Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene73343.t1 | AES65228.2 | 87.3 | 708 | 76 | 3 | 121 | 815 | 11 | 717 | 0.00E+00 | 1191 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene73343.t1 | B6JX19 | 38.1 | 480 | 271 | 8 | 347 | 817 | 157 | 619 | 1.5e-92 | 342.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene73343.t1 | G7IN25 | 87.3 | 708 | 76 | 3 | 121 | 815 | 11 | 717 | 0.0e+00 | 1191.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene73343 | MS.gene033253 | PPI |
MS.gene73343 | MS.gene47512 | PPI |
MS.gene73343 | MS.gene48368 | PPI |
MS.gene73343 | MS.gene26564 | PPI |
MS.gene73343 | MS.gene56868 | PPI |
MS.gene73343 | MS.gene060830 | PPI |
MS.gene73343 | MS.gene008731 | PPI |
MS.gene73343 | MS.gene39589 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene73343.t1 | MTR_2g036890 | 90.254 | 708 | 55 | 3 | 121 | 815 | 11 | 717 | 0.0 | 1229 |
MS.gene73343.t1 | MTR_2g036890 | 91.730 | 653 | 42 | 1 | 175 | 815 | 1 | 653 | 0.0 | 1193 |
MS.gene73343.t1 | MTR_2g012650 | 84.141 | 681 | 92 | 2 | 151 | 815 | 65 | 745 | 0.0 | 1136 |
MS.gene73343.t1 | MTR_2g012650 | 85.518 | 656 | 79 | 2 | 175 | 814 | 1 | 656 | 0.0 | 1115 |
MS.gene73343.t1 | MTR_2g012650 | 85.388 | 657 | 80 | 2 | 175 | 815 | 1 | 657 | 0.0 | 1114 |
MS.gene73343.t1 | MTR_2g036890 | 89.839 | 620 | 51 | 1 | 175 | 782 | 1 | 620 | 0.0 | 1101 |
MS.gene73343.t1 | MTR_2g012650 | 85.759 | 632 | 74 | 2 | 175 | 790 | 1 | 632 | 0.0 | 1075 |
MS.gene73343.t1 | MTR_2g012650 | 84.227 | 634 | 85 | 1 | 150 | 768 | 65 | 698 | 0.0 | 1061 |
MS.gene73343.t1 | MTR_4g415340 | 84.211 | 304 | 18 | 2 | 175 | 478 | 1 | 274 | 6.56e-159 | 466 |
MS.gene73343.t1 | MTR_8g466490 | 52.778 | 288 | 99 | 5 | 568 | 820 | 56 | 341 | 3.81e-82 | 268 |
MS.gene73343.t1 | MTR_8g466500 | 46.996 | 283 | 129 | 7 | 285 | 548 | 59 | 339 | 2.75e-68 | 231 |
MS.gene73343.t1 | MTR_1g100355 | 68.333 | 120 | 7 | 1 | 1 | 120 | 25 | 113 | 4.16e-45 | 158 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene73343.t1 | AT1G17690 | 52.932 | 614 | 255 | 10 | 228 | 811 | 118 | 727 | 0.0 | 638 |
Find 178 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCTTCAAGCCTAGCCAATT+TGG | 0.199593 | 2.4:+52626356 | None:intergenic |
AATTCTGATGACAATGATTC+TGG | 0.228686 | 2.4:-52627994 | MS.gene73343:CDS |
TTACAGGCAGACAATAATTA+TGG | 0.233839 | 2.4:-52619777 | MS.gene73343:CDS |
GCACGTGGTTGGTTCTTTAA+AGG | 0.249798 | 2.4:-52612403 | MS.gene73343:CDS |
AGCTGAATTTCAAGTTCTTT+TGG | 0.251291 | 2.4:+52627413 | None:intergenic |
CTTCCCACAACATTAATTCT+AGG | 0.266261 | 2.4:+52628027 | None:intergenic |
AGATTATAAAGACTTATATT+TGG | 0.279519 | 2.4:-52610957 | MS.gene73343:CDS |
TATTGCTTCACCACTTTGTT+TGG | 0.281942 | 2.4:-52623958 | MS.gene73343:CDS |
AGCTGGGATGTACCAGTTAT+TGG | 0.284670 | 2.4:-52627394 | MS.gene73343:CDS |
AAGAGACCATTCTATCTAAA+AGG | 0.285140 | 2.4:-52626544 | MS.gene73343:CDS |
TTTGCATTCAGTTTCATGTT+AGG | 0.310591 | 2.4:-52632457 | MS.gene73343:CDS |
GGGTAAAGCTCCTTCCTCTC+TGG | 0.315446 | 2.4:+52612096 | None:intergenic |
TGTCGCTTCTTCATAATGTT+AGG | 0.318030 | 2.4:+52629847 | None:intergenic |
CTATATCACTTAGTTTCTTA+AGG | 0.322133 | 2.4:-52632293 | MS.gene73343:CDS |
ATTCAGATGAAGGGGATATT+AGG | 0.324322 | 2.4:-52627927 | MS.gene73343:CDS |
ATGCCTCCTTCTGTCTGGTT+GGG | 0.332555 | 2.4:-52612554 | MS.gene73343:CDS |
AATGCGCATAACATCTGTTC+TGG | 0.338130 | 2.4:+52621003 | None:intergenic |
CACGTGGTTGGTTCTTTAAA+GGG | 0.345972 | 2.4:-52612402 | MS.gene73343:CDS |
TATTGTCTGCCTGTAAAATC+TGG | 0.355553 | 2.4:+52619784 | None:intergenic |
AAGACGACGGCGAGGTAAAC+AGG | 0.358944 | 2.4:+52632251 | None:intergenic |
CAATTTGAGACACCAATAAC+TGG | 0.360980 | 2.4:+52627382 | None:intergenic |
CCAGACAGAAGGAGGCATTC+TGG | 0.363317 | 2.4:+52612559 | None:intergenic |
GACATGTGTACACAATGAAT+TGG | 0.374293 | 2.4:+52632726 | None:intergenic |
AATGATTCTGGATTAATAGA+AGG | 0.374743 | 2.4:-52627982 | MS.gene73343:CDS |
ACTTGTTGCATGGAGAGATA+TGG | 0.376399 | 2.4:+52632783 | None:intergenic |
TCAGGTCAATGCTGAGCATA+TGG | 0.398026 | 2.4:-52624444 | MS.gene73343:intron |
AATGAGGATAACTTTATGAT+TGG | 0.398516 | 2.4:-52624338 | MS.gene73343:CDS |
CTGAGGATTCAGTGGATTTG+AGG | 0.400017 | 2.4:-52627885 | MS.gene73343:intron |
TCCATTTGCAGATTGTAAAT+CGG | 0.402431 | 2.4:-52611568 | MS.gene73343:intron |
TACAGGCAGACAATAATTAT+GGG | 0.403860 | 2.4:-52619776 | MS.gene73343:CDS |
CATTAAATCTGTGAACTTGC+TGG | 0.406333 | 2.4:-52628645 | MS.gene73343:CDS |
TACATTCCAGTCATCCGGTT+TGG | 0.411140 | 2.4:+52624376 | None:intergenic |
GAGTAGGGCAATCACCTCTA+TGG | 0.414323 | 2.4:+52621334 | None:intergenic |
CAGACAGAAGGAGGCATTCT+GGG | 0.415252 | 2.4:+52612560 | None:intergenic |
CCATGATGCTTGTGTCTTCG+AGG | 0.416955 | 2.4:+52626521 | None:intergenic |
AATAAATTCGATGTAAGAAC+TGG | 0.419792 | 2.4:+52612605 | None:intergenic |
TTGCATTCAGTTTCATGTTA+GGG | 0.423678 | 2.4:-52632456 | MS.gene73343:CDS |
ACTTGTCGAGGCGTGAGAAA+AGG | 0.428060 | 2.4:+52611513 | None:intergenic |
TGATTGGCATCAAATTTACT+AGG | 0.430597 | 2.4:-52624322 | MS.gene73343:intron |
ATCCATCCAAACCGGATGAC+TGG | 0.430763 | 2.4:-52624382 | MS.gene73343:CDS |
CCAGAATGCCTCCTTCTGTC+TGG | 0.431283 | 2.4:-52612559 | MS.gene73343:CDS |
TCTGTTCTGGGCTGCGTAGA+TGG | 0.432566 | 2.4:+52621016 | None:intergenic |
GTCGCTTCTTCATAATGTTA+GGG | 0.432646 | 2.4:+52629848 | None:intergenic |
CTCACGCCTCGACAAGTATC+GGG | 0.433043 | 2.4:-52611507 | MS.gene73343:CDS |
AACTAAGTGATATAGAAATC+AGG | 0.433270 | 2.4:+52632301 | None:intergenic |
CACCAGTGTTCTAATTATGA+AGG | 0.436636 | 2.4:-52618850 | MS.gene73343:CDS |
TACGCTGCCGTTTCCACCTC+CGG | 0.437090 | 2.4:-52630033 | MS.gene73343:CDS |
TGGTTCCAGGCAGCAGCTAC+CGG | 0.443646 | 2.4:-52626585 | MS.gene73343:intron |
ACATGTGTACACAATGAATT+GGG | 0.446894 | 2.4:+52632727 | None:intergenic |
GGTAAAGCTCCTTCCTCTCT+GGG | 0.447651 | 2.4:+52612097 | None:intergenic |
ATCCTTGCCTCCAGATGTCT+TGG | 0.447804 | 2.4:+52626882 | None:intergenic |
TTGGTGTCTCAAATTGCAAA+TGG | 0.448270 | 2.4:-52627375 | MS.gene73343:CDS |
TCTCACGCCTCGACAAGTAT+CGG | 0.449787 | 2.4:-52611508 | MS.gene73343:CDS |
AAAAGAACTTGAAATTCAGC+TGG | 0.452920 | 2.4:-52627411 | MS.gene73343:CDS |
CCATAACAGGACATACTTAA+CGG | 0.453212 | 2.4:-52630116 | MS.gene73343:intron |
GAAGGGGATATTAGGACAAA+TGG | 0.454861 | 2.4:-52627919 | MS.gene73343:CDS |
ACTTACACCTTCGGCTTACA+AGG | 0.455491 | 2.4:-52626061 | MS.gene73343:intron |
GCTTATACAACTTACACCTT+CGG | 0.456485 | 2.4:-52626070 | MS.gene73343:CDS |
ATGGATGTCTCCAAGACATC+TGG | 0.457629 | 2.4:-52626892 | MS.gene73343:CDS |
ACTGAGAGATTCCGAGATCA+AGG | 0.465252 | 2.4:-52626324 | MS.gene73343:CDS |
GATGGTGAGGTGTCCGGAGG+TGG | 0.465881 | 2.4:+52630020 | None:intergenic |
AATGCCTCCTTCTGTCTGGT+TGG | 0.467566 | 2.4:-52612555 | MS.gene73343:CDS |
CAGATTGTAAATCGGCTTGA+CGG | 0.467977 | 2.4:-52611560 | MS.gene73343:CDS |
AAGAATAAAAGACTCTGATC+AGG | 0.468708 | 2.4:-52612748 | MS.gene73343:intron |
AATTGCAAATGGAAAGGAAC+TGG | 0.469530 | 2.4:-52627364 | MS.gene73343:CDS |
TGCCTCCTTCTGTCTGGTTG+GGG | 0.473661 | 2.4:-52612553 | MS.gene73343:CDS |
AATTACGACTTCAATACAAA+AGG | 0.473979 | 2.4:-52632481 | MS.gene73343:CDS |
TATCTTTGTAAAGAGGCTCT+TGG | 0.475827 | 2.4:+52610986 | None:intergenic |
GCGACGGATGGTGAGGTGTC+CGG | 0.476384 | 2.4:+52630014 | None:intergenic |
TCTTCACAAAATAATTAAAA+CGG | 0.476793 | 2.4:+52613084 | None:intergenic |
CTCACCACTGTTGCTGTCTC+CGG | 0.479188 | 2.4:+52629990 | None:intergenic |
AGTGCTCCCTAAAATTCAAC+AGG | 0.479510 | 2.4:-52618503 | MS.gene73343:intron |
ATTTAGGTATACGACCGATC+AGG | 0.480846 | 2.4:-52612437 | MS.gene73343:intron |
GACAAAATGAATATGAATCA+TGG | 0.482887 | 2.4:+52632702 | None:intergenic |
AAAAGTACATTCCAGTCATC+CGG | 0.484735 | 2.4:+52624371 | None:intergenic |
TCGTTGATATCTTTGTAAAG+AGG | 0.485892 | 2.4:+52610979 | None:intergenic |
GAGGTGTCCGGAGGTGGAAA+CGG | 0.486615 | 2.4:+52630026 | None:intergenic |
TTCCAGTCATCCGGTTTGGA+TGG | 0.487891 | 2.4:+52624380 | None:intergenic |
CTTGTCGAGGCGTGAGAAAA+GGG | 0.491177 | 2.4:+52611514 | None:intergenic |
ATATTTCTCGTGCACGTGGT+TGG | 0.491798 | 2.4:-52612414 | MS.gene73343:CDS |
TCCGGTTTGGATGGATTCCA+AGG | 0.492740 | 2.4:+52624389 | None:intergenic |
ATGCGCATAACATCTGTTCT+GGG | 0.493418 | 2.4:+52621004 | None:intergenic |
TTTAATATCAACTCCTGTCC+CGG | 0.494122 | 2.4:-52626943 | MS.gene73343:CDS |
AGATTGTAAATCGGCTTGAC+GGG | 0.495236 | 2.4:-52611559 | MS.gene73343:CDS |
CCCTTGGAATCCATCCAAAC+CGG | 0.497647 | 2.4:-52624390 | MS.gene73343:CDS |
TTGCGTACCGTGTTGTAAAG+AGG | 0.498043 | 2.4:-52626092 | MS.gene73343:CDS |
TTCAAGTTAGACTCAAAAGT+AGG | 0.506596 | 2.4:+52629814 | None:intergenic |
AGTTTGAAAATGTAAACCCT+TGG | 0.507098 | 2.4:-52624406 | MS.gene73343:CDS |
GTGACTGGATTTAGATTCAA+AGG | 0.509183 | 2.4:+52632527 | None:intergenic |
GAATCCTGTAGGTTTATGTA+CGG | 0.509765 | 2.4:-52613142 | MS.gene73343:intron |
TCTCCTAGAATTAATGTTGT+GGG | 0.512111 | 2.4:-52628030 | MS.gene73343:CDS |
AGGAAAAGTTATATGAGCAT+TGG | 0.517864 | 2.4:-52626915 | MS.gene73343:CDS |
CAACTCCTGTCCCGGTCTGA+AGG | 0.524216 | 2.4:-52626935 | MS.gene73343:CDS |
TTTCTTAATAGCAGATTCGC+GGG | 0.526308 | 2.4:-52612146 | MS.gene73343:intron |
TTCTCCTAGAATTAATGTTG+TGG | 0.531071 | 2.4:-52628031 | MS.gene73343:CDS |
TAATCAAACCTTCTCCATCA+TGG | 0.531700 | 2.4:+52628615 | None:intergenic |
GCTGTCTCCGGTGCGACGGA+TGG | 0.532054 | 2.4:+52630002 | None:intergenic |
ATACAAATTCACTTGTTGCA+TGG | 0.539199 | 2.4:+52632773 | None:intergenic |
GGCAGCGTAGAGGGCGACGG+TGG | 0.540531 | 2.4:+52630047 | None:intergenic |
ATCCTTGCTGCTCCTTGAGT+AGG | 0.541330 | 2.4:+52632336 | None:intergenic |
CCGGTTTGGATGGATTCCAA+GGG | 0.541473 | 2.4:+52624390 | None:intergenic |
CCTCGAAGACACAAGCATCA+TGG | 0.545363 | 2.4:-52626521 | MS.gene73343:CDS |
GGTGGAAACGGCAGCGTAGA+GGG | 0.546065 | 2.4:+52630038 | None:intergenic |
CAATAATAAAGTCTGAGGTA+TGG | 0.546076 | 2.4:+52623976 | None:intergenic |
CACCTCACCATCCGTCGCAC+CGG | 0.553850 | 2.4:-52630009 | MS.gene73343:CDS |
CAGGATATTTCTCGTGCACG+TGG | 0.555120 | 2.4:-52612418 | MS.gene73343:CDS |
TGTTGCTGTCTCCGGTGCGA+CGG | 0.555199 | 2.4:+52629998 | None:intergenic |
AGAAAAGGGCAGTGCACTGA+GGG | 0.559508 | 2.4:+52611528 | None:intergenic |
AGAATGATTCCAAATTGGCT+AGG | 0.560951 | 2.4:-52626365 | MS.gene73343:CDS |
CAAATTGGCTAGGCTTGAAG+AGG | 0.562164 | 2.4:-52626355 | MS.gene73343:CDS |
GTCTCAAATTGCAAATGGAA+AGG | 0.563496 | 2.4:-52627370 | MS.gene73343:CDS |
GGTTCCAGGCAGCAGCTACC+GGG | 0.563934 | 2.4:-52626584 | MS.gene73343:intron |
TACACAATGAATTGGGGAGT+TGG | 0.564288 | 2.4:+52632734 | None:intergenic |
CTCCAAGACATCTGGAGGCA+AGG | 0.565999 | 2.4:-52626884 | MS.gene73343:CDS |
GACGAGTAAAACCTTGATCT+CGG | 0.566984 | 2.4:+52626313 | None:intergenic |
AAAGAAAGAAGGTAGAAGGG+TGG | 0.569826 | 2.4:-52628690 | MS.gene73343:CDS |
ATTTCTTAATAGCAGATTCG+CGG | 0.572777 | 2.4:-52612147 | MS.gene73343:intron |
GTATTCACTCCCAGAGAGGA+AGG | 0.573905 | 2.4:-52612106 | MS.gene73343:CDS |
AGGTGGAAACGGCAGCGTAG+AGG | 0.574085 | 2.4:+52630037 | None:intergenic |
TGCAGATGTAATGACAATGC+AGG | 0.574103 | 2.4:-52621178 | MS.gene73343:intron |
AAAGTTATATGAGCATTGGA+TGG | 0.574379 | 2.4:-52626911 | MS.gene73343:CDS |
AAGTTGATGTCTGAATATAA+AGG | 0.578086 | 2.4:-52618538 | MS.gene73343:CDS |
ATCAAGTAGCATAATACTGA+AGG | 0.580699 | 2.4:+52611463 | None:intergenic |
ACGTGGTTGGTTCTTTAAAG+GGG | 0.587777 | 2.4:-52612401 | MS.gene73343:CDS |
CGGTACGCAATACTTGCCAT+TGG | 0.593807 | 2.4:+52626105 | None:intergenic |
ACCAGTGTTCTAATTATGAA+GGG | 0.593849 | 2.4:-52618849 | MS.gene73343:CDS |
TATAAAGTCAATAGTAGATG+CGG | 0.593988 | 2.4:-52613114 | MS.gene73343:CDS |
AACGGCAGCGTAGAGGGCGA+CGG | 0.594680 | 2.4:+52630044 | None:intergenic |
GTGTTCTAATTATGAAGGGA+AGG | 0.598899 | 2.4:-52618845 | MS.gene73343:intron |
GAGGATGACCATGATGGAGA+AGG | 0.600520 | 2.4:-52628623 | MS.gene73343:intron |
GGCGCTAGAAGGCCTACTCA+AGG | 0.600977 | 2.4:-52632348 | MS.gene73343:CDS |
GGCTTTATATTAATCTAGAG+AGG | 0.604007 | 2.4:-52611424 | MS.gene73343:intron |
TCCCTTCATAATTAGAACAC+TGG | 0.604738 | 2.4:+52618848 | None:intergenic |
TGTTACAGTAAAGTATATCC+CGG | 0.607837 | 2.4:+52626566 | None:intergenic |
CTCCCCAACCAGACAGAAGG+AGG | 0.609264 | 2.4:+52612551 | None:intergenic |
AGCCACATCTGAGGATTCAG+TGG | 0.611898 | 2.4:-52627893 | MS.gene73343:CDS |
ATCCACTGAATCCTCAGATG+TGG | 0.611963 | 2.4:+52627891 | None:intergenic |
TTACTCCCCAACCAGACAGA+AGG | 0.612151 | 2.4:+52612548 | None:intergenic |
AAAGAACTTGAAATTCAGCT+GGG | 0.613411 | 2.4:-52627410 | MS.gene73343:CDS |
CTCCGGTGCGACGGATGGTG+AGG | 0.615002 | 2.4:+52630007 | None:intergenic |
GGCGAGGTAAACAGGAGGAA+CGG | 0.616383 | 2.4:+52632259 | None:intergenic |
CTGAAGGACATCAGAGAGTG+AGG | 0.616836 | 2.4:+52611479 | None:intergenic |
GCAGCGTAGAGGGCGACGGT+GGG | 0.617855 | 2.4:+52630048 | None:intergenic |
GTAAACAGGAGGAACGGCGC+TGG | 0.619648 | 2.4:+52632265 | None:intergenic |
TTGATGAAATGTGGTGCAAG+TGG | 0.622379 | 2.4:-52611445 | MS.gene73343:CDS |
TGAAGCAATAATAAAGTCTG+AGG | 0.623452 | 2.4:+52623971 | None:intergenic |
TAAACTACCTTGTAAGCCGA+AGG | 0.625672 | 2.4:+52626054 | None:intergenic |
GGGGATATTAGGACAAATGG+TGG | 0.626227 | 2.4:-52627916 | MS.gene73343:CDS |
AGAAGGTTCTGAGACTGAAG+AGG | 0.630248 | 2.4:-52627965 | MS.gene73343:CDS |
TGCACGAGAAATATCCTGAT+CGG | 0.633285 | 2.4:+52612423 | None:intergenic |
GATGTCTCCAAGACATCTGG+AGG | 0.637454 | 2.4:-52626889 | MS.gene73343:CDS |
GGAGTTGGAGAGACTTCTCG+TGG | 0.637871 | 2.4:+52632749 | None:intergenic |
AAATGGTGGAGCCACATCTG+AGG | 0.640560 | 2.4:-52627902 | MS.gene73343:CDS |
CTTACATTAACCAAACAAAG+TGG | 0.640775 | 2.4:+52623948 | None:intergenic |
CGCACCGGAGACAGCAACAG+TGG | 0.645846 | 2.4:-52629994 | MS.gene73343:intron |
AAATTGGCTAGGCTTGAAGA+GGG | 0.647700 | 2.4:-52626354 | MS.gene73343:CDS |
ACGGATGGTGAGGTGTCCGG+AGG | 0.650206 | 2.4:+52630017 | None:intergenic |
TGGGCTGCGTAGATGGTAAG+CGG | 0.650972 | 2.4:+52621023 | None:intergenic |
GGCCTACTCAAGGAGCAGCA+AGG | 0.653707 | 2.4:-52632338 | MS.gene73343:CDS |
TTATGCTACTTGATGAAATG+TGG | 0.660063 | 2.4:-52611454 | MS.gene73343:CDS |
GAGGAAGGAGCTTTACCCTG+AGG | 0.660381 | 2.4:-52612091 | MS.gene73343:intron |
AAATATTCAAGACGACGGCG+AGG | 0.661478 | 2.4:+52632243 | None:intergenic |
ATGTTATGCGCATTAGACCA+TGG | 0.670625 | 2.4:-52620994 | MS.gene73343:intron |
TAAATCTGTGAACTTGCTGG+AGG | 0.672934 | 2.4:-52628642 | MS.gene73343:CDS |
TTGCTGGAGGATGACCATGA+TGG | 0.673286 | 2.4:-52628629 | MS.gene73343:CDS |
TGCACACAACCGGAAATCTG+CGG | 0.686670 | 2.4:+52612338 | None:intergenic |
GCATTACCCGATACTTGTCG+AGG | 0.689787 | 2.4:+52611501 | None:intergenic |
TGAAGAGACTGAAATCAACA+AGG | 0.690678 | 2.4:-52621381 | MS.gene73343:CDS |
CGACAAAATATTCAAGACGA+CGG | 0.692018 | 2.4:+52632238 | None:intergenic |
GTTGCATGGAGAGATATGGA+AGG | 0.692612 | 2.4:+52632787 | None:intergenic |
GAGAAAAGGGCAGTGCACTG+AGG | 0.697911 | 2.4:+52611527 | None:intergenic |
TTCTTAATAGCAGATTCGCG+GGG | 0.701145 | 2.4:-52612145 | MS.gene73343:intron |
TCATGTATTCACTCCCAGAG+AGG | 0.707123 | 2.4:-52612110 | MS.gene73343:CDS |
GAAGCTATATCACTGTCGCA+CGG | 0.716257 | 2.4:-52630078 | MS.gene73343:CDS |
GTATAAGCCTCTTTACAACA+CGG | 0.716756 | 2.4:+52626085 | None:intergenic |
ACGACGGCGAGGTAAACAGG+AGG | 0.729568 | 2.4:+52632254 | None:intergenic |
CATGTGTACACAATGAATTG+GGG | 0.762778 | 2.4:+52632728 | None:intergenic |
ACATACTTAACGGCACAGAG+CGG | 0.783182 | 2.4:-52630106 | MS.gene73343:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 52610948 | 52632815 | 52610948 | ID=MS.gene73343 |
chr2.4 | mRNA | 52610948 | 52632815 | 52610948 | ID=MS.gene73343.t1;Parent=MS.gene73343 |
chr2.4 | exon | 52632692 | 52632815 | 52632692 | ID=MS.gene73343.t1.exon1;Parent=MS.gene73343.t1 |
chr2.4 | CDS | 52632692 | 52632815 | 52632692 | ID=cds.MS.gene73343.t1;Parent=MS.gene73343.t1 |
chr2.4 | exon | 52632454 | 52632551 | 52632454 | ID=MS.gene73343.t1.exon2;Parent=MS.gene73343.t1 |
chr2.4 | CDS | 52632454 | 52632551 | 52632454 | ID=cds.MS.gene73343.t1;Parent=MS.gene73343.t1 |
chr2.4 | exon | 52632233 | 52632370 | 52632233 | ID=MS.gene73343.t1.exon3;Parent=MS.gene73343.t1 |
chr2.4 | CDS | 52632233 | 52632370 | 52632233 | ID=cds.MS.gene73343.t1;Parent=MS.gene73343.t1 |
chr2.4 | exon | 52629995 | 52630129 | 52629995 | ID=MS.gene73343.t1.exon4;Parent=MS.gene73343.t1 |
chr2.4 | CDS | 52629995 | 52630129 | 52629995 | ID=cds.MS.gene73343.t1;Parent=MS.gene73343.t1 |
chr2.4 | exon | 52629811 | 52629887 | 52629811 | ID=MS.gene73343.t1.exon5;Parent=MS.gene73343.t1 |
chr2.4 | CDS | 52629811 | 52629887 | 52629811 | ID=cds.MS.gene73343.t1;Parent=MS.gene73343.t1 |
chr2.4 | exon | 52628624 | 52628742 | 52628624 | ID=MS.gene73343.t1.exon6;Parent=MS.gene73343.t1 |
chr2.4 | CDS | 52628624 | 52628742 | 52628624 | ID=cds.MS.gene73343.t1;Parent=MS.gene73343.t1 |
chr2.4 | exon | 52627886 | 52628066 | 52627886 | ID=MS.gene73343.t1.exon7;Parent=MS.gene73343.t1 |
chr2.4 | CDS | 52627886 | 52628066 | 52627886 | ID=cds.MS.gene73343.t1;Parent=MS.gene73343.t1 |
chr2.4 | exon | 52627348 | 52627486 | 52627348 | ID=MS.gene73343.t1.exon8;Parent=MS.gene73343.t1 |
chr2.4 | CDS | 52627348 | 52627486 | 52627348 | ID=cds.MS.gene73343.t1;Parent=MS.gene73343.t1 |
chr2.4 | exon | 52626845 | 52626968 | 52626845 | ID=MS.gene73343.t1.exon9;Parent=MS.gene73343.t1 |
chr2.4 | CDS | 52626845 | 52626968 | 52626845 | ID=cds.MS.gene73343.t1;Parent=MS.gene73343.t1 |
chr2.4 | exon | 52626501 | 52626598 | 52626501 | ID=MS.gene73343.t1.exon10;Parent=MS.gene73343.t1 |
chr2.4 | CDS | 52626501 | 52626598 | 52626501 | ID=cds.MS.gene73343.t1;Parent=MS.gene73343.t1 |
chr2.4 | exon | 52626308 | 52626424 | 52626308 | ID=MS.gene73343.t1.exon11;Parent=MS.gene73343.t1 |
chr2.4 | CDS | 52626308 | 52626424 | 52626308 | ID=cds.MS.gene73343.t1;Parent=MS.gene73343.t1 |
chr2.4 | exon | 52626062 | 52626142 | 52626062 | ID=MS.gene73343.t1.exon12;Parent=MS.gene73343.t1 |
chr2.4 | CDS | 52626062 | 52626142 | 52626062 | ID=cds.MS.gene73343.t1;Parent=MS.gene73343.t1 |
chr2.4 | exon | 52624323 | 52624462 | 52624323 | ID=MS.gene73343.t1.exon13;Parent=MS.gene73343.t1 |
chr2.4 | CDS | 52624323 | 52624462 | 52624323 | ID=cds.MS.gene73343.t1;Parent=MS.gene73343.t1 |
chr2.4 | exon | 52623953 | 52624025 | 52623953 | ID=MS.gene73343.t1.exon14;Parent=MS.gene73343.t1 |
chr2.4 | CDS | 52623953 | 52624025 | 52623953 | ID=cds.MS.gene73343.t1;Parent=MS.gene73343.t1 |
chr2.4 | exon | 52621349 | 52621408 | 52621349 | ID=MS.gene73343.t1.exon15;Parent=MS.gene73343.t1 |
chr2.4 | CDS | 52621349 | 52621408 | 52621349 | ID=cds.MS.gene73343.t1;Parent=MS.gene73343.t1 |
chr2.4 | exon | 52621179 | 52621217 | 52621179 | ID=MS.gene73343.t1.exon16;Parent=MS.gene73343.t1 |
chr2.4 | CDS | 52621179 | 52621217 | 52621179 | ID=cds.MS.gene73343.t1;Parent=MS.gene73343.t1 |
chr2.4 | exon | 52620995 | 52621083 | 52620995 | ID=MS.gene73343.t1.exon17;Parent=MS.gene73343.t1 |
chr2.4 | CDS | 52620995 | 52621083 | 52620995 | ID=cds.MS.gene73343.t1;Parent=MS.gene73343.t1 |
chr2.4 | exon | 52619759 | 52619823 | 52619759 | ID=MS.gene73343.t1.exon18;Parent=MS.gene73343.t1 |
chr2.4 | CDS | 52619759 | 52619823 | 52619759 | ID=cds.MS.gene73343.t1;Parent=MS.gene73343.t1 |
chr2.4 | exon | 52618846 | 52618892 | 52618846 | ID=MS.gene73343.t1.exon19;Parent=MS.gene73343.t1 |
chr2.4 | CDS | 52618846 | 52618892 | 52618846 | ID=cds.MS.gene73343.t1;Parent=MS.gene73343.t1 |
chr2.4 | exon | 52618504 | 52618563 | 52618504 | ID=MS.gene73343.t1.exon20;Parent=MS.gene73343.t1 |
chr2.4 | CDS | 52618504 | 52618563 | 52618504 | ID=cds.MS.gene73343.t1;Parent=MS.gene73343.t1 |
chr2.4 | exon | 52613082 | 52613153 | 52613082 | ID=MS.gene73343.t1.exon21;Parent=MS.gene73343.t1 |
chr2.4 | CDS | 52613082 | 52613153 | 52613082 | ID=cds.MS.gene73343.t1;Parent=MS.gene73343.t1 |
chr2.4 | exon | 52612749 | 52612778 | 52612749 | ID=MS.gene73343.t1.exon22;Parent=MS.gene73343.t1 |
chr2.4 | CDS | 52612749 | 52612778 | 52612749 | ID=cds.MS.gene73343.t1;Parent=MS.gene73343.t1 |
chr2.4 | exon | 52612552 | 52612646 | 52612552 | ID=MS.gene73343.t1.exon23;Parent=MS.gene73343.t1 |
chr2.4 | CDS | 52612552 | 52612646 | 52612552 | ID=cds.MS.gene73343.t1;Parent=MS.gene73343.t1 |
chr2.4 | exon | 52612348 | 52612453 | 52612348 | ID=MS.gene73343.t1.exon24;Parent=MS.gene73343.t1 |
chr2.4 | CDS | 52612348 | 52612453 | 52612348 | ID=cds.MS.gene73343.t1;Parent=MS.gene73343.t1 |
chr2.4 | exon | 52612092 | 52612154 | 52612092 | ID=MS.gene73343.t1.exon25;Parent=MS.gene73343.t1 |
chr2.4 | CDS | 52612092 | 52612154 | 52612092 | ID=cds.MS.gene73343.t1;Parent=MS.gene73343.t1 |
chr2.4 | exon | 52611425 | 52611579 | 52611425 | ID=MS.gene73343.t1.exon26;Parent=MS.gene73343.t1 |
chr2.4 | CDS | 52611425 | 52611579 | 52611425 | ID=cds.MS.gene73343.t1;Parent=MS.gene73343.t1 |
chr2.4 | exon | 52610948 | 52611065 | 52610948 | ID=MS.gene73343.t1.exon27;Parent=MS.gene73343.t1 |
chr2.4 | CDS | 52610948 | 52611065 | 52610948 | ID=cds.MS.gene73343.t1;Parent=MS.gene73343.t1 |
Gene Sequence |
Protein sequence |