Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71936.t1 | XP_003608726.2 | 94.2 | 758 | 44 | 0 | 1 | 758 | 1 | 758 | 0.00E+00 | 1435.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71936.t1 | G7JIY0 | 94.2 | 758 | 44 | 0 | 1 | 758 | 1 | 758 | 0.0e+00 | 1435.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051718 | MS.gene71936 | 0.801542 | 8.57E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71936.t1 | MTR_4g101070 | 94.195 | 758 | 44 | 0 | 1 | 758 | 1 | 758 | 0.0 | 1458 |
| MS.gene71936.t1 | MTR_4g101050 | 83.004 | 759 | 121 | 4 | 3 | 758 | 1 | 754 | 0.0 | 1263 |
| MS.gene71936.t1 | MTR_4g101070 | 94.585 | 591 | 32 | 0 | 1 | 591 | 1 | 591 | 0.0 | 1143 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71936.t1 | AT4G17250 | 47.275 | 734 | 371 | 9 | 8 | 733 | 3 | 728 | 0.0 | 670 |
| MS.gene71936.t1 | AT5G47580 | 48.697 | 729 | 364 | 5 | 8 | 731 | 6 | 729 | 0.0 | 669 |
| MS.gene71936.t1 | AT4G17250 | 49.522 | 628 | 306 | 7 | 8 | 630 | 3 | 624 | 0.0 | 611 |
| MS.gene71936.t1 | AT4G17250 | 45.055 | 637 | 334 | 9 | 105 | 733 | 1 | 629 | 0.0 | 535 |
Find 125 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACACGCTATATCTGTTAA+AGG | 0.163957 | 8.3:-20082305 | MS.gene71936:CDS |
| TTGGATGCCAATACTTTAAT+AGG | 0.211350 | 8.3:+20082464 | None:intergenic |
| TCAATGTTGCATGGATTTAA+AGG | 0.244994 | 8.3:-20082905 | MS.gene71936:CDS |
| AACAATTCAATAACAAGTTT+TGG | 0.257554 | 8.3:+20082941 | None:intergenic |
| ATATTATCTTGTGTGTATTA+AGG | 0.259802 | 8.3:-20082504 | MS.gene71936:CDS |
| AATGGTACAGATTCGGGTTT+AGG | 0.260859 | 8.3:-20083094 | MS.gene71936:CDS |
| TGGTGTTATTATGTTTCTTA+TGG | 0.269837 | 8.3:-20083836 | MS.gene71936:CDS |
| TCCATGTAATGTTTCATCTT+TGG | 0.271186 | 8.3:+20083772 | None:intergenic |
| GAGATGAATTGTTGAAATTC+TGG | 0.271539 | 8.3:-20083663 | MS.gene71936:CDS |
| AGGCAAATGTCCCTCAATTT+AGG | 0.283800 | 8.3:+20082056 | None:intergenic |
| CTGGTGTTATTTATGAGTTT+TGG | 0.301370 | 8.3:-20083867 | MS.gene71936:CDS |
| TAATGTCTCAAGTGTCTCTT+TGG | 0.302092 | 8.3:+20082568 | None:intergenic |
| TCAGTTTCATGTACTGCTTC+TGG | 0.302903 | 8.3:-20083598 | MS.gene71936:CDS |
| AAATTCAATGGTACAGATTC+GGG | 0.312280 | 8.3:-20083100 | MS.gene71936:CDS |
| TGAAACCATGTTGAATGTTT+TGG | 0.313595 | 8.3:-20083944 | MS.gene71936:CDS |
| TTTGTGAGTATTTCAAGAAT+TGG | 0.319604 | 8.3:-20083129 | MS.gene71936:CDS |
| GTTATGATTGCTGATATATT+AGG | 0.327555 | 8.3:-20082347 | MS.gene71936:CDS |
| TTCGATCTTATTTGATGTCT+TGG | 0.342435 | 8.3:-20083531 | MS.gene71936:CDS |
| AAAATTCAATGGTACAGATT+CGG | 0.346213 | 8.3:-20083101 | MS.gene71936:CDS |
| ATTTGTATACAGTTTGTAAC+TGG | 0.348616 | 8.3:-20083886 | MS.gene71936:CDS |
| TTACCCTATGCGGTGGATCT+TGG | 0.348786 | 8.3:-20083155 | MS.gene71936:CDS |
| TTTGACGGAAACAGCGATAA+TGG | 0.361646 | 8.3:+20084092 | None:intergenic |
| TACCCTATGCGGTGGATCTT+GGG | 0.363258 | 8.3:-20083154 | MS.gene71936:CDS |
| TGCTTTAATTTGCACTATCA+TGG | 0.383099 | 8.3:-20084004 | MS.gene71936:CDS |
| TCGCGGCAACAATCCACTTT+AGG | 0.385073 | 8.3:+20082179 | None:intergenic |
| ACAGCCTCTCACGAGTATTA+TGG | 0.398293 | 8.3:+20082384 | None:intergenic |
| TTGCATGGATTTAAAGGAGT+TGG | 0.399932 | 8.3:-20082899 | MS.gene71936:CDS |
| GGATTGGTAACCGGTGGTTT+AGG | 0.400590 | 8.3:-20083276 | MS.gene71936:CDS |
| GCATCAGAACTCGCAAACTA+TGG | 0.407134 | 8.3:-20084155 | MS.gene71936:CDS |
| AAAGAGAGCCTTTCCTAAAG+TGG | 0.408572 | 8.3:-20082192 | MS.gene71936:CDS |
| TGGCATGGAGCTGATCTCTA+TGG | 0.410840 | 8.3:-20082641 | MS.gene71936:CDS |
| TTACCAATCCGAAAACTAAT+CGG | 0.413192 | 8.3:+20083289 | None:intergenic |
| GCTAATTCCATGCCTTCTCT+TGG | 0.416271 | 8.3:-20083982 | MS.gene71936:CDS |
| ATAGGAAGTGACCAACTATA+TGG | 0.422490 | 8.3:+20082830 | None:intergenic |
| GTTTAATGCTTAAGCAAAAC+AGG | 0.422568 | 8.3:-20082136 | MS.gene71936:CDS |
| ATGCTTGCTAGTGTAACAAT+AGG | 0.433859 | 8.3:+20082812 | None:intergenic |
| ACAGATTCGGGTTTAGGAAC+AGG | 0.437251 | 8.3:-20083088 | MS.gene71936:CDS |
| TTACATGGAGTTGAAGTATA+AGG | 0.439685 | 8.3:-20083758 | MS.gene71936:CDS |
| GGTGTCCAAATGTGAGGAAA+AGG | 0.448572 | 8.3:-20083378 | MS.gene71936:CDS |
| ATTGTGATGCAACTACTCAT+TGG | 0.449727 | 8.3:-20082988 | MS.gene71936:CDS |
| TAACCGGTGGTTTAGGAAGT+TGG | 0.452691 | 8.3:-20083269 | MS.gene71936:CDS |
| AGCATGGCCTATTAAAGTAT+TGG | 0.452708 | 8.3:-20082471 | MS.gene71936:CDS |
| GCTTATTCTGTACATTGCAT+TGG | 0.454548 | 8.3:+20082445 | None:intergenic |
| AGAGAAGCAGTTTATGTGCT+TGG | 0.467580 | 8.3:-20082245 | MS.gene71936:CDS |
| ATCTTATTTGATGTCTTGGT+CGG | 0.471584 | 8.3:-20083527 | MS.gene71936:CDS |
| TCCAAATGTGGAAAAGTGTT+TGG | 0.472475 | 8.3:-20082777 | MS.gene71936:CDS |
| GACCGAATTCTTCCTTTGCA+TGG | 0.473735 | 8.3:-20082863 | MS.gene71936:CDS |
| CTCCAGTGATGATAGTATAG+AGG | 0.477229 | 8.3:+20082103 | None:intergenic |
| GCATGGCTCCTCCTAAATTG+AGG | 0.479692 | 8.3:-20082067 | MS.gene71936:CDS |
| ATCTTGATTCAACAGAAGAA+TGG | 0.480699 | 8.3:+20082418 | None:intergenic |
| TAGATTCCTATCCATGGCAT+TGG | 0.480860 | 8.3:+20084234 | None:intergenic |
| CATGGCTCCTCCTAAATTGA+GGG | 0.481009 | 8.3:-20082066 | MS.gene71936:CDS |
| CACCATGCAAAGGAAGAATT+CGG | 0.481803 | 8.3:+20082861 | None:intergenic |
| GGAAACAGCGATAATGGTTA+AGG | 0.482747 | 8.3:+20084098 | None:intergenic |
| TTTCTGTATTAAACTACAGA+TGG | 0.484663 | 8.3:-20083218 | MS.gene71936:CDS |
| GAATAGTGCTATTGAAGAGA+GGG | 0.485535 | 8.3:-20082279 | MS.gene71936:CDS |
| GAAAATAACATTGACAAAGA+AGG | 0.485570 | 8.3:-20082701 | MS.gene71936:CDS |
| TTACTGGACTGATAGTTTAG+TGG | 0.485603 | 8.3:-20083326 | MS.gene71936:CDS |
| GGTTTGCTGCTGTTAAATAT+AGG | 0.487367 | 8.3:-20083399 | MS.gene71936:CDS |
| AGCGGTCCTCAATTTCTACT+TGG | 0.488855 | 8.3:-20083625 | MS.gene71936:CDS |
| ATAGTTCAAGTTGCTGCTGT+TGG | 0.491201 | 8.3:-20083451 | MS.gene71936:CDS |
| ACATCTGAAATTGTTTGGCA+TGG | 0.494574 | 8.3:-20082656 | MS.gene71936:CDS |
| TGAATAGTGCTATTGAAGAG+AGG | 0.495189 | 8.3:-20082280 | MS.gene71936:CDS |
| AATTGGAAATCAAAATTCAA+TGG | 0.495406 | 8.3:-20083112 | MS.gene71936:CDS |
| CAAGTTGCTGCTGTTGGCGT+TGG | 0.498230 | 8.3:-20083445 | MS.gene71936:CDS |
| TTGTGATGCAACTACTCATT+GGG | 0.503945 | 8.3:-20082987 | MS.gene71936:CDS |
| ATCCCAAGATCCACCGCATA+GGG | 0.509363 | 8.3:+20083152 | None:intergenic |
| ATTGTTGAAATTCTGGATGA+TGG | 0.511008 | 8.3:-20083656 | MS.gene71936:CDS |
| TATAGTTGCACTTCCAAATG+TGG | 0.517480 | 8.3:-20082789 | MS.gene71936:CDS |
| GAGATCAACAGAGAGTTTGA+CGG | 0.519283 | 8.3:+20084077 | None:intergenic |
| AAAATAACATTGACAAAGAA+GGG | 0.520371 | 8.3:-20082700 | MS.gene71936:CDS |
| TCCCTCTATACTATCATCAC+TGG | 0.526334 | 8.3:-20082105 | MS.gene71936:CDS |
| GCAGAAGGCAGGACCTAAAA+CGG | 0.527369 | 8.3:-20083066 | MS.gene71936:CDS |
| GCGAGACTAACATCGAAGAT+TGG | 0.527630 | 8.3:-20082160 | MS.gene71936:CDS |
| TAGTGCTATTGAAGAGAGGG+AGG | 0.527847 | 8.3:-20082276 | MS.gene71936:CDS |
| CTGGTGATTGTGATTACAAA+TGG | 0.529169 | 8.3:-20083492 | MS.gene71936:CDS |
| TGATCATGACGGTGAGGCAT+AGG | 0.532938 | 8.3:+20084048 | None:intergenic |
| GTCCTCAATTTCTACTTGGA+AGG | 0.534932 | 8.3:-20083621 | MS.gene71936:CDS |
| TTGAGACAAAAGTATTTGCA+AGG | 0.536044 | 8.3:+20084129 | None:intergenic |
| TTCTGTATTAAACTACAGAT+GGG | 0.537735 | 8.3:-20083217 | MS.gene71936:CDS |
| GTGAGGAAAAGGAGTAGCAA+GGG | 0.538430 | 8.3:-20083367 | MS.gene71936:CDS |
| ACCAAAGATGAAACATTACA+TGG | 0.541625 | 8.3:-20083773 | MS.gene71936:CDS |
| GTGTAGAACCTCCATATAGT+TGG | 0.552822 | 8.3:-20082841 | MS.gene71936:CDS |
| AGGTGAGGAAGAGTTGGTTG+AGG | 0.553378 | 8.3:-20083026 | MS.gene71936:CDS |
| AATCCCAAGATCCACCGCAT+AGG | 0.553870 | 8.3:+20083151 | None:intergenic |
| AATGTCTCAAGTGTCTCTTT+GGG | 0.563830 | 8.3:+20082569 | None:intergenic |
| CGGGTTTAGGAACAGGCAGA+AGG | 0.567799 | 8.3:-20083081 | MS.gene71936:CDS |
| CGGTTTATTCTGCATCTCGA+AGG | 0.569485 | 8.3:-20083046 | MS.gene71936:CDS |
| TTTAGGAACAGGCAGAAGGC+AGG | 0.571095 | 8.3:-20083077 | MS.gene71936:CDS |
| TGTGACACCAAGAGAAGGCA+TGG | 0.576519 | 8.3:+20083975 | None:intergenic |
| TCTCGAAGGTGAGGAAGAGT+TGG | 0.577120 | 8.3:-20083032 | MS.gene71936:CDS |
| TCCAGTGATGATAGTATAGA+GGG | 0.580375 | 8.3:+20082104 | None:intergenic |
| GCAACAATCCACTTTAGGAA+AGG | 0.581142 | 8.3:+20082184 | None:intergenic |
| GAGCTGATCTCTATGGAAAG+TGG | 0.582667 | 8.3:-20082634 | MS.gene71936:CDS |
| GCAGCAAACCACCTAAAAGC+AGG | 0.583806 | 8.3:+20083412 | None:intergenic |
| GACCTTCCAAGTAGAAATTG+AGG | 0.586703 | 8.3:+20083619 | None:intergenic |
| TTTCGATTTACCCTATGCGG+TGG | 0.586710 | 8.3:-20083162 | MS.gene71936:CDS |
| GCTATGTAGATTCCTATCCA+TGG | 0.588339 | 8.3:+20084228 | None:intergenic |
| ATTTCAGCAAACCAATGCCA+TGG | 0.592792 | 8.3:-20084245 | MS.gene71936:CDS |
| TTCTGTGTGACACCAAGAGA+AGG | 0.606691 | 8.3:+20083970 | None:intergenic |
| ATGTCTGCAGATCTCATCAA+AGG | 0.611092 | 8.3:-20084177 | MS.gene71936:CDS |
| TTGTTTCGATTTACCCTATG+CGG | 0.611581 | 8.3:-20083165 | MS.gene71936:CDS |
| CAAATGTCCCTCAATTTAGG+AGG | 0.613143 | 8.3:+20082059 | None:intergenic |
| ACTACTCATTGGGTTGAACA+AGG | 0.615223 | 8.3:-20082977 | MS.gene71936:CDS |
| AGCAAACCAATGCCATGGAT+AGG | 0.618922 | 8.3:-20084240 | MS.gene71936:CDS |
| AATATAGGTGTCCAAATGTG+AGG | 0.619576 | 8.3:-20083384 | MS.gene71936:CDS |
| GAGCCAACTTCCTAAACCAC+CGG | 0.620931 | 8.3:+20083266 | None:intergenic |
| TATTCTGCATCTCGAAGGTG+AGG | 0.624822 | 8.3:-20083041 | MS.gene71936:CDS |
| CATAGCCAAAACATTCAACA+TGG | 0.624825 | 8.3:+20083939 | None:intergenic |
| TATTAAACTACAGATGGGGA+TGG | 0.629487 | 8.3:-20083212 | MS.gene71936:CDS |
| CTCTATACTATCATCACTGG+AGG | 0.632764 | 8.3:-20082102 | MS.gene71936:CDS |
| TGTGAGGAAAAGGAGTAGCA+AGG | 0.636275 | 8.3:-20083368 | MS.gene71936:CDS |
| GGAGGAGAATGACATTTGCA+TGG | 0.636716 | 8.3:-20082084 | MS.gene71936:CDS |
| GGAGGTTCTACACCATGCAA+AGG | 0.640891 | 8.3:+20082851 | None:intergenic |
| TGAGACAAAAGTATTTGCAA+GGG | 0.647084 | 8.3:+20084130 | None:intergenic |
| ACTTTAATAGGCCATGCTGA+AGG | 0.649984 | 8.3:+20082476 | None:intergenic |
| TCTGTATTAAACTACAGATG+GGG | 0.654899 | 8.3:-20083216 | MS.gene71936:CDS |
| GCTTTGCTAGCTGATCATGA+CGG | 0.671296 | 8.3:+20084037 | None:intergenic |
| AAGACCATAATACTCGTGAG+AGG | 0.671965 | 8.3:-20082388 | MS.gene71936:CDS |
| AATCTTCGATGTTAGTCTCG+CGG | 0.674061 | 8.3:+20082162 | None:intergenic |
| GGAAGTGACCAACTATATGG+AGG | 0.678302 | 8.3:+20082833 | None:intergenic |
| TTAAGGTAAGTCCTTCAGCA+TGG | 0.681137 | 8.3:-20082487 | MS.gene71936:CDS |
| TGGATGATGGCTCATACTAG+CGG | 0.682855 | 8.3:-20083643 | MS.gene71936:CDS |
| CCTTTAACAGATATAGCGTG+TGG | 0.685524 | 8.3:+20082305 | None:intergenic |
| GCTAGCTGATCATGACGGTG+AGG | 0.686156 | 8.3:+20084042 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAACATTGACAAAGAA+GGG | - | chr8.3:20083640-20083659 | MS.gene71936:CDS | 20.0% |
| !! | AATTGGAAATCAAAATTCAA+TGG | - | chr8.3:20083228-20083247 | MS.gene71936:CDS | 20.0% |
| !! | ATATTATCTTGTGTGTATTA+AGG | - | chr8.3:20083836-20083855 | MS.gene71936:CDS | 20.0% |
| !!! | AACAATTCAATAACAAGTTT+TGG | + | chr8.3:20083402-20083421 | None:intergenic | 20.0% |
| ! | AAAAAATGTTCAATGTTGCA+TGG | - | chr8.3:20083426-20083445 | MS.gene71936:CDS | 25.0% |
| ! | AAAATTCAATGGTACAGATT+CGG | - | chr8.3:20083239-20083258 | MS.gene71936:CDS | 25.0% |
| ! | ATTTGTATACAGTTTGTAAC+TGG | - | chr8.3:20082454-20082473 | MS.gene71936:CDS | 25.0% |
| ! | GAAAATAACATTGACAAAGA+AGG | - | chr8.3:20083639-20083658 | MS.gene71936:CDS | 25.0% |
| ! | GTTATGATTGCTGATATATT+AGG | - | chr8.3:20083993-20084012 | MS.gene71936:CDS | 25.0% |
| ! | TTCTGTATTAAACTACAGAT+GGG | - | chr8.3:20083123-20083142 | MS.gene71936:CDS | 25.0% |
| ! | TTTCTGTATTAAACTACAGA+TGG | - | chr8.3:20083122-20083141 | MS.gene71936:CDS | 25.0% |
| ! | TTTGTGAGTATTTCAAGAAT+TGG | - | chr8.3:20083211-20083230 | MS.gene71936:CDS | 25.0% |
| !! | GAAAAACATCTGAAATTGTT+TGG | - | chr8.3:20083679-20083698 | MS.gene71936:CDS | 25.0% |
| !! | GTTTGGTGAAAAATTTGATT+AGG | - | chr8.3:20083580-20083599 | MS.gene71936:CDS | 25.0% |
| !! | TTTTCGATGAAATTCACATA+AGG | + | chr8.3:20083624-20083643 | None:intergenic | 25.0% |
| !!! | TGGTGTTATTATGTTTCTTA+TGG | - | chr8.3:20082504-20082523 | MS.gene71936:CDS | 25.0% |
| AAATTCAATGGTACAGATTC+GGG | - | chr8.3:20083240-20083259 | MS.gene71936:CDS | 30.0% | |
| ACCAAAGATGAAACATTACA+TGG | - | chr8.3:20082567-20082586 | MS.gene71936:CDS | 30.0% | |
| ATCTTGATTCAACAGAAGAA+TGG | + | chr8.3:20083925-20083944 | None:intergenic | 30.0% | |
| ATTGTTGAAATTCTGGATGA+TGG | - | chr8.3:20082684-20082703 | MS.gene71936:CDS | 30.0% | |
| GAGATGAATTGTTGAAATTC+TGG | - | chr8.3:20082677-20082696 | MS.gene71936:CDS | 30.0% | |
| GTTTAATGCTTAAGCAAAAC+AGG | - | chr8.3:20084204-20084223 | MS.gene71936:CDS | 30.0% | |
| TCAATGTTGCATGGATTTAA+AGG | - | chr8.3:20083435-20083454 | MS.gene71936:CDS | 30.0% | |
| TCCATGTAATGTTTCATCTT+TGG | + | chr8.3:20082571-20082590 | None:intergenic | 30.0% | |
| TCTGTATTAAACTACAGATG+GGG | - | chr8.3:20083124-20083143 | MS.gene71936:CDS | 30.0% | |
| TTACATGGAGTTGAAGTATA+AGG | - | chr8.3:20082582-20082601 | MS.gene71936:CDS | 30.0% | |
| TTACCAATCCGAAAACTAAT+CGG | + | chr8.3:20083054-20083073 | None:intergenic | 30.0% | |
| TTGGATGCCAATACTTTAAT+AGG | + | chr8.3:20083879-20083898 | None:intergenic | 30.0% | |
| ! | ATCTTATTTGATGTCTTGGT+CGG | - | chr8.3:20082813-20082832 | MS.gene71936:CDS | 30.0% |
| ! | TGAAACCATGTTGAATGTTT+TGG | - | chr8.3:20082396-20082415 | MS.gene71936:CDS | 30.0% |
| ! | TTCGATCTTATTTGATGTCT+TGG | - | chr8.3:20082809-20082828 | MS.gene71936:CDS | 30.0% |
| !! | TGAGACAAAAGTATTTGCAA+GGG | + | chr8.3:20082213-20082232 | None:intergenic | 30.0% |
| !! | TGCTTTAATTTGCACTATCA+TGG | - | chr8.3:20082336-20082355 | MS.gene71936:CDS | 30.0% |
| !! | TTGAGACAAAAGTATTTGCA+AGG | + | chr8.3:20082214-20082233 | None:intergenic | 30.0% |
| !!! | AAGGGAATTTTTCAAGTAGA+AGG | - | chr8.3:20082991-20083010 | MS.gene71936:CDS | 30.0% |
| !!! | CTGGTGTTATTTATGAGTTT+TGG | - | chr8.3:20082473-20082492 | MS.gene71936:CDS | 30.0% |
| !!! | TATGAGTTTTGGATTGAACA+TGG | - | chr8.3:20082484-20082503 | MS.gene71936:CDS | 30.0% |
| !!! | TTTTTCAAGTAGAAGGTTAC+TGG | - | chr8.3:20082998-20083017 | MS.gene71936:CDS | 30.0% |
| AAAAACATGTGCAACAGTGA+AGG | - | chr8.3:20082055-20082074 | MS.gene71936:CDS | 35.0% | |
| AATATAGGTGTCCAAATGTG+AGG | - | chr8.3:20082956-20082975 | MS.gene71936:CDS | 35.0% | |
| AATGTCTCAAGTGTCTCTTT+GGG | + | chr8.3:20083774-20083793 | None:intergenic | 35.0% | |
| AGCATGGCCTATTAAAGTAT+TGG | - | chr8.3:20083869-20083888 | MS.gene71936:CDS | 35.0% | |
| ATAGGAAGTGACCAACTATA+TGG | + | chr8.3:20083513-20083532 | None:intergenic | 35.0% | |
| ATTGTGATGCAACTACTCAT+TGG | - | chr8.3:20083352-20083371 | MS.gene71936:CDS | 35.0% | |
| CATAGCCAAAACATTCAACA+TGG | + | chr8.3:20082404-20082423 | None:intergenic | 35.0% | |
| CTGGTGATTGTGATTACAAA+TGG | - | chr8.3:20082848-20082867 | MS.gene71936:CDS | 35.0% | |
| GCTTATTCTGTACATTGCAT+TGG | + | chr8.3:20083898-20083917 | None:intergenic | 35.0% | |
| TAATGTCTCAAGTGTCTCTT+TGG | + | chr8.3:20083775-20083794 | None:intergenic | 35.0% | |
| TAGCTGAGTTTGCAAAAACA+AGG | - | chr8.3:20083793-20083812 | MS.gene71936:CDS | 35.0% | |
| TATAGTTGCACTTCCAAATG+TGG | - | chr8.3:20083551-20083570 | MS.gene71936:CDS | 35.0% | |
| TATTAAACTACAGATGGGGA+TGG | - | chr8.3:20083128-20083147 | MS.gene71936:CDS | 35.0% | |
| TCCAGTGATGATAGTATAGA+GGG | + | chr8.3:20084239-20084258 | None:intergenic | 35.0% | |
| TTACTGGACTGATAGTTTAG+TGG | - | chr8.3:20083014-20083033 | MS.gene71936:CDS | 35.0% | |
| TTGCATGGATTTAAAGGAGT+TGG | - | chr8.3:20083441-20083460 | MS.gene71936:CDS | 35.0% | |
| TTGTGATGCAACTACTCATT+GGG | - | chr8.3:20083353-20083372 | MS.gene71936:CDS | 35.0% | |
| TTGTTTCGATTTACCCTATG+CGG | - | chr8.3:20083175-20083194 | MS.gene71936:CDS | 35.0% | |
| ! | ACATCTGAAATTGTTTGGCA+TGG | - | chr8.3:20083684-20083703 | MS.gene71936:CDS | 35.0% |
| ! | ACCAAACACTTTTCCACATT+TGG | + | chr8.3:20083567-20083586 | None:intergenic | 35.0% |
| ! | ATGCTTGCTAGTGTAACAAT+AGG | + | chr8.3:20083531-20083550 | None:intergenic | 35.0% |
| ! | GAATAGTGCTATTGAAGAGA+GGG | - | chr8.3:20084061-20084080 | MS.gene71936:CDS | 35.0% |
| ! | GATGCAGAATAAACCGTTTT+AGG | + | chr8.3:20083290-20083309 | None:intergenic | 35.0% |
| ! | TGAATAGTGCTATTGAAGAG+AGG | - | chr8.3:20084060-20084079 | MS.gene71936:CDS | 35.0% |
| !! | GGTTTGCTGCTGTTAAATAT+AGG | - | chr8.3:20082941-20082960 | MS.gene71936:CDS | 35.0% |
| !! | TCCAAATGTGGAAAAGTGTT+TGG | - | chr8.3:20083563-20083582 | MS.gene71936:CDS | 35.0% |
| !!! | CATGTTGAATGTTTTGGCTA+TGG | - | chr8.3:20082402-20082421 | MS.gene71936:CDS | 35.0% |
| !!! | TTAGTTTTCGGATTGGTAAC+CGG | - | chr8.3:20083055-20083074 | MS.gene71936:CDS | 35.0% |
| !!! | TTTGGGAGTCTTGTTTTGAA+GGG | + | chr8.3:20083757-20083776 | None:intergenic | 35.0% |
| AAAGAGAGCCTTTCCTAAAG+TGG | - | chr8.3:20084148-20084167 | MS.gene71936:CDS | 40.0% | |
| AAGACCATAATACTCGTGAG+AGG | - | chr8.3:20083952-20083971 | MS.gene71936:CDS | 40.0% | |
| ACTTTAATAGGCCATGCTGA+AGG | + | chr8.3:20083867-20083886 | None:intergenic | 40.0% | |
| AGAGAAGCAGTTTATGTGCT+TGG | - | chr8.3:20084095-20084114 | MS.gene71936:CDS | 40.0% | |
| AGGCAAATGTCCCTCAATTT+AGG | + | chr8.3:20084287-20084306 | None:intergenic | 40.0% | |
| ATGTCTGCAGATCTCATCAA+AGG | - | chr8.3:20082163-20082182 | MS.gene71936:CDS | 40.0% | |
| ATTTCAGCAAACCAATGCCA+TGG | - | chr8.3:20082095-20082114 | MS.gene71936:CDS | 40.0% | |
| CAAATGTCCCTCAATTTAGG+AGG | + | chr8.3:20084284-20084303 | None:intergenic | 40.0% | |
| CACCATGCAAAGGAAGAATT+CGG | + | chr8.3:20083482-20083501 | None:intergenic | 40.0% | |
| CCACACGCTATATCTGTTAA+AGG | - | chr8.3:20084035-20084054 | MS.gene71936:CDS | 40.0% | |
| CCTTTAACAGATATAGCGTG+TGG | + | chr8.3:20084038-20084057 | None:intergenic | 40.0% | |
| CTCCAGTGATGATAGTATAG+AGG | + | chr8.3:20084240-20084259 | None:intergenic | 40.0% | |
| CTCTATACTATCATCACTGG+AGG | - | chr8.3:20084238-20084257 | MS.gene71936:CDS | 40.0% | |
| GACCTTCCAAGTAGAAATTG+AGG | + | chr8.3:20082724-20082743 | None:intergenic | 40.0% | |
| GAGATCAACAGAGAGTTTGA+CGG | + | chr8.3:20082266-20082285 | None:intergenic | 40.0% | |
| GCTATGTAGATTCCTATCCA+TGG | + | chr8.3:20082115-20082134 | None:intergenic | 40.0% | |
| GTCCTCAATTTCTACTTGGA+AGG | - | chr8.3:20082719-20082738 | MS.gene71936:CDS | 40.0% | |
| GTGTAGAACCTCCATATAGT+TGG | - | chr8.3:20083499-20083518 | MS.gene71936:CDS | 40.0% | |
| TAGATTCCTATCCATGGCAT+TGG | + | chr8.3:20082109-20082128 | None:intergenic | 40.0% | |
| TCAGTTTCATGTACTGCTTC+TGG | - | chr8.3:20082742-20082761 | MS.gene71936:CDS | 40.0% | |
| TCCCTCTATACTATCATCAC+TGG | - | chr8.3:20084235-20084254 | MS.gene71936:CDS | 40.0% | |
| TTAAGGTAAGTCCTTCAGCA+TGG | - | chr8.3:20083853-20083872 | MS.gene71936:CDS | 40.0% | |
| TTTGACGGAAACAGCGATAA+TGG | + | chr8.3:20082251-20082270 | None:intergenic | 40.0% | |
| ! | AATCTTCGATGTTAGTCTCG+CGG | + | chr8.3:20084181-20084200 | None:intergenic | 40.0% |
| ! | AATGGTACAGATTCGGGTTT+AGG | - | chr8.3:20083246-20083265 | MS.gene71936:CDS | 40.0% |
| ! | CTACTCCTTTTCCTCACATT+TGG | + | chr8.3:20082970-20082989 | None:intergenic | 40.0% |
| ! | GCAACAATCCACTTTAGGAA+AGG | + | chr8.3:20084159-20084178 | None:intergenic | 40.0% |
| ! | GGAAACAGCGATAATGGTTA+AGG | + | chr8.3:20082245-20082264 | None:intergenic | 40.0% |
| ! | TGGTCGGTTAAATTTTGTGC+TGG | - | chr8.3:20082829-20082848 | MS.gene71936:CDS | 40.0% |
| !! | ACTACTCATTGGGTTGAACA+AGG | - | chr8.3:20083363-20083382 | MS.gene71936:CDS | 40.0% |
| !! | ATAGTTCAAGTTGCTGCTGT+TGG | - | chr8.3:20082889-20082908 | MS.gene71936:CDS | 40.0% |
| !! | GTACTATTGCTCCTGCTTTT+AGG | - | chr8.3:20082917-20082936 | MS.gene71936:CDS | 40.0% |
| !!! | AGTCCGATTAGTTTTCGGAT+TGG | - | chr8.3:20083048-20083067 | MS.gene71936:CDS | 40.0% |
| !!! | CTTTGGGAGTCTTGTTTTGA+AGG | + | chr8.3:20083758-20083777 | None:intergenic | 40.0% |
| !!! | GAGAGAGTCCGATTAGTTTT+CGG | - | chr8.3:20083043-20083062 | MS.gene71936:CDS | 40.0% |
| ACAGCCTCTCACGAGTATTA+TGG | + | chr8.3:20083959-20083978 | None:intergenic | 45.0% | |
| AGCAAACCAATGCCATGGAT+AGG | - | chr8.3:20082100-20082119 | MS.gene71936:CDS | 45.0% | |
| AGCGGTCCTCAATTTCTACT+TGG | - | chr8.3:20082715-20082734 | MS.gene71936:CDS | 45.0% | |
| CATGGCTCCTCCTAAATTGA+GGG | - | chr8.3:20084274-20084293 | MS.gene71936:CDS | 45.0% | |
| CGGTTTATTCTGCATCTCGA+AGG | - | chr8.3:20083294-20083313 | MS.gene71936:CDS | 45.0% | |
| GACCGAATTCTTCCTTTGCA+TGG | - | chr8.3:20083477-20083496 | MS.gene71936:CDS | 45.0% | |
| GAGCTGATCTCTATGGAAAG+TGG | - | chr8.3:20083706-20083725 | MS.gene71936:CDS | 45.0% | |
| GCATCAGAACTCGCAAACTA+TGG | - | chr8.3:20082185-20082204 | MS.gene71936:CDS | 45.0% | |
| GCGAGACTAACATCGAAGAT+TGG | - | chr8.3:20084180-20084199 | MS.gene71936:CDS | 45.0% | |
| GCTAATTCCATGCCTTCTCT+TGG | - | chr8.3:20082358-20082377 | MS.gene71936:CDS | 45.0% | |
| GCTTTGCTAGCTGATCATGA+CGG | + | chr8.3:20082306-20082325 | None:intergenic | 45.0% | |
| GGAAGTGACCAACTATATGG+AGG | + | chr8.3:20083510-20083529 | None:intergenic | 45.0% | |
| GGAGGAGAATGACATTTGCA+TGG | - | chr8.3:20084256-20084275 | MS.gene71936:CDS | 45.0% | |
| GGTGTCCAAATGTGAGGAAA+AGG | - | chr8.3:20082962-20082981 | MS.gene71936:CDS | 45.0% | |
| GTGAGGAAAAGGAGTAGCAA+GGG | - | chr8.3:20082973-20082992 | MS.gene71936:CDS | 45.0% | |
| TAACCGGTGGTTTAGGAAGT+TGG | - | chr8.3:20083071-20083090 | MS.gene71936:CDS | 45.0% | |
| TATTCTGCATCTCGAAGGTG+AGG | - | chr8.3:20083299-20083318 | MS.gene71936:CDS | 45.0% | |
| TGTGAGGAAAAGGAGTAGCA+AGG | - | chr8.3:20082972-20082991 | MS.gene71936:CDS | 45.0% | |
| TTCTGTGTGACACCAAGAGA+AGG | + | chr8.3:20082373-20082392 | None:intergenic | 45.0% | |
| TTTCGATTTACCCTATGCGG+TGG | - | chr8.3:20083178-20083197 | MS.gene71936:CDS | 45.0% | |
| ! | ACAGATTCGGGTTTAGGAAC+AGG | - | chr8.3:20083252-20083271 | MS.gene71936:CDS | 45.0% |
| ! | TAGTGCTATTGAAGAGAGGG+AGG | - | chr8.3:20084064-20084083 | MS.gene71936:CDS | 45.0% |
| ! | TGGATGATGGCTCATACTAG+CGG | - | chr8.3:20082697-20082716 | MS.gene71936:CDS | 45.0% |
| !! | CTATTGCTCCTGCTTTTAGG+TGG | - | chr8.3:20082920-20082939 | MS.gene71936:CDS | 45.0% |
| AATCCCAAGATCCACCGCAT+AGG | + | chr8.3:20083192-20083211 | None:intergenic | 50.0% | |
| ATCCCAAGATCCACCGCATA+GGG | + | chr8.3:20083191-20083210 | None:intergenic | 50.0% | |
| GAGCCAACTTCCTAAACCAC+CGG | + | chr8.3:20083077-20083096 | None:intergenic | 50.0% | |
| GCAGAAGGCAGGACCTAAAA+CGG | - | chr8.3:20083274-20083293 | MS.gene71936:CDS | 50.0% | |
| GCAGCAAACCACCTAAAAGC+AGG | + | chr8.3:20082931-20082950 | None:intergenic | 50.0% | |
| GCATGGCTCCTCCTAAATTG+AGG | - | chr8.3:20084273-20084292 | MS.gene71936:CDS | 50.0% | |
| GGAGGTTCTACACCATGCAA+AGG | + | chr8.3:20083492-20083511 | None:intergenic | 50.0% | |
| TACCCTATGCGGTGGATCTT+GGG | - | chr8.3:20083186-20083205 | MS.gene71936:CDS | 50.0% | |
| TCGCGGCAACAATCCACTTT+AGG | + | chr8.3:20084164-20084183 | None:intergenic | 50.0% | |
| TCTCGAAGGTGAGGAAGAGT+TGG | - | chr8.3:20083308-20083327 | MS.gene71936:CDS | 50.0% | |
| TGATCATGACGGTGAGGCAT+AGG | + | chr8.3:20082295-20082314 | None:intergenic | 50.0% | |
| TGGCATGGAGCTGATCTCTA+TGG | - | chr8.3:20083699-20083718 | MS.gene71936:CDS | 50.0% | |
| TGTGACACCAAGAGAAGGCA+TGG | + | chr8.3:20082368-20082387 | None:intergenic | 50.0% | |
| TTACCCTATGCGGTGGATCT+TGG | - | chr8.3:20083185-20083204 | MS.gene71936:CDS | 50.0% | |
| TTTAGGAACAGGCAGAAGGC+AGG | - | chr8.3:20083263-20083282 | MS.gene71936:CDS | 50.0% | |
| ! | AGGTGAGGAAGAGTTGGTTG+AGG | - | chr8.3:20083314-20083333 | MS.gene71936:CDS | 50.0% |
| ! | GGATTGGTAACCGGTGGTTT+AGG | - | chr8.3:20083064-20083083 | MS.gene71936:CDS | 50.0% |
| !!! | GTTTTCGGATTGGTAACCGG+TGG | - | chr8.3:20083058-20083077 | MS.gene71936:CDS | 50.0% |
| CAAGTTGCTGCTGTTGGCGT+TGG | - | chr8.3:20082895-20082914 | MS.gene71936:CDS | 55.0% | |
| CGGGTTTAGGAACAGGCAGA+AGG | - | chr8.3:20083259-20083278 | MS.gene71936:CDS | 55.0% | |
| GCTAGCTGATCATGACGGTG+AGG | + | chr8.3:20082301-20082320 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 20082043 | 20084319 | 20082043 | ID=MS.gene71936 |
| chr8.3 | mRNA | 20082043 | 20084319 | 20082043 | ID=MS.gene71936.t1;Parent=MS.gene71936 |
| chr8.3 | exon | 20082043 | 20084319 | 20082043 | ID=MS.gene71936.t1.exon1;Parent=MS.gene71936.t1 |
| chr8.3 | CDS | 20082043 | 20084319 | 20082043 | ID=cds.MS.gene71936.t1;Parent=MS.gene71936.t1 |
| Gene Sequence |
| Protein sequence |
