Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72852.t1 | XP_003612634.1 | 97.8 | 278 | 6 | 0 | 1 | 278 | 1 | 278 | 2.50E-154 | 554.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72852.t1 | Q3T130 | 28.9 | 211 | 133 | 5 | 1 | 206 | 1 | 199 | 1.5e-14 | 81.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72852.t1 | G7K852 | 97.8 | 278 | 6 | 0 | 1 | 278 | 1 | 278 | 1.8e-154 | 554.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055150 | MS.gene72852 | 0.823901 | 1.08E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72852.t1 | MTR_5g027180 | 97.842 | 278 | 6 | 0 | 1 | 278 | 1 | 278 | 0.0 | 560 |
| MS.gene72852.t1 | MTR_8g071150 | 72.727 | 264 | 72 | 0 | 1 | 264 | 1 | 264 | 9.65e-147 | 412 |
| MS.gene72852.t1 | MTR_8g071140 | 63.745 | 251 | 91 | 0 | 14 | 264 | 111 | 361 | 2.51e-118 | 343 |
| MS.gene72852.t1 | MTR_4g068340 | 29.845 | 258 | 163 | 4 | 1 | 247 | 1 | 251 | 3.56e-32 | 120 |
| MS.gene72852.t1 | MTR_2g021690 | 26.740 | 273 | 188 | 5 | 1 | 266 | 1 | 268 | 9.36e-32 | 120 |
| MS.gene72852.t1 | MTR_1g112160 | 29.612 | 206 | 133 | 5 | 83 | 276 | 27 | 232 | 1.85e-23 | 96.3 |
| MS.gene72852.t1 | MTR_1g112150 | 26.460 | 291 | 192 | 7 | 1 | 278 | 1 | 282 | 1.45e-22 | 94.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72852.t1 | AT1G32127 | 74.621 | 264 | 67 | 0 | 1 | 264 | 1 | 264 | 1.74e-146 | 411 |
| MS.gene72852.t1 | AT1G32127 | 74.621 | 264 | 67 | 0 | 1 | 264 | 1 | 264 | 1.74e-146 | 411 |
| MS.gene72852.t1 | AT1G55240 | 32.302 | 291 | 180 | 7 | 1 | 278 | 1 | 287 | 9.34e-46 | 156 |
| MS.gene72852.t1 | AT1G55230 | 28.322 | 286 | 192 | 6 | 1 | 277 | 1 | 282 | 4.82e-40 | 141 |
| MS.gene72852.t1 | AT5G19870 | 29.643 | 280 | 181 | 9 | 1 | 270 | 1 | 274 | 1.66e-34 | 126 |
| MS.gene72852.t1 | AT1G49470 | 32.584 | 267 | 154 | 7 | 1 | 251 | 1 | 257 | 1.99e-32 | 121 |
Find 63 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGTTGGGGTGTGGCATATT+TGG | 0.191911 | 5.1:-17693727 | MS.gene72852:CDS |
| CTTCTTATGTTCTTTATCTA+TGG | 0.197883 | 5.1:-17693479 | MS.gene72852:CDS |
| TCCTAAGACGTTTCGTGTTC+GGG | 0.241693 | 5.1:-17693678 | MS.gene72852:CDS |
| TAATGATTTGCATACAATTC+AGG | 0.249628 | 5.1:-17691342 | MS.gene72852:CDS |
| ATAAAATGCATAGTCCTATT+TGG | 0.267816 | 5.1:+17691657 | None:intergenic |
| ATCCTAAGACGTTTCGTGTT+CGG | 0.282054 | 5.1:-17693679 | MS.gene72852:CDS |
| ACCAGATGGTTGCAAGATTA+AGG | 0.289473 | 5.1:-17691513 | MS.gene72852:CDS |
| TTCAGTTGACAGTGAAATTC+GGG | 0.304489 | 5.1:-17691471 | MS.gene72852:CDS |
| AGTTGGGGTGTGGCATATTT+GGG | 0.310805 | 5.1:-17693726 | MS.gene72852:CDS |
| TTGCAACCATCTGGTATCAT+AGG | 0.312702 | 5.1:+17691521 | None:intergenic |
| TTTCAAGGGTCATGCTTTGC+CGG | 0.328389 | 5.1:-17693765 | MS.gene72852:CDS |
| ACCCTCCTCGTCTTCCAAAT+AGG | 0.366655 | 5.1:-17691671 | MS.gene72852:CDS |
| AAATCGGCTGGAAAGTTGTT+TGG | 0.368226 | 5.1:+17691611 | None:intergenic |
| ATTCAGTTGACAGTGAAATT+CGG | 0.369470 | 5.1:-17691472 | MS.gene72852:CDS |
| GAGCTCTATGTTGTTGCAAT+TGG | 0.374652 | 5.1:-17693611 | MS.gene72852:CDS |
| CTTTAGCGCTGCAAGGCATA+TGG | 0.378119 | 5.1:-17691574 | MS.gene72852:CDS |
| TGATGGGAGGCTAAAGTACT+TGG | 0.381774 | 5.1:-17693633 | MS.gene72852:CDS |
| TCCTTAATCTTGCAACCATC+TGG | 0.387259 | 5.1:+17691512 | None:intergenic |
| AGCGATGCCGTTGCATAAAT+CGG | 0.390715 | 5.1:+17691595 | None:intergenic |
| GCCCGAACACGAAACGTCTT+AGG | 0.393772 | 5.1:+17693677 | None:intergenic |
| TTTCATTCAACATCACATAA+AGG | 0.423117 | 5.1:-17691713 | MS.gene72852:CDS |
| GCCATCCTTGCGGTTCTTGT+TGG | 0.432786 | 5.1:-17691416 | MS.gene72852:CDS |
| TTCAAGGGTCATGCTTTGCC+GGG | 0.438314 | 5.1:-17693764 | MS.gene72852:CDS |
| CTGGAAAGTTGTTTGGAAGA+AGG | 0.447000 | 5.1:+17691618 | None:intergenic |
| AGACGTTTCGTGTTCGGGCG+TGG | 0.450045 | 5.1:-17693673 | MS.gene72852:CDS |
| ACTCACCTCAAGATAATTGT+TGG | 0.475350 | 5.1:-17693551 | MS.gene72852:CDS |
| TGGAAAGTTGTTTGGAAGAA+GGG | 0.490039 | 5.1:+17691619 | None:intergenic |
| TCGGGCGTGGAATCCTGTAC+CGG | 0.495794 | 5.1:-17693660 | MS.gene72852:CDS |
| CGGAAAATGCCATGGCAGCT+AGG | 0.498795 | 5.1:+17691756 | None:intergenic |
| ATGAATGACTTTGAGCACTC+GGG | 0.516066 | 5.1:-17693506 | MS.gene72852:CDS |
| ATGCCGTTGCATAAATCGGC+TGG | 0.516097 | 5.1:+17691599 | None:intergenic |
| CTCCCATCAAAACCCGGTAC+AGG | 0.520728 | 5.1:+17693647 | None:intergenic |
| CATAAAATACCTTGTTGCAA+TGG | 0.527231 | 5.1:+17691782 | None:intergenic |
| TTTATGTTTCCTAGCTGCCA+TGG | 0.533188 | 5.1:-17691765 | MS.gene72852:CDS |
| CGGGCGTGGAATCCTGTACC+GGG | 0.545371 | 5.1:-17693659 | MS.gene72852:CDS |
| GTTGTTTGGAAGAAGGGCTC+CGG | 0.548724 | 5.1:+17691625 | None:intergenic |
| TATGAATGACTTTGAGCACT+CGG | 0.553153 | 5.1:-17693507 | MS.gene72852:CDS |
| TTTGGAAGACGAGGAGGGTG+TGG | 0.553435 | 5.1:+17691675 | None:intergenic |
| TGCAACCATCTGGTATCATA+GGG | 0.554097 | 5.1:+17691522 | None:intergenic |
| TTTCCAGCCGATTTATGCAA+CGG | 0.568372 | 5.1:-17691602 | MS.gene72852:CDS |
| GATTTGCATACAATTCAGGA+TGG | 0.570638 | 5.1:-17691338 | MS.gene72852:CDS |
| TTTATGTGATGTTGAATGAA+AGG | 0.575760 | 5.1:+17691715 | None:intergenic |
| TCAAAGTCATTCATATGAGA+AGG | 0.583114 | 5.1:+17693515 | None:intergenic |
| CACCTCAAGATAATTGTTGG+CGG | 0.584172 | 5.1:-17693548 | MS.gene72852:CDS |
| ACCAACAAGAACCGCAAGGA+TGG | 0.593139 | 5.1:+17691415 | None:intergenic |
| TATGGCCCTATGATACCAGA+TGG | 0.593823 | 5.1:-17691527 | MS.gene72852:CDS |
| AACATCACATAAAGGTCTCG+AGG | 0.601372 | 5.1:-17691705 | MS.gene72852:CDS |
| GGCATCGCTTTAGCGCTGCA+AGG | 0.601674 | 5.1:-17691581 | MS.gene72852:CDS |
| GCTCTTTGTTGCCATCCTTG+CGG | 0.603564 | 5.1:-17691426 | MS.gene72852:CDS |
| AAAGGAGAATAGAAGATACT+CGG | 0.605972 | 5.1:+17691733 | None:intergenic |
| TCAAGGGTCATGCTTTGCCG+GGG | 0.619566 | 5.1:-17693763 | MS.gene72852:CDS |
| GTCCTATTTGGAAGACGAGG+AGG | 0.619764 | 5.1:+17691669 | None:intergenic |
| TCCTATTTGGAAGACGAGGA+GGG | 0.627926 | 5.1:+17691670 | None:intergenic |
| CACCGCCAACAATTATCTTG+AGG | 0.634102 | 5.1:+17693546 | None:intergenic |
| AGATTTCTTCCATTGCAACA+AGG | 0.635937 | 5.1:-17691791 | MS.gene72852:CDS |
| ACATCACATAAAGGTCTCGA+GGG | 0.649189 | 5.1:-17691704 | MS.gene72852:CDS |
| TGAATGACTTTGAGCACTCG+GGG | 0.653649 | 5.1:-17693505 | MS.gene72852:CDS |
| TTTAGCCTCCCATCAAAACC+CGG | 0.654952 | 5.1:+17693641 | None:intergenic |
| ATACTCGGCGGAAAATGCCA+TGG | 0.666532 | 5.1:+17691748 | None:intergenic |
| CAGTACCAACAAGAACCGCA+AGG | 0.703197 | 5.1:+17691411 | None:intergenic |
| TCAGTTGACAGTGAAATTCG+GGG | 0.709567 | 5.1:-17691470 | MS.gene72852:CDS |
| ATAGTCCTATTTGGAAGACG+AGG | 0.716043 | 5.1:+17691666 | None:intergenic |
| GGAGAATAGAAGATACTCGG+CGG | 0.725727 | 5.1:+17691736 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTAATTTATTCTATTTAAAC+AGG | + | chr5.1:17691743-17691762 | None:intergenic | 15.0% |
| !! | CTGTTTAAATAGAATAAATT+AGG | - | chr5.1:17691741-17691760 | MS.gene72852:CDS | 15.0% |
| !! | TTGTCTTATGATTATAAAAA+GGG | + | chr5.1:17692234-17692253 | None:intergenic | 15.0% |
| !! | TTTGTCTTATGATTATAAAA+AGG | + | chr5.1:17692235-17692254 | None:intergenic | 15.0% |
| !! | AAAAGGGATTGAATAAAATT+AGG | + | chr5.1:17692218-17692237 | None:intergenic | 20.0% |
| !! | AAATCTATGCAAGAAAAAAA+CGG | + | chr5.1:17693290-17693309 | None:intergenic | 20.0% |
| !!! | TAAAAAAACATTTTTTGCAG+CGG | + | chr5.1:17692693-17692712 | None:intergenic | 20.0% |
| !!! | TTCTTTAAAAGTTAATGCAA+GGG | + | chr5.1:17693199-17693218 | None:intergenic | 20.0% |
| ! | ATAAAATGCATAGTCCTATT+TGG | + | chr5.1:17693441-17693460 | None:intergenic | 25.0% |
| ! | CTTCTTATGTTCTTTATCTA+TGG | - | chr5.1:17691616-17691635 | MS.gene72852:CDS | 25.0% |
| ! | GAGAAATAAACTGAATAAGA+AGG | - | chr5.1:17692946-17692965 | MS.gene72852:intron | 25.0% |
| ! | TCTATGATTAATCATGAGAA+AGG | + | chr5.1:17691803-17691822 | None:intergenic | 25.0% |
| ! | TCTCATGATTAATCATAGAT+AGG | - | chr5.1:17691804-17691823 | MS.gene72852:intron | 25.0% |
| ! | TTTATGTGATGTTGAATGAA+AGG | + | chr5.1:17693383-17693402 | None:intergenic | 25.0% |
| ! | TTTCATTCAACATCACATAA+AGG | - | chr5.1:17693382-17693401 | MS.gene72852:intron | 25.0% |
| !! | GTTCTTTAAAAGTTAATGCA+AGG | + | chr5.1:17693200-17693219 | None:intergenic | 25.0% |
| !! | TAATGATTTGCATACAATTC+AGG | - | chr5.1:17693753-17693772 | MS.gene72852:CDS | 25.0% |
| !! | TAATGTATTGATGTTCTAGA+TGG | + | chr5.1:17692190-17692209 | None:intergenic | 25.0% |
| !! | TAGTTACTTTCAAGTGAAAT+TGG | - | chr5.1:17692429-17692448 | MS.gene72852:intron | 25.0% |
| !!! | AATAATGACTTGTTCTAGAT+AGG | - | chr5.1:17691982-17692001 | MS.gene72852:intron | 25.0% |
| !!! | ATAATGACTTGTTCTAGATA+GGG | - | chr5.1:17691983-17692002 | MS.gene72852:intron | 25.0% |
| !!! | TAGATCCTTTTTTTTCTTTC+CGG | - | chr5.1:17692073-17692092 | MS.gene72852:intron | 25.0% |
| AAAGGAGAATAGAAGATACT+CGG | + | chr5.1:17693365-17693384 | None:intergenic | 30.0% | |
| AACACATCTTACTTGAGTAT+TGG | + | chr5.1:17691834-17691853 | None:intergenic | 30.0% | |
| AGTTTCCGGAAAGAAAAAAA+AGG | + | chr5.1:17692081-17692100 | None:intergenic | 30.0% | |
| ATAAACTGAATAAGAAGGCA+AGG | - | chr5.1:17692951-17692970 | MS.gene72852:intron | 30.0% | |
| ATAATACAGTAGACGATACA+AGG | + | chr5.1:17692795-17692814 | None:intergenic | 30.0% | |
| ATTCAGTTGACAGTGAAATT+CGG | - | chr5.1:17693623-17693642 | MS.gene72852:CDS | 30.0% | |
| CATAAAATACCTTGTTGCAA+TGG | + | chr5.1:17693316-17693335 | None:intergenic | 30.0% | |
| CTTCAAATTTATGCATTGCA+AGG | - | chr5.1:17693076-17693095 | MS.gene72852:intron | 30.0% | |
| TCAAAGTCATTCATATGAGA+AGG | + | chr5.1:17691583-17691602 | None:intergenic | 30.0% | |
| TCAAGAACTAACATATCTAG+TGG | + | chr5.1:17692768-17692787 | None:intergenic | 30.0% | |
| TGTAAATGGTGTATTCTTTG+CGG | - | chr5.1:17692857-17692876 | MS.gene72852:intron | 30.0% | |
| ! | ATGTTAAAACGAAGCTTTAG+TGG | - | chr5.1:17692367-17692386 | MS.gene72852:intron | 30.0% |
| ! | GTACTAGCAAAATAACTTGT+TGG | + | chr5.1:17692272-17692291 | None:intergenic | 30.0% |
| ! | GTTTAATTTCCACAGTACAT+CGG | + | chr5.1:17692326-17692345 | None:intergenic | 30.0% |
| ! | TGCATTTTATCTTCAATTGC+CGG | - | chr5.1:17693451-17693470 | MS.gene72852:CDS | 30.0% |
| !! | AGTTTTGCTACATGATTTGT+GGG | + | chr5.1:17692566-17692585 | None:intergenic | 30.0% |
| !! | CAAACTGCTTTTGTTCTTTA+TGG | - | chr5.1:17693550-17693569 | MS.gene72852:CDS | 30.0% |
| !! | TTGCATAGTTCTGAATTTCA+GGG | - | chr5.1:17692044-17692063 | MS.gene72852:intron | 30.0% |
| AACTATGCAACTGAATTGTG+TGG | - | chr5.1:17692097-17692116 | MS.gene72852:intron | 35.0% | |
| ACTCACCTCAAGATAATTGT+TGG | - | chr5.1:17691544-17691563 | MS.gene72852:CDS | 35.0% | |
| AGATTTCTTCCATTGCAACA+AGG | - | chr5.1:17693304-17693323 | MS.gene72852:intron | 35.0% | |
| CAATTCAGTTGCATAGTTTC+CGG | + | chr5.1:17692095-17692114 | None:intergenic | 35.0% | |
| CTTCAAATTTATGCATTGCG+AGG | - | chr5.1:17693116-17693135 | MS.gene72852:intron | 35.0% | |
| GATTTGCATACAATTCAGGA+TGG | - | chr5.1:17693757-17693776 | MS.gene72852:CDS | 35.0% | |
| GTGTGTTTAGTTAAAGATGC+AGG | + | chr5.1:17693163-17693182 | None:intergenic | 35.0% | |
| TATGAATGACTTTGAGCACT+CGG | - | chr5.1:17691588-17691607 | MS.gene72852:CDS | 35.0% | |
| TATGCAAGAAAAAAACGGAG+AGG | + | chr5.1:17693285-17693304 | None:intergenic | 35.0% | |
| TGGAAAGTTGTTTGGAAGAA+GGG | + | chr5.1:17693479-17693498 | None:intergenic | 35.0% | |
| TTCAGTTGACAGTGAAATTC+GGG | - | chr5.1:17693624-17693643 | MS.gene72852:CDS | 35.0% | |
| ! | CAAGTAAGATGTGTTCTAGA+CGG | - | chr5.1:17691839-17691858 | MS.gene72852:intron | 35.0% |
| ! | GAGTTTTGCTACATGATTTG+TGG | + | chr5.1:17692567-17692586 | None:intergenic | 35.0% |
| ! | GCTTTTTGTGTGACTGTAAA+TGG | - | chr5.1:17692843-17692862 | MS.gene72852:intron | 35.0% |
| ! | TGTATTGATGTTCTAGATGG+AGG | + | chr5.1:17692187-17692206 | None:intergenic | 35.0% |
| !! | GGCTCTAAAAGTTAACATTG+TGG | - | chr5.1:17692613-17692632 | MS.gene72852:intron | 35.0% |
| !! | GTTGCATAGTTCTGAATTTC+AGG | - | chr5.1:17692043-17692062 | MS.gene72852:intron | 35.0% |
| !!! | GACGTTGTTTTTTGTAGTTG+GGG | - | chr5.1:17691354-17691373 | MS.gene72852:CDS | 35.0% |
| !!! | GGACGTTGTTTTTTGTAGTT+GGG | - | chr5.1:17691353-17691372 | MS.gene72852:CDS | 35.0% |
| AAATCGGCTGGAAAGTTGTT+TGG | + | chr5.1:17693487-17693506 | None:intergenic | 40.0% | |
| AACATCACATAAAGGTCTCG+AGG | - | chr5.1:17693390-17693409 | MS.gene72852:intron | 40.0% | |
| ACATCACATAAAGGTCTCGA+GGG | - | chr5.1:17693391-17693410 | MS.gene72852:intron | 40.0% | |
| ACCAGATGGTTGCAAGATTA+AGG | - | chr5.1:17693582-17693601 | MS.gene72852:CDS | 40.0% | |
| ACTACAAAAAACAACGTCCC+CGG | + | chr5.1:17691352-17691371 | None:intergenic | 40.0% | |
| ATAGTCCTATTTGGAAGACG+AGG | + | chr5.1:17693432-17693451 | None:intergenic | 40.0% | |
| ATCCTAAGACGTTTCGTGTT+CGG | - | chr5.1:17691416-17691435 | MS.gene72852:CDS | 40.0% | |
| ATGAATGACTTTGAGCACTC+GGG | - | chr5.1:17691589-17691608 | MS.gene72852:CDS | 40.0% | |
| CACCTCAAGATAATTGTTGG+CGG | - | chr5.1:17691547-17691566 | MS.gene72852:CDS | 40.0% | |
| CTCCAATAAGTCCATGTTGT+AGG | - | chr5.1:17692584-17692603 | MS.gene72852:intron | 40.0% | |
| CTCTACTTAGCGAAAAAACC+AGG | - | chr5.1:17691647-17691666 | MS.gene72852:CDS | 40.0% | |
| CTGGAAAGTTGTTTGGAAGA+AGG | + | chr5.1:17693480-17693499 | None:intergenic | 40.0% | |
| GAAAAAAACGGAGAGGAGTA+TGG | + | chr5.1:17693278-17693297 | None:intergenic | 40.0% | |
| GAGCAATAGATGAACTAACC+TGG | + | chr5.1:17691668-17691687 | None:intergenic | 40.0% | |
| GAGCTCTATGTTGTTGCAAT+TGG | - | chr5.1:17691484-17691503 | MS.gene72852:CDS | 40.0% | |
| TCAGTTGACAGTGAAATTCG+GGG | - | chr5.1:17693625-17693644 | MS.gene72852:CDS | 40.0% | |
| TCCTTAATCTTGCAACCATC+TGG | + | chr5.1:17693586-17693605 | None:intergenic | 40.0% | |
| TGCAACCATCTGGTATCATA+GGG | + | chr5.1:17693576-17693595 | None:intergenic | 40.0% | |
| TGCCTACAACATGGACTTAT+TGG | + | chr5.1:17692589-17692608 | None:intergenic | 40.0% | |
| TTGCAACCATCTGGTATCAT+AGG | + | chr5.1:17693577-17693596 | None:intergenic | 40.0% | |
| TTTATGTTTCCTAGCTGCCA+TGG | - | chr5.1:17693330-17693349 | MS.gene72852:intron | 40.0% | |
| ! | TTTCCAGCCGATTTATGCAA+CGG | - | chr5.1:17693493-17693512 | MS.gene72852:CDS | 40.0% |
| !! | TACAGAGTGTTGCCAAATAG+TGG | + | chr5.1:17691941-17691960 | None:intergenic | 40.0% |
| !! | TCTAGACGGTGTTGTCAATT+GGG | - | chr5.1:17691853-17691872 | MS.gene72852:intron | 40.0% |
| !! | TTCTAGACGGTGTTGTCAAT+TGG | - | chr5.1:17691852-17691871 | MS.gene72852:intron | 40.0% |
| !!! | GGGACGTTGTTTTTTGTAGT+TGG | - | chr5.1:17691352-17691371 | MS.gene72852:CDS | 40.0% |
| !!! | TGTTTTTTGTAGTTGGGGTG+TGG | - | chr5.1:17691359-17691378 | MS.gene72852:CDS | 40.0% |
| AGCGATGCCGTTGCATAAAT+CGG | + | chr5.1:17693503-17693522 | None:intergenic | 45.0% | |
| AGTCCATGTTGTAGGCAGTT+TGG | - | chr5.1:17692592-17692611 | MS.gene72852:intron | 45.0% | |
| AGTTGGGGTGTGGCATATTT+GGG | - | chr5.1:17691369-17691388 | MS.gene72852:CDS | 45.0% | |
| ATCGGATGAAATGGATGCGA+AGG | + | chr5.1:17692308-17692327 | None:intergenic | 45.0% | |
| CACCGCCAACAATTATCTTG+AGG | + | chr5.1:17691552-17691571 | None:intergenic | 45.0% | |
| CCACAGTACATCGGATGAAA+TGG | + | chr5.1:17692317-17692336 | None:intergenic | 45.0% | |
| CCATTTCATCCGATGTACTG+TGG | - | chr5.1:17692314-17692333 | MS.gene72852:intron | 45.0% | |
| GCACAGCGGAATATGAACAA+CGG | + | chr5.1:17691894-17691913 | None:intergenic | 45.0% | |
| GCATCAGTGTAGCCACTATT+TGG | - | chr5.1:17691926-17691945 | MS.gene72852:intron | 45.0% | |
| GGAGAATAGAAGATACTCGG+CGG | + | chr5.1:17693362-17693381 | None:intergenic | 45.0% | |
| GGTTGACAATACTCTGACGT+GGG | - | chr5.1:17692118-17692137 | MS.gene72852:intron | 45.0% | |
| TAGTTGGGGTGTGGCATATT+TGG | - | chr5.1:17691368-17691387 | MS.gene72852:CDS | 45.0% | |
| TATGGATGGACCTCAGGTTT+AGG | - | chr5.1:17692154-17692173 | MS.gene72852:intron | 45.0% | |
| TATGGCCCTATGATACCAGA+TGG | - | chr5.1:17693568-17693587 | MS.gene72852:CDS | 45.0% | |
| TCCTAAGACGTTTCGTGTTC+GGG | - | chr5.1:17691417-17691436 | MS.gene72852:CDS | 45.0% | |
| TCCTATTTGGAAGACGAGGA+GGG | + | chr5.1:17693428-17693447 | None:intergenic | 45.0% | |
| TCGGATGAAATGGATGCGAA+GGG | + | chr5.1:17692307-17692326 | None:intergenic | 45.0% | |
| TGAATGACTTTGAGCACTCG+GGG | - | chr5.1:17691590-17691609 | MS.gene72852:CDS | 45.0% | |
| TGCAACTGAATTGCGTGTCA+AGG | + | chr5.1:17692029-17692048 | None:intergenic | 45.0% | |
| TGCAGCGGCAACAACAAATA+CGG | + | chr5.1:17692678-17692697 | None:intergenic | 45.0% | |
| TGGTTGACAATACTCTGACG+TGG | - | chr5.1:17692117-17692136 | MS.gene72852:intron | 45.0% | |
| TTTAGCCTCCCATCAAAACC+CGG | + | chr5.1:17691457-17691476 | None:intergenic | 45.0% | |
| TTTCAAGGGTCATGCTTTGC+CGG | - | chr5.1:17691330-17691349 | MS.gene72852:CDS | 45.0% | |
| ! | TGATGGGAGGCTAAAGTACT+TGG | - | chr5.1:17691462-17691481 | MS.gene72852:CDS | 45.0% |
| !! | AATCCTGTACCGGGTTTTGA+TGG | - | chr5.1:17691445-17691464 | MS.gene72852:CDS | 45.0% |
| !! | ATCCTGTACCGGGTTTTGAT+GGG | - | chr5.1:17691446-17691465 | MS.gene72852:CDS | 45.0% |
| !! | CTAGACGGTGTTGTCAATTG+GGG | - | chr5.1:17691854-17691873 | MS.gene72852:intron | 45.0% |
| ACCAACAAGAACCGCAAGGA+TGG | + | chr5.1:17693683-17693702 | None:intergenic | 50.0% | |
| ACCCTCCTCGTCTTCCAAAT+AGG | - | chr5.1:17693424-17693443 | MS.gene72852:intron | 50.0% | |
| AGGATTCGTGCCTAAACCTG+AGG | + | chr5.1:17692167-17692186 | None:intergenic | 50.0% | |
| ATACTCGGCGGAAAATGCCA+TGG | + | chr5.1:17693350-17693369 | None:intergenic | 50.0% | |
| ATGCCGTTGCATAAATCGGC+TGG | + | chr5.1:17693499-17693518 | None:intergenic | 50.0% | |
| CAGTACCAACAAGAACCGCA+AGG | + | chr5.1:17693687-17693706 | None:intergenic | 50.0% | |
| CTTTAGCGCTGCAAGGCATA+TGG | - | chr5.1:17693521-17693540 | MS.gene72852:CDS | 50.0% | |
| GAGCCAAACTGCCTACAACA+TGG | + | chr5.1:17692598-17692617 | None:intergenic | 50.0% | |
| GCTATAGCACTGTAGCACAG+CGG | + | chr5.1:17691908-17691927 | None:intergenic | 50.0% | |
| GCTCTTTGTTGCCATCCTTG+CGG | - | chr5.1:17693669-17693688 | MS.gene72852:CDS | 50.0% | |
| GTCCTATTTGGAAGACGAGG+AGG | + | chr5.1:17693429-17693448 | None:intergenic | 50.0% | |
| GTTGTTTGGAAGAAGGGCTC+CGG | + | chr5.1:17693473-17693492 | None:intergenic | 50.0% | |
| TTCAAGGGTCATGCTTTGCC+GGG | - | chr5.1:17691331-17691350 | MS.gene72852:CDS | 50.0% | |
| CGGAAAATGCCATGGCAGCT+AGG | + | chr5.1:17693342-17693361 | None:intergenic | 55.0% | |
| CTCCCATCAAAACCCGGTAC+AGG | + | chr5.1:17691451-17691470 | None:intergenic | 55.0% | |
| CTGTGGTATGGATGGACCTC+AGG | - | chr5.1:17692148-17692167 | MS.gene72852:intron | 55.0% | |
| GACCTCCTCTGTGGTATGGA+TGG | - | chr5.1:17692140-17692159 | MS.gene72852:intron | 55.0% | |
| GAGGTCCATCCATACCACAG+AGG | + | chr5.1:17692148-17692167 | None:intergenic | 55.0% | |
| GCCATCCTTGCGGTTCTTGT+TGG | - | chr5.1:17693679-17693698 | MS.gene72852:CDS | 55.0% | |
| GCCCGAACACGAAACGTCTT+AGG | + | chr5.1:17691421-17691440 | None:intergenic | 55.0% | |
| GTCCATCCATACCACAGAGG+AGG | + | chr5.1:17692145-17692164 | None:intergenic | 55.0% | |
| TCAAGGGTCATGCTTTGCCG+GGG | - | chr5.1:17691332-17691351 | MS.gene72852:CDS | 55.0% | |
| TTTGGAAGACGAGGAGGGTG+TGG | + | chr5.1:17693423-17693442 | None:intergenic | 55.0% | |
| !! | CTGTACCGGGTTTTGATGGG+AGG | - | chr5.1:17691449-17691468 | MS.gene72852:CDS | 55.0% |
| AGACGTTTCGTGTTCGGGCG+TGG | - | chr5.1:17691422-17691441 | MS.gene72852:CDS | 60.0% | |
| GGCATCGCTTTAGCGCTGCA+AGG | - | chr5.1:17693514-17693533 | MS.gene72852:CDS | 60.0% | |
| GTGGGACCTCCTCTGTGGTA+TGG | - | chr5.1:17692136-17692155 | MS.gene72852:intron | 60.0% | |
| TCGGGCGTGGAATCCTGTAC+CGG | - | chr5.1:17691435-17691454 | MS.gene72852:CDS | 60.0% | |
| CGGGCGTGGAATCCTGTACC+GGG | - | chr5.1:17691436-17691455 | MS.gene72852:CDS | 65.0% | |
| CTGACGTGGGACCTCCTCTG+TGG | - | chr5.1:17692131-17692150 | MS.gene72852:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 17691322 | 17693795 | 17691322 | ID=MS.gene72852 |
| chr5.1 | mRNA | 17691322 | 17693795 | 17691322 | ID=MS.gene72852.t1;Parent=MS.gene72852 |
| chr5.1 | exon | 17693449 | 17693795 | 17693449 | ID=MS.gene72852.t1.exon1;Parent=MS.gene72852.t1 |
| chr5.1 | CDS | 17693449 | 17693795 | 17693449 | ID=cds.MS.gene72852.t1;Parent=MS.gene72852.t1 |
| chr5.1 | exon | 17691322 | 17691811 | 17691322 | ID=MS.gene72852.t1.exon2;Parent=MS.gene72852.t1 |
| chr5.1 | CDS | 17691322 | 17691811 | 17691322 | ID=cds.MS.gene72852.t1;Parent=MS.gene72852.t1 |
| Gene Sequence |
| Protein sequence |
