTGTTACCTTTTTTTCATG+AGG | - | chr8.3:19644901-19644920 | None:intergenic | 30.0% |
| AAAGGAGGATCATACATTCT+TGG | - | chr8.3:19645276-19645295 | None:intergenic | 35.0% | |
| ACCAGAAGGTTATGATGATT+TGG | - | chr8.3:19643817-19643836 | None:intergenic | 35.0% | |
| ATCTCACGTCTGTTTATGAT+TGG | - | chr8.3:19644080-19644099 | None:intergenic | 35.0% | |
| CAATCCTGATATAACTCACA+GGG | + | chr8.3:19645232-19645251 | MS.gene71911:CDS | 35.0% | |
| CAGAAGGTTATGATGATTTG+GGG | - | chr8.3:19643815-19643834 | None:intergenic | 35.0% | |
| CCAGAAGGTTATGATGATTT+GGG | - | chr8.3:19643816-19643835 | None:intergenic | 35.0% | |
| GTGAACATAACAAAGTTGCT+CGG | - | chr8.3:19643511-19643530 | None:intergenic | 35.0% | |
| TAGTGATGTTTCATACAGCA+AGG | - | chr8.3:19643554-19643573 | None:intergenic | 35.0% | |
| TCAATCCTGATATAACTCAC+AGG | + | chr8.3:19645231-19645250 | MS.gene71911:CDS | 35.0% | |
| TCAGATTCTGATGAAAGATG+CGG | + | chr8.3:19646300-19646319 | MS.gene71911:CDS | 35.0% | |
| TCATTCTTTCTTATCCAGGA+AGG | + | chr8.3:19646271-19646290 | MS.gene71911:intron | 35.0% | |
| TGCATCATTCTTTCTTATCC+AGG | + | chr8.3:19646267-19646286 | MS.gene71911:intron | 35.0% | |
| TGTAAGATGGGGAAAATATG+TGG | + | chr8.3:19644751-19644770 | MS.gene71911:intron | 35.0% | |
| TGTCCCAAATGAAACTGATT+GGG | - | chr8.3:19643781-19643800 | None:intergenic | 35.0% | |
| TTAAACAACTACTATTCCGG+GGG | - | chr8.3:19644809-19644828 | None:intergenic | 35.0% | |
| TTCAACCACAACATTATCCT+TGG | + | chr8.3:19643470-19643489 | MS.gene71911:CDS | 35.0% | |
| TTGCTTTCATCTCTATATGC+TGG | - | chr8.3:19644684-19644703 | None:intergenic | 35.0% | |
| ! | AAAAGGAAGGACGTCTTTTA+TGG | + | chr8.3:19644414-19644433 | MS.gene71911:intron | 35.0% |
| ! | ATAAAATTTGGAGCTGGGTT+TGG | - | chr8.3:19643981-19644000 | None:intergenic | 35.0% |
| ! | CTAAGCTAGTGTTGAAAAGT+GGG | - | chr8.3:19643594-19643613 | None:intergenic | 35.0% |
| ! | GGGTTCAAGATCTGAATTTT+CGG | + | chr8.3:19645376-19645395 | MS.gene71911:intron | 35.0% |
| ! | TAAGCTAGTGTTGAAAAGTG+GGG | - | chr8.3:19643593-19643612 | None:intergenic | 35.0% |
| ! | TTTCAACACTAGCTTAGCTA+GGG | + | chr8.3:19643597-19643616 | MS.gene71911:intron | 35.0% |
| !! | ACATTTTTCAGCGAGAATAG+GGG | - | chr8.3:19646178-19646197 | None:intergenic | 35.0% |
| !! | GCACACTTTAAAGTAAGGAA+TGG | - | chr8.3:19644463-19644482 | None:intergenic | 35.0% |
| !! | GTGGTGGATAGAAAAAAGAT+AGG | + | chr8.3:19644770-19644789 | MS.gene71911:intron | 35.0% |
| !! | TTTTCAACACTAGCTTAGCT+AGG | + | chr8.3:19643596-19643615 | MS.gene71911:intron | 35.0% |
| !!! | TTTTTTTTTCTTGCAGCAGG+AGG | + | chr8.3:19643950-19643969 | MS.gene71911:intron | 35.0% |
| AAAACAAAGCCTCGTGAAGA+AGG | - | chr8.3:19644620-19644639 | None:intergenic | 40.0% | |
| AAACAAAGCCTCGTGAAGAA+GGG | - | chr8.3:19644619-19644638 | None:intergenic | 40.0% | |
| AAAGTGAATGTGTGGGAAGT+GGG | - | chr8.3:19646081-19646100 | None:intergenic | 40.0% | |
| AAATGAAACTGATTGGGGGA+TGG | - | chr8.3:19643775-19643794 | None:intergenic | 40.0% | |
| AAGAAAGTGGAACAAGACCA+AGG | - | chr8.3:19644389-19644408 | None:intergenic | 40.0% | |
| AAGACTGTTACTGTGAGATG+CGG | + | chr8.3:19643703-19643722 | MS.gene71911:CDS | 40.0% | |
| AAGATGGGGAAAATATGTGG+TGG | + | chr8.3:19644754-19644773 | MS.gene71911:intron | 40.0% | |
| AAGGAGAAAAGGATGCTCTT+TGG | + | chr8.3:19645533-19645552 | MS.gene71911:intron | 40.0% | |
| ACATAACAAAGTTGCTCGGA+AGG | - | chr8.3:19643507-19643526 | None:intergenic | 40.0% | |
| ACATACTTTCTGTGTGACAG+TGG | + | chr8.3:19646054-19646073 | MS.gene71911:intron | 40.0% | |
| AGAAAGTGGAACAAGACCAA+GGG | - | chr8.3:19644388-19644407 | None:intergenic | 40.0% | |
| ATCCCCCAATCAGTTTCATT+TGG | + | chr8.3:19643774-19643793 | MS.gene71911:CDS | 40.0% | |
| ATGAAGCGATTGTATGCTGA+GGG | - | chr8.3:19645048-19645067 | None:intergenic | 40.0% | |
| ATGAGACCAAAGTGAATGTG+TGG | - | chr8.3:19646089-19646108 | None:intergenic | 40.0% | |
| CAGATCTTGAACCCAAGTTA+GGG | - | chr8.3:19645370-19645389 | None:intergenic | 40.0% | |
| CAGATTCTGATGAAAGATGC+GGG | + | chr8.3:19646301-19646320 | MS.gene71911:CDS | 40.0% | |
| CATACTTTCTGTGTGACAGT+GGG | + | chr8.3:19646055-19646074 | MS.gene71911:intron | 40.0% | |
| CCCAAATCATCATAACCTTC+TGG | + | chr8.3:19643813-19643832 | MS.gene71911:CDS | 40.0% | |
| GATGTTTCATACAGCAAGGA+TGG | - | chr8.3:19643550-19643569 | None:intergenic | 40.0% | |
| GATTGACAGACTTAATGCGT+TGG | - | chr8.3:19645217-19645236 | None:intergenic | 40.0% | |
| GGATAATGTTGTGGTTGAAG+AGG | - | chr8.3:19643469-19643488 | None:intergenic | 40.0% | |
| GTCCCAAATGAAACTGATTG+GGG | - | chr8.3:19643780-19643799 | None:intergenic | 40.0% | |
| GTCTTCTTCATAGTCTGATC+AGG | - | chr8.3:19646113-19646132 | None:intergenic | 40.0% | |
| GTGTCCCAAATGAAACTGAT+TGG | - | chr8.3:19643782-19643801 | None:intergenic | 40.0% | |
| GTTTCCCTCAATCAAAACGA+TGG | + | chr8.3:19644135-19644154 | MS.gene71911:intron | 40.0% | |
| TCACGTCTGTTTATGATTGG+TGG | - | chr8.3:19644077-19644096 | None:intergenic | 40.0% | |
| TCAGATCTTGAACCCAAGTT+AGG | - | chr8.3:19645371-19645390 | None:intergenic | 40.0% | |
| TCCCAAATGAAACTGATTGG+GGG | - | chr8.3:19643779-19643798 | None:intergenic | 40.0% | |
| TCCCCCAATCAGTTTCATTT+GGG | + | chr8.3:19643775-19643794 | MS.gene71911:CDS | 40.0% | |
| TGAATTGTTGAAACAGGGCA+GGG | - | chr8.3:19645983-19646002 | None:intergenic | 40.0% | |
| TGAGACCAAAGTGAATGTGT+GGG | - | chr8.3:19646088-19646107 | None:intergenic | 40.0% | |
| TTGAATTGTTGAAACAGGGC+AGG | - | chr8.3:19645984-19646003 | None:intergenic | 40.0% | |
| ! | GCTAAGCTAGTGTTGAAAAG+TGG | - | chr8.3:19643595-19643614 | None:intergenic | 40.0% |
| ! | GGAGGCATAGAGAAATCATT+TGG | - | chr8.3:19644023-19644042 | None:intergenic | 40.0% |
| ! | TTGATTGGACAGTGTTGTTG+AGG | + | chr8.3:19644360-19644379 | MS.gene71911:intron | 40.0% |
| !! | GGCATGCACACTTTAAAGTA+AGG | - | chr8.3:19644468-19644487 | None:intergenic | 40.0% |
| !! | TTGAAGTTGATGGTTCTCCT+CGG | + | chr8.3:19645436-19645455 | MS.gene71911:intron | 40.0% |
| !!! | GGTCTTGTTCCACTTTCTTT+TGG | + | chr8.3:19644390-19644409 | MS.gene71911:intron | 40.0% |
| AACAAAGTTGCTCGGAAGGA+GGG | - | chr8.3:19643503-19643522 | None:intergenic | 45.0% | |
| AGGGCAGGGAAATACAATCA+TGG | - | chr8.3:19645969-19645988 | None:intergenic | 45.0% | |
| AGTAATGCACGCATGTTGAC+TGG | - | chr8.3:19643748-19643767 | None:intergenic | 45.0% | |
| ATTTCTCTATGCCTCCCACT+AGG | + | chr8.3:19644027-19644046 | MS.gene71911:CDS | 45.0% | |
| CAAAGTGAATGTGTGGGAAG+TGG | - | chr8.3:19646082-19646101 | None:intergenic | 45.0% | |
| CACTTCCCACACATTCACTT+TGG | + | chr8.3:19646080-19646099 | MS.gene71911:CDS | 45.0% | |
| CTAAATACGGTCCATCTGCA+GGG | + | chr8.3:19645184-19645203 | MS.gene71911:intron | 45.0% | |
| GAATCTGATCATCTCCTTCC+TGG | - | chr8.3:19646288-19646307 | None:intergenic | 45.0% | |
| GATGAAGCGATTGTATGCTG+AGG | - | chr8.3:19645049-19645068 | None:intergenic | 45.0% | |
| GCTTCCCTGTGAGTTATATC+AGG | - | chr8.3:19645239-19645258 | None:intergenic | 45.0% | |
| GTCTTGAACAAGCTTGTGCA+AGG | - | chr8.3:19643688-19643707 | None:intergenic | 45.0% | |
| GTGGTCCAAGGATAATGTTG+TGG | - | chr8.3:19643478-19643497 | None:intergenic | 45.0% | |
| TAACAAAGTTGCTCGGAAGG+AGG | - | chr8.3:19643504-19643523 | None:intergenic | 45.0% | |
| TAAGCCGAGTATGCAAACCT+CGG | - | chr8.3:19645813-19645832 | None:intergenic | 45.0% | |
| TCATCAGCTACAGTCCTAGT+GGG | - | chr8.3:19644044-19644063 | None:intergenic | 45.0% | |
| TCTAAATACGGTCCATCTGC+AGG | + | chr8.3:19645183-19645202 | MS.gene71911:intron | 45.0% | |
| TTCTCCGAGGTTTGCATACT+CGG | + | chr8.3:19645806-19645825 | MS.gene71911:intron | 45.0% | |
| ! | CTAGTGTTGAAAAGTGGGGA+TGG | - | chr8.3:19643589-19643608 | None:intergenic | 45.0% |
| ! | CTGTTTATGATTGGTGGTCG+TGG | - | chr8.3:19644071-19644090 | None:intergenic | 45.0% |
| ! | GGAACTCTCTGTCTTTTCTC+TGG | - | chr8.3:19645027-19645046 | None:intergenic | 45.0% |
| CTCATCAGCTACAGTCCTAG+TGG | - | chr8.3:19644045-19644064 | None:intergenic | 50.0% | |
| GAAGACAAATGTGTGCCAGC+AGG | + | chr8.3:19646127-19646146 | MS.gene71911:CDS | 50.0% | |
| GTGAGAGACACTCATTACCG+AGG | - | chr8.3:19645456-19645475 | None:intergenic | 50.0% | |
| ! | CAGTGTTGTTGAGGTACCCT+TGG | + | chr8.3:19644369-19644388 | MS.gene71911:intron | 50.0% |
| !! | AGCAAGGATGGTGTCACAGA+TGG | - | chr8.3:19643538-19643557 | None:intergenic | 50.0% |
| !! | AGGGTACTTTTCTTCTCCCC+CGG | + | chr8.3:19644790-19644809 | MS.gene71911:intron | 50.0% |
| !!! | CTCTGTCTTTTCTCTGGAGC+TGG | - | chr8.3:19645021-19645040 | None:intergenic | 50.0% |
| AAAGTTGCTCGGAAGGAGGG+AGG | - | chr8.3:19643500-19643519 | None:intergenic | 55.0% | |
| ATTCTTGGCAGCTGCGCTGA+AGG | - | chr8.3:19645261-19645280 | None:intergenic | 55.0% | |
| TCAGCTACAGTCCTAGTGGG+AGG | - | chr8.3:19644041-19644060 | None:intergenic | 55.0% | |
| TTGGATCTCGTCCCTGCAGA+TGG | - | chr8.3:19645198-19645217 | None:intergenic | 55.0% | |
| GGAAGGAGGGAGGTGGTCCA+AGG | - | chr8.3:19643490-19643509 | None:intergenic | 65.0% | |
| GGGCACAGCCCTTCTTCACG+AGG | + | chr8.3:19644608-19644627 | MS.gene71911:intron | 65.0% | |
| GTTGCTCGGAAGGAGGGAGG+TGG | - | chr8.3:19643497-19643516 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 19643459 | 19646363 | 19643459 | ID=MS.gene71911 |
| chr8.3 | mRNA | 19643459 | 19646363 | 19643459 | ID=MS.gene71911.t1;Parent=MS.gene71911 |
| chr8.3 | exon | 19643459 | 19643557 | 19643459 | ID=MS.gene71911.t1.exon1;Parent=MS.gene71911.t1 |
| chr8.3 | CDS | 19643459 | 19643557 | 19643459 | ID=cds.MS.gene71911.t1;Parent=MS.gene71911.t1 |
| chr8.3 | exon | 19643676 | 19643834 | 19643676 | ID=MS.gene71911.t1.exon2;Parent=MS.gene71911.t1 |
| chr8.3 | CDS | 19643676 | 19643834 | 19643676 | ID=cds.MS.gene71911.t1;Parent=MS.gene71911.t1 |
| chr8.3 | exon | 19643966 | 19644092 | 19643966 | ID=MS.gene71911.t1.exon3;Parent=MS.gene71911.t1 |
| chr8.3 | CDS | 19643966 | 19644092 | 19643966 | ID=cds.MS.gene71911.t1;Parent=MS.gene71911.t1 |
| chr8.3 | exon | 19645022 | 19645070 | 19645022 | ID=MS.gene71911.t1.exon4;Parent=MS.gene71911.t1 |
| chr8.3 | CDS | 19645022 | 19645070 | 19645022 | ID=cds.MS.gene71911.t1;Parent=MS.gene71911.t1 |
| chr8.3 | exon | 19645205 | 19645280 | 19645205 | ID=MS.gene71911.t1.exon5;Parent=MS.gene71911.t1 |
| chr8.3 | CDS | 19645205 | 19645280 | 19645205 | ID=cds.MS.gene71911.t1;Parent=MS.gene71911.t1 |
| chr8.3 | exon | 19646074 | 19646148 | 19646074 | ID=MS.gene71911.t1.exon6;Parent=MS.gene71911.t1 |
| chr8.3 | CDS | 19646074 | 19646148 | 19646074 | ID=cds.MS.gene71911.t1;Parent=MS.gene71911.t1 |
| chr8.3 | exon | 19646289 | 19646363 | 19646289 | ID=MS.gene71911.t1.exon7;Parent=MS.gene71911.t1 |
| chr8.3 | CDS | 19646289 | 19646363 | 19646289 | ID=cds.MS.gene71911.t1;Parent=MS.gene71911.t1 |
| Gene Sequence |
| Protein sequence |
