Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73342.t1 | XP_003594974.2 | 99.2 | 962 | 8 | 0 | 1 | 962 | 1 | 962 | 0.00E+00 | 1861.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73342.t1 | O65570 | 72.2 | 977 | 254 | 7 | 1 | 962 | 1 | 974 | 0.0e+00 | 1410.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73342.t1 | G7IN22 | 99.2 | 962 | 8 | 0 | 1 | 962 | 1 | 962 | 0.0e+00 | 1861.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050894 | MS.gene73342 | 0.808624 | 2.83E-50 | -1.69E-46 |
| MS.gene060398 | MS.gene73342 | 0.897224 | 1.73E-76 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73342.t1 | MTR_2g036860 | 99.376 | 962 | 6 | 0 | 1 | 962 | 1 | 962 | 0.0 | 1982 |
| MS.gene73342.t1 | MTR_4g127660 | 78.571 | 966 | 197 | 6 | 1 | 962 | 1 | 960 | 0.0 | 1558 |
| MS.gene73342.t1 | MTR_7g091460 | 46.100 | 1000 | 484 | 13 | 1 | 962 | 1 | 983 | 0.0 | 887 |
| MS.gene73342.t1 | MTR_3g463530 | 45.794 | 963 | 442 | 11 | 1 | 962 | 1 | 884 | 0.0 | 846 |
| MS.gene73342.t1 | MTR_3g463530 | 47.094 | 826 | 407 | 8 | 1 | 825 | 1 | 797 | 0.0 | 773 |
| MS.gene73342.t1 | MTR_3g463530 | 49.724 | 724 | 357 | 5 | 1 | 723 | 1 | 718 | 0.0 | 739 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73342.t1 | AT4G30160 | 74.438 | 978 | 230 | 9 | 1 | 962 | 1 | 974 | 0.0 | 1473 |
| MS.gene73342.t1 | AT4G30160 | 74.438 | 978 | 230 | 9 | 1 | 962 | 1 | 974 | 0.0 | 1473 |
| MS.gene73342.t1 | AT4G30160 | 74.438 | 978 | 230 | 9 | 1 | 962 | 1 | 974 | 0.0 | 1473 |
| MS.gene73342.t1 | AT4G30160 | 73.759 | 987 | 230 | 10 | 1 | 962 | 1 | 983 | 0.0 | 1464 |
| MS.gene73342.t1 | AT5G57320 | 66.530 | 974 | 302 | 9 | 1 | 962 | 1 | 962 | 0.0 | 1338 |
| MS.gene73342.t1 | AT5G57320 | 66.530 | 974 | 302 | 9 | 1 | 962 | 1 | 962 | 0.0 | 1338 |
| MS.gene73342.t1 | AT2G41740 | 46.138 | 984 | 498 | 7 | 3 | 962 | 1 | 976 | 0.0 | 874 |
| MS.gene73342.t1 | AT2G41740 | 46.138 | 984 | 498 | 7 | 3 | 962 | 1 | 976 | 0.0 | 874 |
| MS.gene73342.t1 | AT2G29890 | 45.041 | 968 | 491 | 12 | 1 | 962 | 1 | 933 | 0.0 | 829 |
| MS.gene73342.t1 | AT2G29890 | 45.041 | 968 | 469 | 13 | 1 | 962 | 1 | 911 | 0.0 | 823 |
| MS.gene73342.t1 | AT3G57410 | 52.909 | 739 | 345 | 3 | 1 | 737 | 1 | 738 | 0.0 | 822 |
| MS.gene73342.t1 | AT3G57410 | 52.909 | 739 | 345 | 3 | 1 | 737 | 1 | 738 | 0.0 | 822 |
| MS.gene73342.t1 | AT3G57410 | 52.909 | 739 | 345 | 3 | 1 | 737 | 1 | 738 | 0.0 | 822 |
| MS.gene73342.t1 | AT3G57410 | 52.909 | 739 | 345 | 3 | 1 | 737 | 1 | 738 | 0.0 | 822 |
| MS.gene73342.t1 | AT3G57410 | 52.909 | 739 | 345 | 3 | 1 | 737 | 1 | 738 | 0.0 | 822 |
| MS.gene73342.t1 | AT3G57410 | 52.909 | 739 | 345 | 3 | 1 | 737 | 1 | 738 | 0.0 | 822 |
| MS.gene73342.t1 | AT3G57410 | 52.909 | 739 | 345 | 3 | 1 | 737 | 1 | 738 | 0.0 | 822 |
| MS.gene73342.t1 | AT3G57410 | 52.909 | 739 | 345 | 3 | 1 | 737 | 1 | 738 | 0.0 | 822 |
| MS.gene73342.t1 | AT2G29890 | 44.928 | 966 | 471 | 12 | 1 | 962 | 1 | 909 | 0.0 | 822 |
| MS.gene73342.t1 | AT2G29890 | 44.928 | 966 | 471 | 12 | 1 | 962 | 1 | 909 | 0.0 | 822 |
| MS.gene73342.t1 | AT3G57410 | 52.909 | 739 | 345 | 3 | 1 | 737 | 1 | 738 | 0.0 | 820 |
| MS.gene73342.t1 | AT3G57410 | 53.022 | 728 | 339 | 3 | 1 | 726 | 1 | 727 | 0.0 | 806 |
| MS.gene73342.t1 | AT2G29890 | 43.996 | 966 | 463 | 13 | 1 | 962 | 1 | 892 | 0.0 | 794 |
Find 213 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCTGAAACTGGGGAATTC+TGG | 0.163784 | 2.4:+52656435 | MS.gene73342:CDS |
| CATTTACTCCTTGACGTTTC+AGG | 0.184455 | 2.4:-52658087 | None:intergenic |
| GCGGAGTTCAAAGAGAAATT+TGG | 0.195231 | 2.4:+52663954 | MS.gene73342:CDS |
| CTTCAATTACTCGAATTATC+TGG | 0.197582 | 2.4:-52657843 | None:intergenic |
| CCCCAGAATTCCCCAGTTTC+AGG | 0.225810 | 2.4:-52656437 | None:intergenic |
| AATTTGCCATAGGAGGATTT+TGG | 0.234228 | 2.4:-52654766 | None:intergenic |
| CAAGAAGGTGGAGTTGCTTC+TGG | 0.234547 | 2.4:+52655920 | MS.gene73342:CDS |
| ATGAATTGGAACCATTAAAT+TGG | 0.242292 | 2.4:-52656223 | None:intergenic |
| TTAAGTCCAAGTTTGATTCT+TGG | 0.254888 | 2.4:+52657884 | MS.gene73342:CDS |
| GGAGGTTGTACAGTATATTA+AGG | 0.263257 | 2.4:+52656271 | MS.gene73342:CDS |
| TGATTGCACTGGACATTTAC+AGG | 0.271012 | 2.4:+52658162 | MS.gene73342:CDS |
| TTCTTTCACATCTTCTTCTA+TGG | 0.276973 | 2.4:-52663668 | None:intergenic |
| AGTAGCAGCTAGTGCATTAA+AGG | 0.277906 | 2.4:-52663252 | None:intergenic |
| GTACAGAATCTGAACAGTTT+TGG | 0.287363 | 2.4:+52660296 | MS.gene73342:CDS |
| ATGATACCTCGGTCAGTTAA+AGG | 0.289692 | 2.4:+52663437 | MS.gene73342:CDS |
| CACAAATAAATGTTATATTC+TGG | 0.303505 | 2.4:+52657607 | MS.gene73342:CDS |
| GTTACTCAGATATCTTTGTC+TGG | 0.304298 | 2.4:+52661965 | MS.gene73342:CDS |
| GGATTCCTACGTGATCTTAA+AGG | 0.306222 | 2.4:+52654798 | MS.gene73342:CDS |
| GGGGAATTCTGGGGTTTCTT+TGG | 0.312705 | 2.4:+52656446 | MS.gene73342:CDS |
| GGCAGTTTCTATGAGAGATT+TGG | 0.315841 | 2.4:+52654507 | MS.gene73342:CDS |
| TTGAGAAACTGCAACAAAAT+AGG | 0.317332 | 2.4:-52660387 | None:intergenic |
| AATGAAGTTTCTTGCTTCTC+AGG | 0.318363 | 2.4:+52659179 | MS.gene73342:CDS |
| GATTCTGTACCTTCCCTTTG+TGG | 0.322489 | 2.4:-52660283 | None:intergenic |
| TAAATAGTGGACTTGAAATA+TGG | 0.322692 | 2.4:+52654713 | MS.gene73342:intron |
| TTAATGGCTGATCCTGAAAC+TGG | 0.338286 | 2.4:+52656425 | MS.gene73342:CDS |
| AGCAGAGGATGGAAAGTTAA+TGG | 0.344061 | 2.4:+52656409 | MS.gene73342:intron |
| CCTGCTATCTTTACTTGGTC+TGG | 0.345682 | 2.4:+52659769 | MS.gene73342:CDS |
| ATCCAGCTCAACTGTCTTGA+TGG | 0.346350 | 2.4:-52655804 | None:intergenic |
| CCTTCCATGACAACATATAT+TGG | 0.352063 | 2.4:-52662320 | None:intergenic |
| GAATCTGGTGTCGTAGATTT+CGG | 0.352645 | 2.4:-52663335 | None:intergenic |
| TAATTCACTGGCTAGCAAAA+TGG | 0.355291 | 2.4:+52659149 | MS.gene73342:CDS |
| GAACGTTGCTGGGATTTATC+AGG | 0.361538 | 2.4:-52663173 | None:intergenic |
| TGCGTCATGACATCCATTAC+TGG | 0.367590 | 2.4:+52655637 | MS.gene73342:CDS |
| TGTATAGCTTGCATATTATC+AGG | 0.369589 | 2.4:-52659561 | None:intergenic |
| ATGGTAACTTTGCAGATGTT+GGG | 0.369954 | 2.4:+52662461 | MS.gene73342:intron |
| TCCTGAAACTGGGGAATTCT+GGG | 0.370505 | 2.4:+52656436 | MS.gene73342:CDS |
| TGTCCAGCTCCTTGGAAAGC+TGG | 0.374668 | 2.4:-52654532 | None:intergenic |
| AGGATAGAATGGAATTGAAT+TGG | 0.375728 | 2.4:-52659326 | None:intergenic |
| TATTGCTATATACTTCATAA+TGG | 0.378420 | 2.4:+52659745 | MS.gene73342:CDS |
| CGGAGTTCAAAGAGAAATTT+GGG | 0.379388 | 2.4:+52663955 | MS.gene73342:CDS |
| ATCTTTCAATATTCGTATCC+TGG | 0.380002 | 2.4:+52658457 | MS.gene73342:CDS |
| AAATGTTATATTCTGGATTG+TGG | 0.385301 | 2.4:+52657614 | MS.gene73342:CDS |
| GCATCCTCTCTATAAGTTCC+TGG | 0.388234 | 2.4:-52659813 | None:intergenic |
| TCACCGAGCAGGAAACTTAA+AGG | 0.389184 | 2.4:+52660519 | MS.gene73342:intron |
| ACTAGAAGTAAGTGCAGATA+TGG | 0.389659 | 2.4:-52663384 | None:intergenic |
| ATCGTGTTCGTGTGCGGGGA+AGG | 0.389967 | 2.4:+52663222 | MS.gene73342:CDS |
| TTCAATTACTCGAATTATCT+GGG | 0.390638 | 2.4:-52657842 | None:intergenic |
| TCTTTCTTGAATAGATGAAT+TGG | 0.394590 | 2.4:-52656237 | None:intergenic |
| ATACGTGGGTGTTCGCCGTT+TGG | 0.395609 | 2.4:-52663129 | None:intergenic |
| GGCGTTCATATGGGTAAATC+AGG | 0.400211 | 2.4:-52663717 | None:intergenic |
| CAAGACTTACATTGCGGAAA+AGG | 0.402344 | 2.4:+52659476 | MS.gene73342:CDS |
| TTCAAAGAATCGGCCTCAAC+GGG | 0.407392 | 2.4:-52657569 | None:intergenic |
| TCCTGATCGTGTTCGTGTGC+GGG | 0.410934 | 2.4:+52663217 | MS.gene73342:CDS |
| GGGTTTGATTTAGGGGTGAC+TGG | 0.413508 | 2.4:-52663595 | None:intergenic |
| TACGTGGGTGTTCGCCGTTT+GGG | 0.414296 | 2.4:-52663128 | None:intergenic |
| CGTTGCATTATTCCGCATCC+AGG | 0.416492 | 2.4:+52659530 | MS.gene73342:CDS |
| GATGCTAGTATTGCAGAATC+TGG | 0.417284 | 2.4:-52663350 | None:intergenic |
| TCAGATATCTTTGTCTGGGT+TGG | 0.423965 | 2.4:+52661970 | MS.gene73342:CDS |
| TCCTCATTGTATGTCTCATC+AGG | 0.426503 | 2.4:-52659504 | None:intergenic |
| TATCTTTGTCTGGGTTGGCC+AGG | 0.426942 | 2.4:+52661975 | MS.gene73342:CDS |
| GAATTCTGGGGTTTCTTTGG+CGG | 0.427483 | 2.4:+52656449 | MS.gene73342:CDS |
| ATCCCAGTCAAAAGATTAGT+AGG | 0.428935 | 2.4:+52660344 | MS.gene73342:CDS |
| GAGTGCCTGCATTCTACTCT+TGG | 0.430508 | 2.4:-52662007 | None:intergenic |
| CTTCTGTCATTAAATCATCC+TGG | 0.440191 | 2.4:-52661924 | None:intergenic |
| AGAAAGAGCTAAAGCTTTGG+AGG | 0.440477 | 2.4:+52656253 | MS.gene73342:CDS |
| TCAAGAAAGAGCTAAAGCTT+TGG | 0.440709 | 2.4:+52656250 | MS.gene73342:CDS |
| TCTTCAGATACAGTTACATC+AGG | 0.444973 | 2.4:-52657916 | None:intergenic |
| TATTATCAGGTCCAGTGCCC+TGG | 0.445046 | 2.4:-52659548 | None:intergenic |
| CAGATAATTCGAGTAATTGA+AGG | 0.449123 | 2.4:+52657844 | MS.gene73342:CDS |
| GATCCAGCTTTCCAAGGAGC+TGG | 0.449721 | 2.4:+52654529 | MS.gene73342:CDS |
| TGTTCAGTATCGGGAAGTAC+AGG | 0.451092 | 2.4:+52655847 | MS.gene73342:CDS |
| TTGAGGCCGATTCTTTGAAA+AGG | 0.452089 | 2.4:+52657573 | MS.gene73342:CDS |
| TGAAGGTTTGTAGGATAGAA+TGG | 0.453160 | 2.4:-52659337 | None:intergenic |
| TTACTCAGATATCTTTGTCT+GGG | 0.454519 | 2.4:+52661966 | MS.gene73342:CDS |
| ATGAAGTATATAGCAATAAG+AGG | 0.456334 | 2.4:-52659740 | None:intergenic |
| CCTTCTTGAGGTATAATACA+AGG | 0.457365 | 2.4:-52655905 | None:intergenic |
| GATAAGGACGACTGTCTCAT+TGG | 0.462084 | 2.4:+52658484 | MS.gene73342:CDS |
| ATGGACCTGCTATCTTTACT+TGG | 0.463130 | 2.4:+52659764 | MS.gene73342:CDS |
| GTTGGAAATGTTCGTCTGGA+TGG | 0.465224 | 2.4:+52657637 | MS.gene73342:CDS |
| CTGAGGCCAAGAATCAAACT+TGG | 0.474669 | 2.4:-52657890 | None:intergenic |
| AGTTGAAAGGTTCCTACCGC+CGG | 0.478867 | 2.4:-52663285 | None:intergenic |
| GATGGACGTGGCAAGGTAGC+AGG | 0.479029 | 2.4:+52657937 | MS.gene73342:CDS |
| CCCCGCACACGAACACGATC+AGG | 0.479194 | 2.4:-52663218 | None:intergenic |
| CAACCTTACATTGATTGCAC+TGG | 0.482870 | 2.4:+52658151 | MS.gene73342:CDS |
| AGGACGTGCTGTTCAGTATC+GGG | 0.483979 | 2.4:+52655838 | MS.gene73342:CDS |
| GCAAGCTATACAAGTTGAAC+CGG | 0.486174 | 2.4:+52659572 | MS.gene73342:CDS |
| GAGGATGCTGGATATGATAA+AGG | 0.486562 | 2.4:+52659828 | MS.gene73342:CDS |
| TTTCTCAGGGTTTGATTTAG+GGG | 0.486825 | 2.4:-52663602 | None:intergenic |
| TGAGGCCGATTCTTTGAAAA+GGG | 0.489520 | 2.4:+52657574 | MS.gene73342:CDS |
| TTATTCCGCATCCAGGGCAC+TGG | 0.492358 | 2.4:+52659537 | MS.gene73342:CDS |
| TGATAATAACTTTACCTGAC+TGG | 0.493743 | 2.4:-52655673 | None:intergenic |
| TGCTACGGGAGGAACGTTGC+TGG | 0.494003 | 2.4:-52663184 | None:intergenic |
| GTTGAAAGGTTCCTACCGCC+GGG | 0.494138 | 2.4:-52663284 | None:intergenic |
| AGAATGCAGGCACTCACAAT+TGG | 0.495521 | 2.4:+52662015 | MS.gene73342:CDS |
| AATGTTATATTCTGGATTGT+GGG | 0.495607 | 2.4:+52657615 | MS.gene73342:CDS |
| ATAGCAATAAGAGGAATTCA+AGG | 0.497482 | 2.4:-52659731 | None:intergenic |
| GTTGAAAGCTGATGCAGTAA+AGG | 0.498606 | 2.4:+52658120 | MS.gene73342:CDS |
| CATGACATCCATTACTGGAT+TGG | 0.498777 | 2.4:+52655642 | MS.gene73342:CDS |
| TGTCCAGTGCAATCAATGTA+AGG | 0.499951 | 2.4:-52658154 | None:intergenic |
| CAGTCGTCCTTATCTTCTCC+AGG | 0.501958 | 2.4:-52658475 | None:intergenic |
| TTTACAATCAAAACCACAAA+GGG | 0.502772 | 2.4:+52660270 | MS.gene73342:CDS |
| CCAATATATGTTGTCATGGA+AGG | 0.508420 | 2.4:+52662320 | MS.gene73342:CDS |
| TTTCCAAGGAGCTGGACAAA+AGG | 0.508529 | 2.4:+52654537 | MS.gene73342:CDS |
| CTATCTCGCATTTCCCCTCA+TGG | 0.511015 | 2.4:-52656301 | None:intergenic |
| TTTAGTGAAGATCGAGCAAA+AGG | 0.511406 | 2.4:-52656158 | None:intergenic |
| AAATGCGAGATAGCTGCTAT+TGG | 0.513483 | 2.4:+52656311 | MS.gene73342:CDS |
| TGTCTCATTGGAACGTGGAT+AGG | 0.513559 | 2.4:+52658496 | MS.gene73342:CDS |
| GAGGACGTGCTGTTCAGTAT+CGG | 0.513997 | 2.4:+52655837 | MS.gene73342:CDS |
| GTGGGTTGGAAATGTTCGTC+TGG | 0.515021 | 2.4:+52657633 | MS.gene73342:CDS |
| CAGGTCCAGTGCCCTGGATG+CGG | 0.516873 | 2.4:-52659542 | None:intergenic |
| TACAAGGTTTGAAATAAGAA+AGG | 0.520144 | 2.4:-52655889 | None:intergenic |
| TTCGTATCCTGGAGAAGATA+AGG | 0.521373 | 2.4:+52658468 | MS.gene73342:CDS |
| TTCTGTCATTAAATCATCCT+GGG | 0.521470 | 2.4:-52661923 | None:intergenic |
| TTATATTCTGGATTGTGGGT+TGG | 0.521892 | 2.4:+52657619 | MS.gene73342:CDS |
| GCAGCTAGTGCATTAAAGGC+TGG | 0.528598 | 2.4:-52663248 | None:intergenic |
| AGCAGACTTATCATTATCAC+TGG | 0.530775 | 2.4:-52656498 | None:intergenic |
| CCTGTCCCAAAATCCTCCTA+TGG | 0.532614 | 2.4:+52654760 | MS.gene73342:CDS |
| GATGTAACTGTATCTGAAGA+TGG | 0.533885 | 2.4:+52657919 | MS.gene73342:CDS |
| GTTACATCAATGTCTGGCAC+AGG | 0.534839 | 2.4:-52663760 | None:intergenic |
| TTTCAAAGAATCGGCCTCAA+CGG | 0.535729 | 2.4:-52657570 | None:intergenic |
| CAGGACTAACAGACATGCTA+CGG | 0.539604 | 2.4:-52663199 | None:intergenic |
| GTCCTGATCGTGTTCGTGTG+CGG | 0.539842 | 2.4:+52663216 | MS.gene73342:CDS |
| CTTTGTCTGGGTTGGCCAGG+AGG | 0.540109 | 2.4:+52661978 | MS.gene73342:CDS |
| TTGGAAATGTTCGTCTGGAT+GGG | 0.540387 | 2.4:+52657638 | MS.gene73342:CDS |
| CAATACAACTGCAGAAGACC+AGG | 0.543128 | 2.4:+52659795 | MS.gene73342:CDS |
| ATAGAAGAAGATGTGAAAGA+AGG | 0.544384 | 2.4:+52663670 | MS.gene73342:CDS |
| TATCAGGGAGGGCTTAGTGA+TGG | 0.545709 | 2.4:+52659450 | MS.gene73342:intron |
| TACTCTTGGAATCAACCTCC+TGG | 0.547696 | 2.4:-52661993 | None:intergenic |
| AAACGGCGAACACCCACGTA+TGG | 0.547897 | 2.4:+52663131 | MS.gene73342:CDS |
| GGTTTGGCGCGTGAACGGTC+AGG | 0.549073 | 2.4:+52658378 | MS.gene73342:intron |
| TGTTGGGGAACTCATTTCAA+AGG | 0.549818 | 2.4:+52662477 | MS.gene73342:CDS |
| GCTACGGGAGGAACGTTGCT+GGG | 0.550775 | 2.4:-52663183 | None:intergenic |
| GATTTGGATCCAGCTTTCCA+AGG | 0.552924 | 2.4:+52654523 | MS.gene73342:CDS |
| TACATTATCAGAAACCCAAA+CGG | 0.553312 | 2.4:+52663114 | MS.gene73342:intron |
| CTGTAGGCTCGAATATATGA+AGG | 0.554261 | 2.4:+52659296 | MS.gene73342:intron |
| CACGGTTGTTTGTATGCAGA+GGG | 0.554681 | 2.4:+52655975 | MS.gene73342:CDS |
| AAGAGCTTCAGCTAATTCAC+TGG | 0.554814 | 2.4:+52659137 | MS.gene73342:CDS |
| GTTGAGCTGGATGCAGCTCT+CGG | 0.559008 | 2.4:+52655815 | MS.gene73342:CDS |
| TTACAGTGTTGAAAAGGGAC+TGG | 0.560938 | 2.4:+52657541 | MS.gene73342:intron |
| ATCATAGTTTCTCGTGCAGA+AGG | 0.563119 | 2.4:-52663419 | None:intergenic |
| CTCACTCTACAAAACTGCTT+AGG | 0.564026 | 2.4:+52656525 | MS.gene73342:CDS |
| ATCTGAAGATGGACGTGGCA+AGG | 0.564373 | 2.4:+52657930 | MS.gene73342:CDS |
| CCAGACCAAGTAAAGATAGC+AGG | 0.568264 | 2.4:-52659769 | None:intergenic |
| CTTCAGATACAGTTACATCA+GGG | 0.572311 | 2.4:-52657915 | None:intergenic |
| AGCCATCAAGACAGTTGAGC+TGG | 0.572361 | 2.4:+52655802 | MS.gene73342:CDS |
| GGAACTTATAGAGAGGATGC+TGG | 0.572818 | 2.4:+52659816 | MS.gene73342:CDS |
| GATTGGTAAAGACACCAGTC+AGG | 0.573421 | 2.4:+52655659 | MS.gene73342:CDS |
| GTGCAATCAATGTAAGGTTG+AGG | 0.575078 | 2.4:-52658148 | None:intergenic |
| TGGTAACTTTGCAGATGTTG+GGG | 0.577791 | 2.4:+52662462 | MS.gene73342:intron |
| TAATGGCTGATCCTGAAACT+GGG | 0.580468 | 2.4:+52656426 | MS.gene73342:CDS |
| CTTTCGAGAGCCCCGGCGGT+AGG | 0.580721 | 2.4:+52663273 | MS.gene73342:CDS |
| TGATTCCAAGAGTAGAATGC+AGG | 0.583411 | 2.4:+52662002 | MS.gene73342:CDS |
| TGTCTTTACCAATCCAGTAA+TGG | 0.589112 | 2.4:-52655650 | None:intergenic |
| TCCCAGTCAAAAGATTAGTA+GGG | 0.590135 | 2.4:+52660345 | MS.gene73342:CDS |
| GGCTCCAATATATGTTGTCA+TGG | 0.590221 | 2.4:+52662316 | MS.gene73342:CDS |
| CCTGATCGTGTTCGTGTGCG+GGG | 0.591569 | 2.4:+52663218 | MS.gene73342:CDS |
| ACAGTTACATCAGGGGTCTG+AGG | 0.591805 | 2.4:-52657907 | None:intergenic |
| CGGCGAACACCCACGTATGG+AGG | 0.593381 | 2.4:+52663134 | MS.gene73342:CDS |
| TTACTGGAGGTGGAGTTGAA+AGG | 0.597606 | 2.4:-52663298 | None:intergenic |
| AGAGAAATTTGGGATGTCCA+AGG | 0.597849 | 2.4:+52663965 | MS.gene73342:CDS |
| AGAAGGCGAAGCTGAAGATG+AGG | 0.600007 | 2.4:+52663687 | MS.gene73342:CDS |
| GAAGCAACTCCACCTTCTTG+AGG | 0.601221 | 2.4:-52655917 | None:intergenic |
| CACGAGAAACTATGATACCT+CGG | 0.603581 | 2.4:+52663426 | MS.gene73342:CDS |
| CAATATATGTTGTCATGGAA+GGG | 0.604158 | 2.4:+52662321 | MS.gene73342:CDS |
| GTACAGGTTTGGCGCGTGAA+CGG | 0.605475 | 2.4:+52658373 | MS.gene73342:intron |
| CCTTGTATTATACCTCAAGA+AGG | 0.606272 | 2.4:+52655905 | MS.gene73342:CDS |
| CCTGAAACTGGGGAATTCTG+GGG | 0.606517 | 2.4:+52656437 | MS.gene73342:CDS |
| ACACGGTTGTTTGTATGCAG+AGG | 0.610026 | 2.4:+52655974 | MS.gene73342:CDS |
| GTTGCATTATTCCGCATCCA+GGG | 0.613586 | 2.4:+52659531 | MS.gene73342:CDS |
| ACTAGACCTTCCTCCATACG+TGG | 0.613657 | 2.4:-52663144 | None:intergenic |
| TCAATTACTCGAATTATCTG+GGG | 0.614977 | 2.4:-52657841 | None:intergenic |
| TGTTTACCTTTAACTGACCG+AGG | 0.615991 | 2.4:-52663443 | None:intergenic |
| GACAAGGAGAATTCGGTGAG+CGG | 0.616082 | 2.4:+52663628 | MS.gene73342:CDS |
| ATAGTTTCTCGTGCAGAAGG+TGG | 0.618217 | 2.4:-52663416 | None:intergenic |
| AGGACTAACAGACATGCTAC+GGG | 0.618333 | 2.4:-52663198 | None:intergenic |
| ATTAAGGATACCTACCATGA+GGG | 0.621121 | 2.4:+52656287 | MS.gene73342:CDS |
| GTTCAGTATCGGGAAGTACA+GGG | 0.622918 | 2.4:+52655848 | MS.gene73342:CDS |
| AATGGCTGATCCTGAAACTG+GGG | 0.624892 | 2.4:+52656427 | MS.gene73342:CDS |
| ACGTCAAGGAGTAAATGTCA+AGG | 0.628911 | 2.4:+52658093 | MS.gene73342:CDS |
| CTCGCATTTCCCCTCATGGT+AGG | 0.630514 | 2.4:-52656297 | None:intergenic |
| ATTTACAATCAAAACCACAA+AGG | 0.632843 | 2.4:+52660269 | MS.gene73342:CDS |
| GGCGAAGCTGAAGATGAGGA+AGG | 0.634058 | 2.4:+52663691 | MS.gene73342:CDS |
| GAACACCCACGTATGGAGGA+AGG | 0.634412 | 2.4:+52663138 | MS.gene73342:CDS |
| CATTGATGTAACTAAAAGAG+AGG | 0.637052 | 2.4:+52663771 | MS.gene73342:CDS |
| CAATCAAAACCACAAAGGGA+AGG | 0.637162 | 2.4:+52660274 | MS.gene73342:CDS |
| CGTCAAGGAGTAAATGTCAA+GGG | 0.639535 | 2.4:+52658094 | MS.gene73342:CDS |
| GCTGCTACTTTCGAGAGCCC+CGG | 0.641229 | 2.4:+52663266 | MS.gene73342:CDS |
| TGTATTATACCTCAAGAAGG+TGG | 0.646499 | 2.4:+52655908 | MS.gene73342:CDS |
| GTAGCACTCCTGAAACGTCA+AGG | 0.647028 | 2.4:+52658079 | MS.gene73342:intron |
| GCATGTTGTACATGTCAAAG+AGG | 0.649688 | 2.4:+52656000 | MS.gene73342:CDS |
| CAGTCAAAAGATTAGTAGGG+AGG | 0.650775 | 2.4:+52660348 | MS.gene73342:CDS |
| GAAATGTGCCTTACATCCAA+TGG | 0.653886 | 2.4:-52662533 | None:intergenic |
| GGGACTGGCAGAACCCGTTG+AGG | 0.658697 | 2.4:+52657556 | MS.gene73342:CDS |
| AAGACCAGGAACTTATAGAG+AGG | 0.660282 | 2.4:+52659809 | MS.gene73342:CDS |
| GAGCTGGATGCAGCTCTCGG+AGG | 0.665227 | 2.4:+52655818 | MS.gene73342:CDS |
| AAACTGCAACAAAATAGGTG+AGG | 0.665492 | 2.4:-52660382 | None:intergenic |
| GATAGGAAAGAACAGTGTTG+AGG | 0.666799 | 2.4:+52658513 | MS.gene73342:CDS |
| GGAGATATACAACTTCTCCC+AGG | 0.669877 | 2.4:+52661906 | MS.gene73342:CDS |
| TTCAGATACAGTTACATCAG+GGG | 0.671783 | 2.4:-52657914 | None:intergenic |
| GCAGGCACTCACAATTGGCG+AGG | 0.675142 | 2.4:+52662020 | MS.gene73342:CDS |
| TTAAGGATACCTACCATGAG+GGG | 0.677686 | 2.4:+52656288 | MS.gene73342:CDS |
| AAATAACAGGAGTTAGTCAG+TGG | 0.680430 | 2.4:+52657802 | MS.gene73342:intron |
| TCCTGATGAGACATACAATG+AGG | 0.684855 | 2.4:+52659503 | MS.gene73342:CDS |
| TATTAAGGATACCTACCATG+AGG | 0.687526 | 2.4:+52656286 | MS.gene73342:CDS |
| TTGAAAGGTTCCTACCGCCG+GGG | 0.687655 | 2.4:-52663283 | None:intergenic |
| ACTAACAGACATGCTACGGG+AGG | 0.691587 | 2.4:-52663195 | None:intergenic |
| GCAGACTTATCTATCATCTG+CGG | 0.692866 | 2.4:+52663935 | MS.gene73342:intron |
| ACGACTGTCTCATTGGAACG+TGG | 0.703301 | 2.4:+52658491 | MS.gene73342:CDS |
| GTTTACCTTTAAGATCACGT+AGG | 0.709002 | 2.4:-52654803 | None:intergenic |
| TGGATACAAGACTTACATTG+CGG | 0.710146 | 2.4:+52659470 | MS.gene73342:CDS |
| GCTACTTTCGAGAGCCCCGG+CGG | 0.718614 | 2.4:+52663269 | MS.gene73342:CDS |
| CTAGACCTTCCTCCATACGT+GGG | 0.719164 | 2.4:-52663143 | None:intergenic |
| ACTGTATCTGAAGATGGACG+TGG | 0.748883 | 2.4:+52657925 | MS.gene73342:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 52654505 | 52664052 | 52654505 | ID=MS.gene73342 |
| chr2.4 | mRNA | 52654505 | 52664052 | 52654505 | ID=MS.gene73342.t1;Parent=MS.gene73342 |
| chr2.4 | exon | 52654505 | 52654560 | 52654505 | ID=MS.gene73342.t1.exon1;Parent=MS.gene73342.t1 |
| chr2.4 | CDS | 52654505 | 52654560 | 52654505 | ID=cds.MS.gene73342.t1;Parent=MS.gene73342.t1 |
| chr2.4 | exon | 52654720 | 52654819 | 52654720 | ID=MS.gene73342.t1.exon2;Parent=MS.gene73342.t1 |
| chr2.4 | CDS | 52654720 | 52654819 | 52654720 | ID=cds.MS.gene73342.t1;Parent=MS.gene73342.t1 |
| chr2.4 | exon | 52655612 | 52655680 | 52655612 | ID=MS.gene73342.t1.exon3;Parent=MS.gene73342.t1 |
| chr2.4 | CDS | 52655612 | 52655680 | 52655612 | ID=cds.MS.gene73342.t1;Parent=MS.gene73342.t1 |
| chr2.4 | exon | 52655785 | 52656021 | 52655785 | ID=MS.gene73342.t1.exon4;Parent=MS.gene73342.t1 |
| chr2.4 | CDS | 52655785 | 52656021 | 52655785 | ID=cds.MS.gene73342.t1;Parent=MS.gene73342.t1 |
| chr2.4 | exon | 52656155 | 52656332 | 52656155 | ID=MS.gene73342.t1.exon5;Parent=MS.gene73342.t1 |
| chr2.4 | CDS | 52656155 | 52656332 | 52656155 | ID=cds.MS.gene73342.t1;Parent=MS.gene73342.t1 |
| chr2.4 | exon | 52656414 | 52656546 | 52656414 | ID=MS.gene73342.t1.exon6;Parent=MS.gene73342.t1 |
| chr2.4 | CDS | 52656414 | 52656546 | 52656414 | ID=cds.MS.gene73342.t1;Parent=MS.gene73342.t1 |
| chr2.4 | exon | 52657547 | 52657709 | 52657547 | ID=MS.gene73342.t1.exon7;Parent=MS.gene73342.t1 |
| chr2.4 | CDS | 52657547 | 52657709 | 52657547 | ID=cds.MS.gene73342.t1;Parent=MS.gene73342.t1 |
| chr2.4 | exon | 52657811 | 52657958 | 52657811 | ID=MS.gene73342.t1.exon8;Parent=MS.gene73342.t1 |
| chr2.4 | CDS | 52657811 | 52657958 | 52657811 | ID=cds.MS.gene73342.t1;Parent=MS.gene73342.t1 |
| chr2.4 | exon | 52658083 | 52658183 | 52658083 | ID=MS.gene73342.t1.exon9;Parent=MS.gene73342.t1 |
| chr2.4 | CDS | 52658083 | 52658183 | 52658083 | ID=cds.MS.gene73342.t1;Parent=MS.gene73342.t1 |
| chr2.4 | exon | 52658379 | 52658534 | 52658379 | ID=MS.gene73342.t1.exon10;Parent=MS.gene73342.t1 |
| chr2.4 | CDS | 52658379 | 52658534 | 52658379 | ID=cds.MS.gene73342.t1;Parent=MS.gene73342.t1 |
| chr2.4 | exon | 52659132 | 52659200 | 52659132 | ID=MS.gene73342.t1.exon11;Parent=MS.gene73342.t1 |
| chr2.4 | CDS | 52659132 | 52659200 | 52659132 | ID=cds.MS.gene73342.t1;Parent=MS.gene73342.t1 |
| chr2.4 | exon | 52659302 | 52659370 | 52659302 | ID=MS.gene73342.t1.exon12;Parent=MS.gene73342.t1 |
| chr2.4 | CDS | 52659302 | 52659370 | 52659302 | ID=cds.MS.gene73342.t1;Parent=MS.gene73342.t1 |
| chr2.4 | exon | 52659456 | 52659593 | 52659456 | ID=MS.gene73342.t1.exon13;Parent=MS.gene73342.t1 |
| chr2.4 | CDS | 52659456 | 52659593 | 52659456 | ID=cds.MS.gene73342.t1;Parent=MS.gene73342.t1 |
| chr2.4 | exon | 52659721 | 52659849 | 52659721 | ID=MS.gene73342.t1.exon14;Parent=MS.gene73342.t1 |
| chr2.4 | CDS | 52659721 | 52659849 | 52659721 | ID=cds.MS.gene73342.t1;Parent=MS.gene73342.t1 |
| chr2.4 | exon | 52660265 | 52660412 | 52660265 | ID=MS.gene73342.t1.exon15;Parent=MS.gene73342.t1 |
| chr2.4 | CDS | 52660265 | 52660412 | 52660265 | ID=cds.MS.gene73342.t1;Parent=MS.gene73342.t1 |
| chr2.4 | exon | 52660530 | 52660540 | 52660530 | ID=MS.gene73342.t1.exon16;Parent=MS.gene73342.t1 |
| chr2.4 | CDS | 52660530 | 52660540 | 52660530 | ID=cds.MS.gene73342.t1;Parent=MS.gene73342.t1 |
| chr2.4 | exon | 52661901 | 52662041 | 52661901 | ID=MS.gene73342.t1.exon17;Parent=MS.gene73342.t1 |
| chr2.4 | CDS | 52661901 | 52662041 | 52661901 | ID=cds.MS.gene73342.t1;Parent=MS.gene73342.t1 |
| chr2.4 | exon | 52662272 | 52662397 | 52662272 | ID=MS.gene73342.t1.exon18;Parent=MS.gene73342.t1 |
| chr2.4 | CDS | 52662272 | 52662397 | 52662272 | ID=cds.MS.gene73342.t1;Parent=MS.gene73342.t1 |
| chr2.4 | exon | 52662476 | 52662541 | 52662476 | ID=MS.gene73342.t1.exon19;Parent=MS.gene73342.t1 |
| chr2.4 | CDS | 52662476 | 52662541 | 52662476 | ID=cds.MS.gene73342.t1;Parent=MS.gene73342.t1 |
| chr2.4 | exon | 52663125 | 52663458 | 52663125 | ID=MS.gene73342.t1.exon20;Parent=MS.gene73342.t1 |
| chr2.4 | CDS | 52663125 | 52663458 | 52663125 | ID=cds.MS.gene73342.t1;Parent=MS.gene73342.t1 |
| chr2.4 | exon | 52663590 | 52663792 | 52663590 | ID=MS.gene73342.t1.exon21;Parent=MS.gene73342.t1 |
| chr2.4 | CDS | 52663590 | 52663792 | 52663590 | ID=cds.MS.gene73342.t1;Parent=MS.gene73342.t1 |
| chr2.4 | exon | 52663939 | 52664052 | 52663939 | ID=MS.gene73342.t1.exon22;Parent=MS.gene73342.t1 |
| chr2.4 | CDS | 52663939 | 52664052 | 52663939 | ID=cds.MS.gene73342.t1;Parent=MS.gene73342.t1 |
| Gene Sequence |
| Protein sequence |