AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene72871

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene72871.t1 MTR_5g073960 77.913 412 90 1 6 417 5 415 0.0 648
MS.gene72871.t1 MTR_5g074130 49.488 683 315 10 1 659 1 677 0.0 601
MS.gene72871.t1 MTR_5g073920 47.971 690 317 11 4 672 3 671 0.0 583
MS.gene72871.t1 MTR_5g073460 48.186 689 315 12 6 655 5 690 0.0 580
MS.gene72871.t1 MTR_3g464010 47.222 684 317 13 6 661 5 672 0.0 565
MS.gene72871.t1 MTR_5g073480 45.575 678 280 14 6 651 5 625 6.35e-175 513
MS.gene72871.t1 MTR_5g073900 69.468 357 94 2 270 626 1 342 8.33e-171 492
MS.gene72871.t1 MTR_5g073620 47.811 571 234 8 5 525 4 560 1.03e-151 467
MS.gene72871.t1 MTR_5g073620 42.510 247 120 5 419 656 834 1067 2.82e-43 168
MS.gene72871.t1 MTR_5g073880 70.111 271 60 3 1 270 1 251 1.59e-124 370
MS.gene72871.t1 MTR_5g073450 45.393 445 206 9 243 655 192 631 5.40e-104 330
MS.gene72871.t1 MTR_5g073810 42.889 450 188 10 6 424 5 416 1.46e-98 309
MS.gene72871.t1 MTR_3g031130 44.843 446 201 13 244 655 183 617 5.13e-95 306
MS.gene72871.t1 MTR_5g074190 56.537 283 69 4 380 661 184 413 5.02e-94 300
MS.gene72871.t1 MTR_5g074190 78.495 186 37 1 6 191 2 184 6.10e-92 295
MS.gene72871.t1 MTR_5g093530 63.291 237 84 2 1 237 1 234 3.30e-89 290
MS.gene72871.t1 MTR_5g093530 40.510 353 179 4 316 659 244 574 5.03e-69 236
MS.gene72871.t1 MTR_5g073610 47.826 322 150 8 6 319 5 316 9.67e-83 265
MS.gene72871.t1 MTR_5g074450 56.911 246 86 2 4 229 3 248 9.89e-82 268
MS.gene72871.t1 MTR_5g073770 41.339 433 172 8 6 416 5 377 5.28e-80 259
MS.gene72871.t1 MTR_5g073470 47.855 303 106 5 6 308 5 255 3.10e-73 238
MS.gene72871.t1 MTR_5g073750 50.545 275 131 4 6 276 5 278 3.99e-73 238
MS.gene72871.t1 MTR_5g073840 58.491 212 81 4 3 210 2 210 3.53e-70 229
MS.gene72871.t1 MTR_5g073820 35.417 528 195 16 11 516 29 432 4.42e-67 228
MS.gene72871.t1 MTR_5g074090 54.774 199 72 4 14 210 13 195 3.54e-59 199
MS.gene72871.t1 MTR_5g074150 62.025 158 60 0 14 171 24 181 4.20e-57 194
MS.gene72871.t1 MTR_5g074200 47.009 234 117 3 7 237 3 232 6.03e-55 191
MS.gene72871.t1 MTR_5g073860 67.153 137 41 2 8 144 21 153 1.70e-52 186
MS.gene72871.t1 MTR_5g073650 35.977 353 158 9 103 425 1 315 2.06e-49 176
MS.gene72871.t1 MTR_4g103540 29.385 439 273 11 249 655 245 678 3.06e-47 178
MS.gene72871.t1 MTR_8g021330 28.345 441 269 10 252 649 161 597 4.07e-47 176
MS.gene72871.t1 MTR_5g073780 42.060 233 114 4 433 656 2 222 2.16e-46 164
MS.gene72871.t1 MTR_7g026630 28.083 527 301 17 197 655 132 648 3.22e-46 174
MS.gene72871.t1 MTR_5g073660 40.925 281 94 6 11 261 29 267 3.49e-46 166
MS.gene72871.t1 MTR_6g033310 29.213 445 261 10 257 655 287 723 5.53e-46 174
MS.gene72871.t1 MTR_1g057560 28.472 432 268 10 255 655 202 623 9.10e-45 170
MS.gene72871.t1 MTR_1g090620 27.664 441 270 11 255 655 208 639 6.79e-44 167
MS.gene72871.t1 MTR_5g074070 53.165 158 52 3 3 159 2 138 1.98e-39 145
MS.gene72871.t1 MTR_7g013770 27.434 452 269 16 251 655 225 664 3.11e-38 151
MS.gene72871.t1 MTR_6g078770 50.000 156 77 1 19 173 109 264 2.79e-37 143
MS.gene72871.t1 MTR_6g078610 39.147 258 122 7 5 229 580 835 1.26e-36 147
MS.gene72871.t1 MTR_1g117090 26.013 469 272 12 258 656 204 667 2.96e-32 133
MS.gene72871.t1 MTR_3g025900 25.164 457 291 13 226 648 160 599 1.35e-31 130
MS.gene72871.t1 MTR_2g096230 24.722 449 285 12 253 666 158 588 2.31e-31 129
MS.gene72871.t1 MTR_6g075870 40.719 167 97 2 11 175 605 771 9.30e-31 129
MS.gene72871.t1 MTR_5g093540 45.752 153 57 2 7 159 3 129 1.19e-30 121
MS.gene72871.t1 MTR_5g073500 46.622 148 48 2 14 161 1 117 1.83e-30 116
MS.gene72871.t1 MTR_4g062330 24.569 464 273 12 244 647 155 601 2.20e-29 124
MS.gene72871.t1 MTR_4g023690 72.222 72 19 1 71 142 16 86 9.75e-28 107
MS.gene72871.t1 MTR_1g067460 26.164 451 271 18 252 655 164 599 1.06e-27 119
MS.gene72871.t1 MTR_1g067480 26.622 447 273 17 252 655 166 600 3.12e-27 117
MS.gene72871.t1 MTR_5g073830 63.095 84 30 1 4 86 3 86 1.50e-24 102
MS.gene72871.t1 MTR_5g073490 38.182 165 76 4 502 655 3 152 5.15e-24 99.4
MS.gene72871.t1 MTR_4g023660 57.143 84 35 1 219 302 1 83 1.07e-23 96.3
MS.gene72871.t1 MTR_6g078620 38.323 167 68 3 13 176 86 220 1.14e-21 94.7
MS.gene72871.t1 MTR_6g078770 37.736 159 67 2 19 176 109 236 2.59e-20 92.8
MS.gene72871.t1 MTR_4g023700 50.667 75 36 1 219 293 1 74 1.69e-17 77.8
MS.gene72871.t1 MTR_4g024790 50.602 83 23 2 423 505 1 65 1.09e-14 69.3
MS.gene72871.t1 MTR_5g073850 37.705 122 71 3 86 206 13 130 1.88e-14 72.0
MS.gene72871.t1 MTR_7g017290 70.455 44 13 0 571 614 46 89 7.75e-13 65.1
MS.gene72871.t1 MTR_7g017290 65.217 46 15 1 448 493 1 45 1.35e-11 61.6
MS.gene72871.t1 MTR_6g078630 61.111 54 21 0 16 69 201 254 8.63e-13 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene72871.t1 AT5G58430 43.119 436 215 9 245 655 189 616 5.02e-100 319
MS.gene72871.t1 AT1G07000 36.758 438 236 11 245 655 171 594 6.35e-74 249
MS.gene72871.t1 AT1G54090 28.668 443 260 11 252 648 170 602 2.50e-50 186
MS.gene72871.t1 AT1G72470 29.047 451 264 11 252 655 178 619 1.29e-48 181
MS.gene72871.t1 AT3G14090 26.471 442 270 11 252 648 173 604 3.72e-48 179
MS.gene72871.t1 AT5G13150 29.932 441 258 11 258 655 210 642 1.65e-46 175
MS.gene72871.t1 AT5G50380 27.955 440 276 11 252 655 235 669 9.75e-46 173
MS.gene72871.t1 AT5G03540 27.790 439 267 12 255 655 87 513 2.56e-44 167
MS.gene72871.t1 AT5G03540 28.345 441 262 12 255 655 202 628 6.87e-44 167
MS.gene72871.t1 AT5G03540 28.345 441 262 12 255 655 228 654 8.79e-44 167
MS.gene72871.t1 AT5G52340 28.904 429 268 9 255 655 202 621 6.60e-43 164
MS.gene72871.t1 AT5G13990 29.195 435 261 13 256 655 257 679 7.75e-42 162
MS.gene72871.t1 AT3G29400 25.161 465 277 13 249 655 194 645 1.18e-33 137
MS.gene72871.t1 AT5G52350 26.147 436 285 10 255 662 156 582 1.43e-33 136
MS.gene72871.t1 AT1G07725 25.576 434 270 13 258 656 175 590 3.91e-30 126
MS.gene72871.t1 AT2G39380 25.221 452 271 13 258 655 170 608 3.99e-29 123
MS.gene72871.t1 AT2G28640 26.464 461 289 13 240 663 137 584 3.35e-28 120
MS.gene72871.t1 AT5G59730 25.558 403 248 13 258 618 165 557 8.48e-26 113
MS.gene72871.t1 AT5G59730 25.558 403 248 13 258 618 165 557 1.20e-25 112
MS.gene72871.t1 AT3G09530 24.390 451 285 15 252 655 159 600 2.74e-25 111
MS.gene72871.t1 AT3G09520 26.144 459 282 18 245 655 155 604 8.67e-24 107
MS.gene72871.t1 AT5G61010 23.150 419 279 13 267 655 219 624 1.54e-22 103
MS.gene72871.t1 AT5G61010 23.150 419 279 13 267 655 219 624 1.54e-22 103
MS.gene72871.t1 AT3G55150 25.285 439 265 15 263 655 187 608 1.72e-22 102
MS.gene72871.t1 AT2G28650 25.416 421 268 10 263 655 152 554 1.77e-22 102
MS.gene72871.t1 AT4G31540 22.466 365 261 8 312 656 293 655 6.65e-14 75.9
MS.gene72871.t1 AT1G51640 24.484 339 231 6 312 625 253 591 3.70e-11 67.0

Find 88 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACGTTAACAAGATGTTTA+TGG 0.138739 5.1:+18001644 MS.gene72871:CDS
ATTGAATCTGCTTTAGAATT+TGG 0.139042 5.1:-18002671 None:intergenic
TCAACCATCTATTTGGAAAT+TGG 0.148000 5.1:+18001082 MS.gene72871:CDS
GCATCAGCCACCTCTGAATT+TGG 0.162332 5.1:-18000984 None:intergenic
TCTTCCTTCAACCATCTATT+TGG 0.201070 5.1:+18001075 MS.gene72871:CDS
AGTACCAACTTGAAACCTTT+TGG 0.261690 5.1:+18002540 MS.gene72871:CDS
TTGTTAATAAATAAATTATT+AGG 0.264803 5.1:+18001843 MS.gene72871:CDS
AAGATGGATTAAAGCTTCTA+AGG 0.301067 5.1:+18001902 MS.gene72871:CDS
AATTCCAATTTCCAAATAGA+TGG 0.301868 5.1:-18001086 None:intergenic
AGTAAACAAGGATTCAAATT+CGG 0.329353 5.1:-18002141 None:intergenic
ATGAAGATTAGTTTGTTGTT+AGG 0.331531 5.1:+18001411 MS.gene72871:CDS
GCTACTGTCTTATCATTATT+CGG 0.332438 5.1:+18001454 MS.gene72871:CDS
GGTGAAAGGTAACTATAAAT+TGG 0.343122 5.1:+18001671 MS.gene72871:CDS
TTGGATGAGTATATAGAGTA+TGG 0.350795 5.1:+18002869 MS.gene72871:CDS
AGCCACCGGCTACATCGTTT+TGG 0.351952 5.1:+18002316 MS.gene72871:CDS
GTAAACAAGGATTCAAATTC+GGG 0.365812 5.1:-18002140 None:intergenic
GGATTTCAGGATTACATGAT+TGG 0.384710 5.1:+18001879 MS.gene72871:CDS
AGTTTGTTGTTAGGTATTGT+TGG 0.387999 5.1:+18001420 MS.gene72871:CDS
TTCTCTGATAAAATTATGAA+TGG 0.400575 5.1:+18001255 MS.gene72871:CDS
TTCACAGATAGAGCTTATAA+TGG 0.404307 5.1:+18002424 MS.gene72871:CDS
GATAAGACAGTAGCTGTAAC+AGG 0.405810 5.1:-18001445 None:intergenic
GGATTTGCTTCATCTGTTGT+TGG 0.417556 5.1:+18001030 MS.gene72871:CDS
GAGGATGTTGATTGTGTAAG+AGG 0.430127 5.1:+18002935 MS.gene72871:CDS
CAACGAGATGAAAATACTAA+TGG 0.440945 5.1:+18001561 MS.gene72871:CDS
CGATGCAGAGTTGGATTGTT+GGG 0.442610 5.1:+18002262 MS.gene72871:CDS
GCGAAATTGATGGTGGATGC+TGG 0.444052 5.1:+18001762 MS.gene72871:CDS
GAGGTGGCTGATGCATAAAA+AGG 0.445395 5.1:+18000993 MS.gene72871:CDS
AAGCACTGAAATTCAAGAAT+AGG 0.445504 5.1:+18002180 MS.gene72871:CDS
ATCCTAGATAAAAGTACATA+AGG 0.447221 5.1:-18001371 None:intergenic
TAACAAAACCGCGAAATTGA+TGG 0.451233 5.1:+18001752 MS.gene72871:CDS
TACCCTTTGGTTGTTGCTGA+TGG 0.458174 5.1:+18002380 MS.gene72871:CDS
CATATGAAAACTTCATTGCT+AGG 0.458950 5.1:+18002822 MS.gene72871:CDS
AATCTTACAAGAATACCCTT+TGG 0.462105 5.1:+18002367 MS.gene72871:CDS
CTGAAATTCAAGAATAGGTT+GGG 0.462376 5.1:+18002185 MS.gene72871:CDS
GGCAACATTCGACAAGTCTT+CGG 0.468429 5.1:+18001178 MS.gene72871:CDS
TCTTCGGTTCAAAGCTCATT+CGG 0.473442 5.1:+18001194 MS.gene72871:CDS
AGGATTACATGATTGGAAGA+TGG 0.476310 5.1:+18001886 MS.gene72871:CDS
ACAAAATCCATCATCCCAAA+AGG 0.477678 5.1:-18002555 None:intergenic
CCGATGCAGAGTTGGATTGT+TGG 0.483382 5.1:+18002261 MS.gene72871:CDS
ATTGTGTAAGAGGATCAATT+AGG 0.486326 5.1:+18002945 MS.gene72871:CDS
ATCCTTGTTTACTGATTCGT+TGG 0.486501 5.1:+18002151 MS.gene72871:CDS
ATTTCCAAATAGATGGTTGA+AGG 0.486838 5.1:-18001079 None:intergenic
AGGCGATTGATTGTTTCATC+CGG 0.488161 5.1:-18001729 None:intergenic
ATATAATTCAGAGTTTGATT+CGG 0.490568 5.1:-18001979 None:intergenic
CAACAATCCAACTCTGCATC+GGG 0.493910 5.1:-18002260 None:intergenic
GGTGGATGCTGGGTTTGATA+AGG 0.498506 5.1:+18001773 MS.gene72871:CDS
AGCATCCACCATCAATTTCG+CGG 0.500622 5.1:-18001760 None:intergenic
ACATTAGTTTGCGTAAAGAA+TGG 0.500641 5.1:+18001811 MS.gene72871:CDS
TTGTAGAGTCGCCGTTCACT+TGG 0.503028 5.1:-18001945 None:intergenic
TTGGATTGTTGGGCTGATGG+TGG 0.506236 5.1:+18002272 MS.gene72871:CDS
GAGTTGGATTGTTGGGCTGA+TGG 0.509673 5.1:+18002269 MS.gene72871:CDS
TTGGTTGTTGCTGATGGAGT+AGG 0.521302 5.1:+18002386 MS.gene72871:CDS
TAACAAGATGTTTATGGAGA+AGG 0.521373 5.1:+18001650 MS.gene72871:CDS
ACTGAAATTCAAGAATAGGT+TGG 0.527255 5.1:+18002184 MS.gene72871:CDS
AGGATCAATTAGGATTCAGT+TGG 0.532656 5.1:+18002955 MS.gene72871:CDS
AAATACTATTTCCAAGTGAA+CGG 0.536396 5.1:+18001934 MS.gene72871:CDS
CAGAAGTTTCGGGAGATATG+TGG 0.544254 5.1:+18002719 MS.gene72871:CDS
CGAAATTGATGGTGGATGCT+GGG 0.549388 5.1:+18001763 MS.gene72871:CDS
CTCCATCAGCAACAACCAAA+GGG 0.550645 5.1:-18002382 None:intergenic
TAGTTTGCGTAAAGAATGGT+TGG 0.552491 5.1:+18001815 MS.gene72871:CDS
TCTTACACCCGATGCAGAGT+TGG 0.555038 5.1:+18002253 MS.gene72871:CDS
CCAACAATCCAACTCTGCAT+CGG 0.555872 5.1:-18002261 None:intergenic
ACGCAAGAAACTCAGTGTCT+TGG 0.557695 5.1:+18001501 MS.gene72871:CDS
TTTCTGGTCAAGGAAGAACT+TGG 0.559149 5.1:+18002340 MS.gene72871:CDS
TTCTAAAGCAGATTCAATGA+AGG 0.559551 5.1:+18002676 MS.gene72871:CDS
CTTCATAATTGATTCCGTGC+CGG 0.562815 5.1:+18001710 MS.gene72871:CDS
AATTCAGTGTGGATTTGAAG+TGG 0.567441 5.1:+18001347 MS.gene72871:CDS
TTAAACAAACGCCACGCTGA+AGG 0.567785 5.1:-18002080 None:intergenic
GAAAGGTAACTATAAATTGG+TGG 0.572426 5.1:+18001674 MS.gene72871:CDS
CCGGTGGCTTCACATGTCAT+AGG 0.574627 5.1:-18002302 None:intergenic
ACTCCATCAGCAACAACCAA+AGG 0.577154 5.1:-18002383 None:intergenic
ATGTTTATGGAGAAGGTGAA+AGG 0.581958 5.1:+18001657 MS.gene72871:CDS
GAAAGCCAAAACGATGTAGC+CGG 0.589042 5.1:-18002321 None:intergenic
CTCTCATCCAAATTCAGAGG+TGG 0.592010 5.1:+18000977 MS.gene72871:CDS
CATCCCAAAAGGTTTCAAGT+TGG 0.593566 5.1:-18002544 None:intergenic
CCTCTGAATTTGGATGAGAG+TGG 0.599690 5.1:-18000974 None:intergenic
CGAGATGAAAATACTAATGG+TGG 0.614642 5.1:+18001564 MS.gene72871:CDS
ATTGATTGTTTCATCCGGCA+CGG 0.620872 5.1:-18001724 None:intergenic
CAAAACCGCGAAATTGATGG+TGG 0.624881 5.1:+18001755 MS.gene72871:CDS
AACCAACGAATCAGTAAACA+AGG 0.627549 5.1:-18002153 None:intergenic
CCTATGACATGTGAAGCCAC+CGG 0.631734 5.1:+18002302 MS.gene72871:CDS
CCACTCTCATCCAAATTCAG+AGG 0.632190 5.1:+18000974 MS.gene72871:CDS
GCTAAGTGACATGATCGCAA+AGG 0.670694 5.1:-18001313 None:intergenic
AGCCAAAACGATGTAGCCGG+TGG 0.678386 5.1:-18002318 None:intergenic
TATGTGGAATTCAGTCAACA+TGG 0.701076 5.1:+18002735 MS.gene72871:CDS
AGCTAAGTCACAAATATACG+AGG 0.707978 5.1:+18002469 MS.gene72871:CDS
TGAATCAAAGTCCTTCAGCG+TGG 0.717777 5.1:+18002069 MS.gene72871:CDS
TTGTCGAGACAAATTCAGTG+TGG 0.737166 5.1:+18001336 MS.gene72871:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAATTCAGAGTTTGATT+CGG - chr5.1:18001982-18002001 None:intergenic 20.0%
!! TTCTCTGATAAAATTATGAA+TGG + chr5.1:18001255-18001274 MS.gene72871:CDS 20.0%
!!! AGAAAATTTTTCATGGAATT+TGG + chr5.1:18002218-18002237 MS.gene72871:CDS 20.0%
!!! AGTATGTAGAAAATTTTTCA+TGG + chr5.1:18002211-18002230 MS.gene72871:CDS 20.0%
!!! ATATGATCTTTGTTTTTTAG+AGG + chr5.1:18001998-18002017 MS.gene72871:CDS 20.0%
!!! ATTATTAGGTTTTAGAAAGA+TGG + chr5.1:18001857-18001876 MS.gene72871:CDS 20.0%
!!! CATAATTTTATCAGAGAAAA+AGG - chr5.1:18001253-18001272 None:intergenic 20.0%
!!! TTATTAGGTTTTAGAAAGAT+GGG + chr5.1:18001858-18001877 MS.gene72871:CDS 20.0%
! AAACGTTAACAAGATGTTTA+TGG + chr5.1:18001644-18001663 MS.gene72871:CDS 25.0%
! AAATACTATTTCCAAGTGAA+CGG + chr5.1:18001934-18001953 MS.gene72871:CDS 25.0%
! AATTCCAATTTCCAAATAGA+TGG - chr5.1:18001089-18001108 None:intergenic 25.0%
! AGTAAACAAGGATTCAAATT+CGG - chr5.1:18002144-18002163 None:intergenic 25.0%
!! ATCCTAGATAAAAGTACATA+AGG - chr5.1:18001374-18001393 None:intergenic 25.0%
!! TGATTTTCACGGTAAAAATT+TGG + chr5.1:18002850-18002869 MS.gene72871:CDS 25.0%
!!! ATGAAGATTAGTTTGTTGTT+AGG + chr5.1:18001411-18001430 MS.gene72871:CDS 25.0%
!!! ATTGAATCTGCTTTAGAATT+TGG - chr5.1:18002674-18002693 None:intergenic 25.0%
!!! GGAATTTTTTCAGACAAATT+TGG + chr5.1:18002445-18002464 MS.gene72871:CDS 25.0%
!!! TGATGGATTTTGTAAAAACA+AGG + chr5.1:18002565-18002584 MS.gene72871:CDS 25.0%
AATCTTACAAGAATACCCTT+TGG + chr5.1:18002367-18002386 MS.gene72871:CDS 30.0%
ACTGAAATTCAAGAATAGGT+TGG + chr5.1:18002184-18002203 MS.gene72871:CDS 30.0%
ATGAAAAAATAACGCAAAGC+AGG - chr5.1:18002497-18002516 None:intergenic 30.0%
ATTGTGTAAGAGGATCAATT+AGG + chr5.1:18002945-18002964 MS.gene72871:CDS 30.0%
ATTTCCAAATAGATGGTTGA+AGG - chr5.1:18001082-18001101 None:intergenic 30.0%
CAACGAGATGAAAATACTAA+TGG + chr5.1:18001561-18001580 MS.gene72871:CDS 30.0%
CATATGAAAACTTCATTGCT+AGG + chr5.1:18002822-18002841 MS.gene72871:CDS 30.0%
CTGAAATTCAAGAATAGGTT+GGG + chr5.1:18002185-18002204 MS.gene72871:CDS 30.0%
GAAAAAAGACTATATGCATC+TGG - chr5.1:18001285-18001304 None:intergenic 30.0%
GAAAGGTAACTATAAATTGG+TGG + chr5.1:18001674-18001693 MS.gene72871:CDS 30.0%
GCTACTGTCTTATCATTATT+CGG + chr5.1:18001454-18001473 MS.gene72871:CDS 30.0%
GGTGAAAGGTAACTATAAAT+TGG + chr5.1:18001671-18001690 MS.gene72871:CDS 30.0%
GTAAACAAGGATTCAAATTC+GGG - chr5.1:18002143-18002162 None:intergenic 30.0%
TAACAAGATGTTTATGGAGA+AGG + chr5.1:18001650-18001669 MS.gene72871:CDS 30.0%
TCAACCATCTATTTGGAAAT+TGG + chr5.1:18001082-18001101 MS.gene72871:CDS 30.0%
TGAAAAAATAACGCAAAGCA+GGG - chr5.1:18002496-18002515 None:intergenic 30.0%
TTCACAGATAGAGCTTATAA+TGG + chr5.1:18002424-18002443 MS.gene72871:CDS 30.0%
TTGGATGAGTATATAGAGTA+TGG + chr5.1:18002869-18002888 MS.gene72871:CDS 30.0%
! AAAAAGGTATGGAGATTTGT+TGG + chr5.1:18001009-18001028 MS.gene72871:CDS 30.0%
! GACCTTATGTACTTTTATCT+AGG + chr5.1:18001369-18001388 MS.gene72871:CDS 30.0%
!! AACTCTATTTTAGAAGCTCA+TGG + chr5.1:18002600-18002619 MS.gene72871:CDS 30.0%
!! AAGATGGATTAAAGCTTCTA+AGG + chr5.1:18001902-18001921 MS.gene72871:CDS 30.0%
!! AAGCACTGAAATTCAAGAAT+AGG + chr5.1:18002180-18002199 MS.gene72871:CDS 30.0%
!! ACATTAGTTTGCGTAAAGAA+TGG + chr5.1:18001811-18001830 MS.gene72871:CDS 30.0%
!! AGTTTGTTGTTAGGTATTGT+TGG + chr5.1:18001420-18001439 MS.gene72871:CDS 30.0%
!! TTCTAAAGCAGATTCAATGA+AGG + chr5.1:18002676-18002695 MS.gene72871:CDS 30.0%
!! TTTTAGAAAGATGGGATTTC+AGG + chr5.1:18001866-18001885 MS.gene72871:CDS 30.0%
!! TTTTAGAAGCTCATGGAATA+AGG + chr5.1:18002607-18002626 MS.gene72871:CDS 30.0%
!!! CTTTTTCAATCAGAAGTTTC+GGG + chr5.1:18002709-18002728 MS.gene72871:CDS 30.0%
!!! GCTTTTTCAATCAGAAGTTT+CGG + chr5.1:18002708-18002727 MS.gene72871:CDS 30.0%
!!! TAACCAGTTGTTTTTGTTAG+AGG + chr5.1:18002916-18002935 MS.gene72871:CDS 30.0%
!!! TGTTTTTTAGAGGTTTGTGA+TGG + chr5.1:18002008-18002027 MS.gene72871:CDS 30.0%
AACCAACGAATCAGTAAACA+AGG - chr5.1:18002156-18002175 None:intergenic 35.0%
AATTCAGTGTGGATTTGAAG+TGG + chr5.1:18001347-18001366 MS.gene72871:CDS 35.0%
ACAAAATCCATCATCCCAAA+AGG - chr5.1:18002558-18002577 None:intergenic 35.0%
AGCTAAGTCACAAATATACG+AGG + chr5.1:18002469-18002488 MS.gene72871:CDS 35.0%
AGGATCAATTAGGATTCAGT+TGG + chr5.1:18002955-18002974 MS.gene72871:CDS 35.0%
AGGATTACATGATTGGAAGA+TGG + chr5.1:18001886-18001905 MS.gene72871:CDS 35.0%
ATGTTTATGGAGAAGGTGAA+AGG + chr5.1:18001657-18001676 MS.gene72871:CDS 35.0%
CATCCTCTAACAAAAACAAC+TGG - chr5.1:18002922-18002941 None:intergenic 35.0%
CGAGATGAAAATACTAATGG+TGG + chr5.1:18001564-18001583 MS.gene72871:CDS 35.0%
GGATTTCAGGATTACATGAT+TGG + chr5.1:18001879-18001898 MS.gene72871:CDS 35.0%
TAACAAAACCGCGAAATTGA+TGG + chr5.1:18001752-18001771 MS.gene72871:CDS 35.0%
TATGTGGAATTCAGTCAACA+TGG + chr5.1:18002735-18002754 MS.gene72871:CDS 35.0%
TCTTCCTTCAACCATCTATT+TGG + chr5.1:18001075-18001094 MS.gene72871:CDS 35.0%
! AGTACCAACTTGAAACCTTT+TGG + chr5.1:18002540-18002559 MS.gene72871:CDS 35.0%
! GCAATGAAGTTTTCATATGC+TGG - chr5.1:18002821-18002840 None:intergenic 35.0%
! GTACCAACTTGAAACCTTTT+GGG + chr5.1:18002541-18002560 MS.gene72871:CDS 35.0%
! TAGTTTGCGTAAAGAATGGT+TGG + chr5.1:18001815-18001834 MS.gene72871:CDS 35.0%
!! ATCCTTGTTTACTGATTCGT+TGG + chr5.1:18002151-18002170 MS.gene72871:CDS 35.0%
!! TGCTTTTGTTTGCAACTACA+TGG + chr5.1:18001157-18001176 MS.gene72871:CDS 35.0%
!!! TCAATTTCGCGGTTTTGTTA+AGG - chr5.1:18001752-18001771 None:intergenic 35.0%
AGGCGATTGATTGTTTCATC+CGG - chr5.1:18001732-18001751 None:intergenic 40.0%
ATTGATTGTTTCATCCGGCA+CGG - chr5.1:18001727-18001746 None:intergenic 40.0%
GATAAGACAGTAGCTGTAAC+AGG - chr5.1:18001448-18001467 None:intergenic 40.0%
GGCTGATGCATAAAAAGGTA+TGG + chr5.1:18000998-18001017 MS.gene72871:CDS 40.0%
TCTTCGGTTCAAAGCTCATT+CGG + chr5.1:18001194-18001213 MS.gene72871:CDS 40.0%
TTGTCGAGACAAATTCAGTG+TGG + chr5.1:18001336-18001355 MS.gene72871:CDS 40.0%
! CAAAGCTCATTCGGCATTTT+TGG + chr5.1:18001203-18001222 MS.gene72871:CDS 40.0%
! CATCCCAAAAGGTTTCAAGT+TGG - chr5.1:18002547-18002566 None:intergenic 40.0%
! CTTCATAATTGATTCCGTGC+CGG + chr5.1:18001710-18001729 MS.gene72871:CDS 40.0%
! GAGGATGTTGATTGTGTAAG+AGG + chr5.1:18002935-18002954 MS.gene72871:CDS 40.0%
! GCTAGGTTGCATGATTTTCA+CGG + chr5.1:18002839-18002858 MS.gene72871:CDS 40.0%
! GGATTTGCTTCATCTGTTGT+TGG + chr5.1:18001030-18001049 MS.gene72871:CDS 40.0%
! TGGCAGCAACATGTTTTCTA+AGG - chr5.1:18002801-18002820 None:intergenic 40.0%
! TTTCTGGTCAAGGAAGAACT+TGG + chr5.1:18002340-18002359 MS.gene72871:CDS 40.0%
!! GTGTTTTTGACGAGCAACTA+AGG + chr5.1:18002759-18002778 MS.gene72871:CDS 40.0%
!!! CTTGAAACCTTTTGGGATGA+TGG + chr5.1:18002548-18002567 MS.gene72871:CDS 40.0%
ACGCAAGAAACTCAGTGTCT+TGG + chr5.1:18001501-18001520 MS.gene72871:CDS 45.0%
ACTCCATCAGCAACAACCAA+AGG - chr5.1:18002386-18002405 None:intergenic 45.0%
AGCATCCACCATCAATTTCG+CGG - chr5.1:18001763-18001782 None:intergenic 45.0%
CAAAACCGCGAAATTGATGG+TGG + chr5.1:18001755-18001774 MS.gene72871:CDS 45.0%
CAACAATCCAACTCTGCATC+GGG - chr5.1:18002263-18002282 None:intergenic 45.0%
CAGAAGTTTCGGGAGATATG+TGG + chr5.1:18002719-18002738 MS.gene72871:CDS 45.0%
CCAACAATCCAACTCTGCAT+CGG - chr5.1:18002264-18002283 None:intergenic 45.0%
CCACTCTCATCCAAATTCAG+AGG + chr5.1:18000974-18000993 MS.gene72871:CDS 45.0%
CCTCTGAATTTGGATGAGAG+TGG - chr5.1:18000977-18000996 None:intergenic 45.0%
CGATGCAGAGTTGGATTGTT+GGG + chr5.1:18002262-18002281 MS.gene72871:CDS 45.0%
CTCCATCAGCAACAACCAAA+GGG - chr5.1:18002385-18002404 None:intergenic 45.0%
CTCTCATCCAAATTCAGAGG+TGG + chr5.1:18000977-18000996 MS.gene72871:CDS 45.0%
GAAAGCCAAAACGATGTAGC+CGG - chr5.1:18002324-18002343 None:intergenic 45.0%
GAGGTGGCTGATGCATAAAA+AGG + chr5.1:18000993-18001012 MS.gene72871:CDS 45.0%
GCTAAGTGACATGATCGCAA+AGG - chr5.1:18001316-18001335 None:intergenic 45.0%
GGCAACATTCGACAAGTCTT+CGG + chr5.1:18001178-18001197 MS.gene72871:CDS 45.0%
TACCCTTTGGTTGTTGCTGA+TGG + chr5.1:18002380-18002399 MS.gene72871:CDS 45.0%
TGAATCAAAGTCCTTCAGCG+TGG + chr5.1:18002069-18002088 MS.gene72871:CDS 45.0%
TTAAACAAACGCCACGCTGA+AGG - chr5.1:18002083-18002102 None:intergenic 45.0%
TTGGTTGTTGCTGATGGAGT+AGG + chr5.1:18002386-18002405 MS.gene72871:CDS 45.0%
!! CGAAATTGATGGTGGATGCT+GGG + chr5.1:18001763-18001782 MS.gene72871:CDS 45.0%
!!! GCTACATCGTTTTGGCTTTC+TGG + chr5.1:18002324-18002343 MS.gene72871:CDS 45.0%
!!! TCGTTTTGGCTTTCTGGTCA+AGG + chr5.1:18002330-18002349 MS.gene72871:CDS 45.0%
!! TTGTTAATAAATAAATTATT+AGG + chr5.1:18001843-18001862 MS.gene72871:CDS 5.0%
CCGATGCAGAGTTGGATTGT+TGG + chr5.1:18002261-18002280 MS.gene72871:CDS 50.0%
CCTATGACATGTGAAGCCAC+CGG + chr5.1:18002302-18002321 MS.gene72871:CDS 50.0%
GAGTTGGATTGTTGGGCTGA+TGG + chr5.1:18002269-18002288 MS.gene72871:CDS 50.0%
GCATCAGCCACCTCTGAATT+TGG - chr5.1:18000987-18001006 None:intergenic 50.0%
GGTGGATGCTGGGTTTGATA+AGG + chr5.1:18001773-18001792 MS.gene72871:CDS 50.0%
TCTTACACCCGATGCAGAGT+TGG + chr5.1:18002253-18002272 MS.gene72871:CDS 50.0%
TTGGATTGTTGGGCTGATGG+TGG + chr5.1:18002272-18002291 MS.gene72871:CDS 50.0%
TTGTAGAGTCGCCGTTCACT+TGG - chr5.1:18001948-18001967 None:intergenic 50.0%
!! GCGAAATTGATGGTGGATGC+TGG + chr5.1:18001762-18001781 MS.gene72871:CDS 50.0%
AGCCAAAACGATGTAGCCGG+TGG - chr5.1:18002321-18002340 None:intergenic 55.0%
CCGGTGGCTTCACATGTCAT+AGG - chr5.1:18002305-18002324 None:intergenic 55.0%
!! AGCCACCGGCTACATCGTTT+TGG + chr5.1:18002316-18002335 MS.gene72871:CDS 55.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 18000964 18002985 18000964 ID=MS.gene72871
chr5.1 mRNA 18000964 18002985 18000964 ID=MS.gene72871.t1;Parent=MS.gene72871
chr5.1 exon 18000964 18002985 18000964 ID=MS.gene72871.t1.exon1;Parent=MS.gene72871.t1
chr5.1 CDS 18000964 18002985 18000964 ID=cds.MS.gene72871.t1;Parent=MS.gene72871.t1
Gene Sequence

>MS.gene72871

ATGAAAGAAGCCACTCTCATCCAAATTCAGAGGTGGCTGATGCATAAAAAGGTATGGAGATTTGTTGGATTTGCTTCATCTGTTGTTGGATTGCTTTGTTATGCTCTAAGCTCTTCCTTCAACCATCTATTTGGAAATTGGAATTTGTTGAAGATATTTCTTTACACAGTTTTCAGTTTCATCATTTGTCTAATGCTTTTGTTTGCAACTACATGGCAACATTCGACAAGTCTTCGGTTCAAAGCTCATTCGGCATTTTTGGTATTGACAATTACTTCTGTCTATTCCTTTTTCTCTGATAAAATTATGAATGGAAAACCAGATGCATATAGTCTTTTTTCATGTGCTGCCTTTGCGATCATGTCACTTAGCTTGTCGAGACAAATTCAGTGTGGATTTGAAGTGGACCTTATGTACTTTTATCTAGGATGTTTAATCGTACAACTCATGAAGATTAGTTTGTTGTTAGGTATTGTTGGAGCCTGTTACAGCTACTGTCTTATCATTATTCGGTCTTCTTTCTCTTCGTTAATTGTTACGCAAGAAACTCAGTGTCTTGGACTCGAAGAACAACGAGTAGTCATTCAAGTTGATTCACAACGAGATGAAAATACTAATGGTGGTAGCAGCATCATGCAACAATTTATGACTTGTATGAATGATCTTAAGCAGAATGATTCAAACGTTAACAAGATGTTTATGGAGAAGGTGAAAGGTAACTATAAATTGGTGGTGACTGATCACAACTTCATAATTGATTCCGTGCCGGATGAAACAATCAATCGCCTTAACAAAACCGCGAAATTGATGGTGGATGCTGGGTTTGATAAGGAGTGCTTTGACTTGTACATTAGTTTGCGTAAAGAATGGTTGGAAGATTTGTTAATAAATAAATTATTAGGTTTTAGAAAGATGGGATTTCAGGATTACATGATTGGAAGATGGATTAAAGCTTCTAAGGTTGCTCTTAAAATACTATTTCCAAGTGAACGGCGACTCTACAATTGTGTCTTCTCCGAATCAAACTCTGAATTATATGATCTTTGTTTTTTAGAGGTTTGTGATGGAGCGACGTGTCAACTTTTGAATTTTGCAGATTCATTTGTGAATCAAAGTCCTTCAGCGTGGCGTTTGTTTAAAATTCTTGACTTGTTTGAGACGATGTGTGATCTCATTCCCGAATTTGAATCCTTGTTTACTGATTCGTTGGTTAACAAAGCACTGAAATTCAAGAATAGGTTGGGTGAAGTATGTAGAAAATTTTTCATGGAATTTGGAAAATTGATATTTCTTACACCCGATGCAGAGTTGGATTGTTGGGCTGATGGTGGAGTTCATCCTATGACATGTGAAGCCACCGGCTACATCGTTTTGGCTTTCTGGTCAAGGAAGAACTTGGAGAAAATCTTACAAGAATACCCTTTGGTTGTTGCTGATGGAGTAGGAACATCTTTATTCTATTCACAGATAGAGCTTATAATGGAATTTTTTCAGACAAATTTGGAAGCTAAGTCACAAATATACGAGGACCCTGCTTTGCGTTATTTTTTCATGATGAATAATCTAAGTCACATTAAGTACCAACTTGAAACCTTTTGGGATGATGGATTTTGTAAAAACAAGGAGCAATATTGTGAACTCTATTTTAGAAGCTCATGGAATAAGGTGATAGATTTTTTGAAGATTGATATCGACGAGTCAATGACGCCAAATTCTAAAGCAGATTCAATGAAGGACAATCTCAGCTTTTTCAATCAGAAGTTTCGGGAGATATGTGGAATTCAGTCAACATGGCGTGTTTTTGACGAGCAACTAAGGAAACAAATAATAATTTCCTTAGAAAACATGTTGCTGCCAGCATATGAAAACTTCATTGCTAGGTTGCATGATTTTCACGGTAAAAATTTGGATGAGTATATAGAGTATGGAATGTCTGATATTCAAGATCGACTTAACCAGTTGTTTTTGTTAGAGGATGTTGATTGTGTAAGAGGATCAATTAGGATTCAGTTGGTTAGTTAG
Protein sequence

>MS.gene72871.t1

MKEATLIQIQRWLMHKKVWRFVGFASSVVGLLCYALSSSFNHLFGNWNLLKIFLYTVFSFIICLMLLFATTWQHSTSLRFKAHSAFLVLTITSVYSFFSDKIMNGKPDAYSLFSCAAFAIMSLSLSRQIQCGFEVDLMYFYLGCLIVQLMKISLLLGIVGACYSYCLIIIRSSFSSLIVTQETQCLGLEEQRVVIQVDSQRDENTNGGSSIMQQFMTCMNDLKQNDSNVNKMFMEKVKGNYKLVVTDHNFIIDSVPDETINRLNKTAKLMVDAGFDKECFDLYISLRKEWLEDLLINKLLGFRKMGFQDYMIGRWIKASKVALKILFPSERRLYNCVFSESNSELYDLCFLEVCDGATCQLLNFADSFVNQSPSAWRLFKILDLFETMCDLIPEFESLFTDSLVNKALKFKNRLGEVCRKFFMEFGKLIFLTPDAELDCWADGGVHPMTCEATGYIVLAFWSRKNLEKILQEYPLVVADGVGTSLFYSQIELIMEFFQTNLEAKSQIYEDPALRYFFMMNNLSHIKYQLETFWDDGFCKNKEQYCELYFRSSWNKVIDFLKIDIDESMTPNSKADSMKDNLSFFNQKFREICGIQSTWRVFDEQLRKQIIISLENMLLPAYENFIARLHDFHGKNLDEYIEYGMSDIQDRLNQLFLLEDVDCVRGSIRIQLVS