Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73750.t1 | XP_003624375.3 | 98.3 | 424 | 7 | 0 | 1 | 424 | 1 | 424 | 1.90E-238 | 834.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73750.t1 | Q8H0Z4 | 61.6 | 417 | 116 | 7 | 1 | 415 | 3 | 377 | 4.2e-138 | 492.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73750.t1 | G7KV66 | 98.3 | 424 | 7 | 0 | 1 | 424 | 1 | 424 | 1.4e-238 | 834.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051946 | MS.gene73750 | 0.820341 | 7.22E-53 | -1.69E-46 |
| MS.gene057014 | MS.gene73750 | 0.826609 | 2.47E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73750.t1 | MTR_7g082570 | 98.349 | 424 | 7 | 0 | 1 | 424 | 1 | 424 | 0.0 | 867 |
| MS.gene73750.t1 | MTR_6g004280 | 75.410 | 427 | 81 | 7 | 2 | 423 | 3 | 410 | 0.0 | 649 |
| MS.gene73750.t1 | MTR_1g110060 | 69.952 | 416 | 121 | 3 | 3 | 415 | 4 | 418 | 0.0 | 618 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73750.t1 | AT5G38200 | 75.118 | 422 | 101 | 3 | 3 | 421 | 11 | 431 | 0.0 | 657 |
| MS.gene73750.t1 | AT1G66860 | 72.300 | 426 | 114 | 3 | 2 | 424 | 6 | 430 | 0.0 | 642 |
| MS.gene73750.t1 | AT5G38200 | 78.198 | 344 | 71 | 3 | 3 | 343 | 11 | 353 | 0.0 | 551 |
| MS.gene73750.t1 | AT5G38200 | 75.630 | 357 | 83 | 3 | 3 | 356 | 11 | 366 | 0.0 | 550 |
| MS.gene73750.t1 | AT1G15040 | 61.631 | 417 | 116 | 7 | 1 | 415 | 3 | 377 | 0.0 | 518 |
| MS.gene73750.t1 | AT1G15040 | 67.500 | 320 | 86 | 5 | 1 | 318 | 3 | 306 | 7.91e-156 | 444 |
Find 90 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTTTGCATCATTGGTTTA+AGG | 0.188726 | 7.3:+25309195 | MS.gene73750:CDS |
| AGAGGGGAAAATGGATATTT+TGG | 0.200161 | 7.3:+25309228 | MS.gene73750:CDS |
| GTCATAGTTCCACGTGTTTC+CGG | 0.202387 | 7.3:+25308776 | MS.gene73750:CDS |
| AGAAGAGGGTAAGTTTATTA+TGG | 0.212954 | 7.3:+25309363 | MS.gene73750:CDS |
| ACAGATTTGTTCTGAAGTTT+TGG | 0.231256 | 7.3:+25310682 | MS.gene73750:CDS |
| TTCTTGAAGTTCAGATTCTT+TGG | 0.232601 | 7.3:-25310125 | None:intergenic |
| GGGATGCCCCTTTGCTTATC+AGG | 0.245075 | 7.3:+25309444 | MS.gene73750:CDS |
| TTCTTTGGAAGAGGGGAAAA+TGG | 0.263628 | 7.3:+25309219 | MS.gene73750:CDS |
| AAAATACACCTTTGCATCAT+TGG | 0.304807 | 7.3:+25309188 | MS.gene73750:CDS |
| ATAATAAACTTACCCTCTTC+TGG | 0.314503 | 7.3:-25309361 | None:intergenic |
| AAAGCCTCTAAAACTTAATA+AGG | 0.318860 | 7.3:+25310018 | MS.gene73750:CDS |
| TCATAGTTCCACGTGTTTCC+GGG | 0.320130 | 7.3:+25308777 | MS.gene73750:CDS |
| TTCTGATGAATTTGATTATC+CGG | 0.321498 | 7.3:+25309423 | MS.gene73750:CDS |
| TCATTGGTTTAAGGATTCTT+TGG | 0.326878 | 7.3:+25309204 | MS.gene73750:CDS |
| GAAGAGGGTAAGTTTATTAT+GGG | 0.330211 | 7.3:+25309364 | MS.gene73750:CDS |
| CTTGTCTTTCTATCACACTA+TGG | 0.360794 | 7.3:+25310658 | MS.gene73750:CDS |
| TGAAAGAAACATTCCTTACT+TGG | 0.361983 | 7.3:+25309003 | MS.gene73750:CDS |
| TCTTCTGGATTATAAGCATC+AGG | 0.386183 | 7.3:-25309346 | None:intergenic |
| CTCCTGATGGTTTGATTGAA+GGG | 0.397165 | 7.3:+25309314 | MS.gene73750:CDS |
| GCTCCTGATGGTTTGATTGA+AGG | 0.402159 | 7.3:+25309313 | MS.gene73750:CDS |
| TCTAAAACTTAATAAGGAAA+TGG | 0.405237 | 7.3:+25310024 | MS.gene73750:CDS |
| GACCTCTACAATCATGGCCT+TGG | 0.440274 | 7.3:+25310091 | MS.gene73750:CDS |
| TTGAAGTTCAGATTCTTTGG+TGG | 0.459311 | 7.3:-25310122 | None:intergenic |
| GTTTCTTTCAAGACAAAGCT+TGG | 0.474454 | 7.3:-25308990 | None:intergenic |
| AACCCTTCAATCAAACCATC+AGG | 0.478520 | 7.3:-25309316 | None:intergenic |
| GTTAATAGTTATCATCATCA+AGG | 0.482477 | 7.3:+25309250 | MS.gene73750:CDS |
| CGAATTACCTGATAAGCAAA+GGG | 0.482699 | 7.3:-25309451 | None:intergenic |
| CCTCTACAAATTCCCAAGTA+AGG | 0.489708 | 7.3:-25309016 | None:intergenic |
| GTTTAAGGATTCTTTGGAAG+AGG | 0.491298 | 7.3:+25309210 | MS.gene73750:CDS |
| TTTAAGGATTCTTTGGAAGA+GGG | 0.492185 | 7.3:+25309211 | MS.gene73750:CDS |
| ATAAGGAAATGGAAAACAAA+AGG | 0.493176 | 7.3:+25310035 | MS.gene73750:CDS |
| CATAGAAGCACACCATGGAT+TGG | 0.515588 | 7.3:-25308827 | None:intergenic |
| AACGAACTTGTTCTTGCGAA+GGG | 0.515604 | 7.3:-25308479 | None:intergenic |
| GAAAGAAACATTCCTTACTT+GGG | 0.524058 | 7.3:+25309004 | MS.gene73750:CDS |
| AAAGAATCTGAACTTCAAGA+AGG | 0.524252 | 7.3:+25310127 | MS.gene73750:CDS |
| GGTGCCACAGTTAGAAATGC+AGG | 0.528138 | 7.3:+25310542 | MS.gene73750:CDS |
| TCTGATGAATTTGATTATCC+GGG | 0.530989 | 7.3:+25309424 | MS.gene73750:CDS |
| TTAAGGATTCTTTGGAAGAG+GGG | 0.531169 | 7.3:+25309212 | MS.gene73750:CDS |
| ATTAACTATGATGATTATGA+TGG | 0.531284 | 7.3:+25309139 | MS.gene73750:CDS |
| CAACGAACTTGTTCTTGCGA+AGG | 0.532178 | 7.3:-25308480 | None:intergenic |
| AAGAATCTGAACTTCAAGAA+GGG | 0.532959 | 7.3:+25310128 | MS.gene73750:CDS |
| TTGTCTTTCTATCACACTAT+GGG | 0.536270 | 7.3:+25310659 | MS.gene73750:CDS |
| GCAAAAGACCTCTACAATCA+TGG | 0.537541 | 7.3:+25310085 | MS.gene73750:CDS |
| ACAATGGCTTCCGACCTATC+CGG | 0.540181 | 7.3:+25308421 | None:intergenic |
| CCTTACTTGGGAATTTGTAG+AGG | 0.541458 | 7.3:+25309016 | MS.gene73750:CDS |
| TCGAATTACCTGATAAGCAA+AGG | 0.541505 | 7.3:-25309452 | None:intergenic |
| CCATCAGGAGCAAAAGCCAT+TGG | 0.542834 | 7.3:-25309301 | None:intergenic |
| AGTCGGCTATGGCGCGGTAC+CGG | 0.544931 | 7.3:+25308754 | MS.gene73750:CDS |
| CTTGATCTTATAGTCGGCTA+TGG | 0.548943 | 7.3:+25308743 | MS.gene73750:CDS |
| AGGAAAAGAGCTTTCAAACA+AGG | 0.550293 | 7.3:+25309087 | MS.gene73750:CDS |
| CTTACTTGGGAATTTGTAGA+GGG | 0.563096 | 7.3:+25309017 | MS.gene73750:CDS |
| CACATCATGTCTTTCTCAAG+AGG | 0.563983 | 7.3:+25308889 | MS.gene73750:CDS |
| AAAACTGCAGGAATTTGTAA+AGG | 0.565853 | 7.3:+25309955 | MS.gene73750:intron |
| TGATAAGCAAAGGGGCATCC+CGG | 0.567231 | 7.3:-25309442 | None:intergenic |
| TCCTTAAACCAATGATGCAA+AGG | 0.567486 | 7.3:-25309196 | None:intergenic |
| AGGGAGAATGCCGGATAGGT+CGG | 0.568641 | 7.3:-25308431 | None:intergenic |
| CATAGCCGACTATAAGATCA+AGG | 0.569028 | 7.3:-25308742 | None:intergenic |
| CAGTTGTTGCTTATCAGAAG+AGG | 0.574778 | 7.3:+25309978 | MS.gene73750:CDS |
| GAGAAGACATTGATCCATCA+TGG | 0.578667 | 7.3:+25308855 | MS.gene73750:CDS |
| GGTACTTTATATCAAGACAT+AGG | 0.581651 | 7.3:+25309067 | MS.gene73750:CDS |
| GATAGCTTTGAACCAATCCA+TGG | 0.584098 | 7.3:+25308815 | MS.gene73750:CDS |
| CACGAGGGAGAATGCCGGAT+AGG | 0.585129 | 7.3:-25308435 | None:intergenic |
| GAAACACGTGGAACTATGAC+CGG | 0.585277 | 7.3:-25308773 | None:intergenic |
| TAGAACACGAGGGAGAATGC+CGG | 0.587130 | 7.3:-25308440 | None:intergenic |
| TATCACCTTGATCTTATAGT+CGG | 0.588888 | 7.3:+25308737 | MS.gene73750:CDS |
| CAAAGCTATCTAACAACATG+TGG | 0.591695 | 7.3:-25308802 | None:intergenic |
| GTGTCTTCTTCGTACCATGA+TGG | 0.595392 | 7.3:-25308869 | None:intergenic |
| TGATGCTTATAATCCAGAAG+AGG | 0.598955 | 7.3:+25309348 | MS.gene73750:CDS |
| CATAGTTCCACGTGTTTCCG+GGG | 0.599219 | 7.3:+25308778 | MS.gene73750:CDS |
| AGAGAGACTGAAGCAGAATG+AGG | 0.600552 | 7.3:+25310574 | MS.gene73750:CDS |
| GGAAAAGAGCTTTCAAACAA+GGG | 0.608474 | 7.3:+25309088 | MS.gene73750:CDS |
| GATGCTTATAATCCAGAAGA+GGG | 0.613931 | 7.3:+25309349 | MS.gene73750:CDS |
| ATCTAACAACATGTGGACCC+CGG | 0.615605 | 7.3:-25308795 | None:intergenic |
| AGAATCTGAACTTCAAGAAG+GGG | 0.620915 | 7.3:+25310129 | MS.gene73750:CDS |
| CTAGAAACTATTAGAACACG+AGG | 0.624352 | 7.3:-25308451 | None:intergenic |
| CTTTGGTGGAGTTCATACCA+AGG | 0.629408 | 7.3:-25310108 | None:intergenic |
| CTTCTAAATGTGGCATGTGG+AGG | 0.629521 | 7.3:+25309046 | MS.gene73750:CDS |
| ATGTGGACCCCGGAAACACG+TGG | 0.632453 | 7.3:-25308785 | None:intergenic |
| CAACTTCTAAATGTGGCATG+TGG | 0.641956 | 7.3:+25309043 | MS.gene73750:CDS |
| AGAAGGGGCAGAGTTTCTAG+AGG | 0.642561 | 7.3:+25310144 | MS.gene73750:CDS |
| CTTCTGGATTATAAGCATCA+GGG | 0.643591 | 7.3:-25309345 | None:intergenic |
| TACCAAGGCCATGATTGTAG+AGG | 0.646791 | 7.3:-25310093 | None:intergenic |
| AGGGTCACAACTTCTAAATG+TGG | 0.648276 | 7.3:+25309036 | MS.gene73750:CDS |
| TCTTATAGTCGGCTATGGCG+CGG | 0.674953 | 7.3:+25308748 | MS.gene73750:CDS |
| CATGGTGTGCTTCTATGTGA+AGG | 0.682068 | 7.3:+25308833 | MS.gene73750:CDS |
| TGATCCTGCATTTCTAACTG+TGG | 0.685111 | 7.3:-25310546 | None:intergenic |
| TTATGATGGTCATAGACATG+AGG | 0.696322 | 7.3:+25309153 | MS.gene73750:CDS |
| GAATTACCTGATAAGCAAAG+GGG | 0.697423 | 7.3:-25309450 | None:intergenic |
| CTTCACATAGAAGCACACCA+TGG | 0.698034 | 7.3:-25308832 | None:intergenic |
| TAGAAACTATTAGAACACGA+GGG | 0.757631 | 7.3:-25308450 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATGTGAAATATAATATA+TGG | - | chr7.3:25310433-25310452 | None:intergenic | 10.0% |
| !!! | ATAAATTTTCAATACATTAA+AGG | - | chr7.3:25310457-25310476 | None:intergenic | 10.0% |
| !!! | ATAGTACTATTTTCATTTAT+TGG | + | chr7.3:25309792-25309811 | MS.gene73750:intron | 15.0% |
| !!! | ATTACATGATTATTGTTTTT+AGG | + | chr7.3:25308710-25308729 | MS.gene73750:intron | 15.0% |
| !! | ACTAGTCAATAATAATGTAT+TGG | - | chr7.3:25309906-25309925 | None:intergenic | 20.0% |
| !! | ATAGTGAAAAAAATCAATTG+AGG | - | chr7.3:25309774-25309793 | None:intergenic | 20.0% |
| !! | ATCATTCAATATGAATTCTA+AGG | + | chr7.3:25308554-25308573 | MS.gene73750:intron | 20.0% |
| !! | ATGTGAAATATAATATATGG+AGG | - | chr7.3:25310430-25310449 | None:intergenic | 20.0% |
| !! | ATTAACTATGATGATTATGA+TGG | + | chr7.3:25309139-25309158 | MS.gene73750:CDS | 20.0% |
| !!! | AATATATGGAGGTATAAAAT+CGG | - | chr7.3:25310419-25310438 | None:intergenic | 20.0% |
| !!! | ATGTTTTGATCTTATTTTCT+TGG | + | chr7.3:25309687-25309706 | MS.gene73750:intron | 20.0% |
| !!! | ATTTCCTTATTAAGTTTTAG+AGG | - | chr7.3:25310025-25310044 | None:intergenic | 20.0% |
| !!! | GTTTATGTTATTTTTTTCGT+AGG | + | chr7.3:25310193-25310212 | MS.gene73750:intron | 20.0% |
| !!! | TCTAAAACTTAATAAGGAAA+TGG | + | chr7.3:25310024-25310043 | MS.gene73750:CDS | 20.0% |
| !!! | TTTTGACTTAATTACACTTT+TGG | + | chr7.3:25310345-25310364 | MS.gene73750:intron | 20.0% |
| !!! | TTTTGCAAATTTTCATGATT+TGG | - | chr7.3:25309645-25309664 | None:intergenic | 20.0% |
| ! | AGAAAAAAGGTTAAAGCAAA+TGG | + | chr7.3:25310520-25310539 | MS.gene73750:CDS | 25.0% |
| ! | ATAAGGAAATGGAAAACAAA+AGG | + | chr7.3:25310035-25310054 | MS.gene73750:CDS | 25.0% |
| ! | ATTCATCTCATAGAAACAAT+AGG | - | chr7.3:25308607-25308626 | None:intergenic | 25.0% |
| ! | GAAAAAAGGTTAAAGCAAAT+GGG | + | chr7.3:25310521-25310540 | MS.gene73750:CDS | 25.0% |
| ! | GTTAATAGTTATCATCATCA+AGG | + | chr7.3:25309250-25309269 | MS.gene73750:CDS | 25.0% |
| ! | TAACAAGATCGATAAAAAAG+AGG | - | chr7.3:25308684-25308703 | None:intergenic | 25.0% |
| ! | TCTTCATCTATTTGATTATG+TGG | + | chr7.3:25308626-25308645 | MS.gene73750:intron | 25.0% |
| ! | TTCTGATGAATTTGATTATC+CGG | + | chr7.3:25309423-25309442 | MS.gene73750:CDS | 25.0% |
| !! | CTAAATTGATAGTTTATTCC+CGG | - | chr7.3:25309480-25309499 | None:intergenic | 25.0% |
| !!! | AAAGCCTCTAAAACTTAATA+AGG | + | chr7.3:25310018-25310037 | MS.gene73750:CDS | 25.0% |
| AAAACTGCAGGAATTTGTAA+AGG | + | chr7.3:25309955-25309974 | MS.gene73750:intron | 30.0% | |
| AAAATACACCTTTGCATCAT+TGG | + | chr7.3:25309188-25309207 | MS.gene73750:CDS | 30.0% | |
| AAAGAATCTGAACTTCAAGA+AGG | + | chr7.3:25310127-25310146 | MS.gene73750:CDS | 30.0% | |
| AAGAATCTGAACTTCAAGAA+GGG | + | chr7.3:25310128-25310147 | MS.gene73750:CDS | 30.0% | |
| ACAAATGACAATGACACATT+CGG | - | chr7.3:25310252-25310271 | None:intergenic | 30.0% | |
| AGAAGAGGGTAAGTTTATTA+TGG | + | chr7.3:25309363-25309382 | MS.gene73750:CDS | 30.0% | |
| ATAATAAACTTACCCTCTTC+TGG | - | chr7.3:25309364-25309383 | None:intergenic | 30.0% | |
| ATACTAGACACACATTCTAT+CGG | - | chr7.3:25310229-25310248 | None:intergenic | 30.0% | |
| ATTTATTGGAGAGACAATGT+AGG | + | chr7.3:25309806-25309825 | MS.gene73750:intron | 30.0% | |
| CAAAATTCATGAAAAACTGC+AGG | + | chr7.3:25309943-25309962 | MS.gene73750:intron | 30.0% | |
| GAAAGAAACATTCCTTACTT+GGG | + | chr7.3:25309004-25309023 | MS.gene73750:CDS | 30.0% | |
| GAAGAGGGTAAGTTTATTAT+GGG | + | chr7.3:25309364-25309383 | MS.gene73750:CDS | 30.0% | |
| GAATGAGGAAAGAGAAAAAA+TGG | + | chr7.3:25310589-25310608 | MS.gene73750:CDS | 30.0% | |
| GGTACTTTATATCAAGACAT+AGG | + | chr7.3:25309067-25309086 | MS.gene73750:CDS | 30.0% | |
| TAGAAACTATTAGAACACGA+GGG | - | chr7.3:25308453-25308472 | None:intergenic | 30.0% | |
| TATCACCTTGATCTTATAGT+CGG | + | chr7.3:25308737-25308756 | MS.gene73750:CDS | 30.0% | |
| TCTGATGAATTTGATTATCC+GGG | + | chr7.3:25309424-25309443 | MS.gene73750:CDS | 30.0% | |
| TGAAAGAAACATTCCTTACT+TGG | + | chr7.3:25309003-25309022 | MS.gene73750:CDS | 30.0% | |
| TTCTTGAAGTTCAGATTCTT+TGG | - | chr7.3:25310128-25310147 | None:intergenic | 30.0% | |
| TTGTCTTTCTATCACACTAT+GGG | + | chr7.3:25310659-25310678 | MS.gene73750:CDS | 30.0% | |
| ! | TTTAAGGATTCTTTGGAAGA+GGG | + | chr7.3:25309211-25309230 | MS.gene73750:CDS | 30.0% |
| !! | TCATTGGTTTAAGGATTCTT+TGG | + | chr7.3:25309204-25309223 | MS.gene73750:CDS | 30.0% |
| !!! | AACAAGTTCGTTGATTTTGT+TGG | + | chr7.3:25308490-25308509 | MS.gene73750:CDS | 30.0% |
| !!! | ACAGATTTGTTCTGAAGTTT+TGG | + | chr7.3:25310682-25310701 | MS.gene73750:CDS | 30.0% |
| !!! | TGTTATTTTTTTCGTAGGAC+AGG | + | chr7.3:25310198-25310217 | MS.gene73750:intron | 30.0% |
| AATCGGTCGGAAAAATCTAA+AGG | - | chr7.3:25310402-25310421 | None:intergenic | 35.0% | |
| AGAATCTGAACTTCAAGAAG+GGG | + | chr7.3:25310129-25310148 | MS.gene73750:CDS | 35.0% | |
| AGGAAAAGAGCTTTCAAACA+AGG | + | chr7.3:25309087-25309106 | MS.gene73750:CDS | 35.0% | |
| ATCGGTCGGAAAAATCTAAA+GGG | - | chr7.3:25310401-25310420 | None:intergenic | 35.0% | |
| CAAAGCTATCTAACAACATG+TGG | - | chr7.3:25308805-25308824 | None:intergenic | 35.0% | |
| CGAATTACCTGATAAGCAAA+GGG | - | chr7.3:25309454-25309473 | None:intergenic | 35.0% | |
| CTAGAAACTATTAGAACACG+AGG | - | chr7.3:25308454-25308473 | None:intergenic | 35.0% | |
| CTTACTTGGGAATTTGTAGA+GGG | + | chr7.3:25309017-25309036 | MS.gene73750:CDS | 35.0% | |
| CTTATCAGGTAATTCGAAAC+CGG | + | chr7.3:25309458-25309477 | MS.gene73750:intron | 35.0% | |
| CTTCTGGATTATAAGCATCA+GGG | - | chr7.3:25309348-25309367 | None:intergenic | 35.0% | |
| CTTGTCTTTCTATCACACTA+TGG | + | chr7.3:25310658-25310677 | MS.gene73750:CDS | 35.0% | |
| GAATTACCTGATAAGCAAAG+GGG | - | chr7.3:25309453-25309472 | None:intergenic | 35.0% | |
| GATGCTTATAATCCAGAAGA+GGG | + | chr7.3:25309349-25309368 | MS.gene73750:CDS | 35.0% | |
| GGAAAAGAGCTTTCAAACAA+GGG | + | chr7.3:25309088-25309107 | MS.gene73750:CDS | 35.0% | |
| GTTTCTTTCAAGACAAAGCT+TGG | - | chr7.3:25308993-25309012 | None:intergenic | 35.0% | |
| TCCTTAAACCAATGATGCAA+AGG | - | chr7.3:25309199-25309218 | None:intergenic | 35.0% | |
| TCGAATTACCTGATAAGCAA+AGG | - | chr7.3:25309455-25309474 | None:intergenic | 35.0% | |
| TCGTTTCTTTATAGTCCTAC+TGG | + | chr7.3:25309585-25309604 | MS.gene73750:intron | 35.0% | |
| TCTTCTGGATTATAAGCATC+AGG | - | chr7.3:25309349-25309368 | None:intergenic | 35.0% | |
| TGATGCTTATAATCCAGAAG+AGG | + | chr7.3:25309348-25309367 | MS.gene73750:CDS | 35.0% | |
| TGGAACCATAGTCAAAGAAA+CGG | + | chr7.3:25309605-25309624 | MS.gene73750:intron | 35.0% | |
| TGTGATGGCAAAAATGTCAA+TGG | + | chr7.3:25310619-25310638 | MS.gene73750:CDS | 35.0% | |
| TTATCAGGTAATTCGAAACC+GGG | + | chr7.3:25309459-25309478 | MS.gene73750:intron | 35.0% | |
| TTATGATGGTCATAGACATG+AGG | + | chr7.3:25309153-25309172 | MS.gene73750:CDS | 35.0% | |
| TTGAAGTTCAGATTCTTTGG+TGG | - | chr7.3:25310125-25310144 | None:intergenic | 35.0% | |
| ! | AAAAATGGCAAGAAGTGTGA+TGG | + | chr7.3:25310604-25310623 | MS.gene73750:CDS | 35.0% |
| ! | AGAGGGGAAAATGGATATTT+TGG | + | chr7.3:25309228-25309247 | MS.gene73750:CDS | 35.0% |
| ! | GTTTAAGGATTCTTTGGAAG+AGG | + | chr7.3:25309210-25309229 | MS.gene73750:CDS | 35.0% |
| ! | TATGGAGGTATAAAATCGGT+CGG | - | chr7.3:25310415-25310434 | None:intergenic | 35.0% |
| ! | TTAAGGATTCTTTGGAAGAG+GGG | + | chr7.3:25309212-25309231 | MS.gene73750:CDS | 35.0% |
| !! | ACCTTTGCATCATTGGTTTA+AGG | + | chr7.3:25309195-25309214 | MS.gene73750:CDS | 35.0% |
| AACCCTTCAATCAAACCATC+AGG | - | chr7.3:25309319-25309338 | None:intergenic | 40.0% | |
| AGGGTCACAACTTCTAAATG+TGG | + | chr7.3:25309036-25309055 | MS.gene73750:CDS | 40.0% | |
| CAACTTCTAAATGTGGCATG+TGG | + | chr7.3:25309043-25309062 | MS.gene73750:CDS | 40.0% | |
| CACATCATGTCTTTCTCAAG+AGG | + | chr7.3:25308889-25308908 | MS.gene73750:CDS | 40.0% | |
| CATAGCCGACTATAAGATCA+AGG | - | chr7.3:25308745-25308764 | None:intergenic | 40.0% | |
| CCTCTACAAATTCCCAAGTA+AGG | - | chr7.3:25309019-25309038 | None:intergenic | 40.0% | |
| CCTTACTTGGGAATTTGTAG+AGG | + | chr7.3:25309016-25309035 | MS.gene73750:CDS | 40.0% | |
| CTCCTGATGGTTTGATTGAA+GGG | + | chr7.3:25309314-25309333 | MS.gene73750:CDS | 40.0% | |
| CTTGATCTTATAGTCGGCTA+TGG | + | chr7.3:25308743-25308762 | MS.gene73750:CDS | 40.0% | |
| GAGAAGACATTGATCCATCA+TGG | + | chr7.3:25308855-25308874 | MS.gene73750:CDS | 40.0% | |
| GAGAGACAATGTAGGAGAAA+TGG | + | chr7.3:25309814-25309833 | MS.gene73750:intron | 40.0% | |
| GCAAAAGACCTCTACAATCA+TGG | + | chr7.3:25310085-25310104 | MS.gene73750:CDS | 40.0% | |
| GGAACCATAGTCAAAGAAAC+GGG | + | chr7.3:25309606-25309625 | MS.gene73750:intron | 40.0% | |
| TCGGTCGGAAAAATCTAAAG+GGG | - | chr7.3:25310400-25310419 | None:intergenic | 40.0% | |
| TCTTTGACTATGGTTCCAGT+AGG | - | chr7.3:25309603-25309622 | None:intergenic | 40.0% | |
| TGAGTGTGCAGCAAGAAAAA+AGG | + | chr7.3:25310507-25310526 | MS.gene73750:CDS | 40.0% | |
| TGATCCTGCATTTCTAACTG+TGG | - | chr7.3:25310549-25310568 | None:intergenic | 40.0% | |
| ! | AACGAACTTGTTCTTGCGAA+GGG | - | chr7.3:25308482-25308501 | None:intergenic | 40.0% |
| ! | ATCAGCTTTTCTCATACGCT+CGG | - | chr7.3:25309404-25309423 | None:intergenic | 40.0% |
| ! | CAGTTGTTGCTTATCAGAAG+AGG | + | chr7.3:25309978-25309997 | MS.gene73750:CDS | 40.0% |
| ! | CATTGTCATTTGTCAGTGTC+CGG | + | chr7.3:25310259-25310278 | MS.gene73750:intron | 40.0% |
| ! | TTCTTTGGAAGAGGGGAAAA+TGG | + | chr7.3:25309219-25309238 | MS.gene73750:CDS | 40.0% |
| !! | GATAGCTTTGAACCAATCCA+TGG | + | chr7.3:25308815-25308834 | MS.gene73750:CDS | 40.0% |
| !! | TGCACAACGTTTTGTTCCAA+TGG | + | chr7.3:25309285-25309304 | MS.gene73750:CDS | 40.0% |
| !! | TTTTAGAGGCTTTTGCACAG+AGG | - | chr7.3:25310011-25310030 | None:intergenic | 40.0% |
| AGAGAGACTGAAGCAGAATG+AGG | + | chr7.3:25310574-25310593 | MS.gene73750:CDS | 45.0% | |
| ATCTAACAACATGTGGACCC+CGG | - | chr7.3:25308798-25308817 | None:intergenic | 45.0% | |
| CAAGCCCGTTTCTTTGACTA+TGG | - | chr7.3:25309613-25309632 | None:intergenic | 45.0% | |
| CATGGTGTGCTTCTATGTGA+AGG | + | chr7.3:25308833-25308852 | MS.gene73750:CDS | 45.0% | |
| CTTCTAAATGTGGCATGTGG+AGG | + | chr7.3:25309046-25309065 | MS.gene73750:CDS | 45.0% | |
| CTTTGGTGGAGTTCATACCA+AGG | - | chr7.3:25310111-25310130 | None:intergenic | 45.0% | |
| GAAACACGTGGAACTATGAC+CGG | - | chr7.3:25308776-25308795 | None:intergenic | 45.0% | |
| GCTCCTGATGGTTTGATTGA+AGG | + | chr7.3:25309313-25309332 | MS.gene73750:CDS | 45.0% | |
| GTCATAGTTCCACGTGTTTC+CGG | + | chr7.3:25308776-25308795 | MS.gene73750:CDS | 45.0% | |
| GTGTCTTCTTCGTACCATGA+TGG | - | chr7.3:25308872-25308891 | None:intergenic | 45.0% | |
| TACCAAGGCCATGATTGTAG+AGG | - | chr7.3:25310096-25310115 | None:intergenic | 45.0% | |
| TCATAGTTCCACGTGTTTCC+GGG | + | chr7.3:25308777-25308796 | MS.gene73750:CDS | 45.0% | |
| TGAAGTAGTGACTCAGACAC+CGG | - | chr7.3:25310281-25310300 | None:intergenic | 45.0% | |
| ! | CAACGAACTTGTTCTTGCGA+AGG | - | chr7.3:25308483-25308502 | None:intergenic | 45.0% |
| ! | CATAGAAGCACACCATGGAT+TGG | - | chr7.3:25308830-25308849 | None:intergenic | 45.0% |
| ! | CTTCACATAGAAGCACACCA+TGG | - | chr7.3:25308835-25308854 | None:intergenic | 45.0% |
| ! | GGTAGAGTACTAGAGTCTTC+TGG | + | chr7.3:25309708-25309727 | MS.gene73750:intron | 45.0% |
| ! | TCAGCTTTTCTCATACGCTC+GGG | - | chr7.3:25309403-25309422 | None:intergenic | 45.0% |
| CATAGTTCCACGTGTTTCCG+GGG | + | chr7.3:25308778-25308797 | MS.gene73750:CDS | 50.0% | |
| CCATCAGGAGCAAAAGCCAT+TGG | - | chr7.3:25309304-25309323 | None:intergenic | 50.0% | |
| GACCTCTACAATCATGGCCT+TGG | + | chr7.3:25310091-25310110 | MS.gene73750:CDS | 50.0% | |
| TAGAACACGAGGGAGAATGC+CGG | - | chr7.3:25308443-25308462 | None:intergenic | 50.0% | |
| TCTTATAGTCGGCTATGGCG+CGG | + | chr7.3:25308748-25308767 | MS.gene73750:CDS | 50.0% | |
| ! | AGAAGGGGCAGAGTTTCTAG+AGG | + | chr7.3:25310144-25310163 | MS.gene73750:CDS | 50.0% |
| ! | CCAATGGCTTTTGCTCCTGA+TGG | + | chr7.3:25309301-25309320 | MS.gene73750:CDS | 50.0% |
| ! | GGTGCCACAGTTAGAAATGC+AGG | + | chr7.3:25310542-25310561 | MS.gene73750:CDS | 50.0% |
| !! | TGATAAGCAAAGGGGCATCC+CGG | - | chr7.3:25309445-25309464 | None:intergenic | 50.0% |
| AGGGAGAATGCCGGATAGGT+CGG | - | chr7.3:25308434-25308453 | None:intergenic | 55.0% | |
| GGGATGCCCCTTTGCTTATC+AGG | + | chr7.3:25309444-25309463 | MS.gene73750:CDS | 55.0% | |
| ATGTGGACCCCGGAAACACG+TGG | - | chr7.3:25308788-25308807 | None:intergenic | 60.0% | |
| CACGAGGGAGAATGCCGGAT+AGG | - | chr7.3:25308438-25308457 | None:intergenic | 60.0% | |
| AGTCGGCTATGGCGCGGTAC+CGG | + | chr7.3:25308754-25308773 | MS.gene73750:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 25308424 | 25310745 | 25308424 | ID=MS.gene73750 |
| chr7.3 | mRNA | 25308424 | 25310745 | 25308424 | ID=MS.gene73750.t1;Parent=MS.gene73750 |
| chr7.3 | exon | 25308424 | 25308511 | 25308424 | ID=MS.gene73750.t1.exon1;Parent=MS.gene73750.t1 |
| chr7.3 | CDS | 25308424 | 25308511 | 25308424 | ID=cds.MS.gene73750.t1;Parent=MS.gene73750.t1 |
| chr7.3 | exon | 25308732 | 25309465 | 25308732 | ID=MS.gene73750.t1.exon2;Parent=MS.gene73750.t1 |
| chr7.3 | CDS | 25308732 | 25309465 | 25308732 | ID=cds.MS.gene73750.t1;Parent=MS.gene73750.t1 |
| chr7.3 | exon | 25309965 | 25310165 | 25309965 | ID=MS.gene73750.t1.exon3;Parent=MS.gene73750.t1 |
| chr7.3 | CDS | 25309965 | 25310165 | 25309965 | ID=cds.MS.gene73750.t1;Parent=MS.gene73750.t1 |
| chr7.3 | exon | 25310494 | 25310745 | 25310494 | ID=MS.gene73750.t1.exon4;Parent=MS.gene73750.t1 |
| chr7.3 | CDS | 25310494 | 25310745 | 25310494 | ID=cds.MS.gene73750.t1;Parent=MS.gene73750.t1 |
| Gene Sequence |
| Protein sequence |
