Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene73342.t1 | XP_003594974.2 | 99.2 | 962 | 8 | 0 | 1 | 962 | 1 | 962 | 0.00E+00 | 1861.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene73342.t1 | O65570 | 72.2 | 977 | 254 | 7 | 1 | 962 | 1 | 974 | 0.0e+00 | 1410.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene73342.t1 | G7IN22 | 99.2 | 962 | 8 | 0 | 1 | 962 | 1 | 962 | 0.0e+00 | 1861.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050894 | MS.gene73342 | 0.808624 | 2.83E-50 | -1.69E-46 |
MS.gene060398 | MS.gene73342 | 0.897224 | 1.73E-76 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene73342.t1 | MTR_2g036860 | 99.376 | 962 | 6 | 0 | 1 | 962 | 1 | 962 | 0.0 | 1982 |
MS.gene73342.t1 | MTR_4g127660 | 78.571 | 966 | 197 | 6 | 1 | 962 | 1 | 960 | 0.0 | 1558 |
MS.gene73342.t1 | MTR_7g091460 | 46.100 | 1000 | 484 | 13 | 1 | 962 | 1 | 983 | 0.0 | 887 |
MS.gene73342.t1 | MTR_3g463530 | 45.794 | 963 | 442 | 11 | 1 | 962 | 1 | 884 | 0.0 | 846 |
MS.gene73342.t1 | MTR_3g463530 | 47.094 | 826 | 407 | 8 | 1 | 825 | 1 | 797 | 0.0 | 773 |
MS.gene73342.t1 | MTR_3g463530 | 49.724 | 724 | 357 | 5 | 1 | 723 | 1 | 718 | 0.0 | 739 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene73342.t1 | AT4G30160 | 74.438 | 978 | 230 | 9 | 1 | 962 | 1 | 974 | 0.0 | 1473 |
MS.gene73342.t1 | AT4G30160 | 74.438 | 978 | 230 | 9 | 1 | 962 | 1 | 974 | 0.0 | 1473 |
MS.gene73342.t1 | AT4G30160 | 74.438 | 978 | 230 | 9 | 1 | 962 | 1 | 974 | 0.0 | 1473 |
MS.gene73342.t1 | AT4G30160 | 73.759 | 987 | 230 | 10 | 1 | 962 | 1 | 983 | 0.0 | 1464 |
MS.gene73342.t1 | AT5G57320 | 66.530 | 974 | 302 | 9 | 1 | 962 | 1 | 962 | 0.0 | 1338 |
MS.gene73342.t1 | AT5G57320 | 66.530 | 974 | 302 | 9 | 1 | 962 | 1 | 962 | 0.0 | 1338 |
MS.gene73342.t1 | AT2G41740 | 46.138 | 984 | 498 | 7 | 3 | 962 | 1 | 976 | 0.0 | 874 |
MS.gene73342.t1 | AT2G41740 | 46.138 | 984 | 498 | 7 | 3 | 962 | 1 | 976 | 0.0 | 874 |
MS.gene73342.t1 | AT2G29890 | 45.041 | 968 | 491 | 12 | 1 | 962 | 1 | 933 | 0.0 | 829 |
MS.gene73342.t1 | AT2G29890 | 45.041 | 968 | 469 | 13 | 1 | 962 | 1 | 911 | 0.0 | 823 |
MS.gene73342.t1 | AT3G57410 | 52.909 | 739 | 345 | 3 | 1 | 737 | 1 | 738 | 0.0 | 822 |
MS.gene73342.t1 | AT3G57410 | 52.909 | 739 | 345 | 3 | 1 | 737 | 1 | 738 | 0.0 | 822 |
MS.gene73342.t1 | AT3G57410 | 52.909 | 739 | 345 | 3 | 1 | 737 | 1 | 738 | 0.0 | 822 |
MS.gene73342.t1 | AT3G57410 | 52.909 | 739 | 345 | 3 | 1 | 737 | 1 | 738 | 0.0 | 822 |
MS.gene73342.t1 | AT3G57410 | 52.909 | 739 | 345 | 3 | 1 | 737 | 1 | 738 | 0.0 | 822 |
MS.gene73342.t1 | AT3G57410 | 52.909 | 739 | 345 | 3 | 1 | 737 | 1 | 738 | 0.0 | 822 |
MS.gene73342.t1 | AT3G57410 | 52.909 | 739 | 345 | 3 | 1 | 737 | 1 | 738 | 0.0 | 822 |
MS.gene73342.t1 | AT3G57410 | 52.909 | 739 | 345 | 3 | 1 | 737 | 1 | 738 | 0.0 | 822 |
MS.gene73342.t1 | AT2G29890 | 44.928 | 966 | 471 | 12 | 1 | 962 | 1 | 909 | 0.0 | 822 |
MS.gene73342.t1 | AT2G29890 | 44.928 | 966 | 471 | 12 | 1 | 962 | 1 | 909 | 0.0 | 822 |
MS.gene73342.t1 | AT3G57410 | 52.909 | 739 | 345 | 3 | 1 | 737 | 1 | 738 | 0.0 | 820 |
MS.gene73342.t1 | AT3G57410 | 53.022 | 728 | 339 | 3 | 1 | 726 | 1 | 727 | 0.0 | 806 |
MS.gene73342.t1 | AT2G29890 | 43.996 | 966 | 463 | 13 | 1 | 962 | 1 | 892 | 0.0 | 794 |
Find 213 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCCTGAAACTGGGGAATTC+TGG | 0.163784 | 2.4:+52656435 | MS.gene73342:CDS |
CATTTACTCCTTGACGTTTC+AGG | 0.184455 | 2.4:-52658087 | None:intergenic |
GCGGAGTTCAAAGAGAAATT+TGG | 0.195231 | 2.4:+52663954 | MS.gene73342:CDS |
CTTCAATTACTCGAATTATC+TGG | 0.197582 | 2.4:-52657843 | None:intergenic |
CCCCAGAATTCCCCAGTTTC+AGG | 0.225810 | 2.4:-52656437 | None:intergenic |
AATTTGCCATAGGAGGATTT+TGG | 0.234228 | 2.4:-52654766 | None:intergenic |
CAAGAAGGTGGAGTTGCTTC+TGG | 0.234547 | 2.4:+52655920 | MS.gene73342:CDS |
ATGAATTGGAACCATTAAAT+TGG | 0.242292 | 2.4:-52656223 | None:intergenic |
TTAAGTCCAAGTTTGATTCT+TGG | 0.254888 | 2.4:+52657884 | MS.gene73342:CDS |
GGAGGTTGTACAGTATATTA+AGG | 0.263257 | 2.4:+52656271 | MS.gene73342:CDS |
TGATTGCACTGGACATTTAC+AGG | 0.271012 | 2.4:+52658162 | MS.gene73342:CDS |
TTCTTTCACATCTTCTTCTA+TGG | 0.276973 | 2.4:-52663668 | None:intergenic |
AGTAGCAGCTAGTGCATTAA+AGG | 0.277906 | 2.4:-52663252 | None:intergenic |
GTACAGAATCTGAACAGTTT+TGG | 0.287363 | 2.4:+52660296 | MS.gene73342:CDS |
ATGATACCTCGGTCAGTTAA+AGG | 0.289692 | 2.4:+52663437 | MS.gene73342:CDS |
CACAAATAAATGTTATATTC+TGG | 0.303505 | 2.4:+52657607 | MS.gene73342:CDS |
GTTACTCAGATATCTTTGTC+TGG | 0.304298 | 2.4:+52661965 | MS.gene73342:CDS |
GGATTCCTACGTGATCTTAA+AGG | 0.306222 | 2.4:+52654798 | MS.gene73342:CDS |
GGGGAATTCTGGGGTTTCTT+TGG | 0.312705 | 2.4:+52656446 | MS.gene73342:CDS |
GGCAGTTTCTATGAGAGATT+TGG | 0.315841 | 2.4:+52654507 | MS.gene73342:CDS |
TTGAGAAACTGCAACAAAAT+AGG | 0.317332 | 2.4:-52660387 | None:intergenic |
AATGAAGTTTCTTGCTTCTC+AGG | 0.318363 | 2.4:+52659179 | MS.gene73342:CDS |
GATTCTGTACCTTCCCTTTG+TGG | 0.322489 | 2.4:-52660283 | None:intergenic |
TAAATAGTGGACTTGAAATA+TGG | 0.322692 | 2.4:+52654713 | MS.gene73342:intron |
TTAATGGCTGATCCTGAAAC+TGG | 0.338286 | 2.4:+52656425 | MS.gene73342:CDS |
AGCAGAGGATGGAAAGTTAA+TGG | 0.344061 | 2.4:+52656409 | MS.gene73342:intron |
CCTGCTATCTTTACTTGGTC+TGG | 0.345682 | 2.4:+52659769 | MS.gene73342:CDS |
ATCCAGCTCAACTGTCTTGA+TGG | 0.346350 | 2.4:-52655804 | None:intergenic |
CCTTCCATGACAACATATAT+TGG | 0.352063 | 2.4:-52662320 | None:intergenic |
GAATCTGGTGTCGTAGATTT+CGG | 0.352645 | 2.4:-52663335 | None:intergenic |
TAATTCACTGGCTAGCAAAA+TGG | 0.355291 | 2.4:+52659149 | MS.gene73342:CDS |
GAACGTTGCTGGGATTTATC+AGG | 0.361538 | 2.4:-52663173 | None:intergenic |
TGCGTCATGACATCCATTAC+TGG | 0.367590 | 2.4:+52655637 | MS.gene73342:CDS |
TGTATAGCTTGCATATTATC+AGG | 0.369589 | 2.4:-52659561 | None:intergenic |
ATGGTAACTTTGCAGATGTT+GGG | 0.369954 | 2.4:+52662461 | MS.gene73342:intron |
TCCTGAAACTGGGGAATTCT+GGG | 0.370505 | 2.4:+52656436 | MS.gene73342:CDS |
TGTCCAGCTCCTTGGAAAGC+TGG | 0.374668 | 2.4:-52654532 | None:intergenic |
AGGATAGAATGGAATTGAAT+TGG | 0.375728 | 2.4:-52659326 | None:intergenic |
TATTGCTATATACTTCATAA+TGG | 0.378420 | 2.4:+52659745 | MS.gene73342:CDS |
CGGAGTTCAAAGAGAAATTT+GGG | 0.379388 | 2.4:+52663955 | MS.gene73342:CDS |
ATCTTTCAATATTCGTATCC+TGG | 0.380002 | 2.4:+52658457 | MS.gene73342:CDS |
AAATGTTATATTCTGGATTG+TGG | 0.385301 | 2.4:+52657614 | MS.gene73342:CDS |
GCATCCTCTCTATAAGTTCC+TGG | 0.388234 | 2.4:-52659813 | None:intergenic |
TCACCGAGCAGGAAACTTAA+AGG | 0.389184 | 2.4:+52660519 | MS.gene73342:intron |
ACTAGAAGTAAGTGCAGATA+TGG | 0.389659 | 2.4:-52663384 | None:intergenic |
ATCGTGTTCGTGTGCGGGGA+AGG | 0.389967 | 2.4:+52663222 | MS.gene73342:CDS |
TTCAATTACTCGAATTATCT+GGG | 0.390638 | 2.4:-52657842 | None:intergenic |
TCTTTCTTGAATAGATGAAT+TGG | 0.394590 | 2.4:-52656237 | None:intergenic |
ATACGTGGGTGTTCGCCGTT+TGG | 0.395609 | 2.4:-52663129 | None:intergenic |
GGCGTTCATATGGGTAAATC+AGG | 0.400211 | 2.4:-52663717 | None:intergenic |
CAAGACTTACATTGCGGAAA+AGG | 0.402344 | 2.4:+52659476 | MS.gene73342:CDS |
TTCAAAGAATCGGCCTCAAC+GGG | 0.407392 | 2.4:-52657569 | None:intergenic |
TCCTGATCGTGTTCGTGTGC+GGG | 0.410934 | 2.4:+52663217 | MS.gene73342:CDS |
GGGTTTGATTTAGGGGTGAC+TGG | 0.413508 | 2.4:-52663595 | None:intergenic |
TACGTGGGTGTTCGCCGTTT+GGG | 0.414296 | 2.4:-52663128 | None:intergenic |
CGTTGCATTATTCCGCATCC+AGG | 0.416492 | 2.4:+52659530 | MS.gene73342:CDS |
GATGCTAGTATTGCAGAATC+TGG | 0.417284 | 2.4:-52663350 | None:intergenic |
TCAGATATCTTTGTCTGGGT+TGG | 0.423965 | 2.4:+52661970 | MS.gene73342:CDS |
TCCTCATTGTATGTCTCATC+AGG | 0.426503 | 2.4:-52659504 | None:intergenic |
TATCTTTGTCTGGGTTGGCC+AGG | 0.426942 | 2.4:+52661975 | MS.gene73342:CDS |
GAATTCTGGGGTTTCTTTGG+CGG | 0.427483 | 2.4:+52656449 | MS.gene73342:CDS |
ATCCCAGTCAAAAGATTAGT+AGG | 0.428935 | 2.4:+52660344 | MS.gene73342:CDS |
GAGTGCCTGCATTCTACTCT+TGG | 0.430508 | 2.4:-52662007 | None:intergenic |
CTTCTGTCATTAAATCATCC+TGG | 0.440191 | 2.4:-52661924 | None:intergenic |
AGAAAGAGCTAAAGCTTTGG+AGG | 0.440477 | 2.4:+52656253 | MS.gene73342:CDS |
TCAAGAAAGAGCTAAAGCTT+TGG | 0.440709 | 2.4:+52656250 | MS.gene73342:CDS |
TCTTCAGATACAGTTACATC+AGG | 0.444973 | 2.4:-52657916 | None:intergenic |
TATTATCAGGTCCAGTGCCC+TGG | 0.445046 | 2.4:-52659548 | None:intergenic |
CAGATAATTCGAGTAATTGA+AGG | 0.449123 | 2.4:+52657844 | MS.gene73342:CDS |
GATCCAGCTTTCCAAGGAGC+TGG | 0.449721 | 2.4:+52654529 | MS.gene73342:CDS |
TGTTCAGTATCGGGAAGTAC+AGG | 0.451092 | 2.4:+52655847 | MS.gene73342:CDS |
TTGAGGCCGATTCTTTGAAA+AGG | 0.452089 | 2.4:+52657573 | MS.gene73342:CDS |
TGAAGGTTTGTAGGATAGAA+TGG | 0.453160 | 2.4:-52659337 | None:intergenic |
TTACTCAGATATCTTTGTCT+GGG | 0.454519 | 2.4:+52661966 | MS.gene73342:CDS |
ATGAAGTATATAGCAATAAG+AGG | 0.456334 | 2.4:-52659740 | None:intergenic |
CCTTCTTGAGGTATAATACA+AGG | 0.457365 | 2.4:-52655905 | None:intergenic |
GATAAGGACGACTGTCTCAT+TGG | 0.462084 | 2.4:+52658484 | MS.gene73342:CDS |
ATGGACCTGCTATCTTTACT+TGG | 0.463130 | 2.4:+52659764 | MS.gene73342:CDS |
GTTGGAAATGTTCGTCTGGA+TGG | 0.465224 | 2.4:+52657637 | MS.gene73342:CDS |
CTGAGGCCAAGAATCAAACT+TGG | 0.474669 | 2.4:-52657890 | None:intergenic |
AGTTGAAAGGTTCCTACCGC+CGG | 0.478867 | 2.4:-52663285 | None:intergenic |
GATGGACGTGGCAAGGTAGC+AGG | 0.479029 | 2.4:+52657937 | MS.gene73342:CDS |
CCCCGCACACGAACACGATC+AGG | 0.479194 | 2.4:-52663218 | None:intergenic |
CAACCTTACATTGATTGCAC+TGG | 0.482870 | 2.4:+52658151 | MS.gene73342:CDS |
AGGACGTGCTGTTCAGTATC+GGG | 0.483979 | 2.4:+52655838 | MS.gene73342:CDS |
GCAAGCTATACAAGTTGAAC+CGG | 0.486174 | 2.4:+52659572 | MS.gene73342:CDS |
GAGGATGCTGGATATGATAA+AGG | 0.486562 | 2.4:+52659828 | MS.gene73342:CDS |
TTTCTCAGGGTTTGATTTAG+GGG | 0.486825 | 2.4:-52663602 | None:intergenic |
TGAGGCCGATTCTTTGAAAA+GGG | 0.489520 | 2.4:+52657574 | MS.gene73342:CDS |
TTATTCCGCATCCAGGGCAC+TGG | 0.492358 | 2.4:+52659537 | MS.gene73342:CDS |
TGATAATAACTTTACCTGAC+TGG | 0.493743 | 2.4:-52655673 | None:intergenic |
TGCTACGGGAGGAACGTTGC+TGG | 0.494003 | 2.4:-52663184 | None:intergenic |
GTTGAAAGGTTCCTACCGCC+GGG | 0.494138 | 2.4:-52663284 | None:intergenic |
AGAATGCAGGCACTCACAAT+TGG | 0.495521 | 2.4:+52662015 | MS.gene73342:CDS |
AATGTTATATTCTGGATTGT+GGG | 0.495607 | 2.4:+52657615 | MS.gene73342:CDS |
ATAGCAATAAGAGGAATTCA+AGG | 0.497482 | 2.4:-52659731 | None:intergenic |
GTTGAAAGCTGATGCAGTAA+AGG | 0.498606 | 2.4:+52658120 | MS.gene73342:CDS |
CATGACATCCATTACTGGAT+TGG | 0.498777 | 2.4:+52655642 | MS.gene73342:CDS |
TGTCCAGTGCAATCAATGTA+AGG | 0.499951 | 2.4:-52658154 | None:intergenic |
CAGTCGTCCTTATCTTCTCC+AGG | 0.501958 | 2.4:-52658475 | None:intergenic |
TTTACAATCAAAACCACAAA+GGG | 0.502772 | 2.4:+52660270 | MS.gene73342:CDS |
CCAATATATGTTGTCATGGA+AGG | 0.508420 | 2.4:+52662320 | MS.gene73342:CDS |
TTTCCAAGGAGCTGGACAAA+AGG | 0.508529 | 2.4:+52654537 | MS.gene73342:CDS |
CTATCTCGCATTTCCCCTCA+TGG | 0.511015 | 2.4:-52656301 | None:intergenic |
TTTAGTGAAGATCGAGCAAA+AGG | 0.511406 | 2.4:-52656158 | None:intergenic |
AAATGCGAGATAGCTGCTAT+TGG | 0.513483 | 2.4:+52656311 | MS.gene73342:CDS |
TGTCTCATTGGAACGTGGAT+AGG | 0.513559 | 2.4:+52658496 | MS.gene73342:CDS |
GAGGACGTGCTGTTCAGTAT+CGG | 0.513997 | 2.4:+52655837 | MS.gene73342:CDS |
GTGGGTTGGAAATGTTCGTC+TGG | 0.515021 | 2.4:+52657633 | MS.gene73342:CDS |
CAGGTCCAGTGCCCTGGATG+CGG | 0.516873 | 2.4:-52659542 | None:intergenic |
TACAAGGTTTGAAATAAGAA+AGG | 0.520144 | 2.4:-52655889 | None:intergenic |
TTCGTATCCTGGAGAAGATA+AGG | 0.521373 | 2.4:+52658468 | MS.gene73342:CDS |
TTCTGTCATTAAATCATCCT+GGG | 0.521470 | 2.4:-52661923 | None:intergenic |
TTATATTCTGGATTGTGGGT+TGG | 0.521892 | 2.4:+52657619 | MS.gene73342:CDS |
GCAGCTAGTGCATTAAAGGC+TGG | 0.528598 | 2.4:-52663248 | None:intergenic |
AGCAGACTTATCATTATCAC+TGG | 0.530775 | 2.4:-52656498 | None:intergenic |
CCTGTCCCAAAATCCTCCTA+TGG | 0.532614 | 2.4:+52654760 | MS.gene73342:CDS |
GATGTAACTGTATCTGAAGA+TGG | 0.533885 | 2.4:+52657919 | MS.gene73342:CDS |
GTTACATCAATGTCTGGCAC+AGG | 0.534839 | 2.4:-52663760 | None:intergenic |
TTTCAAAGAATCGGCCTCAA+CGG | 0.535729 | 2.4:-52657570 | None:intergenic |
CAGGACTAACAGACATGCTA+CGG | 0.539604 | 2.4:-52663199 | None:intergenic |
GTCCTGATCGTGTTCGTGTG+CGG | 0.539842 | 2.4:+52663216 | MS.gene73342:CDS |
CTTTGTCTGGGTTGGCCAGG+AGG | 0.540109 | 2.4:+52661978 | MS.gene73342:CDS |
TTGGAAATGTTCGTCTGGAT+GGG | 0.540387 | 2.4:+52657638 | MS.gene73342:CDS |
CAATACAACTGCAGAAGACC+AGG | 0.543128 | 2.4:+52659795 | MS.gene73342:CDS |
ATAGAAGAAGATGTGAAAGA+AGG | 0.544384 | 2.4:+52663670 | MS.gene73342:CDS |
TATCAGGGAGGGCTTAGTGA+TGG | 0.545709 | 2.4:+52659450 | MS.gene73342:intron |
TACTCTTGGAATCAACCTCC+TGG | 0.547696 | 2.4:-52661993 | None:intergenic |
AAACGGCGAACACCCACGTA+TGG | 0.547897 | 2.4:+52663131 | MS.gene73342:CDS |
GGTTTGGCGCGTGAACGGTC+AGG | 0.549073 | 2.4:+52658378 | MS.gene73342:intron |
TGTTGGGGAACTCATTTCAA+AGG | 0.549818 | 2.4:+52662477 | MS.gene73342:CDS |
GCTACGGGAGGAACGTTGCT+GGG | 0.550775 | 2.4:-52663183 | None:intergenic |
GATTTGGATCCAGCTTTCCA+AGG | 0.552924 | 2.4:+52654523 | MS.gene73342:CDS |
TACATTATCAGAAACCCAAA+CGG | 0.553312 | 2.4:+52663114 | MS.gene73342:intron |
CTGTAGGCTCGAATATATGA+AGG | 0.554261 | 2.4:+52659296 | MS.gene73342:intron |
CACGGTTGTTTGTATGCAGA+GGG | 0.554681 | 2.4:+52655975 | MS.gene73342:CDS |
AAGAGCTTCAGCTAATTCAC+TGG | 0.554814 | 2.4:+52659137 | MS.gene73342:CDS |
GTTGAGCTGGATGCAGCTCT+CGG | 0.559008 | 2.4:+52655815 | MS.gene73342:CDS |
TTACAGTGTTGAAAAGGGAC+TGG | 0.560938 | 2.4:+52657541 | MS.gene73342:intron |
ATCATAGTTTCTCGTGCAGA+AGG | 0.563119 | 2.4:-52663419 | None:intergenic |
CTCACTCTACAAAACTGCTT+AGG | 0.564026 | 2.4:+52656525 | MS.gene73342:CDS |
ATCTGAAGATGGACGTGGCA+AGG | 0.564373 | 2.4:+52657930 | MS.gene73342:CDS |
CCAGACCAAGTAAAGATAGC+AGG | 0.568264 | 2.4:-52659769 | None:intergenic |
CTTCAGATACAGTTACATCA+GGG | 0.572311 | 2.4:-52657915 | None:intergenic |
AGCCATCAAGACAGTTGAGC+TGG | 0.572361 | 2.4:+52655802 | MS.gene73342:CDS |
GGAACTTATAGAGAGGATGC+TGG | 0.572818 | 2.4:+52659816 | MS.gene73342:CDS |
GATTGGTAAAGACACCAGTC+AGG | 0.573421 | 2.4:+52655659 | MS.gene73342:CDS |
GTGCAATCAATGTAAGGTTG+AGG | 0.575078 | 2.4:-52658148 | None:intergenic |
TGGTAACTTTGCAGATGTTG+GGG | 0.577791 | 2.4:+52662462 | MS.gene73342:intron |
TAATGGCTGATCCTGAAACT+GGG | 0.580468 | 2.4:+52656426 | MS.gene73342:CDS |
CTTTCGAGAGCCCCGGCGGT+AGG | 0.580721 | 2.4:+52663273 | MS.gene73342:CDS |
TGATTCCAAGAGTAGAATGC+AGG | 0.583411 | 2.4:+52662002 | MS.gene73342:CDS |
TGTCTTTACCAATCCAGTAA+TGG | 0.589112 | 2.4:-52655650 | None:intergenic |
TCCCAGTCAAAAGATTAGTA+GGG | 0.590135 | 2.4:+52660345 | MS.gene73342:CDS |
GGCTCCAATATATGTTGTCA+TGG | 0.590221 | 2.4:+52662316 | MS.gene73342:CDS |
CCTGATCGTGTTCGTGTGCG+GGG | 0.591569 | 2.4:+52663218 | MS.gene73342:CDS |
ACAGTTACATCAGGGGTCTG+AGG | 0.591805 | 2.4:-52657907 | None:intergenic |
CGGCGAACACCCACGTATGG+AGG | 0.593381 | 2.4:+52663134 | MS.gene73342:CDS |
TTACTGGAGGTGGAGTTGAA+AGG | 0.597606 | 2.4:-52663298 | None:intergenic |
AGAGAAATTTGGGATGTCCA+AGG | 0.597849 | 2.4:+52663965 | MS.gene73342:CDS |
AGAAGGCGAAGCTGAAGATG+AGG | 0.600007 | 2.4:+52663687 | MS.gene73342:CDS |
GAAGCAACTCCACCTTCTTG+AGG | 0.601221 | 2.4:-52655917 | None:intergenic |
CACGAGAAACTATGATACCT+CGG | 0.603581 | 2.4:+52663426 | MS.gene73342:CDS |
CAATATATGTTGTCATGGAA+GGG | 0.604158 | 2.4:+52662321 | MS.gene73342:CDS |
GTACAGGTTTGGCGCGTGAA+CGG | 0.605475 | 2.4:+52658373 | MS.gene73342:intron |
CCTTGTATTATACCTCAAGA+AGG | 0.606272 | 2.4:+52655905 | MS.gene73342:CDS |
CCTGAAACTGGGGAATTCTG+GGG | 0.606517 | 2.4:+52656437 | MS.gene73342:CDS |
ACACGGTTGTTTGTATGCAG+AGG | 0.610026 | 2.4:+52655974 | MS.gene73342:CDS |
GTTGCATTATTCCGCATCCA+GGG | 0.613586 | 2.4:+52659531 | MS.gene73342:CDS |
ACTAGACCTTCCTCCATACG+TGG | 0.613657 | 2.4:-52663144 | None:intergenic |
TCAATTACTCGAATTATCTG+GGG | 0.614977 | 2.4:-52657841 | None:intergenic |
TGTTTACCTTTAACTGACCG+AGG | 0.615991 | 2.4:-52663443 | None:intergenic |
GACAAGGAGAATTCGGTGAG+CGG | 0.616082 | 2.4:+52663628 | MS.gene73342:CDS |
ATAGTTTCTCGTGCAGAAGG+TGG | 0.618217 | 2.4:-52663416 | None:intergenic |
AGGACTAACAGACATGCTAC+GGG | 0.618333 | 2.4:-52663198 | None:intergenic |
ATTAAGGATACCTACCATGA+GGG | 0.621121 | 2.4:+52656287 | MS.gene73342:CDS |
GTTCAGTATCGGGAAGTACA+GGG | 0.622918 | 2.4:+52655848 | MS.gene73342:CDS |
AATGGCTGATCCTGAAACTG+GGG | 0.624892 | 2.4:+52656427 | MS.gene73342:CDS |
ACGTCAAGGAGTAAATGTCA+AGG | 0.628911 | 2.4:+52658093 | MS.gene73342:CDS |
CTCGCATTTCCCCTCATGGT+AGG | 0.630514 | 2.4:-52656297 | None:intergenic |
ATTTACAATCAAAACCACAA+AGG | 0.632843 | 2.4:+52660269 | MS.gene73342:CDS |
GGCGAAGCTGAAGATGAGGA+AGG | 0.634058 | 2.4:+52663691 | MS.gene73342:CDS |
GAACACCCACGTATGGAGGA+AGG | 0.634412 | 2.4:+52663138 | MS.gene73342:CDS |
CATTGATGTAACTAAAAGAG+AGG | 0.637052 | 2.4:+52663771 | MS.gene73342:CDS |
CAATCAAAACCACAAAGGGA+AGG | 0.637162 | 2.4:+52660274 | MS.gene73342:CDS |
CGTCAAGGAGTAAATGTCAA+GGG | 0.639535 | 2.4:+52658094 | MS.gene73342:CDS |
GCTGCTACTTTCGAGAGCCC+CGG | 0.641229 | 2.4:+52663266 | MS.gene73342:CDS |
TGTATTATACCTCAAGAAGG+TGG | 0.646499 | 2.4:+52655908 | MS.gene73342:CDS |
GTAGCACTCCTGAAACGTCA+AGG | 0.647028 | 2.4:+52658079 | MS.gene73342:intron |
GCATGTTGTACATGTCAAAG+AGG | 0.649688 | 2.4:+52656000 | MS.gene73342:CDS |
CAGTCAAAAGATTAGTAGGG+AGG | 0.650775 | 2.4:+52660348 | MS.gene73342:CDS |
GAAATGTGCCTTACATCCAA+TGG | 0.653886 | 2.4:-52662533 | None:intergenic |
GGGACTGGCAGAACCCGTTG+AGG | 0.658697 | 2.4:+52657556 | MS.gene73342:CDS |
AAGACCAGGAACTTATAGAG+AGG | 0.660282 | 2.4:+52659809 | MS.gene73342:CDS |
GAGCTGGATGCAGCTCTCGG+AGG | 0.665227 | 2.4:+52655818 | MS.gene73342:CDS |
AAACTGCAACAAAATAGGTG+AGG | 0.665492 | 2.4:-52660382 | None:intergenic |
GATAGGAAAGAACAGTGTTG+AGG | 0.666799 | 2.4:+52658513 | MS.gene73342:CDS |
GGAGATATACAACTTCTCCC+AGG | 0.669877 | 2.4:+52661906 | MS.gene73342:CDS |
TTCAGATACAGTTACATCAG+GGG | 0.671783 | 2.4:-52657914 | None:intergenic |
GCAGGCACTCACAATTGGCG+AGG | 0.675142 | 2.4:+52662020 | MS.gene73342:CDS |
TTAAGGATACCTACCATGAG+GGG | 0.677686 | 2.4:+52656288 | MS.gene73342:CDS |
AAATAACAGGAGTTAGTCAG+TGG | 0.680430 | 2.4:+52657802 | MS.gene73342:intron |
TCCTGATGAGACATACAATG+AGG | 0.684855 | 2.4:+52659503 | MS.gene73342:CDS |
TATTAAGGATACCTACCATG+AGG | 0.687526 | 2.4:+52656286 | MS.gene73342:CDS |
TTGAAAGGTTCCTACCGCCG+GGG | 0.687655 | 2.4:-52663283 | None:intergenic |
ACTAACAGACATGCTACGGG+AGG | 0.691587 | 2.4:-52663195 | None:intergenic |
GCAGACTTATCTATCATCTG+CGG | 0.692866 | 2.4:+52663935 | MS.gene73342:intron |
ACGACTGTCTCATTGGAACG+TGG | 0.703301 | 2.4:+52658491 | MS.gene73342:CDS |
GTTTACCTTTAAGATCACGT+AGG | 0.709002 | 2.4:-52654803 | None:intergenic |
TGGATACAAGACTTACATTG+CGG | 0.710146 | 2.4:+52659470 | MS.gene73342:CDS |
GCTACTTTCGAGAGCCCCGG+CGG | 0.718614 | 2.4:+52663269 | MS.gene73342:CDS |
CTAGACCTTCCTCCATACGT+GGG | 0.719164 | 2.4:-52663143 | None:intergenic |
ACTGTATCTGAAGATGGACG+TGG | 0.748883 | 2.4:+52657925 | MS.gene73342:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 52654505 | 52664052 | 52654505 | ID=MS.gene73342 |
chr2.4 | mRNA | 52654505 | 52664052 | 52654505 | ID=MS.gene73342.t1;Parent=MS.gene73342 |
chr2.4 | exon | 52654505 | 52654560 | 52654505 | ID=MS.gene73342.t1.exon1;Parent=MS.gene73342.t1 |
chr2.4 | CDS | 52654505 | 52654560 | 52654505 | ID=cds.MS.gene73342.t1;Parent=MS.gene73342.t1 |
chr2.4 | exon | 52654720 | 52654819 | 52654720 | ID=MS.gene73342.t1.exon2;Parent=MS.gene73342.t1 |
chr2.4 | CDS | 52654720 | 52654819 | 52654720 | ID=cds.MS.gene73342.t1;Parent=MS.gene73342.t1 |
chr2.4 | exon | 52655612 | 52655680 | 52655612 | ID=MS.gene73342.t1.exon3;Parent=MS.gene73342.t1 |
chr2.4 | CDS | 52655612 | 52655680 | 52655612 | ID=cds.MS.gene73342.t1;Parent=MS.gene73342.t1 |
chr2.4 | exon | 52655785 | 52656021 | 52655785 | ID=MS.gene73342.t1.exon4;Parent=MS.gene73342.t1 |
chr2.4 | CDS | 52655785 | 52656021 | 52655785 | ID=cds.MS.gene73342.t1;Parent=MS.gene73342.t1 |
chr2.4 | exon | 52656155 | 52656332 | 52656155 | ID=MS.gene73342.t1.exon5;Parent=MS.gene73342.t1 |
chr2.4 | CDS | 52656155 | 52656332 | 52656155 | ID=cds.MS.gene73342.t1;Parent=MS.gene73342.t1 |
chr2.4 | exon | 52656414 | 52656546 | 52656414 | ID=MS.gene73342.t1.exon6;Parent=MS.gene73342.t1 |
chr2.4 | CDS | 52656414 | 52656546 | 52656414 | ID=cds.MS.gene73342.t1;Parent=MS.gene73342.t1 |
chr2.4 | exon | 52657547 | 52657709 | 52657547 | ID=MS.gene73342.t1.exon7;Parent=MS.gene73342.t1 |
chr2.4 | CDS | 52657547 | 52657709 | 52657547 | ID=cds.MS.gene73342.t1;Parent=MS.gene73342.t1 |
chr2.4 | exon | 52657811 | 52657958 | 52657811 | ID=MS.gene73342.t1.exon8;Parent=MS.gene73342.t1 |
chr2.4 | CDS | 52657811 | 52657958 | 52657811 | ID=cds.MS.gene73342.t1;Parent=MS.gene73342.t1 |
chr2.4 | exon | 52658083 | 52658183 | 52658083 | ID=MS.gene73342.t1.exon9;Parent=MS.gene73342.t1 |
chr2.4 | CDS | 52658083 | 52658183 | 52658083 | ID=cds.MS.gene73342.t1;Parent=MS.gene73342.t1 |
chr2.4 | exon | 52658379 | 52658534 | 52658379 | ID=MS.gene73342.t1.exon10;Parent=MS.gene73342.t1 |
chr2.4 | CDS | 52658379 | 52658534 | 52658379 | ID=cds.MS.gene73342.t1;Parent=MS.gene73342.t1 |
chr2.4 | exon | 52659132 | 52659200 | 52659132 | ID=MS.gene73342.t1.exon11;Parent=MS.gene73342.t1 |
chr2.4 | CDS | 52659132 | 52659200 | 52659132 | ID=cds.MS.gene73342.t1;Parent=MS.gene73342.t1 |
chr2.4 | exon | 52659302 | 52659370 | 52659302 | ID=MS.gene73342.t1.exon12;Parent=MS.gene73342.t1 |
chr2.4 | CDS | 52659302 | 52659370 | 52659302 | ID=cds.MS.gene73342.t1;Parent=MS.gene73342.t1 |
chr2.4 | exon | 52659456 | 52659593 | 52659456 | ID=MS.gene73342.t1.exon13;Parent=MS.gene73342.t1 |
chr2.4 | CDS | 52659456 | 52659593 | 52659456 | ID=cds.MS.gene73342.t1;Parent=MS.gene73342.t1 |
chr2.4 | exon | 52659721 | 52659849 | 52659721 | ID=MS.gene73342.t1.exon14;Parent=MS.gene73342.t1 |
chr2.4 | CDS | 52659721 | 52659849 | 52659721 | ID=cds.MS.gene73342.t1;Parent=MS.gene73342.t1 |
chr2.4 | exon | 52660265 | 52660412 | 52660265 | ID=MS.gene73342.t1.exon15;Parent=MS.gene73342.t1 |
chr2.4 | CDS | 52660265 | 52660412 | 52660265 | ID=cds.MS.gene73342.t1;Parent=MS.gene73342.t1 |
chr2.4 | exon | 52660530 | 52660540 | 52660530 | ID=MS.gene73342.t1.exon16;Parent=MS.gene73342.t1 |
chr2.4 | CDS | 52660530 | 52660540 | 52660530 | ID=cds.MS.gene73342.t1;Parent=MS.gene73342.t1 |
chr2.4 | exon | 52661901 | 52662041 | 52661901 | ID=MS.gene73342.t1.exon17;Parent=MS.gene73342.t1 |
chr2.4 | CDS | 52661901 | 52662041 | 52661901 | ID=cds.MS.gene73342.t1;Parent=MS.gene73342.t1 |
chr2.4 | exon | 52662272 | 52662397 | 52662272 | ID=MS.gene73342.t1.exon18;Parent=MS.gene73342.t1 |
chr2.4 | CDS | 52662272 | 52662397 | 52662272 | ID=cds.MS.gene73342.t1;Parent=MS.gene73342.t1 |
chr2.4 | exon | 52662476 | 52662541 | 52662476 | ID=MS.gene73342.t1.exon19;Parent=MS.gene73342.t1 |
chr2.4 | CDS | 52662476 | 52662541 | 52662476 | ID=cds.MS.gene73342.t1;Parent=MS.gene73342.t1 |
chr2.4 | exon | 52663125 | 52663458 | 52663125 | ID=MS.gene73342.t1.exon20;Parent=MS.gene73342.t1 |
chr2.4 | CDS | 52663125 | 52663458 | 52663125 | ID=cds.MS.gene73342.t1;Parent=MS.gene73342.t1 |
chr2.4 | exon | 52663590 | 52663792 | 52663590 | ID=MS.gene73342.t1.exon21;Parent=MS.gene73342.t1 |
chr2.4 | CDS | 52663590 | 52663792 | 52663590 | ID=cds.MS.gene73342.t1;Parent=MS.gene73342.t1 |
chr2.4 | exon | 52663939 | 52664052 | 52663939 | ID=MS.gene73342.t1.exon22;Parent=MS.gene73342.t1 |
chr2.4 | CDS | 52663939 | 52664052 | 52663939 | ID=cds.MS.gene73342.t1;Parent=MS.gene73342.t1 |
Gene Sequence |
Protein sequence |