Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72282.t1 | XP_003608787.1 | 98.9 | 441 | 5 | 0 | 1 | 441 | 1 | 441 | 3.60E-248 | 867.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72282.t1 | Q9LNA5 | 68.6 | 436 | 133 | 2 | 8 | 441 | 8 | 441 | 8.5e-166 | 584.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72282.t1 | G7JK72 | 98.9 | 441 | 5 | 0 | 1 | 441 | 1 | 441 | 2.6e-248 | 867.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053536 | MS.gene72282 | 0.816622 | 5.03E-52 | -1.69E-46 |
| MS.gene053538 | MS.gene72282 | 0.805013 | 1.64E-49 | -1.69E-46 |
| MS.gene059778 | MS.gene72282 | 0.826335 | 2.87E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72282.t1 | MTR_4g101950 | 98.866 | 441 | 5 | 0 | 1 | 441 | 1 | 441 | 0.0 | 909 |
| MS.gene72282.t1 | MTR_5g011580 | 76.644 | 441 | 103 | 0 | 1 | 441 | 1 | 441 | 0.0 | 717 |
| MS.gene72282.t1 | MTR_5g047260 | 52.036 | 442 | 195 | 5 | 8 | 441 | 19 | 451 | 4.35e-151 | 437 |
| MS.gene72282.t1 | MTR_7g022470 | 50.109 | 459 | 198 | 6 | 3 | 441 | 4 | 451 | 1.41e-150 | 435 |
| MS.gene72282.t1 | MTR_7g028050 | 49.330 | 448 | 205 | 5 | 8 | 441 | 3 | 442 | 3.15e-146 | 424 |
| MS.gene72282.t1 | MTR_3g088885 | 47.439 | 449 | 209 | 9 | 3 | 431 | 6 | 447 | 2.50e-132 | 389 |
| MS.gene72282.t1 | MTR_1g029520 | 46.829 | 410 | 178 | 7 | 22 | 399 | 254 | 655 | 8.86e-122 | 370 |
| MS.gene72282.t1 | MTR_5g047260 | 53.614 | 332 | 146 | 3 | 8 | 331 | 19 | 350 | 1.54e-118 | 350 |
| MS.gene72282.t1 | MTR_5g015170 | 41.627 | 418 | 207 | 6 | 9 | 391 | 12 | 427 | 8.00e-105 | 320 |
| MS.gene72282.t1 | MTR_5g047260 | 53.265 | 291 | 128 | 3 | 8 | 290 | 19 | 309 | 4.53e-100 | 301 |
| MS.gene72282.t1 | MTR_7g028050 | 48.204 | 334 | 159 | 4 | 114 | 441 | 14 | 339 | 1.18e-99 | 301 |
| MS.gene72282.t1 | MTR_4g097380 | 39.618 | 419 | 226 | 5 | 9 | 400 | 31 | 449 | 5.49e-98 | 302 |
| MS.gene72282.t1 | MTR_1g012740 | 31.538 | 130 | 82 | 2 | 234 | 362 | 30 | 153 | 3.71e-15 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72282.t1 | AT1G12420 | 68.578 | 436 | 133 | 2 | 8 | 441 | 8 | 441 | 0.0 | 604 |
| MS.gene72282.t1 | AT4G22780 | 62.306 | 451 | 154 | 7 | 1 | 439 | 1 | 447 | 0.0 | 554 |
| MS.gene72282.t1 | AT4G22780 | 62.306 | 451 | 154 | 7 | 1 | 439 | 1 | 447 | 0.0 | 554 |
| MS.gene72282.t1 | AT1G12420 | 66.846 | 371 | 119 | 2 | 73 | 441 | 1 | 369 | 7.25e-177 | 499 |
| MS.gene72282.t1 | AT1G69040 | 50.559 | 447 | 204 | 5 | 8 | 441 | 13 | 455 | 7.17e-154 | 444 |
| MS.gene72282.t1 | AT1G69040 | 50.559 | 447 | 204 | 5 | 8 | 441 | 9 | 451 | 9.37e-154 | 444 |
| MS.gene72282.t1 | AT2G03730 | 49.558 | 452 | 200 | 7 | 8 | 439 | 13 | 456 | 8.61e-143 | 416 |
| MS.gene72282.t1 | AT2G03730 | 49.558 | 452 | 200 | 7 | 8 | 439 | 13 | 456 | 8.61e-143 | 416 |
| MS.gene72282.t1 | AT3G01990 | 51.263 | 396 | 177 | 3 | 8 | 391 | 18 | 409 | 1.59e-137 | 402 |
| MS.gene72282.t1 | AT3G01990 | 51.263 | 396 | 177 | 3 | 8 | 391 | 18 | 409 | 1.59e-137 | 402 |
| MS.gene72282.t1 | AT3G01990 | 51.263 | 396 | 177 | 3 | 8 | 391 | 4 | 395 | 1.72e-137 | 401 |
| MS.gene72282.t1 | AT3G01990 | 51.263 | 396 | 177 | 3 | 8 | 391 | 18 | 409 | 1.87e-137 | 402 |
| MS.gene72282.t1 | AT3G01990 | 51.263 | 396 | 177 | 3 | 8 | 391 | 4 | 395 | 2.24e-137 | 401 |
| MS.gene72282.t1 | AT3G01990 | 51.263 | 396 | 177 | 3 | 8 | 391 | 4 | 395 | 2.24e-137 | 401 |
| MS.gene72282.t1 | AT1G76990 | 47.586 | 435 | 205 | 6 | 3 | 418 | 6 | 436 | 2.15e-133 | 392 |
| MS.gene72282.t1 | AT1G76990 | 47.586 | 435 | 205 | 6 | 3 | 418 | 6 | 436 | 2.15e-133 | 392 |
| MS.gene72282.t1 | AT1G76990 | 47.586 | 435 | 205 | 6 | 3 | 418 | 6 | 436 | 2.15e-133 | 392 |
| MS.gene72282.t1 | AT1G76990 | 47.586 | 435 | 205 | 6 | 3 | 418 | 6 | 436 | 2.15e-133 | 392 |
| MS.gene72282.t1 | AT1G76990 | 47.586 | 435 | 205 | 6 | 3 | 418 | 6 | 436 | 2.15e-133 | 392 |
| MS.gene72282.t1 | AT5G25320 | 40.632 | 443 | 214 | 6 | 3 | 396 | 6 | 448 | 3.22e-113 | 342 |
| MS.gene72282.t1 | AT3G01990 | 50.453 | 331 | 148 | 3 | 8 | 326 | 4 | 330 | 1.99e-108 | 324 |
| MS.gene72282.t1 | AT3G01990 | 50.453 | 331 | 148 | 3 | 8 | 326 | 18 | 344 | 2.05e-108 | 324 |
| MS.gene72282.t1 | AT5G25320 | 41.320 | 409 | 193 | 5 | 35 | 396 | 1 | 409 | 2.91e-108 | 328 |
| MS.gene72282.t1 | AT3G01990 | 50.920 | 326 | 144 | 3 | 8 | 321 | 18 | 339 | 3.44e-108 | 323 |
| MS.gene72282.t1 | AT5G65890 | 40.385 | 416 | 211 | 6 | 9 | 389 | 13 | 426 | 9.27e-101 | 309 |
| MS.gene72282.t1 | AT5G65890 | 40.385 | 416 | 211 | 6 | 9 | 389 | 13 | 426 | 9.27e-101 | 309 |
| MS.gene72282.t1 | AT3G01990 | 48.621 | 290 | 133 | 3 | 8 | 285 | 18 | 303 | 3.00e-87 | 269 |
| MS.gene72282.t1 | AT5G65890 | 39.467 | 375 | 190 | 6 | 50 | 389 | 2 | 374 | 3.15e-87 | 273 |
| MS.gene72282.t1 | AT5G65890 | 39.467 | 375 | 190 | 6 | 50 | 389 | 2 | 374 | 3.15e-87 | 273 |
| MS.gene72282.t1 | AT3G01990 | 48.621 | 290 | 133 | 3 | 8 | 285 | 4 | 289 | 3.97e-87 | 268 |
| MS.gene72282.t1 | AT5G25320 | 39.402 | 368 | 174 | 6 | 3 | 321 | 6 | 373 | 4.82e-87 | 270 |
| MS.gene72282.t1 | AT5G65890 | 37.500 | 296 | 163 | 4 | 114 | 389 | 19 | 312 | 1.02e-62 | 207 |
| MS.gene72282.t1 | AT2G39570 | 24.126 | 286 | 197 | 10 | 28 | 298 | 16 | 296 | 2.57e-11 | 65.5 |
Find 92 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAAGAATTCCATGCTTTC+TGG | 0.070129 | 8.1:+21786052 | None:intergenic |
| CATATGCTTTCTTAATAAAA+AGG | 0.188552 | 8.1:+21786000 | None:intergenic |
| TCAGAACTAAACTTGAAAAT+TGG | 0.205980 | 8.1:+21785336 | None:intergenic |
| GAGAAGGAATCTGTACAATT+TGG | 0.211853 | 8.1:-21784520 | MS.gene72282:CDS |
| ATTTGGTGGAGCCTTCTTTC+AGG | 0.258400 | 8.1:+21785390 | None:intergenic |
| TTCTGAGGTGTTTGCTGTAT+TGG | 0.260105 | 8.1:-21785622 | MS.gene72282:CDS |
| CAGAAAGCATGGAATTCTTT+TGG | 0.281447 | 8.1:-21786051 | MS.gene72282:CDS |
| TACCTTGACTATAGTTGAAT+TGG | 0.284936 | 8.1:+21786177 | None:intergenic |
| TTTCATGTTACCGATCAAAA+TGG | 0.291087 | 8.1:-21785864 | MS.gene72282:CDS |
| CGCTCCGGTTCTGAACTAAT+TGG | 0.301964 | 8.1:+21785016 | None:intergenic |
| GCTCCGGTTCTGAACTAATT+GGG | 0.318294 | 8.1:+21785017 | None:intergenic |
| AGAAGGAATCTGTACAATTT+GGG | 0.351653 | 8.1:-21784519 | MS.gene72282:CDS |
| CGGTAGTGACTGTACAGAAT+TGG | 0.353447 | 8.1:-21785308 | MS.gene72282:CDS |
| TACAAGGAGATAGTGATATT+AGG | 0.356042 | 8.1:-21785449 | MS.gene72282:CDS |
| TTTCTCGAATGTAGGGTGTT+AGG | 0.364741 | 8.1:-21784851 | MS.gene72282:intron |
| TATGTTAAAGACAGCATCTC+TGG | 0.364796 | 8.1:-21785531 | MS.gene72282:CDS |
| GCTGTCTTTAACATAAATTA+AGG | 0.381361 | 8.1:+21785539 | None:intergenic |
| AGGATTCTCAGAAAATTAAT+CGG | 0.384316 | 8.1:-21785497 | MS.gene72282:CDS |
| CACGGTCTGCAAACATCATT+TGG | 0.388010 | 8.1:+21785373 | None:intergenic |
| ATCTGATGGAAGATGGTTCA+TGG | 0.410749 | 8.1:-21785973 | MS.gene72282:CDS |
| GGGGCAGTGTTATTGTCTCT+TGG | 0.420031 | 8.1:-21784552 | MS.gene72282:CDS |
| CATAACTACGACCGGAGACT+TGG | 0.440479 | 8.1:-21784739 | MS.gene72282:CDS |
| GTTAAGCAATTTAAAAGTAA+AGG | 0.442529 | 8.1:-21784634 | MS.gene72282:CDS |
| TAGAAGCCCTTGTCTGTCTT+CGG | 0.448964 | 8.1:+21784815 | None:intergenic |
| TGTACAGAATTGGGCAGAAA+GGG | 0.454717 | 8.1:-21785298 | MS.gene72282:CDS |
| TCTCACTGCCTTGGAATTGA+AGG | 0.460594 | 8.1:-21785667 | MS.gene72282:CDS |
| AAAGCATATGTTTCATCTGA+TGG | 0.461288 | 8.1:-21785987 | MS.gene72282:CDS |
| GGTAGTGACTGTACAGAATT+GGG | 0.466583 | 8.1:-21785307 | MS.gene72282:CDS |
| CATAAATTAAGGAGGCTGTT+CGG | 0.469802 | 8.1:+21785550 | None:intergenic |
| TTACATTCAACCCGTTCTCT+CGG | 0.476911 | 8.1:+21784772 | None:intergenic |
| TATAGTTGAATTGGAACAAA+CGG | 0.479069 | 8.1:+21786186 | None:intergenic |
| TAGAAATGGTCTCACTGCCT+TGG | 0.483190 | 8.1:-21785676 | MS.gene72282:CDS |
| AACCCCAATTAGTTCAGAAC+CGG | 0.487755 | 8.1:-21785020 | MS.gene72282:CDS |
| GATCAATCAGTTGGAGTTGG+AGG | 0.489723 | 8.1:-21784573 | MS.gene72282:CDS |
| TTCTATGCAACAGATGCCAT+TGG | 0.489734 | 8.1:-21784705 | MS.gene72282:CDS |
| ATGTGGTGGAGGCTAAAGTA+TGG | 0.495423 | 8.1:-21785584 | MS.gene72282:CDS |
| TGAGAACATTCCGAGAGAAC+GGG | 0.497653 | 8.1:-21784782 | MS.gene72282:CDS |
| AACATTTGCAGCCAAGTCTC+CGG | 0.500842 | 8.1:+21784728 | None:intergenic |
| CTGTACAGAATTGGGCAGAA+AGG | 0.501383 | 8.1:-21785299 | MS.gene72282:CDS |
| TTGGTCAGCTGGGTATCCAA+TGG | 0.501529 | 8.1:+21784689 | None:intergenic |
| ATGTTTCATCTGATGGAAGA+TGG | 0.504319 | 8.1:-21785980 | MS.gene72282:CDS |
| TTCCAATTCAACTATAGTCA+AGG | 0.517688 | 8.1:-21786179 | MS.gene72282:intron |
| TGAATCACACGATGGCGCTC+CGG | 0.519655 | 8.1:+21785001 | None:intergenic |
| GAAGATCAATCAGTTGGAGT+TGG | 0.523868 | 8.1:-21784576 | MS.gene72282:CDS |
| TGTACAGATTCCTTCTCACT+AGG | 0.528667 | 8.1:+21784526 | None:intergenic |
| TTTGATAGTGCCAGAAAGCA+TGG | 0.529161 | 8.1:-21786062 | MS.gene72282:CDS |
| TCGCGTTGGTCTTCTTTCTG+AGG | 0.530642 | 8.1:-21785637 | MS.gene72282:CDS |
| CTCCGGTTCTGAACTAATTG+GGG | 0.530984 | 8.1:+21785018 | None:intergenic |
| TGTTGTTAATGTTCAGTGCA+AGG | 0.531806 | 8.1:-21785268 | MS.gene72282:CDS |
| ATGAGAACATTCCGAGAGAA+CGG | 0.537132 | 8.1:-21784783 | MS.gene72282:CDS |
| GAGAGGGAAGATCAATCAGT+TGG | 0.543799 | 8.1:-21784582 | MS.gene72282:CDS |
| CTGTTATACATCCTGAAAGA+AGG | 0.544238 | 8.1:-21785401 | MS.gene72282:CDS |
| GATGGAATGGTCTTCATGTA+CGG | 0.550387 | 8.1:-21786720 | MS.gene72282:CDS |
| ATCAATCAGTTGGAGTTGGA+GGG | 0.550430 | 8.1:-21784572 | MS.gene72282:CDS |
| ATCTGTGCCCTTCAATTCCA+AGG | 0.552997 | 8.1:+21785659 | None:intergenic |
| AAGGGTTGACCAAGCATACA+TGG | 0.554392 | 8.1:-21785166 | MS.gene72282:intron |
| CATCTCTGGGACATCTATTG+AGG | 0.555516 | 8.1:-21785517 | MS.gene72282:CDS |
| CAAGTTTAGTTCTGAAACGC+CGG | 0.562418 | 8.1:-21785328 | MS.gene72282:CDS |
| ATGTTAAAGACAGCATCTCT+GGG | 0.565140 | 8.1:-21785530 | MS.gene72282:CDS |
| CACCACATCACATTGCAGCT+CGG | 0.565793 | 8.1:+21785599 | None:intergenic |
| GCTACTAAGATAAGATGGAA+TGG | 0.566013 | 8.1:-21786733 | None:intergenic |
| AAGTAACTACCATGTATGCT+TGG | 0.571806 | 8.1:+21785157 | None:intergenic |
| CAATTCTGTACAGTCACTAC+CGG | 0.573952 | 8.1:+21785309 | None:intergenic |
| GTCTCCGGTCGTAGTTATGT+CGG | 0.579009 | 8.1:+21784743 | None:intergenic |
| ATGTATAACAGCATCAGAGA+TGG | 0.579130 | 8.1:+21785413 | None:intergenic |
| AAGTCATCAAAAGGTAGAGA+GGG | 0.580764 | 8.1:-21784598 | MS.gene72282:CDS |
| CAAGTCATCAAAAGGTAGAG+AGG | 0.580801 | 8.1:-21784599 | MS.gene72282:CDS |
| TCAATCAGTTGGAGTTGGAG+GGG | 0.591152 | 8.1:-21784571 | MS.gene72282:CDS |
| CTCTTGGAAGCCTAGTGAGA+AGG | 0.591708 | 8.1:-21784536 | MS.gene72282:CDS |
| GCTGCAATGTGATGTGGTGG+AGG | 0.598200 | 8.1:-21785595 | MS.gene72282:CDS |
| CTCACTGCCTTGGAATTGAA+GGG | 0.602145 | 8.1:-21785666 | MS.gene72282:CDS |
| GTCTTTAACATAAATTAAGG+AGG | 0.602985 | 8.1:+21785542 | None:intergenic |
| CGTGCCGACATAACTACGAC+CGG | 0.604421 | 8.1:-21784747 | MS.gene72282:CDS |
| CCCTTGTGTTGATAGTTGCA+TGG | 0.605571 | 8.1:+21785184 | None:intergenic |
| TCACTTAGTAGCATTTACAA+TGG | 0.611593 | 8.1:-21785711 | MS.gene72282:CDS |
| TCGGAATGTTCTCATTACCT+CGG | 0.619947 | 8.1:+21784791 | None:intergenic |
| GGTCTGCAAACATCATTTGG+TGG | 0.620069 | 8.1:+21785376 | None:intergenic |
| TTGGATTCATCTGATAATCA+CGG | 0.620667 | 8.1:+21785355 | None:intergenic |
| CTATGCACCGAAGACAGACA+AGG | 0.623692 | 8.1:-21784822 | MS.gene72282:CDS |
| TTGAAGGGCACAGATCGCGT+TGG | 0.633204 | 8.1:-21785651 | MS.gene72282:CDS |
| TGTGTGCAATTTAACAGACA+TGG | 0.633650 | 8.1:-21785220 | MS.gene72282:CDS |
| CGAGCTGCAATGTGATGTGG+TGG | 0.634692 | 8.1:-21785598 | MS.gene72282:CDS |
| CAGACAAGGGCTTCTAGCCG+AGG | 0.637281 | 8.1:-21784808 | MS.gene72282:CDS |
| GGCCGAGCTGCAATGTGATG+TGG | 0.638970 | 8.1:-21785601 | MS.gene72282:CDS |
| TCCATGCAACTATCAACACA+AGG | 0.643713 | 8.1:-21785185 | MS.gene72282:CDS |
| GTACAGAATTGGGCAGAAAG+GGG | 0.660005 | 8.1:-21785297 | MS.gene72282:CDS |
| GCAAGCATTGAATCACACGA+TGG | 0.664874 | 8.1:+21784993 | None:intergenic |
| GATGGAAGATGGTTCATGGA+TGG | 0.664920 | 8.1:-21785969 | MS.gene72282:intron |
| GCTAAAGTATGGACTCACAA+TGG | 0.689830 | 8.1:-21785573 | MS.gene72282:CDS |
| TATGCACCGAAGACAGACAA+GGG | 0.703882 | 8.1:-21784821 | MS.gene72282:CDS |
| AGTAGAGAGAAGATCATGCG+AGG | 0.712972 | 8.1:-21784963 | MS.gene72282:intron |
| CCATGCAACTATCAACACAA+GGG | 0.731496 | 8.1:-21785184 | MS.gene72282:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTGTTAAAAATAATTTTGT+CGG | + | chr8.1:21784952-21784971 | None:intergenic | 10.0% |
| !!! | GTAAAAATTATTTTTATTTC+AGG | - | chr8.1:21786148-21786167 | MS.gene72282:intron | 10.0% |
| !!! | TAATTTTTACATCATTAATT+AGG | + | chr8.1:21786138-21786157 | None:intergenic | 10.0% |
| !! | AAACAAAGAATTTAGATTTA+TGG | + | chr8.1:21785473-21785492 | None:intergenic | 15.0% |
| !! | AAATCAATTATAGAAAAAGT+TGG | + | chr8.1:21784926-21784945 | None:intergenic | 15.0% |
| !! | ACATTAAACAACAAAAAATT+AGG | + | chr8.1:21785326-21785345 | None:intergenic | 15.0% |
| !! | AGAAAATTCCTTAATTAATT+TGG | - | chr8.1:21785071-21785090 | MS.gene72282:intron | 15.0% |
| !! | ATCTTAATATATTCATATCA+CGG | + | chr8.1:21786331-21786350 | None:intergenic | 15.0% |
| !! | CATTAAACAACAAAAAATTA+GGG | + | chr8.1:21785325-21785344 | None:intergenic | 15.0% |
| !! | GAAAATTCCTTAATTAATTT+GGG | - | chr8.1:21785072-21785091 | MS.gene72282:intron | 15.0% |
| !!! | ATTTGCATTTAACTTTTTTA+TGG | - | chr8.1:21784635-21784654 | MS.gene72282:CDS | 15.0% |
| !!! | TAATGCAATGTTTTTTTTTT+TGG | - | chr8.1:21786094-21786113 | MS.gene72282:intron | 15.0% |
| !! | AAACCAGATATTAATTTCAA+GGG | - | chr8.1:21784730-21784749 | MS.gene72282:CDS | 20.0% |
| !! | ATTATTAATTTCTCGAATGT+AGG | - | chr8.1:21786357-21786376 | MS.gene72282:intron | 20.0% |
| !! | ATTCAGAAAAATTTGATTGA+AGG | + | chr8.1:21784682-21784701 | None:intergenic | 20.0% |
| !! | CATATGCTTTCTTAATAAAA+AGG | + | chr8.1:21785219-21785238 | None:intergenic | 20.0% |
| !! | GTTAAGCAATTTAAAAGTAA+AGG | - | chr8.1:21786582-21786601 | MS.gene72282:intron | 20.0% |
| !! | TTATTAATTTCTCGAATGTA+GGG | - | chr8.1:21786358-21786377 | MS.gene72282:intron | 20.0% |
| !!! | AATTTTTCAATCTTGTTCAT+TGG | - | chr8.1:21785276-21785295 | MS.gene72282:CDS | 20.0% |
| !!! | CGTTTTAAAATATATTGAAC+AGG | - | chr8.1:21785396-21785415 | MS.gene72282:CDS | 20.0% |
| ! | AAACATTGAAAAGAGAAAGA+AGG | + | chr8.1:21784573-21784592 | None:intergenic | 25.0% |
| ! | AAACCCTTGAAATTAATATC+TGG | + | chr8.1:21784736-21784755 | None:intergenic | 25.0% |
| ! | AAGTTAAATGCAAATGAATC+AGG | + | chr8.1:21784630-21784649 | None:intergenic | 25.0% |
| ! | AATCAGTTCGTCAAAAAATT+GGG | - | chr8.1:21786560-21786579 | MS.gene72282:intron | 25.0% |
| ! | AGGATTCTCAGAAAATTAAT+CGG | - | chr8.1:21785719-21785738 | MS.gene72282:intron | 25.0% |
| ! | ATATATTGAACAGGTACTAA+TGG | - | chr8.1:21785405-21785424 | MS.gene72282:CDS | 25.0% |
| ! | GAAACCAGATATTAATTTCA+AGG | - | chr8.1:21784729-21784748 | MS.gene72282:CDS | 25.0% |
| ! | GCTGTCTTTAACATAAATTA+AGG | + | chr8.1:21785680-21785699 | None:intergenic | 25.0% |
| ! | GGAAAAACAAATCATAGAAA+TGG | - | chr8.1:21785526-21785545 | MS.gene72282:CDS | 25.0% |
| ! | GTCTTTAACATAAATTAAGG+AGG | + | chr8.1:21785677-21785696 | None:intergenic | 25.0% |
| ! | GTGTAAACCCAAATTAATTA+AGG | + | chr8.1:21785082-21785101 | None:intergenic | 25.0% |
| ! | TATAGTTGAATTGGAACAAA+CGG | + | chr8.1:21785033-21785052 | None:intergenic | 25.0% |
| ! | TCAATTATAGAAAAAGTTGG+TGG | + | chr8.1:21784923-21784942 | None:intergenic | 25.0% |
| ! | TCAGAACTAAACTTGAAAAT+TGG | + | chr8.1:21785883-21785902 | None:intergenic | 25.0% |
| ! | TTTCGTGTTTGAAAAAAACA+GGG | - | chr8.1:21784992-21785011 | MS.gene72282:CDS | 25.0% |
| !! | AATATCTGGTTTCAAAACTA+AGG | + | chr8.1:21784722-21784741 | None:intergenic | 25.0% |
| !! | ATATCTGGTTTCAAAACTAA+GGG | + | chr8.1:21784721-21784740 | None:intergenic | 25.0% |
| !! | TTTTACATTAGACATAAGGA+TGG | - | chr8.1:21786173-21786192 | MS.gene72282:intron | 25.0% |
| !! | TTTTCGTGTTTGAAAAAAAC+AGG | - | chr8.1:21784991-21785010 | MS.gene72282:CDS | 25.0% |
| !!! | CGTTTAAGATATGTTTTACA+AGG | - | chr8.1:21785751-21785770 | MS.gene72282:intron | 25.0% |
| !!! | TAACTTGTTTCCATTTTGAT+CGG | + | chr8.1:21785365-21785384 | None:intergenic | 25.0% |
| AAAGCATATGTTTCATCTGA+TGG | - | chr8.1:21785229-21785248 | MS.gene72282:CDS | 30.0% | |
| AAGCAAAAAGAGGTTTGAAT+CGG | + | chr8.1:21784803-21784822 | None:intergenic | 30.0% | |
| AGAAGGAATCTGTACAATTT+GGG | - | chr8.1:21786697-21786716 | MS.gene72282:CDS | 30.0% | |
| GAATCAGTTCGTCAAAAAAT+TGG | - | chr8.1:21786559-21786578 | MS.gene72282:intron | 30.0% | |
| TACAAGGAGATAGTGATATT+AGG | - | chr8.1:21785767-21785786 | MS.gene72282:intron | 30.0% | |
| TACCTTGACTATAGTTGAAT+TGG | + | chr8.1:21785042-21785061 | None:intergenic | 30.0% | |
| TCACTTAGTAGCATTTACAA+TGG | - | chr8.1:21785505-21785524 | MS.gene72282:CDS | 30.0% | |
| TGATTGAAGGATGAAGAAAA+TGG | + | chr8.1:21784669-21784688 | None:intergenic | 30.0% | |
| TTCCAATTCAACTATAGTCA+AGG | - | chr8.1:21785037-21785056 | MS.gene72282:CDS | 30.0% | |
| TTCTCTTGAGATTTCTTCTA+AGG | - | chr8.1:21784775-21784794 | MS.gene72282:CDS | 30.0% | |
| TTGGATTCATCTGATAATCA+CGG | + | chr8.1:21785864-21785883 | None:intergenic | 30.0% | |
| TTTCATGTTACCGATCAAAA+TGG | - | chr8.1:21785352-21785371 | MS.gene72282:CDS | 30.0% | |
| ! | GGAGTTTTACATTAGACATA+AGG | - | chr8.1:21786169-21786188 | MS.gene72282:intron | 30.0% |
| !! | AGAAAAAGTTGGTGGAAATT+AGG | + | chr8.1:21784915-21784934 | None:intergenic | 30.0% |
| !!! | GAACTGATTCGATGATTTTT+TGG | + | chr8.1:21786549-21786568 | None:intergenic | 30.0% |
| AAGTAACTACCATGTATGCT+TGG | + | chr8.1:21786062-21786081 | None:intergenic | 35.0% | |
| AAGTCATCAAAAGGTAGAGA+GGG | - | chr8.1:21786618-21786637 | MS.gene72282:intron | 35.0% | |
| ATGTATAACAGCATCAGAGA+TGG | + | chr8.1:21785806-21785825 | None:intergenic | 35.0% | |
| ATGTTAAAGACAGCATCTCT+GGG | - | chr8.1:21785686-21785705 | MS.gene72282:CDS | 35.0% | |
| ATGTTTCATCTGATGGAAGA+TGG | - | chr8.1:21785236-21785255 | MS.gene72282:CDS | 35.0% | |
| CAAAAGAATTCCATGCTTTC+TGG | + | chr8.1:21785167-21785186 | None:intergenic | 35.0% | |
| CATAAATTAAGGAGGCTGTT+CGG | + | chr8.1:21785669-21785688 | None:intergenic | 35.0% | |
| CTGTTATACATCCTGAAAGA+AGG | - | chr8.1:21785815-21785834 | MS.gene72282:intron | 35.0% | |
| GAGAAGGAATCTGTACAATT+TGG | - | chr8.1:21786696-21786715 | MS.gene72282:CDS | 35.0% | |
| TATGTTAAAGACAGCATCTC+TGG | - | chr8.1:21785685-21785704 | MS.gene72282:CDS | 35.0% | |
| TGTGTGCAATTTAACAGACA+TGG | - | chr8.1:21785996-21786015 | MS.gene72282:CDS | 35.0% | |
| TGTTGTTAATGTTCAGTGCA+AGG | - | chr8.1:21785948-21785967 | MS.gene72282:intron | 35.0% | |
| !! | ACCTTTTGATGACTTGCAAA+AGG | + | chr8.1:21786613-21786632 | None:intergenic | 35.0% |
| !! | CAGAAAGCATGGAATTCTTT+TGG | - | chr8.1:21785165-21785184 | MS.gene72282:intron | 35.0% |
| AACCCCAATTAGTTCAGAAC+CGG | - | chr8.1:21786196-21786215 | MS.gene72282:CDS | 40.0% | |
| ATCAATCAGTTGGAGTTGGA+GGG | - | chr8.1:21786644-21786663 | MS.gene72282:intron | 40.0% | |
| ATCTGATGGAAGATGGTTCA+TGG | - | chr8.1:21785243-21785262 | MS.gene72282:CDS | 40.0% | |
| ATGAGAACATTCCGAGAGAA+CGG | - | chr8.1:21786433-21786452 | MS.gene72282:intron | 40.0% | |
| CAAGTCATCAAAAGGTAGAG+AGG | - | chr8.1:21786617-21786636 | MS.gene72282:intron | 40.0% | |
| CAATTCTGTACAGTCACTAC+CGG | + | chr8.1:21785910-21785929 | None:intergenic | 40.0% | |
| CCATGCAACTATCAACACAA+GGG | - | chr8.1:21786032-21786051 | MS.gene72282:CDS | 40.0% | |
| GAAGATCAATCAGTTGGAGT+TGG | - | chr8.1:21786640-21786659 | MS.gene72282:intron | 40.0% | |
| GCTAAAGTATGGACTCACAA+TGG | - | chr8.1:21785643-21785662 | MS.gene72282:CDS | 40.0% | |
| GGTAGTGACTGTACAGAATT+GGG | - | chr8.1:21785909-21785928 | MS.gene72282:intron | 40.0% | |
| GGTTTCAAAACTAAGGGATC+TGG | + | chr8.1:21784715-21784734 | None:intergenic | 40.0% | |
| TCCATGCAACTATCAACACA+AGG | - | chr8.1:21786031-21786050 | MS.gene72282:CDS | 40.0% | |
| TCGGAATGTTCTCATTACCT+CGG | + | chr8.1:21786428-21786447 | None:intergenic | 40.0% | |
| TGTACAGAATTGGGCAGAAA+GGG | - | chr8.1:21785918-21785937 | MS.gene72282:intron | 40.0% | |
| TGTACAGATTCCTTCTCACT+AGG | + | chr8.1:21786693-21786712 | None:intergenic | 40.0% | |
| TTACATTCAACCCGTTCTCT+CGG | + | chr8.1:21786447-21786466 | None:intergenic | 40.0% | |
| TTCTATGCAACAGATGCCAT+TGG | - | chr8.1:21786511-21786530 | MS.gene72282:intron | 40.0% | |
| ! | GCCTTTTGCAAGTCATCAAA+AGG | - | chr8.1:21786609-21786628 | MS.gene72282:intron | 40.0% |
| ! | TTTCTCGAATGTAGGGTGTT+AGG | - | chr8.1:21786365-21786384 | MS.gene72282:intron | 40.0% |
| !! | CAAGTTTAGTTCTGAAACGC+CGG | - | chr8.1:21785888-21785907 | MS.gene72282:intron | 40.0% |
| !! | TTCTGAGGTGTTTGCTGTAT+TGG | - | chr8.1:21785594-21785613 | MS.gene72282:CDS | 40.0% |
| !! | TTTGATAGTGCCAGAAAGCA+TGG | - | chr8.1:21785154-21785173 | MS.gene72282:intron | 40.0% |
| !!! | CGATGATTTTTTGGTCAGCT+GGG | + | chr8.1:21786540-21786559 | None:intergenic | 40.0% |
| !!! | TCGATGATTTTTTGGTCAGC+TGG | + | chr8.1:21786541-21786560 | None:intergenic | 40.0% |
| AACATTTGCAGCCAAGTCTC+CGG | + | chr8.1:21786491-21786510 | None:intergenic | 45.0% | |
| AAGAAGGAAGACACGAACCT+AGG | + | chr8.1:21784557-21784576 | None:intergenic | 45.0% | |
| AAGGGTTGACCAAGCATACA+TGG | - | chr8.1:21786050-21786069 | MS.gene72282:CDS | 45.0% | |
| AGAGAAGATCATGCGAGGTA+TGG | - | chr8.1:21786258-21786277 | MS.gene72282:intron | 45.0% | |
| AGTAGAGAGAAGATCATGCG+AGG | - | chr8.1:21786253-21786272 | MS.gene72282:intron | 45.0% | |
| ATCTGTGCCCTTCAATTCCA+AGG | + | chr8.1:21785560-21785579 | None:intergenic | 45.0% | |
| CACGGTCTGCAAACATCATT+TGG | + | chr8.1:21785846-21785865 | None:intergenic | 45.0% | |
| CGGTAGTGACTGTACAGAAT+TGG | - | chr8.1:21785908-21785927 | MS.gene72282:intron | 45.0% | |
| CTCACTGCCTTGGAATTGAA+GGG | - | chr8.1:21785550-21785569 | MS.gene72282:CDS | 45.0% | |
| CTGTACAGAATTGGGCAGAA+AGG | - | chr8.1:21785917-21785936 | MS.gene72282:intron | 45.0% | |
| GAGAGGGAAGATCAATCAGT+TGG | - | chr8.1:21786634-21786653 | MS.gene72282:intron | 45.0% | |
| GATCAATCAGTTGGAGTTGG+AGG | - | chr8.1:21786643-21786662 | MS.gene72282:intron | 45.0% | |
| GATGGAAGATGGTTCATGGA+TGG | - | chr8.1:21785247-21785266 | MS.gene72282:CDS | 45.0% | |
| GGTCTGCAAACATCATTTGG+TGG | + | chr8.1:21785843-21785862 | None:intergenic | 45.0% | |
| GTACAGAATTGGGCAGAAAG+GGG | - | chr8.1:21785919-21785938 | MS.gene72282:intron | 45.0% | |
| TAGAAATGGTCTCACTGCCT+TGG | - | chr8.1:21785540-21785559 | MS.gene72282:CDS | 45.0% | |
| TAGAAGCCCTTGTCTGTCTT+CGG | + | chr8.1:21786404-21786423 | None:intergenic | 45.0% | |
| TATGCACCGAAGACAGACAA+GGG | - | chr8.1:21786395-21786414 | MS.gene72282:intron | 45.0% | |
| TCAATCAGTTGGAGTTGGAG+GGG | - | chr8.1:21786645-21786664 | MS.gene72282:intron | 45.0% | |
| TCTCACTGCCTTGGAATTGA+AGG | - | chr8.1:21785549-21785568 | MS.gene72282:CDS | 45.0% | |
| TGAGAACATTCCGAGAGAAC+GGG | - | chr8.1:21786434-21786453 | MS.gene72282:intron | 45.0% | |
| TGAGGTACGCAAGCAAAAAG+AGG | + | chr8.1:21784813-21784832 | None:intergenic | 45.0% | |
| ! | ATGTGGTGGAGGCTAAAGTA+TGG | - | chr8.1:21785632-21785651 | MS.gene72282:CDS | 45.0% |
| ! | ATTTGGTGGAGCCTTCTTTC+AGG | + | chr8.1:21785829-21785848 | None:intergenic | 45.0% |
| ! | TTTTTCGCATGAGCACTCCT+AGG | - | chr8.1:21784537-21784556 | MS.gene72282:CDS | 45.0% |
| !! | CATCTCTGGGACATCTATTG+AGG | - | chr8.1:21785699-21785718 | MS.gene72282:CDS | 45.0% |
| !! | CCCTTGTGTTGATAGTTGCA+TGG | + | chr8.1:21786035-21786054 | None:intergenic | 45.0% |
| !! | CTCCGGTTCTGAACTAATTG+GGG | + | chr8.1:21786201-21786220 | None:intergenic | 45.0% |
| !! | GCAAGCATTGAATCACACGA+TGG | + | chr8.1:21786226-21786245 | None:intergenic | 45.0% |
| !! | GCTCCGGTTCTGAACTAATT+GGG | + | chr8.1:21786202-21786221 | None:intergenic | 45.0% |
| !! | TTTAAATTAATTAAAATTTG+AGG | + | chr8.1:21784831-21784850 | None:intergenic | 5.0% |
| CACCACATCACATTGCAGCT+CGG | + | chr8.1:21785620-21785639 | None:intergenic | 50.0% | |
| CATAACTACGACCGGAGACT+TGG | - | chr8.1:21786477-21786496 | MS.gene72282:intron | 50.0% | |
| CTATGCACCGAAGACAGACA+AGG | - | chr8.1:21786394-21786413 | MS.gene72282:intron | 50.0% | |
| CTCTTGGAAGCCTAGTGAGA+AGG | - | chr8.1:21786680-21786699 | MS.gene72282:CDS | 50.0% | |
| GTCTCCGGTCGTAGTTATGT+CGG | + | chr8.1:21786476-21786495 | None:intergenic | 50.0% | |
| TTGGTCAGCTGGGTATCCAA+TGG | + | chr8.1:21786530-21786549 | None:intergenic | 50.0% | |
| ! | GGGGCAGTGTTATTGTCTCT+TGG | - | chr8.1:21786664-21786683 | MS.gene72282:intron | 50.0% |
| !! | CGCTCCGGTTCTGAACTAAT+TGG | + | chr8.1:21786203-21786222 | None:intergenic | 50.0% |
| !! | TCGCGTTGGTCTTCTTTCTG+AGG | - | chr8.1:21785579-21785598 | MS.gene72282:CDS | 50.0% |
| CGAGCTGCAATGTGATGTGG+TGG | - | chr8.1:21785618-21785637 | MS.gene72282:CDS | 55.0% | |
| GCTGCAATGTGATGTGGTGG+AGG | - | chr8.1:21785621-21785640 | MS.gene72282:CDS | 55.0% | |
| TGAATCACACGATGGCGCTC+CGG | + | chr8.1:21786218-21786237 | None:intergenic | 55.0% | |
| ! | CGTGCCGACATAACTACGAC+CGG | - | chr8.1:21786469-21786488 | MS.gene72282:intron | 55.0% |
| ! | TTGAAGGGCACAGATCGCGT+TGG | - | chr8.1:21785565-21785584 | MS.gene72282:CDS | 55.0% |
| CAGACAAGGGCTTCTAGCCG+AGG | - | chr8.1:21786408-21786427 | MS.gene72282:intron | 60.0% | |
| GGCCGAGCTGCAATGTGATG+TGG | - | chr8.1:21785615-21785634 | MS.gene72282:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 21784497 | 21786741 | 21784497 | ID=MS.gene72282 |
| chr8.1 | mRNA | 21784497 | 21786741 | 21784497 | ID=MS.gene72282.t1;Parent=MS.gene72282 |
| chr8.1 | exon | 21786680 | 21786741 | 21786680 | ID=MS.gene72282.t1.exon1;Parent=MS.gene72282.t1 |
| chr8.1 | CDS | 21786680 | 21786741 | 21786680 | ID=cds.MS.gene72282.t1;Parent=MS.gene72282.t1 |
| chr8.1 | exon | 21786180 | 21786225 | 21786180 | ID=MS.gene72282.t1.exon2;Parent=MS.gene72282.t1 |
| chr8.1 | CDS | 21786180 | 21786225 | 21786180 | ID=cds.MS.gene72282.t1;Parent=MS.gene72282.t1 |
| chr8.1 | exon | 21785970 | 21786084 | 21785970 | ID=MS.gene72282.t1.exon3;Parent=MS.gene72282.t1 |
| chr8.1 | CDS | 21785970 | 21786084 | 21785970 | ID=cds.MS.gene72282.t1;Parent=MS.gene72282.t1 |
| chr8.1 | exon | 21785821 | 21785888 | 21785821 | ID=MS.gene72282.t1.exon4;Parent=MS.gene72282.t1 |
| chr8.1 | CDS | 21785821 | 21785888 | 21785821 | ID=cds.MS.gene72282.t1;Parent=MS.gene72282.t1 |
| chr8.1 | exon | 21785167 | 21785733 | 21785167 | ID=MS.gene72282.t1.exon5;Parent=MS.gene72282.t1 |
| chr8.1 | CDS | 21785167 | 21785733 | 21785167 | ID=cds.MS.gene72282.t1;Parent=MS.gene72282.t1 |
| chr8.1 | exon | 21784964 | 21785068 | 21784964 | ID=MS.gene72282.t1.exon6;Parent=MS.gene72282.t1 |
| chr8.1 | CDS | 21784964 | 21785068 | 21784964 | ID=cds.MS.gene72282.t1;Parent=MS.gene72282.t1 |
| chr8.1 | exon | 21784497 | 21784859 | 21784497 | ID=MS.gene72282.t1.exon7;Parent=MS.gene72282.t1 |
| chr8.1 | CDS | 21784497 | 21784859 | 21784497 | ID=cds.MS.gene72282.t1;Parent=MS.gene72282.t1 |
| Gene Sequence |
| Protein sequence |
