Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73127.t1 | XP_013459898.1 | 96.4 | 140 | 4 | 1 | 1 | 140 | 1 | 139 | 1.40E-39 | 172.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73127.t1 | A0A072UVU4 | 96.4 | 140 | 4 | 1 | 1 | 140 | 1 | 139 | 1.0e-39 | 172.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052190 | MS.gene73127 | 0.802777 | 4.78E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73127.t1 | MTR_3g054230 | 95.714 | 140 | 5 | 1 | 1 | 140 | 1 | 139 | 3.94e-82 | 241 |
| MS.gene73127.t1 | MTR_2g025490 | 44.318 | 176 | 70 | 6 | 1 | 149 | 1 | 175 | 5.92e-33 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73127.t1 | AT4G22320 | 45.736 | 129 | 36 | 5 | 1 | 97 | 1 | 127 | 7.13e-26 | 100 |
| MS.gene73127.t1 | AT4G22320 | 45.736 | 129 | 36 | 5 | 1 | 97 | 1 | 127 | 7.52e-26 | 100 |
| MS.gene73127.t1 | AT5G55210 | 47.154 | 123 | 49 | 5 | 1 | 108 | 1 | 122 | 9.90e-19 | 79.7 |
Find 42 sgRNAs with CRISPR-Local
Find 254 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATGGTCCTGTTCGAAAA+TGG | 0.277645 | 3.4:-50875604 | MS.gene73127:CDS |
| TGCGCTGGAAGAACAGAAAA+AGG | 0.298246 | 3.4:-50873800 | MS.gene73127:CDS |
| TTCGAAAATGGGAGAAGAAA+TGG | 0.334347 | 3.4:-50875592 | MS.gene73127:CDS |
| AGTATAACGAAACTTCCTTC+TGG | 0.349574 | 3.4:+50875430 | None:intergenic |
| CGGCAATGCAGAGCGGCTAT+TGG | 0.421548 | 3.4:-50872299 | MS.gene73127:CDS |
| CTCGTTTACTTCTTCGTCGT+TGG | 0.428526 | 3.4:-50875502 | MS.gene73127:CDS |
| CAATGGTCCTGTTCGAAAAT+GGG | 0.433206 | 3.4:-50875603 | MS.gene73127:CDS |
| GGTGCACCTGCGGTGTTCAA+TGG | 0.447459 | 3.4:-50875620 | MS.gene73127:CDS |
| GCAGAAGAAGAGTTTGTAAC+CGG | 0.458649 | 3.4:+50875476 | None:intergenic |
| GTATAACGAAACTTCCTTCT+GGG | 0.477833 | 3.4:+50875431 | None:intergenic |
| TCGAAAATGGGAGAAGAAAT+GGG | 0.477944 | 3.4:-50875591 | MS.gene73127:CDS |
| CTTCCTTCTGGGTGGCTCAT+CGG | 0.478780 | 3.4:+50875442 | None:intergenic |
| GACAGTGGGTTCTACGAGGT+TGG | 0.483338 | 3.4:-50875663 | MS.gene73127:CDS |
| CGGCTATTGGCTGCCACTGT+GGG | 0.485201 | 3.4:-50872286 | MS.gene73127:CDS |
| CCTGTCGTGTCACGTATTAC+AGG | 0.488354 | 3.4:-50872262 | MS.gene73127:CDS |
| TTCTTGTTGTCAAAGGAAGA+AGG | 0.491322 | 3.4:+50875557 | None:intergenic |
| ACAGTGGGTTCTACGAGGTT+GGG | 0.497439 | 3.4:-50875662 | MS.gene73127:CDS |
| ACTTCTTCGTCGTTGGACTC+CGG | 0.505495 | 3.4:-50875495 | MS.gene73127:CDS |
| CATGATACAGATTGCTGCGC+TGG | 0.541228 | 3.4:-50873815 | MS.gene73127:intron |
| TTGTCTGTCTAGCTGTCACT+TGG | 0.543954 | 3.4:+50873731 | None:intergenic |
| GCGGCTATTGGCTGCCACTG+TGG | 0.564424 | 3.4:-50872287 | MS.gene73127:CDS |
| TACAAACTCTTCTTCTGCTG+AGG | 0.566729 | 3.4:-50875471 | MS.gene73127:CDS |
| CCTGTAATACGTGACACGAC+AGG | 0.569056 | 3.4:+50872262 | None:intergenic |
| GCTTACGAGATGCGCTGCGG+CGG | 0.569962 | 3.4:+50872189 | None:intergenic |
| GCTCTGCATTGCCGCGATCG+CGG | 0.577025 | 3.4:+50872308 | None:intergenic |
| GGGAAATAGTGCCGCGATCG+CGG | 0.590157 | 3.4:-50872319 | MS.gene73127:intron |
| GGAAGAGCATCTTCACGCTA+CGG | 0.605877 | 3.4:-50875641 | MS.gene73127:CDS |
| TTCACGCTACGGTGCACCTG+CGG | 0.611469 | 3.4:-50875630 | MS.gene73127:CDS |
| ACAGGACCATTGAACACCGC+AGG | 0.617703 | 3.4:+50875614 | None:intergenic |
| ATGTGAATCATGAGGTGCAT+GGG | 0.621369 | 3.4:-50873708 | MS.gene73127:CDS |
| TTTCCGATGAGCCACCCAGA+AGG | 0.631151 | 3.4:-50875445 | MS.gene73127:CDS |
| CGCAACACAATGGAGACAGT+GGG | 0.631929 | 3.4:-50875677 | None:intergenic |
| ACAGACAAATGTGAATCATG+AGG | 0.659552 | 3.4:-50873716 | MS.gene73127:CDS |
| GCGATCGCGGCAATGCAGAG+CGG | 0.660541 | 3.4:-50872306 | MS.gene73127:CDS |
| ACGCAACACAATGGAGACAG+TGG | 0.663150 | 3.4:-50875678 | None:intergenic |
| TTACAGAGCAGACAGCGTGT+TGG | 0.673212 | 3.4:-50872219 | MS.gene73127:CDS |
| AATGTGAATCATGAGGTGCA+TGG | 0.681852 | 3.4:-50873709 | MS.gene73127:CDS |
| CGTGTCACGTATTACAGGAG+CGG | 0.686085 | 3.4:-50872257 | MS.gene73127:CDS |
| ATCGCTTACGAGATGCGCTG+CGG | 0.688071 | 3.4:+50872186 | None:intergenic |
| TAACGAAACTTCCTTCTGGG+TGG | 0.697431 | 3.4:+50875434 | None:intergenic |
| TGGAGACAGTGGGTTCTACG+AGG | 0.736463 | 3.4:-50875667 | MS.gene73127:CDS |
| TGACACGACAGGTCCCACAG+TGG | 0.800281 | 3.4:+50872273 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTCTATCAAAATATAAA+TGG | - | chr3.4:50874786-50874805 | MS.gene73127:intron | 10.0% |
| !! | TATTTATAATTCATAAAATG+TGG | + | chr3.4:50875146-50875165 | None:intergenic | 10.0% |
| !!! | TAAGTTTTAAAAGTAAAAAA+CGG | + | chr3.4:50874501-50874520 | None:intergenic | 10.0% |
| !! | TGTATTAGATTATGAAAAAA+AGG | - | chr3.4:50875024-50875043 | MS.gene73127:intron | 15.0% |
| !!! | AAAAATTGATTTGAATGAAT+TGG | + | chr3.4:50873336-50873355 | None:intergenic | 15.0% |
| !!! | AAAAGCCAATTTTAAAATTT+GGG | - | chr3.4:50875406-50875425 | MS.gene73127:intron | 15.0% |
| !!! | TATATCCCAAATTTTAAAAT+TGG | + | chr3.4:50875414-50875433 | None:intergenic | 15.0% |
| !!! | TTGTCTTTTATTTATGTTTT+AGG | - | chr3.4:50872440-50872459 | MS.gene73127:intron | 15.0% |
| !!! | TTTCATATGTTTTTCTTTTT+TGG | - | chr3.4:50873569-50873588 | MS.gene73127:intron | 15.0% |
| !! | AATTATGATATTGTTTGACT+CGG | - | chr3.4:50873620-50873639 | MS.gene73127:intron | 20.0% |
| !! | ACAGAAATTAACTTATATTG+CGG | + | chr3.4:50874974-50874993 | None:intergenic | 20.0% |
| !! | GAAAATGAAGTAGATATTTA+GGG | - | chr3.4:50872479-50872498 | MS.gene73127:intron | 20.0% |
| !! | TAACATTGAGCATTAATTAT+TGG | - | chr3.4:50875234-50875253 | MS.gene73127:intron | 20.0% |
| !! | TTTAATGTAATCATGTGTAT+CGG | + | chr3.4:50872969-50872988 | None:intergenic | 20.0% |
| !!! | ATGAAGAAAATTTTCAATGA+GGG | + | chr3.4:50873432-50873451 | None:intergenic | 20.0% |
| !!! | GAAAAGCCAATTTTAAAATT+TGG | - | chr3.4:50875405-50875424 | MS.gene73127:intron | 20.0% |
| !!! | TTGTTGTCTCTTTAATTTTT+TGG | - | chr3.4:50873483-50873502 | MS.gene73127:intron | 20.0% |
| ! | AAGAAATGAGAACTTAGAAA+TGG | - | chr3.4:50875316-50875335 | MS.gene73127:intron | 25.0% |
| ! | AATAAAAGACAATGACATAC+AGG | + | chr3.4:50872432-50872451 | None:intergenic | 25.0% |
| ! | AGTTTGTCTTCAATTCATTA+GGG | - | chr3.4:50873520-50873539 | MS.gene73127:intron | 25.0% |
| ! | ATTATGATATTGTTTGACTC+GGG | - | chr3.4:50873621-50873640 | MS.gene73127:intron | 25.0% |
| ! | GGAAAATGAAGTAGATATTT+AGG | - | chr3.4:50872478-50872497 | MS.gene73127:intron | 25.0% |
| ! | GTTATGACATCAAAAAAACT+TGG | + | chr3.4:50874472-50874491 | None:intergenic | 25.0% |
| ! | TATAATGTGATAATCACCAA+AGG | + | chr3.4:50875062-50875081 | None:intergenic | 25.0% |
| ! | TCTTGTGTAAAAAAAGAAGA+AGG | + | chr3.4:50872866-50872885 | None:intergenic | 25.0% |
| ! | TGTAAAAAAAGAAGAAGGTA+AGG | + | chr3.4:50872861-50872880 | None:intergenic | 25.0% |
| ! | TTCTAAGTTCTCATTTCTTA+AGG | + | chr3.4:50875315-50875334 | None:intergenic | 25.0% |
| ! | TTGAGTGTAAAAATCATGTT+TGG | + | chr3.4:50873283-50873302 | None:intergenic | 25.0% |
| !! | AAGTAGATATTTAGGGTTTA+GGG | - | chr3.4:50872486-50872505 | MS.gene73127:intron | 25.0% |
| !! | ACAATAAAACAGTTTGAAAC+AGG | + | chr3.4:50874605-50874624 | None:intergenic | 25.0% |
| !! | ACTATGTTTGGTTTAAATTG+TGG | - | chr3.4:50873153-50873172 | MS.gene73127:intron | 25.0% |
| !! | ATTTAAGATCAGTTTGAAAC+AGG | + | chr3.4:50874742-50874761 | None:intergenic | 25.0% |
| !! | ATTTTATCAACCATCTCATT+TGG | - | chr3.4:50873939-50873958 | MS.gene73127:intron | 25.0% |
| !! | CAATAAAACAGTTTGAAACA+GGG | + | chr3.4:50874604-50874623 | None:intergenic | 25.0% |
| !! | CATGAAGAAAATTTTCAATG+AGG | + | chr3.4:50873433-50873452 | None:intergenic | 25.0% |
| !! | TAGTTTGTCTTCAATTCATT+AGG | - | chr3.4:50873519-50873538 | MS.gene73127:intron | 25.0% |
| !! | TTTAAGATCAGTTTGAAACA+GGG | + | chr3.4:50874741-50874760 | None:intergenic | 25.0% |
| !! | TTTGGTGATTATCACATTAT+AGG | - | chr3.4:50875061-50875080 | MS.gene73127:intron | 25.0% |
| !! | TTTTCACAAATTGTCTTGAT+CGG | + | chr3.4:50873903-50873922 | None:intergenic | 25.0% |
| !!! | AGAATTGATTTTGACATGTT+TGG | - | chr3.4:50873202-50873221 | MS.gene73127:intron | 25.0% |
| !!! | ATTGATTTTAACTTGAAGCT+AGG | - | chr3.4:50873240-50873259 | MS.gene73127:intron | 25.0% |
| !!! | GAATATGAATGAAGTTTTAG+AGG | - | chr3.4:50874156-50874175 | MS.gene73127:intron | 25.0% |
| !!! | GAATTGGTTTTAGTTAAAAG+TGG | + | chr3.4:50873320-50873339 | None:intergenic | 25.0% |
| !!! | GTTGGCTTTAATTTTTTGTT+GGG | - | chr3.4:50872558-50872577 | MS.gene73127:intron | 25.0% |
| !!! | TGTTGGCTTTAATTTTTTGT+TGG | - | chr3.4:50872557-50872576 | MS.gene73127:intron | 25.0% |
| !!! | TTAATTTTTTGTTGGGTTTG+TGG | - | chr3.4:50872565-50872584 | MS.gene73127:intron | 25.0% |
| !!! | TTCTTCTTTTTTTACACAAG+AGG | - | chr3.4:50872865-50872884 | MS.gene73127:intron | 25.0% |
| !!! | TTTAGGTTTTTTTTGTTCTG+TGG | - | chr3.4:50872457-50872476 | MS.gene73127:intron | 25.0% |
| AGGATTGTGTAAAATCAGTT+TGG | - | chr3.4:50875439-50875458 | MS.gene73127:CDS | 30.0% | |
| AGTGTCTGATACACATAAAA+AGG | - | chr3.4:50872753-50872772 | MS.gene73127:intron | 30.0% | |
| ATGAGAACTTAGAAATGGTT+AGG | - | chr3.4:50875321-50875340 | MS.gene73127:intron | 30.0% | |
| ATGATTGTTATGTGAACAAG+AGG | - | chr3.4:50872602-50872621 | MS.gene73127:intron | 30.0% | |
| ATGCTTTCTTATTGATGTAC+TGG | - | chr3.4:50874654-50874673 | MS.gene73127:intron | 30.0% | |
| ATGGAGAAAATTGATTGTAG+AGG | - | chr3.4:50873176-50873195 | MS.gene73127:intron | 30.0% | |
| CAACAAGAAGAAAAACAACA+AGG | - | chr3.4:50872293-50872312 | MS.gene73127:CDS | 30.0% | |
| CAACGTATACATATCTGAAT+TGG | + | chr3.4:50875358-50875377 | None:intergenic | 30.0% | |
| CACTATACATATACAACACA+TGG | + | chr3.4:50872737-50872756 | None:intergenic | 30.0% | |
| GGATTGTGTAAAATCAGTTT+GGG | - | chr3.4:50875440-50875459 | MS.gene73127:CDS | 30.0% | |
| GGGATAAAAAGTAAGCAATA+TGG | - | chr3.4:50875460-50875479 | MS.gene73127:CDS | 30.0% | |
| GTGTCTGATACACATAAAAA+GGG | - | chr3.4:50872754-50872773 | MS.gene73127:intron | 30.0% | |
| TATTGTTGTGATGTGTTTGT+TGG | - | chr3.4:50872540-50872559 | MS.gene73127:intron | 30.0% | |
| TGATTGTTATGTGAACAAGA+GGG | - | chr3.4:50872603-50872622 | MS.gene73127:intron | 30.0% | |
| TTAATGCATGCTAAATGCAA+GGG | - | chr3.4:50875178-50875197 | MS.gene73127:intron | 30.0% | |
| TTGATATATCTGCAAAATGC+AGG | - | chr3.4:50873065-50873084 | MS.gene73127:intron | 30.0% | |
| TTTAATGCATGCTAAATGCA+AGG | - | chr3.4:50875177-50875196 | MS.gene73127:intron | 30.0% | |
| TTTCACAAATTGTCTTGATC+GGG | + | chr3.4:50873902-50873921 | None:intergenic | 30.0% | |
| ! | AAAATTTGGGATATAAGACG+AGG | - | chr3.4:50875419-50875438 | MS.gene73127:intron | 30.0% |
| ! | GAAGTAGATATTTAGGGTTT+AGG | - | chr3.4:50872485-50872504 | MS.gene73127:intron | 30.0% |
| ! | TGTTTGGTTTAAATTGTGGA+TGG | - | chr3.4:50873157-50873176 | MS.gene73127:intron | 30.0% |
| ! | TTGGATTGACATTTGATAGT+AGG | + | chr3.4:50874917-50874936 | None:intergenic | 30.0% |
| !! | ACTGTTTTATTGTGAACTGA+AGG | - | chr3.4:50874612-50874631 | MS.gene73127:intron | 30.0% |
| !! | GTTTTTCTTCTTGTTGTCAA+AGG | + | chr3.4:50872289-50872308 | None:intergenic | 30.0% |
| !!! | AACACATAAACTGCTTTTTG+AGG | - | chr3.4:50873371-50873390 | MS.gene73127:intron | 30.0% |
| !!! | AGGGTTTAGGGTTTTATTTT+GGG | - | chr3.4:50872498-50872517 | MS.gene73127:intron | 30.0% |
| !!! | TAACGTGATTTTTTCGTTTC+TGG | - | chr3.4:50874193-50874212 | MS.gene73127:intron | 30.0% |
| !!! | TAGGGTTTAGGGTTTTATTT+TGG | - | chr3.4:50872497-50872516 | MS.gene73127:intron | 30.0% |
| !!! | TGAAGTTTTAGAGGACATAA+AGG | - | chr3.4:50874165-50874184 | MS.gene73127:intron | 30.0% |
| !!! | TTTTTCGTTTCTGGTTTGAA+TGG | - | chr3.4:50874202-50874221 | MS.gene73127:intron | 30.0% |
| AAACAGGGATGTATAGGTAT+GGG | + | chr3.4:50874726-50874745 | None:intergenic | 35.0% | |
| AAGGCAAGAACATATTCCTT+TGG | - | chr3.4:50875043-50875062 | MS.gene73127:intron | 35.0% | |
| AAGTTAATTTCTGTGTTGCC+AGG | - | chr3.4:50874980-50874999 | MS.gene73127:intron | 35.0% | |
| ACAGACAAATGTGAATCATG+AGG | - | chr3.4:50874120-50874139 | MS.gene73127:intron | 35.0% | |
| ACGACACAGATATATTCACT+TGG | + | chr3.4:50874936-50874955 | None:intergenic | 35.0% | |
| AGTATAACGAAACTTCCTTC+TGG | + | chr3.4:50872409-50872428 | None:intergenic | 35.0% | |
| ATGAGCTATGAAGCAATACA+CGG | + | chr3.4:50873030-50873049 | None:intergenic | 35.0% | |
| CTGCAAAATGCAGGAAAATT+CGG | - | chr3.4:50873074-50873093 | MS.gene73127:intron | 35.0% | |
| GAAAGTGAGAACAAGACTTT+AGG | - | chr3.4:50874261-50874280 | MS.gene73127:intron | 35.0% | |
| GAGAAAATTGATTGTAGAGG+TGG | - | chr3.4:50873179-50873198 | MS.gene73127:intron | 35.0% | |
| GTATAACGAAACTTCCTTCT+GGG | + | chr3.4:50872408-50872427 | None:intergenic | 35.0% | |
| GTATATGTCAGTGTTGTAAC+AGG | - | chr3.4:50873761-50873780 | MS.gene73127:CDS | 35.0% | |
| TATAAAGCACATATGCTCCT+TGG | - | chr3.4:50872700-50872719 | MS.gene73127:intron | 35.0% | |
| TCGAAAATGGGAGAAGAAAT+GGG | - | chr3.4:50872245-50872264 | MS.gene73127:CDS | 35.0% | |
| TCTAATACAAACTGATAGCC+AGG | + | chr3.4:50875013-50875032 | None:intergenic | 35.0% | |
| TTCGAAAATGGGAGAAGAAA+TGG | - | chr3.4:50872244-50872263 | MS.gene73127:CDS | 35.0% | |
| TTCTCAAATTAGACATGTCC+TGG | - | chr3.4:50873001-50873020 | MS.gene73127:intron | 35.0% | |
| TTGTCTTCAATTCATTAGGG+TGG | - | chr3.4:50873523-50873542 | MS.gene73127:intron | 35.0% | |
| TTTCTTCATGCCTCTTTAGT+GGG | - | chr3.4:50873443-50873462 | MS.gene73127:intron | 35.0% | |
| ! | AAAAGTACATATCGCATACC+CGG | - | chr3.4:50874693-50874712 | MS.gene73127:intron | 35.0% |
| ! | AAAAGTATGTATCGCATACC+CGG | - | chr3.4:50874556-50874575 | MS.gene73127:intron | 35.0% |
| ! | AGTTTATGTGTTTAGTTCCG+CGG | + | chr3.4:50873363-50873382 | None:intergenic | 35.0% |
| ! | AGTTTGAAACAGGGATGTAT+AGG | + | chr3.4:50874732-50874751 | None:intergenic | 35.0% |
| ! | ATGCCTTCAATCTAAAGTGT+CGG | + | chr3.4:50873723-50873742 | None:intergenic | 35.0% |
| ! | CAAATCAATTTTTGTACCCG+CGG | - | chr3.4:50873343-50873362 | MS.gene73127:intron | 35.0% |
| ! | CAAGCTTTAGTCCATTAGAT+GGG | + | chr3.4:50873655-50873674 | None:intergenic | 35.0% |
| ! | GTGCGATTTAGAACTATGTT+TGG | - | chr3.4:50873141-50873160 | MS.gene73127:intron | 35.0% |
| ! | TTAGTTCGTACATGGTGTTA+AGG | + | chr3.4:50875275-50875294 | None:intergenic | 35.0% |
| ! | TTCTTGTTGTCAAAGGAAGA+AGG | + | chr3.4:50872282-50872301 | None:intergenic | 35.0% |
| ! | TTTAGTCCATTAGATGGGTT+GGG | + | chr3.4:50873650-50873669 | None:intergenic | 35.0% |
| ! | TTTTCTTCATGCCTCTTTAG+TGG | - | chr3.4:50873442-50873461 | MS.gene73127:intron | 35.0% |
| !! | ATAGTTCTAAATCGCACTCA+TGG | + | chr3.4:50873138-50873157 | None:intergenic | 35.0% |
| !! | CGATTTTCAAGAGTATGAAG+CGG | - | chr3.4:50874847-50874866 | MS.gene73127:intron | 35.0% |
| !! | TGTATCATAGAAAGTACTGC+TGG | - | chr3.4:50874879-50874898 | MS.gene73127:intron | 35.0% |
| !!! | ATTTCGTGTGGTTTTGTATG+TGG | - | chr3.4:50873823-50873842 | MS.gene73127:intron | 35.0% |
| !!! | GGGTTTAGGGTTTTATTTTG+GGG | - | chr3.4:50872499-50872518 | MS.gene73127:intron | 35.0% |
| !!! | TTTCGTGTGGTTTTGTATGT+GGG | - | chr3.4:50873824-50873843 | MS.gene73127:intron | 35.0% |
| AAACGGTGAAGTACACTTAC+TGG | - | chr3.4:50874320-50874339 | MS.gene73127:intron | 40.0% | |
| AACGGTGAAGTACACTTACT+GGG | - | chr3.4:50874321-50874340 | MS.gene73127:intron | 40.0% | |
| AATGTGAATCATGAGGTGCA+TGG | - | chr3.4:50874127-50874146 | MS.gene73127:intron | 40.0% | |
| ACACCGACACTTTAGATTGA+AGG | - | chr3.4:50873717-50873736 | MS.gene73127:CDS | 40.0% | |
| ACACTTACTGGGTACATATC+CGG | - | chr3.4:50874332-50874351 | MS.gene73127:intron | 40.0% | |
| ACCGTTTACAAGAACTCATG+AGG | + | chr3.4:50874307-50874326 | None:intergenic | 40.0% | |
| AGCAGTTCTTAGTTCGTACA+TGG | + | chr3.4:50875283-50875302 | None:intergenic | 40.0% | |
| ATGTGAATCATGAGGTGCAT+GGG | - | chr3.4:50874128-50874147 | MS.gene73127:intron | 40.0% | |
| ATGTGTATCGGACACTATGA+GGG | + | chr3.4:50872957-50872976 | None:intergenic | 40.0% | |
| CAAATCCCAATTCAACCTAC+AGG | + | chr3.4:50872662-50872681 | None:intergenic | 40.0% | |
| CAATGGTCCTGTTCGAAAAT+GGG | - | chr3.4:50872233-50872252 | MS.gene73127:CDS | 40.0% | |
| CACATATGCTCCTTGGATTA+GGG | - | chr3.4:50872707-50872726 | MS.gene73127:intron | 40.0% | |
| CTCTTTAGTGGGATAAAGCT+TGG | - | chr3.4:50873454-50873473 | MS.gene73127:intron | 40.0% | |
| CTTTAGTCCATTAGATGGGT+TGG | + | chr3.4:50873651-50873670 | None:intergenic | 40.0% | |
| GAAACAGGGATGTATAGGTA+TGG | + | chr3.4:50874727-50874746 | None:intergenic | 40.0% | |
| GCAGAAGAAGAGTTTGTAAC+CGG | + | chr3.4:50872363-50872382 | None:intergenic | 40.0% | |
| GCCTCATGAGTTCTTGTAAA+CGG | - | chr3.4:50874303-50874322 | MS.gene73127:intron | 40.0% | |
| GGACTATAGGTTTCTTTACC+TGG | - | chr3.4:50873860-50873879 | MS.gene73127:intron | 40.0% | |
| GGATTTGTGGTATTAACTCG+TGG | - | chr3.4:50872675-50872694 | MS.gene73127:intron | 40.0% | |
| GGTTGTCACATTATTTCGTG+TGG | - | chr3.4:50873811-50873830 | MS.gene73127:intron | 40.0% | |
| GTATTGCAATGTATGCCTGT+AGG | - | chr3.4:50872644-50872663 | MS.gene73127:intron | 40.0% | |
| GTCAACTAGGTAGTCAATTG+CGG | - | chr3.4:50875496-50875515 | MS.gene73127:CDS | 40.0% | |
| GTCATGTGACTGAAAGGTTA+CGG | + | chr3.4:50872905-50872924 | None:intergenic | 40.0% | |
| GTGGATCAGTTAAGGACTAT+AGG | - | chr3.4:50873847-50873866 | MS.gene73127:intron | 40.0% | |
| GTTATGTGAACAAGAGGGTT+GGG | - | chr3.4:50872608-50872627 | MS.gene73127:intron | 40.0% | |
| GTTGTTGTCATGTGACTGAA+AGG | + | chr3.4:50872911-50872930 | None:intergenic | 40.0% | |
| TAAATGCAAGGGTTGTGGTA+TGG | - | chr3.4:50875189-50875208 | MS.gene73127:intron | 40.0% | |
| TACAAACTCTTCTTCTGCTG+AGG | - | chr3.4:50872365-50872384 | MS.gene73127:intron | 40.0% | |
| TACACATAAAAAGGGCAACC+CGG | - | chr3.4:50872762-50872781 | MS.gene73127:intron | 40.0% | |
| TCAACTAGGTAGTCAATTGC+GGG | - | chr3.4:50875497-50875516 | MS.gene73127:CDS | 40.0% | |
| TCAATGGTCCTGTTCGAAAA+TGG | - | chr3.4:50872232-50872251 | MS.gene73127:CDS | 40.0% | |
| TCATGTGACTGAAAGGTTAC+GGG | + | chr3.4:50872904-50872923 | None:intergenic | 40.0% | |
| TCCATTGCGAGTGAAATTCA+TGG | - | chr3.4:50874396-50874415 | MS.gene73127:intron | 40.0% | |
| TGGGTTTGTGGAATTAAGAG+AGG | - | chr3.4:50872577-50872596 | MS.gene73127:intron | 40.0% | |
| TGTCTGTGTTAGTGCTTCAT+AGG | - | chr3.4:50873790-50873809 | MS.gene73127:CDS | 40.0% | |
| TGTTATGTGAACAAGAGGGT+TGG | - | chr3.4:50872607-50872626 | MS.gene73127:intron | 40.0% | |
| TTATGTGAACAAGAGGGTTG+GGG | - | chr3.4:50872609-50872628 | MS.gene73127:intron | 40.0% | |
| TTTAGCCAGAGTTGTCAACT+AGG | - | chr3.4:50875483-50875502 | MS.gene73127:CDS | 40.0% | |
| ! | ACATATGCTCCTTGGATTAG+GGG | - | chr3.4:50872708-50872727 | MS.gene73127:intron | 40.0% |
| ! | AGTTTGAAACAGGGATGCAT+AGG | + | chr3.4:50874595-50874614 | None:intergenic | 40.0% |
| ! | CAAGCTTTATCCCACTAAAG+AGG | + | chr3.4:50873456-50873475 | None:intergenic | 40.0% |
| ! | CCAAGCTTTAGTCCATTAGA+TGG | + | chr3.4:50873656-50873675 | None:intergenic | 40.0% |
| ! | GTAGGTTGAATTGGGATTTG+TGG | - | chr3.4:50872662-50872681 | MS.gene73127:intron | 40.0% |
| ! | GTATGCCTGTAGGTTGAATT+GGG | - | chr3.4:50872654-50872673 | MS.gene73127:intron | 40.0% |
| ! | GTTTATGTGTTTAGTTCCGC+GGG | + | chr3.4:50873362-50873381 | None:intergenic | 40.0% |
| ! | TGTATGCCTGTAGGTTGAAT+TGG | - | chr3.4:50872653-50872672 | MS.gene73127:intron | 40.0% |
| ! | TTCTTCTCCCATTTTCGAAC+AGG | + | chr3.4:50872243-50872262 | None:intergenic | 40.0% |
| !! | AAGCTTGGTTGTTGACTTGT+TGG | - | chr3.4:50873668-50873687 | MS.gene73127:intron | 40.0% |
| !! | AGCTTGGTTGTTGACTTGTT+GGG | - | chr3.4:50873669-50873688 | MS.gene73127:intron | 40.0% |
| !! | CCATCTAATGGACTAAAGCT+TGG | - | chr3.4:50873653-50873672 | MS.gene73127:intron | 40.0% |
| !! | CTAAAGTGTCGGTGTTACAT+GGG | + | chr3.4:50873712-50873731 | None:intergenic | 40.0% |
| !! | TAAAGTGTCGGTGTTACATG+GGG | + | chr3.4:50873711-50873730 | None:intergenic | 40.0% |
| !! | TCTAAAGTGTCGGTGTTACA+TGG | + | chr3.4:50873713-50873732 | None:intergenic | 40.0% |
| !! | TGACTTGTTGGGTAGAAACA+GGG | - | chr3.4:50873680-50873699 | MS.gene73127:CDS | 40.0% |
| !! | TTGACTTGTTGGGTAGAAAC+AGG | - | chr3.4:50873679-50873698 | MS.gene73127:CDS | 40.0% |
| !!! | TTCGTGTGGTTTTGTATGTG+GGG | - | chr3.4:50873825-50873844 | MS.gene73127:intron | 40.0% |
| AAACAGGGATGCATAGGTAC+GGG | + | chr3.4:50874589-50874608 | None:intergenic | 45.0% | |
| AACTATGCTACCATGTGGCT+AGG | + | chr3.4:50875122-50875141 | None:intergenic | 45.0% | |
| ACTATGCTACCATGTGGCTA+GGG | + | chr3.4:50875121-50875140 | None:intergenic | 45.0% | |
| ACTTCTTTACCCTAGCCACA+TGG | - | chr3.4:50875109-50875128 | MS.gene73127:intron | 45.0% | |
| CAACTTTACCAGTTGCGTCA+AGG | - | chr3.4:50872927-50872946 | MS.gene73127:intron | 45.0% | |
| CAATGTGCACGCACCAAAAA+TGG | + | chr3.4:50872831-50872850 | None:intergenic | 45.0% | |
| CACTCATGGAACTGCAATTG+TGG | + | chr3.4:50873124-50873143 | None:intergenic | 45.0% | |
| CATGCTAAATGCAAGGGTTG+TGG | - | chr3.4:50875184-50875203 | MS.gene73127:intron | 45.0% | |
| CATGTGTATCGGACACTATG+AGG | + | chr3.4:50872958-50872977 | None:intergenic | 45.0% | |
| CGCTGGAAGAACAGAAAAAG+GGG | - | chr3.4:50874038-50874057 | MS.gene73127:intron | 45.0% | |
| CTCGTTTACTTCTTCGTCGT+TGG | - | chr3.4:50872334-50872353 | MS.gene73127:intron | 45.0% | |
| GAAACAGGGATGCATAGGTA+CGG | + | chr3.4:50874590-50874609 | None:intergenic | 45.0% | |
| GACTACCTAGTTGACAACTC+TGG | + | chr3.4:50875491-50875510 | None:intergenic | 45.0% | |
| GCACATATGCTCCTTGGATT+AGG | - | chr3.4:50872706-50872725 | MS.gene73127:intron | 45.0% | |
| GCCATGAATTTCACTCGCAA+TGG | + | chr3.4:50874400-50874419 | None:intergenic | 45.0% | |
| GCGCTGGAAGAACAGAAAAA+GGG | - | chr3.4:50874037-50874056 | MS.gene73127:intron | 45.0% | |
| GCGTAACACACCAAATGAGA+TGG | + | chr3.4:50873952-50873971 | None:intergenic | 45.0% | |
| GCTGGAAGAACAGAAAAAGG+GGG | - | chr3.4:50874039-50874058 | MS.gene73127:intron | 45.0% | |
| GGGATGTATAGGTATGGGTA+CGG | + | chr3.4:50874721-50874740 | None:intergenic | 45.0% | |
| GTGGAAACTATGCTACCATG+TGG | + | chr3.4:50875127-50875146 | None:intergenic | 45.0% | |
| TAACGAAACTTCCTTCTGGG+TGG | + | chr3.4:50872405-50872424 | None:intergenic | 45.0% | |
| TATAGGTATGGGTACGGTAC+CGG | + | chr3.4:50874715-50874734 | None:intergenic | 45.0% | |
| TATGTGGGGTGGATCAGTTA+AGG | - | chr3.4:50873839-50873858 | MS.gene73127:intron | 45.0% | |
| TGCGCTGGAAGAACAGAAAA+AGG | - | chr3.4:50874036-50874055 | MS.gene73127:intron | 45.0% | |
| TGTGTATCGGACACTATGAG+GGG | + | chr3.4:50872956-50872975 | None:intergenic | 45.0% | |
| TTGTCTGTCTAGCTGTCACT+TGG | + | chr3.4:50874108-50874127 | None:intergenic | 45.0% | |
| ! | GGAGTTCTTTTCACAACTCC+AGG | + | chr3.4:50873881-50873900 | None:intergenic | 45.0% |
| !! | ATATATAATGATATATTATT+TGG | - | chr3.4:50874444-50874463 | MS.gene73127:intron | 5.0% |
| !! | TATATAATGATATATTATTT+GGG | - | chr3.4:50874445-50874464 | MS.gene73127:intron | 5.0% |
| ACATGGACACCCCTAATCCA+AGG | + | chr3.4:50872720-50872739 | None:intergenic | 50.0% | |
| ACTTCTTCGTCGTTGGACTC+CGG | - | chr3.4:50872341-50872360 | MS.gene73127:intron | 50.0% | |
| AGAACAGAAAAAGGGGGCTG+TGG | - | chr3.4:50874045-50874064 | MS.gene73127:intron | 50.0% | |
| ATAGGTATGGGTACGGTACC+GGG | + | chr3.4:50874714-50874733 | None:intergenic | 50.0% | |
| CACAAGTACCATACGCGTAC+CGG | + | chr3.4:50874354-50874373 | None:intergenic | 50.0% | |
| CAGCGCAGCAATCTGTATCA+TGG | + | chr3.4:50874023-50874042 | None:intergenic | 50.0% | |
| CATGATACAGATTGCTGCGC+TGG | - | chr3.4:50874021-50874040 | MS.gene73127:intron | 50.0% | |
| CCTGTAATACGTGACACGAC+AGG | + | chr3.4:50875577-50875596 | None:intergenic | 50.0% | |
| CCTGTCGTGTCACGTATTAC+AGG | - | chr3.4:50875574-50875593 | MS.gene73127:CDS | 50.0% | |
| CGTGTCACGTATTACAGGAG+CGG | - | chr3.4:50875579-50875598 | MS.gene73127:CDS | 50.0% | |
| CTAAAGCTTCCGCATACGCA+GGG | - | chr3.4:50872789-50872808 | MS.gene73127:intron | 50.0% | |
| GAAAAAGGGGGCTGTGGAAA+AGG | - | chr3.4:50874051-50874070 | MS.gene73127:intron | 50.0% | |
| GGGTAACCCAACCCATCTAA+TGG | - | chr3.4:50873641-50873660 | MS.gene73127:intron | 50.0% | |
| GTACATATCCGGTACGCGTA+TGG | - | chr3.4:50874343-50874362 | MS.gene73127:intron | 50.0% | |
| GTGCACGCACCAAAAATGGT+GGG | + | chr3.4:50872827-50872846 | None:intergenic | 50.0% | |
| TGAAGCAATACACGGACACC+AGG | + | chr3.4:50873022-50873041 | None:intergenic | 50.0% | |
| TGTGCACGCACCAAAAATGG+TGG | + | chr3.4:50872828-50872847 | None:intergenic | 50.0% | |
| TTACAGAGCAGACAGCGTGT+TGG | - | chr3.4:50875617-50875636 | MS.gene73127:CDS | 50.0% | |
| ! | ACAGTGGGTTCTACGAGGTT+GGG | - | chr3.4:50872174-50872193 | MS.gene73127:CDS | 50.0% |
| ! | CAAGAGGGTTGGGGTTGATT+TGG | - | chr3.4:50872618-50872637 | MS.gene73127:intron | 50.0% |
| ! | GAGAAGGCTCCCACCATTTT+TGG | - | chr3.4:50872815-50872834 | MS.gene73127:intron | 50.0% |
| !! | GGAAGAGCATCTTCACGCTA+CGG | - | chr3.4:50872195-50872214 | MS.gene73127:CDS | 50.0% |
| !!! | GTGTGGTTTTGTATGTGGGG+TGG | - | chr3.4:50873828-50873847 | MS.gene73127:intron | 50.0% |
| ACAGGACCATTGAACACCGC+AGG | + | chr3.4:50872225-50872244 | None:intergenic | 55.0% | |
| AGGGATGCATAGGTACGGGT+AGG | + | chr3.4:50874585-50874604 | None:intergenic | 55.0% | |
| AGGGGTAACCTTGACGCAAC+TGG | + | chr3.4:50872938-50872957 | None:intergenic | 55.0% | |
| ATCGCTTACGAGATGCGCTG+CGG | + | chr3.4:50875653-50875672 | None:intergenic | 55.0% | |
| CAAACTGATAGCCAGGCCAG+AGG | + | chr3.4:50875006-50875025 | None:intergenic | 55.0% | |
| CATAGGTACGGGTAGGGTAC+CGG | + | chr3.4:50874578-50874597 | None:intergenic | 55.0% | |
| CGGTACGCGTATGGTACTTG+TGG | - | chr3.4:50874352-50874371 | MS.gene73127:intron | 55.0% | |
| CTTCCTTCTGGGTGGCTCAT+CGG | + | chr3.4:50872397-50872416 | None:intergenic | 55.0% | |
| CTTCTCGAACCCTGCGTATG+CGG | + | chr3.4:50872801-50872820 | None:intergenic | 55.0% | |
| GCTAAAGCTTCCGCATACGC+AGG | - | chr3.4:50872788-50872807 | MS.gene73127:intron | 55.0% | |
| GGGATGCATAGGTACGGGTA+GGG | + | chr3.4:50874584-50874603 | None:intergenic | 55.0% | |
| TTTCCGATGAGCCACCCAGA+AGG | - | chr3.4:50872391-50872410 | MS.gene73127:intron | 55.0% | |
| TTTCTGTGTTGCCAGGCCTC+TGG | - | chr3.4:50874987-50875006 | MS.gene73127:intron | 55.0% | |
| ! | ATAGGTACGGGTAGGGTACC+GGG | + | chr3.4:50874577-50874596 | None:intergenic | 55.0% |
| ! | ATGCGGAAGCTTTAGCGCAC+CGG | + | chr3.4:50872784-50872803 | None:intergenic | 55.0% |
| ! | GACAGTGGGTTCTACGAGGT+TGG | - | chr3.4:50872173-50872192 | MS.gene73127:CDS | 55.0% |
| ! | TGGAGACAGTGGGTTCTACG+AGG | - | chr3.4:50872169-50872188 | MS.gene73127:CDS | 55.0% |
| CGCATACGCAGGGTTCGAGA+AGG | - | chr3.4:50872799-50872818 | MS.gene73127:intron | 60.0% | |
| CGGCAATGCAGAGCGGCTAT+TGG | - | chr3.4:50875537-50875556 | MS.gene73127:CDS | 60.0% | |
| GGGAAATAGTGCCGCGATCG+CGG | - | chr3.4:50875517-50875536 | MS.gene73127:CDS | 60.0% | |
| GGTGCACCTGCGGTGTTCAA+TGG | - | chr3.4:50872216-50872235 | MS.gene73127:CDS | 60.0% | |
| TGACACGACAGGTCCCACAG+TGG | + | chr3.4:50875566-50875585 | None:intergenic | 60.0% | |
| TTCACGCTACGGTGCACCTG+CGG | - | chr3.4:50872206-50872225 | MS.gene73127:CDS | 60.0% | |
| ! | CGGCTATTGGCTGCCACTGT+GGG | - | chr3.4:50875550-50875569 | MS.gene73127:CDS | 60.0% |
| ! | TGCGGAAGCTTTAGCGCACC+GGG | + | chr3.4:50872783-50872802 | None:intergenic | 60.0% |
| GCGATCGCGGCAATGCAGAG+CGG | - | chr3.4:50875530-50875549 | MS.gene73127:CDS | 65.0% | |
| GCTCTGCATTGCCGCGATCG+CGG | + | chr3.4:50875531-50875550 | None:intergenic | 65.0% | |
| GCTTACGAGATGCGCTGCGG+CGG | + | chr3.4:50875650-50875669 | None:intergenic | 65.0% | |
| TGATAGCCAGGCCAGAGGCC+TGG | + | chr3.4:50875001-50875020 | None:intergenic | 65.0% | |
| ! | GCGGCTATTGGCTGCCACTG+TGG | - | chr3.4:50875549-50875568 | MS.gene73127:CDS | 65.0% |
| GTGTTGCCAGGCCTCTGGCC+TGG | - | chr3.4:50874992-50875011 | MS.gene73127:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 50872168 | 50875690 | 50872168 | ID=MS.gene73127 |
| chr3.4 | mRNA | 50872168 | 50875690 | 50872168 | ID=MS.gene73127.t1;Parent=MS.gene73127 |
| chr3.4 | exon | 50875427 | 50875690 | 50875427 | ID=MS.gene73127.t1.exon1;Parent=MS.gene73127.t1 |
| chr3.4 | CDS | 50875427 | 50875690 | 50875427 | ID=cds.MS.gene73127.t1;Parent=MS.gene73127.t1 |
| chr3.4 | exon | 50873672 | 50873827 | 50873672 | ID=MS.gene73127.t1.exon2;Parent=MS.gene73127.t1 |
| chr3.4 | CDS | 50873672 | 50873827 | 50873672 | ID=cds.MS.gene73127.t1;Parent=MS.gene73127.t1 |
| chr3.4 | exon | 50872168 | 50872332 | 50872168 | ID=MS.gene73127.t1.exon3;Parent=MS.gene73127.t1 |
| chr3.4 | CDS | 50872168 | 50872332 | 50872168 | ID=cds.MS.gene73127.t1;Parent=MS.gene73127.t1 |
| Gene Sequence |
| Protein sequence |
