Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73414.t1 | XP_013470156.1 | 99 | 203 | 2 | 0 | 1 | 203 | 1 | 203 | 5.20E-109 | 403.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73414.t1 | A2RVT6 | 46.1 | 193 | 102 | 1 | 13 | 203 | 20 | 212 | 7.7e-45 | 181.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73414.t1 | A0A072VQ94 | 99.0 | 203 | 2 | 0 | 1 | 203 | 1 | 203 | 3.7e-109 | 403.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049239 | MS.gene73414 | 0.83729 | 5.67E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73414.t1 | MTR_1g109630 | 98.544 | 206 | 2 | 1 | 1 | 205 | 1 | 206 | 1.83e-149 | 413 |
| MS.gene73414.t1 | MTR_8g099060 | 38.614 | 202 | 118 | 2 | 10 | 205 | 58 | 259 | 4.02e-49 | 160 |
| MS.gene73414.t1 | MTR_1g099500 | 40.415 | 193 | 109 | 2 | 10 | 196 | 51 | 243 | 2.78e-44 | 148 |
| MS.gene73414.t1 | MTR_8g028450 | 38.235 | 204 | 116 | 3 | 10 | 203 | 62 | 265 | 3.34e-44 | 148 |
| MS.gene73414.t1 | MTR_3g449880 | 35.484 | 186 | 114 | 2 | 10 | 189 | 43 | 228 | 3.47e-36 | 127 |
| MS.gene73414.t1 | MTR_5g090340 | 35.678 | 199 | 116 | 4 | 10 | 198 | 87 | 283 | 5.59e-35 | 125 |
| MS.gene73414.t1 | MTR_5g090340 | 35.678 | 199 | 116 | 4 | 10 | 198 | 90 | 286 | 6.93e-35 | 125 |
| MS.gene73414.t1 | MTR_3g449880 | 32.544 | 169 | 110 | 1 | 25 | 189 | 38 | 206 | 2.97e-28 | 105 |
| MS.gene73414.t1 | MTR_3g062910 | 34.132 | 167 | 106 | 1 | 14 | 176 | 53 | 219 | 8.40e-27 | 102 |
| MS.gene73414.t1 | MTR_4g014700 | 29.231 | 195 | 134 | 1 | 13 | 203 | 12 | 206 | 6.57e-21 | 86.7 |
| MS.gene73414.t1 | MTR_1g107445 | 28.351 | 194 | 135 | 1 | 14 | 203 | 8 | 201 | 1.33e-18 | 80.5 |
| MS.gene73414.t1 | MTR_6g012460 | 28.804 | 184 | 127 | 1 | 24 | 203 | 13 | 196 | 3.35e-18 | 79.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73414.t1 | AT3G18260 | 45.128 | 195 | 103 | 1 | 13 | 203 | 28 | 222 | 1.67e-58 | 184 |
| MS.gene73414.t1 | AT1G68230 | 46.073 | 191 | 101 | 1 | 15 | 203 | 22 | 212 | 4.47e-57 | 179 |
| MS.gene73414.t1 | AT4G11220 | 38.614 | 202 | 118 | 2 | 10 | 205 | 69 | 270 | 1.52e-51 | 167 |
| MS.gene73414.t1 | AT4G23630 | 38.614 | 202 | 118 | 2 | 10 | 205 | 73 | 274 | 4.80e-51 | 166 |
| MS.gene73414.t1 | AT4G23630 | 38.614 | 202 | 118 | 2 | 10 | 205 | 73 | 274 | 4.80e-51 | 166 |
| MS.gene73414.t1 | AT2G46170 | 38.119 | 202 | 119 | 2 | 10 | 205 | 52 | 253 | 1.10e-47 | 157 |
| MS.gene73414.t1 | AT5G41600 | 38.235 | 204 | 116 | 3 | 10 | 203 | 52 | 255 | 2.20e-45 | 151 |
| MS.gene73414.t1 | AT3G61560 | 36.500 | 200 | 121 | 2 | 10 | 203 | 52 | 251 | 3.51e-42 | 143 |
| MS.gene73414.t1 | AT3G61560 | 36.500 | 200 | 121 | 2 | 10 | 203 | 52 | 251 | 3.51e-42 | 143 |
| MS.gene73414.t1 | AT1G64090 | 35.678 | 199 | 118 | 3 | 10 | 198 | 48 | 246 | 6.26e-42 | 142 |
| MS.gene73414.t1 | AT1G64090 | 32.870 | 216 | 119 | 4 | 10 | 199 | 48 | 263 | 5.38e-38 | 132 |
| MS.gene73414.t1 | AT1G68230 | 46.715 | 137 | 71 | 1 | 15 | 149 | 22 | 158 | 2.08e-35 | 122 |
| MS.gene73414.t1 | AT3G10260 | 31.980 | 197 | 130 | 1 | 13 | 205 | 50 | 246 | 2.13e-35 | 125 |
| MS.gene73414.t1 | AT3G10260 | 31.980 | 197 | 130 | 1 | 13 | 205 | 50 | 246 | 2.13e-35 | 125 |
| MS.gene73414.t1 | AT3G10260 | 31.980 | 197 | 130 | 1 | 13 | 205 | 70 | 266 | 4.04e-35 | 125 |
| MS.gene73414.t1 | AT4G01230 | 35.784 | 204 | 120 | 4 | 2 | 197 | 44 | 244 | 4.66e-35 | 124 |
| MS.gene73414.t1 | AT4G01230 | 34.804 | 204 | 120 | 5 | 2 | 197 | 44 | 242 | 6.05e-32 | 116 |
| MS.gene73414.t1 | AT3G61560 | 37.671 | 146 | 85 | 2 | 10 | 149 | 52 | 197 | 4.68e-28 | 105 |
| MS.gene73414.t1 | AT2G46170 | 37.795 | 127 | 73 | 2 | 10 | 130 | 52 | 178 | 4.09e-24 | 94.4 |
| MS.gene73414.t1 | AT3G10915 | 25.854 | 205 | 146 | 2 | 5 | 203 | 20 | 224 | 2.16e-23 | 93.6 |
| MS.gene73414.t1 | AT3G10915 | 26.000 | 200 | 142 | 2 | 10 | 203 | 50 | 249 | 2.70e-23 | 94.0 |
| MS.gene73414.t1 | AT3G19460 | 28.492 | 179 | 116 | 4 | 16 | 186 | 14 | 188 | 1.10e-22 | 91.3 |
| MS.gene73414.t1 | AT3G19460 | 28.492 | 179 | 116 | 4 | 16 | 186 | 14 | 188 | 1.10e-22 | 91.3 |
| MS.gene73414.t1 | AT3G19460 | 28.492 | 179 | 116 | 4 | 16 | 186 | 14 | 188 | 1.10e-22 | 91.3 |
| MS.gene73414.t1 | AT3G10915 | 25.728 | 206 | 146 | 3 | 5 | 203 | 20 | 225 | 6.88e-22 | 89.7 |
| MS.gene73414.t1 | AT2G15280 | 24.479 | 192 | 141 | 1 | 15 | 202 | 5 | 196 | 4.87e-20 | 84.3 |
| MS.gene73414.t1 | AT3G10915 | 24.044 | 183 | 135 | 1 | 25 | 203 | 9 | 191 | 3.17e-18 | 79.3 |
| MS.gene73414.t1 | AT3G10915 | 24.044 | 183 | 135 | 1 | 25 | 203 | 10 | 192 | 3.79e-18 | 79.0 |
| MS.gene73414.t1 | AT3G10915 | 23.246 | 228 | 146 | 4 | 5 | 203 | 20 | 247 | 6.63e-17 | 76.6 |
| MS.gene73414.t1 | AT3G19460 | 25.472 | 212 | 114 | 5 | 16 | 186 | 14 | 222 | 7.25e-17 | 76.3 |
| MS.gene73414.t1 | AT3G19460 | 25.472 | 212 | 114 | 5 | 16 | 186 | 14 | 222 | 7.25e-17 | 76.3 |
| MS.gene73414.t1 | AT3G54120 | 29.545 | 176 | 115 | 3 | 3 | 172 | 1 | 173 | 9.55e-17 | 75.5 |
| MS.gene73414.t1 | AT2G01240 | 28.889 | 135 | 94 | 2 | 69 | 202 | 1 | 134 | 2.73e-14 | 67.4 |
| MS.gene73414.t1 | AT3G19460 | 24.510 | 204 | 110 | 5 | 24 | 186 | 6 | 206 | 3.46e-13 | 66.2 |
| MS.gene73414.t1 | AT3G19460 | 24.510 | 204 | 110 | 5 | 24 | 186 | 6 | 206 | 3.46e-13 | 66.2 |
Find 43 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATGCTCATTCTCTTTATT+TGG | 0.147832 | 1.4:-83928784 | MS.gene73414:CDS |
| TCCAATCAACCTGGTTTATT+TGG | 0.194638 | 1.4:-83929813 | MS.gene73414:CDS |
| GAAGAGATTGTTCAACAAAT+TGG | 0.245195 | 1.4:-83927922 | MS.gene73414:CDS |
| TCATACCGCTCATACATAAT+TGG | 0.314636 | 1.4:+83927987 | None:intergenic |
| CTATGGATCATGTCTACTAT+TGG | 0.332384 | 1.4:-83928154 | MS.gene73414:CDS |
| ACCAAATAAACCAGGTTGAT+TGG | 0.341184 | 1.4:+83929812 | None:intergenic |
| ATGAATCTAACGGTAGAATC+TGG | 0.349110 | 1.4:+83928596 | None:intergenic |
| TTCAGACAATAGCTGGTCTA+TGG | 0.360102 | 1.4:-83928171 | MS.gene73414:intron |
| TGGATTCTACAGTTCTCAAT+AGG | 0.367654 | 1.4:-83927902 | MS.gene73414:CDS |
| ATTTCAAAATCATAGATATC+AGG | 0.404128 | 1.4:+83928620 | None:intergenic |
| TTTATTTGGTATAATGCAGC+TGG | 0.406398 | 1.4:-83928770 | MS.gene73414:CDS |
| TGAACAATCTCTTCACGTCT+TGG | 0.421418 | 1.4:+83927931 | None:intergenic |
| AAATAAAGAGAATGAGCATA+AGG | 0.427457 | 1.4:+83928786 | None:intergenic |
| ATTGAATTTCAGACAATAGC+TGG | 0.451267 | 1.4:-83928178 | MS.gene73414:intron |
| AATAAAGAGAATGAGCATAA+GGG | 0.486688 | 1.4:+83928787 | None:intergenic |
| AGACCACTTCACGCAGTCCT+TGG | 0.495322 | 1.4:-83929789 | MS.gene73414:CDS |
| CCAGGTTGATTGGAACGGAT+TGG | 0.508121 | 1.4:+83929822 | None:intergenic |
| CCACTTCACGCAGTCCTTGG+TGG | 0.509588 | 1.4:-83929786 | MS.gene73414:CDS |
| GAAAACAACGGCAGCAATTG+TGG | 0.515778 | 1.4:-83928888 | MS.gene73414:CDS |
| ATGCAGCTGGATTAATCACT+TGG | 0.517496 | 1.4:-83928757 | MS.gene73414:intron |
| AAAAGTTCAACTTGTTCTTG+AGG | 0.520276 | 1.4:-83928568 | MS.gene73414:CDS |
| CAGTTCTCAATAGGATTCCA+AGG | 0.520634 | 1.4:-83927893 | MS.gene73414:CDS |
| TGAATCTAACGGTAGAATCT+GGG | 0.523175 | 1.4:+83928597 | None:intergenic |
| AGATCTTAGATTCTTCTTTG+TGG | 0.523221 | 1.4:-83928519 | MS.gene73414:intron |
| ACAACGGCAGCAATTGTGGC+TGG | 0.528525 | 1.4:-83928884 | MS.gene73414:CDS |
| CCAATCCGTTCCAATCAACC+TGG | 0.539807 | 1.4:-83929822 | MS.gene73414:CDS |
| ACATAATTGGAAGTGTCACC+AGG | 0.546032 | 1.4:+83928000 | None:intergenic |
| GTGGACTATCTAGCAAGTAA+AGG | 0.551485 | 1.4:-83927957 | MS.gene73414:CDS |
| GAATGAGCATAAGGGCTATG+AGG | 0.566119 | 1.4:+83928795 | None:intergenic |
| GCATAAGGGCTATGAGGATG+TGG | 0.569062 | 1.4:+83928801 | None:intergenic |
| CCACCAAGGACTGCGTGAAG+TGG | 0.572676 | 1.4:+83929786 | None:intergenic |
| ATAAACCAGGTTGATTGGAA+CGG | 0.576581 | 1.4:+83929817 | None:intergenic |
| CAGTTGCTGATATCTTGCTA+TGG | 0.577932 | 1.4:-83928919 | MS.gene73414:CDS |
| GGTTTGGTTTCTCTTTGAAG+TGG | 0.581573 | 1.4:-83928852 | MS.gene73414:CDS |
| AGTTCTCAATAGGATTCCAA+GGG | 0.601630 | 1.4:-83927892 | MS.gene73414:CDS |
| CACTTCCAATTATGTATGAG+CGG | 0.613668 | 1.4:-83927992 | MS.gene73414:CDS |
| CTTCACGCAGTCCTTGGTGG+AGG | 0.617691 | 1.4:-83929783 | MS.gene73414:CDS |
| GTATGAGCGGTATGAACATG+AGG | 0.680175 | 1.4:-83927979 | MS.gene73414:CDS |
| TCTTACTCTTTCCTCCACCA+AGG | 0.691240 | 1.4:+83929772 | None:intergenic |
| AGTGGTCTACCAAATAAACC+AGG | 0.692119 | 1.4:+83929804 | None:intergenic |
| ATGGAAAGACATGAAAACAA+CGG | 0.698215 | 1.4:-83928900 | MS.gene73414:CDS |
| TGAGCGGTATGAACATGAGG+TGG | 0.701805 | 1.4:-83927976 | MS.gene73414:CDS |
| GTTCTCAATAGGATTCCAAG+GGG | 0.759037 | 1.4:-83927891 | MS.gene73414:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTGATAAAAACTTAT+AGG | - | chr1.4:83929403-83929422 | MS.gene73414:intron | 10.0% |
| !! | ATATAGTCAAAAAAATTTAT+AGG | + | chr1.4:83929319-83929338 | None:intergenic | 10.0% |
| !! | ATATTTAGAAATTAGATTAA+GGG | + | chr1.4:83928069-83928088 | None:intergenic | 10.0% |
| !! | TACTAAAAATGAAAATTAAT+AGG | + | chr1.4:83928346-83928365 | None:intergenic | 10.0% |
| !! | TATAGTCAAAAAAATTTATA+GGG | + | chr1.4:83929318-83929337 | None:intergenic | 10.0% |
| !! | TATATTTAGAAATTAGATTA+AGG | + | chr1.4:83928070-83928089 | None:intergenic | 10.0% |
| !!! | ACATATTCATAATTTTTATA+AGG | + | chr1.4:83928975-83928994 | None:intergenic | 10.0% |
| !!! | TTTGATAGTAAATATTTAAT+AGG | - | chr1.4:83928007-83928026 | MS.gene73414:CDS | 10.0% |
| !! | AAATAAGATAGCATAAATTA+TGG | - | chr1.4:83929431-83929450 | MS.gene73414:intron | 15.0% |
| !! | AATAAGATAGCATAAATTAT+GGG | - | chr1.4:83929432-83929451 | MS.gene73414:intron | 15.0% |
| !! | ATAGTAAATATTTAATAGGT+TGG | - | chr1.4:83928011-83928030 | MS.gene73414:CDS | 15.0% |
| !!! | AAAAAATAATTTTTTGTCGA+GGG | + | chr1.4:83928202-83928221 | None:intergenic | 15.0% |
| !!! | AATAACTTTTTGAAAATAAG+AGG | + | chr1.4:83928296-83928315 | None:intergenic | 15.0% |
| !!! | ATAACTTTTTGAAAATAAGA+GGG | + | chr1.4:83928295-83928314 | None:intergenic | 15.0% |
| !!! | GTTCATACAAAATTTTATTT+TGG | - | chr1.4:83928615-83928634 | MS.gene73414:CDS | 15.0% |
| !!! | TAAAAAATAATTTTTTGTCG+AGG | + | chr1.4:83928203-83928222 | None:intergenic | 15.0% |
| !!! | TATATTTTATTTAGTACATG+TGG | + | chr1.4:83928722-83928741 | None:intergenic | 15.0% |
| !!! | TTTTAAAACGTTTATTTCAT+TGG | - | chr1.4:83928444-83928463 | MS.gene73414:intron | 15.0% |
| !!! | TTTTATCAAAAAAATGTAAG+CGG | - | chr1.4:83928091-83928110 | MS.gene73414:intron | 15.0% |
| !! | AACAAATCAATTCAAATCAA+AGG | + | chr1.4:83929477-83929496 | None:intergenic | 20.0% |
| !! | AATTCAGAAAGAAAAGAAAA+TGG | + | chr1.4:83929245-83929264 | None:intergenic | 20.0% |
| !! | ATAAGATAGCATAAATTATG+GGG | - | chr1.4:83929433-83929452 | MS.gene73414:intron | 20.0% |
| !! | ATTTCAAAATCATAGATATC+AGG | + | chr1.4:83929074-83929093 | None:intergenic | 20.0% |
| !! | CTAAAACAAGATTAAATGTA+TGG | + | chr1.4:83928271-83928290 | None:intergenic | 20.0% |
| !! | TTTATCAAAAAAATGTAAGC+GGG | - | chr1.4:83928092-83928111 | MS.gene73414:intron | 20.0% |
| !!! | AAATTTTATGACATTTCAAC+TGG | - | chr1.4:83929146-83929165 | MS.gene73414:intron | 20.0% |
| !!! | AATTTTATGACATTTCAACT+GGG | - | chr1.4:83929147-83929166 | MS.gene73414:intron | 20.0% |
| !!! | ATTTTACTTTTATATATGGG+TGG | - | chr1.4:83928124-83928143 | MS.gene73414:CDS | 20.0% |
| !!! | CTTTTTATGAATGAATCTAA+CGG | + | chr1.4:83929108-83929127 | None:intergenic | 20.0% |
| !!! | GCATCTTTTATAAAAATAGA+GGG | - | chr1.4:83929346-83929365 | MS.gene73414:intron | 20.0% |
| !!! | TAACTTTTTGAAAATAAGAG+GGG | + | chr1.4:83928294-83928313 | None:intergenic | 20.0% |
| !!! | TACAAAATTTTATTTTGGCT+TGG | - | chr1.4:83928620-83928639 | MS.gene73414:CDS | 20.0% |
| ! | AAAAATAAGGCTTCTGAATA+GGG | + | chr1.4:83929003-83929022 | None:intergenic | 25.0% |
| ! | AAATAAAGAGAATGAGCATA+AGG | + | chr1.4:83928908-83928927 | None:intergenic | 25.0% |
| ! | AAATGTACCTGTGTTTAAAA+AGG | - | chr1.4:83929372-83929391 | MS.gene73414:intron | 25.0% |
| ! | AATAAAGAGAATGAGCATAA+GGG | + | chr1.4:83928907-83928926 | None:intergenic | 25.0% |
| ! | AGTCAAAAAAATTTATAGGG+AGG | + | chr1.4:83929315-83929334 | None:intergenic | 25.0% |
| ! | CACCAAATGTTACAAAAATA+AGG | + | chr1.4:83929016-83929035 | None:intergenic | 25.0% |
| ! | GAGGTGATAATAATTGAAAA+TGG | + | chr1.4:83929212-83929231 | None:intergenic | 25.0% |
| ! | TCATTGGTAGAAATAGAAAT+AGG | - | chr1.4:83928460-83928479 | MS.gene73414:intron | 25.0% |
| ! | TTATGCTCATTCTCTTTATT+TGG | - | chr1.4:83928907-83928926 | MS.gene73414:CDS | 25.0% |
| ! | TTTAGAAATTAGATTAAGGG+AGG | + | chr1.4:83928066-83928085 | None:intergenic | 25.0% |
| !! | CGCATCTTTTATAAAAATAG+AGG | - | chr1.4:83929345-83929364 | MS.gene73414:intron | 25.0% |
| !! | GTAAATATTTAATAGGTTGG+TGG | - | chr1.4:83928014-83928033 | MS.gene73414:intron | 25.0% |
| !!! | AGCCTTATTTTTGTAACATT+TGG | - | chr1.4:83929011-83929030 | MS.gene73414:intron | 25.0% |
| !!! | ATTTTCATTTTTAGTAGTCG+TGG | - | chr1.4:83928350-83928369 | MS.gene73414:intron | 25.0% |
| AGATCTTAGATTCTTCTTTG+TGG | - | chr1.4:83929172-83929191 | MS.gene73414:intron | 30.0% | |
| ATGAACTAACCCACATAAAT+TGG | + | chr1.4:83928601-83928620 | None:intergenic | 30.0% | |
| ATGGAAAGACATGAAAACAA+CGG | - | chr1.4:83928791-83928810 | MS.gene73414:CDS | 30.0% | |
| ATTAAGAAGAGTTCACTCTA+AGG | + | chr1.4:83928553-83928572 | None:intergenic | 30.0% | |
| ATTGAATTTCAGACAATAGC+TGG | - | chr1.4:83929513-83929532 | MS.gene73414:intron | 30.0% | |
| CAAAAATAAGGCTTCTGAAT+AGG | + | chr1.4:83929004-83929023 | None:intergenic | 30.0% | |
| CTTCTTAAATAAAGACGAGA+CGG | - | chr1.4:83928486-83928505 | MS.gene73414:intron | 30.0% | |
| GAAGAGATTGTTCAACAAAT+TGG | - | chr1.4:83929769-83929788 | MS.gene73414:intron | 30.0% | |
| TCAGAACAATCATATCACTA+AGG | + | chr1.4:83928747-83928766 | None:intergenic | 30.0% | |
| TTATTTATGTGTTGCATTGC+AGG | - | chr1.4:83929042-83929061 | MS.gene73414:intron | 30.0% | |
| TTTATTTGGTATAATGCAGC+TGG | - | chr1.4:83928921-83928940 | MS.gene73414:intron | 30.0% | |
| ! | AAAAGTTCAACTTGTTCTTG+AGG | - | chr1.4:83929123-83929142 | MS.gene73414:intron | 30.0% |
| ! | TACTTTTATATATGGGTGGT+TGG | - | chr1.4:83928128-83928147 | MS.gene73414:CDS | 30.0% |
| !!! | GTGGCTTTTTTTCTAAAACT+TGG | + | chr1.4:83928703-83928722 | None:intergenic | 30.0% |
| AGAAAAGAAAATGGTCTCAG+TGG | + | chr1.4:83929236-83929255 | None:intergenic | 35.0% | |
| AGGCAAATATCTTTCCACTA+GGG | + | chr1.4:83928326-83928345 | None:intergenic | 35.0% | |
| AGTTCTCAATAGGATTCCAA+GGG | - | chr1.4:83929799-83929818 | MS.gene73414:CDS | 35.0% | |
| ATGAATCTAACGGTAGAATC+TGG | + | chr1.4:83929098-83929117 | None:intergenic | 35.0% | |
| CAAGAATACACAACATAGCA+TGG | + | chr1.4:83929656-83929675 | None:intergenic | 35.0% | |
| CACTTCCAATTATGTATGAG+CGG | - | chr1.4:83929699-83929718 | MS.gene73414:intron | 35.0% | |
| CTATGGATCATGTCTACTAT+TGG | - | chr1.4:83929537-83929556 | MS.gene73414:intron | 35.0% | |
| CTCTTGGTACCAATTTATGT+GGG | - | chr1.4:83928589-83928608 | MS.gene73414:CDS | 35.0% | |
| GCATGAAAACGTGATACAAA+AGG | + | chr1.4:83927962-83927981 | None:intergenic | 35.0% | |
| GTACCTGTGTTTAAAAAGGT+AGG | - | chr1.4:83929376-83929395 | MS.gene73414:intron | 35.0% | |
| GTCTCAAGTTTGAATTCTCT+TGG | - | chr1.4:83928573-83928592 | MS.gene73414:CDS | 35.0% | |
| TAGGCAAATATCTTTCCACT+AGG | + | chr1.4:83928327-83928346 | None:intergenic | 35.0% | |
| TCATACCGCTCATACATAAT+TGG | + | chr1.4:83929707-83929726 | None:intergenic | 35.0% | |
| TCCAATCAACCTGGTTTATT+TGG | - | chr1.4:83927878-83927897 | MS.gene73414:CDS | 35.0% | |
| TCTCTTGGTACCAATTTATG+TGG | - | chr1.4:83928588-83928607 | MS.gene73414:CDS | 35.0% | |
| TGAATCTAACGGTAGAATCT+GGG | + | chr1.4:83929097-83929116 | None:intergenic | 35.0% | |
| TGGATTCTACAGTTCTCAAT+AGG | - | chr1.4:83929789-83929808 | MS.gene73414:CDS | 35.0% | |
| ! | AATTGTGGCTGGATTTTCAA+TGG | - | chr1.4:83928818-83928837 | MS.gene73414:CDS | 35.0% |
| ! | GTTCCTACCTTTTTAAACAC+AGG | + | chr1.4:83929382-83929401 | None:intergenic | 35.0% |
| !! | ACCAAATAAACCAGGTTGAT+TGG | + | chr1.4:83927882-83927901 | None:intergenic | 35.0% |
| !! | ATAAACCAGGTTGATTGGAA+CGG | + | chr1.4:83927877-83927896 | None:intergenic | 35.0% |
| AAATATCTTTCCACTAGGGC+TGG | + | chr1.4:83928322-83928341 | None:intergenic | 40.0% | |
| AGTGGTCTACCAAATAAACC+AGG | + | chr1.4:83927890-83927909 | None:intergenic | 40.0% | |
| ATGCAGCTGGATTAATCACT+TGG | - | chr1.4:83928934-83928953 | MS.gene73414:intron | 40.0% | |
| CAGTTCTCAATAGGATTCCA+AGG | - | chr1.4:83929798-83929817 | MS.gene73414:CDS | 40.0% | |
| CAGTTGCTGATATCTTGCTA+TGG | - | chr1.4:83928772-83928791 | MS.gene73414:CDS | 40.0% | |
| CATCATTGTATCAACCCATG+TGG | + | chr1.4:83928516-83928535 | None:intergenic | 40.0% | |
| GTTCTCAATAGGATTCCAAG+GGG | - | chr1.4:83929800-83929819 | MS.gene73414:CDS | 40.0% | |
| TGAACAATCTCTTCACGTCT+TGG | + | chr1.4:83929763-83929782 | None:intergenic | 40.0% | |
| ! | AGGGAGGTACATATTGTATC+AGG | + | chr1.4:83928050-83928069 | None:intergenic | 40.0% |
| ! | CATCGGTACTTTTCTTTCAC+AGG | + | chr1.4:83929827-83929846 | None:intergenic | 40.0% |
| ! | GGTTTGGTTTCTCTTTGAAG+TGG | - | chr1.4:83928839-83928858 | MS.gene73414:CDS | 40.0% |
| ! | GTGGACTATCTAGCAAGTAA+AGG | - | chr1.4:83929734-83929753 | MS.gene73414:intron | 40.0% |
| ! | TACCTCGGTTTAGTCAGTTT+TGG | - | chr1.4:83928668-83928687 | MS.gene73414:intron | 40.0% |
| ! | TGGCTGGATTTTCAATGGTT+TGG | - | chr1.4:83928823-83928842 | MS.gene73414:CDS | 40.0% |
| ! | TTCAGACAATAGCTGGTCTA+TGG | - | chr1.4:83929520-83929539 | MS.gene73414:intron | 40.0% |
| ! | TTGTACAGCATTTTTGTGCC+TGG | - | chr1.4:83929673-83929692 | MS.gene73414:intron | 40.0% |
| !! | ACATAATTGGAAGTGTCACC+AGG | + | chr1.4:83929694-83929713 | None:intergenic | 40.0% |
| !! | ATTTAAAGCGAGGGTTTTGG+TGG | + | chr1.4:83928179-83928198 | None:intergenic | 40.0% |
| !!! | GGTTTAGTCAGTTTTGGAGT+CGG | - | chr1.4:83928674-83928693 | MS.gene73414:intron | 40.0% |
| AGAAAATGGTCTCAGTGGAG+AGG | + | chr1.4:83929231-83929250 | None:intergenic | 45.0% | |
| AGTTATTAGACCAGCCCTAG+TGG | - | chr1.4:83928309-83928328 | MS.gene73414:intron | 45.0% | |
| CAATCCATTGTCAGCTTGCA+GGG | + | chr1.4:83928647-83928666 | None:intergenic | 45.0% | |
| CTCCAAAACTGACTAAACCG+AGG | + | chr1.4:83928673-83928692 | None:intergenic | 45.0% | |
| GAAAACAACGGCAGCAATTG+TGG | - | chr1.4:83928803-83928822 | MS.gene73414:CDS | 45.0% | |
| GAATGAGCATAAGGGCTATG+AGG | + | chr1.4:83928899-83928918 | None:intergenic | 45.0% | |
| GTATGAGCGGTATGAACATG+AGG | - | chr1.4:83929712-83929731 | MS.gene73414:intron | 45.0% | |
| TATATGGGTGGTTGGAAAGC+AGG | - | chr1.4:83928136-83928155 | MS.gene73414:CDS | 45.0% | |
| TCTTACTCTTTCCTCCACCA+AGG | + | chr1.4:83927922-83927941 | None:intergenic | 45.0% | |
| ! | TGTCGAGGGATTTAAAGCGA+GGG | + | chr1.4:83928188-83928207 | None:intergenic | 45.0% |
| ! | TTGTCGAGGGATTTAAAGCG+AGG | + | chr1.4:83928189-83928208 | None:intergenic | 45.0% |
| ! | TTTTAGTAGTCGTGGACTCG+TGG | - | chr1.4:83928358-83928377 | MS.gene73414:intron | 45.0% |
| ! | TTTTCTTTCACAGGTCCCCT+TGG | + | chr1.4:83929818-83929837 | None:intergenic | 45.0% |
| !! | CTGACAATGGATTGGTACCT+CGG | - | chr1.4:83928653-83928672 | MS.gene73414:intron | 45.0% |
| !! | GGGATTTAAAGCGAGGGTTT+TGG | + | chr1.4:83928182-83928201 | None:intergenic | 45.0% |
| !! | CATATTAATAATTAATAATA+AGG | + | chr1.4:83929633-83929652 | None:intergenic | 5.0% |
| !!! | AAAATTTTACTTTTATATAT+GGG | - | chr1.4:83928121-83928140 | MS.gene73414:CDS | 5.0% |
| !!! | AATAATAAAATTAATTTGTT+TGG | + | chr1.4:83929606-83929625 | None:intergenic | 5.0% |
| !!! | ACAAATTAATTTTATTATTT+AGG | - | chr1.4:83929607-83929626 | MS.gene73414:intron | 5.0% |
| !!! | TAAAATTTTACTTTTATATA+TGG | - | chr1.4:83928120-83928139 | MS.gene73414:CDS | 5.0% |
| AGACGAGACGGAAATCCACA+TGG | - | chr1.4:83928498-83928517 | MS.gene73414:intron | 50.0% | |
| CCAATCCATTGTCAGCTTGC+AGG | + | chr1.4:83928648-83928667 | None:intergenic | 50.0% | |
| CCAATCCGTTCCAATCAACC+TGG | - | chr1.4:83927869-83927888 | MS.gene73414:CDS | 50.0% | |
| CCTGCAAGCTGACAATGGAT+TGG | - | chr1.4:83928645-83928664 | MS.gene73414:intron | 50.0% | |
| GACGAGACGGAAATCCACAT+GGG | - | chr1.4:83928499-83928518 | MS.gene73414:intron | 50.0% | |
| GCATAAGGGCTATGAGGATG+TGG | + | chr1.4:83928893-83928912 | None:intergenic | 50.0% | |
| TGAGCGGTATGAACATGAGG+TGG | - | chr1.4:83929715-83929734 | MS.gene73414:intron | 50.0% | |
| TGGAAAGCAGGTCGGTCTAA+GGG | - | chr1.4:83928148-83928167 | MS.gene73414:CDS | 50.0% | |
| TTGGAAAGCAGGTCGGTCTA+AGG | - | chr1.4:83928147-83928166 | MS.gene73414:CDS | 50.0% | |
| !! | CCAGGTTGATTGGAACGGAT+TGG | + | chr1.4:83927872-83927891 | None:intergenic | 50.0% |
| ACAACGGCAGCAATTGTGGC+TGG | - | chr1.4:83928807-83928826 | MS.gene73414:CDS | 55.0% | |
| AGACCACTTCACGCAGTCCT+TGG | - | chr1.4:83927902-83927921 | MS.gene73414:CDS | 55.0% | |
| AGCAGGTCGGTCTAAGGGTA+AGG | - | chr1.4:83928153-83928172 | MS.gene73414:CDS | 55.0% | |
| TGGACCCTGCAAGCTGACAA+TGG | - | chr1.4:83928640-83928659 | MS.gene73414:intron | 55.0% | |
| TGGGTGGTTGGAAAGCAGGT+CGG | - | chr1.4:83928140-83928159 | MS.gene73414:CDS | 55.0% | |
| CCACCAAGGACTGCGTGAAG+TGG | + | chr1.4:83927908-83927927 | None:intergenic | 60.0% | |
| CCACTTCACGCAGTCCTTGG+TGG | - | chr1.4:83927905-83927924 | MS.gene73414:CDS | 60.0% | |
| CTTCACGCAGTCCTTGGTGG+AGG | - | chr1.4:83927908-83927927 | MS.gene73414:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 83927866 | 83929847 | 83927866 | ID=MS.gene73414 |
| chr1.4 | mRNA | 83927866 | 83929847 | 83927866 | ID=MS.gene73414.t1;Parent=MS.gene73414 |
| chr1.4 | exon | 83929778 | 83929847 | 83929778 | ID=MS.gene73414.t1.exon1;Parent=MS.gene73414.t1 |
| chr1.4 | CDS | 83929778 | 83929847 | 83929778 | ID=cds.MS.gene73414.t1;Parent=MS.gene73414.t1 |
| chr1.4 | exon | 83928758 | 83928938 | 83928758 | ID=MS.gene73414.t1.exon2;Parent=MS.gene73414.t1 |
| chr1.4 | CDS | 83928758 | 83928938 | 83928758 | ID=cds.MS.gene73414.t1;Parent=MS.gene73414.t1 |
| chr1.4 | exon | 83928520 | 83928649 | 83928520 | ID=MS.gene73414.t1.exon3;Parent=MS.gene73414.t1 |
| chr1.4 | CDS | 83928520 | 83928649 | 83928520 | ID=cds.MS.gene73414.t1;Parent=MS.gene73414.t1 |
| chr1.4 | exon | 83928119 | 83928188 | 83928119 | ID=MS.gene73414.t1.exon4;Parent=MS.gene73414.t1 |
| chr1.4 | CDS | 83928119 | 83928188 | 83928119 | ID=cds.MS.gene73414.t1;Parent=MS.gene73414.t1 |
| chr1.4 | exon | 83927866 | 83928032 | 83927866 | ID=MS.gene73414.t1.exon5;Parent=MS.gene73414.t1 |
| chr1.4 | CDS | 83927866 | 83928032 | 83927866 | ID=cds.MS.gene73414.t1;Parent=MS.gene73414.t1 |
| Gene Sequence |
| Protein sequence |
