Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73911.t1 | XP_003601529.1 | 81.5 | 541 | 5 | 2 | 1 | 446 | 1 | 541 | 5.20E-239 | 836.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73911.t1 | Q8GYF4 | 63.8 | 542 | 100 | 2 | 1 | 446 | 1 | 542 | 1.5e-189 | 663.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73911.t1 | B2G3Q0 | 81.5 | 541 | 5 | 2 | 1 | 446 | 1 | 541 | 3.8e-239 | 836.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050645 | MS.gene73911 | 0.820859 | 5.49E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73911.t1 | MTR_3g082700 | 99.123 | 228 | 2 | 0 | 1 | 228 | 1 | 228 | 2.70e-159 | 461 |
| MS.gene73911.t1 | MTR_3g082700 | 98.190 | 221 | 3 | 1 | 227 | 446 | 321 | 541 | 2.29e-153 | 446 |
| MS.gene73911.t1 | MTR_1g074930 | 78.636 | 220 | 45 | 1 | 227 | 446 | 321 | 538 | 6.63e-124 | 370 |
| MS.gene73911.t1 | MTR_1g074930 | 79.372 | 223 | 45 | 1 | 5 | 226 | 4 | 226 | 7.17e-119 | 358 |
| MS.gene73911.t1 | MTR_1g069935 | 73.469 | 245 | 64 | 1 | 1 | 244 | 1 | 245 | 2.34e-123 | 369 |
| MS.gene73911.t1 | MTR_1g069935 | 78.607 | 201 | 43 | 0 | 227 | 427 | 318 | 518 | 3.94e-113 | 342 |
| MS.gene73911.t1 | MTR_7g096870 | 76.106 | 226 | 54 | 0 | 1 | 226 | 1 | 226 | 5.19e-122 | 366 |
| MS.gene73911.t1 | MTR_7g096870 | 74.886 | 219 | 54 | 1 | 227 | 444 | 318 | 536 | 5.44e-107 | 327 |
| MS.gene73911.t1 | MTR_1g074940 | 75.664 | 226 | 54 | 1 | 1 | 226 | 1 | 225 | 8.76e-118 | 354 |
| MS.gene73911.t1 | MTR_1g074940 | 70.681 | 191 | 43 | 1 | 227 | 417 | 323 | 500 | 8.22e-90 | 282 |
| MS.gene73911.t1 | MTR_1g043200 | 77.333 | 225 | 50 | 1 | 5 | 228 | 4 | 228 | 9.93e-118 | 355 |
| MS.gene73911.t1 | MTR_1g043200 | 78.922 | 204 | 43 | 0 | 227 | 430 | 321 | 524 | 2.07e-117 | 354 |
| MS.gene73911.t1 | MTR_1g043220 | 79.024 | 205 | 43 | 0 | 227 | 431 | 321 | 525 | 1.72e-117 | 354 |
| MS.gene73911.t1 | MTR_1g043220 | 76.444 | 225 | 52 | 1 | 5 | 228 | 4 | 228 | 5.97e-117 | 353 |
| MS.gene73911.t1 | MTR_1g043290 | 76.526 | 213 | 48 | 1 | 227 | 439 | 321 | 531 | 2.80e-117 | 353 |
| MS.gene73911.t1 | MTR_1g043290 | 76.444 | 225 | 52 | 1 | 5 | 228 | 4 | 228 | 1.20e-116 | 352 |
| MS.gene73911.t1 | MTR_1g069930 | 67.176 | 262 | 76 | 3 | 1 | 252 | 1 | 262 | 3.39e-117 | 353 |
| MS.gene73911.t1 | MTR_1g069930 | 67.593 | 216 | 69 | 1 | 227 | 442 | 319 | 533 | 2.18e-99 | 308 |
| MS.gene73911.t1 | MTR_7g096880 | 77.434 | 226 | 51 | 0 | 1 | 226 | 1 | 226 | 1.57e-114 | 347 |
| MS.gene73911.t1 | MTR_7g096880 | 76.606 | 218 | 51 | 0 | 227 | 444 | 316 | 533 | 6.70e-110 | 335 |
| MS.gene73911.t1 | MTR_1g028600 | 69.231 | 221 | 68 | 0 | 6 | 226 | 3 | 223 | 6.17e-103 | 317 |
| MS.gene73911.t1 | MTR_1g028600 | 49.537 | 216 | 98 | 2 | 227 | 442 | 316 | 520 | 2.22e-58 | 200 |
| MS.gene73911.t1 | MTR_5g068140 | 69.545 | 220 | 67 | 0 | 7 | 226 | 6 | 225 | 7.92e-102 | 315 |
| MS.gene73911.t1 | MTR_5g068140 | 50.000 | 232 | 90 | 4 | 227 | 443 | 321 | 541 | 6.75e-62 | 210 |
| MS.gene73911.t1 | MTR_4g083960 | 57.269 | 227 | 88 | 4 | 1 | 226 | 1 | 219 | 7.27e-68 | 225 |
| MS.gene73911.t1 | MTR_4g083960 | 54.028 | 211 | 83 | 6 | 226 | 432 | 312 | 512 | 9.44e-66 | 219 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73911.t1 | AT2G32830 | 81.416 | 226 | 42 | 0 | 1 | 226 | 1 | 226 | 8.95e-127 | 378 |
| MS.gene73911.t1 | AT2G32830 | 73.303 | 221 | 58 | 1 | 227 | 446 | 322 | 542 | 2.00e-115 | 349 |
| MS.gene73911.t1 | AT3G54700 | 75.102 | 245 | 60 | 1 | 1 | 244 | 1 | 245 | 2.91e-124 | 372 |
| MS.gene73911.t1 | AT3G54700 | 78.218 | 202 | 44 | 0 | 227 | 428 | 317 | 518 | 5.78e-114 | 345 |
| MS.gene73911.t1 | AT3G54700 | 75.102 | 245 | 60 | 1 | 1 | 244 | 1 | 245 | 2.91e-124 | 372 |
| MS.gene73911.t1 | AT3G54700 | 78.218 | 202 | 44 | 0 | 227 | 428 | 317 | 518 | 5.78e-114 | 345 |
| MS.gene73911.t1 | AT2G38940 | 73.469 | 245 | 64 | 1 | 1 | 244 | 1 | 245 | 1.59e-123 | 370 |
| MS.gene73911.t1 | AT2G38940 | 79.592 | 196 | 40 | 0 | 227 | 422 | 321 | 516 | 8.40e-112 | 339 |
| MS.gene73911.t1 | AT5G43350 | 77.434 | 226 | 51 | 0 | 1 | 226 | 1 | 226 | 4.27e-122 | 365 |
| MS.gene73911.t1 | AT5G43350 | 75.000 | 204 | 51 | 0 | 227 | 430 | 320 | 523 | 3.94e-108 | 330 |
| MS.gene73911.t1 | AT5G43370 | 76.991 | 226 | 52 | 0 | 1 | 226 | 1 | 226 | 8.93e-121 | 362 |
| MS.gene73911.t1 | AT5G43370 | 75.000 | 204 | 51 | 0 | 227 | 430 | 320 | 523 | 4.57e-96 | 298 |
| MS.gene73911.t1 | AT5G43370 | 76.991 | 226 | 52 | 0 | 1 | 226 | 1 | 226 | 8.93e-121 | 362 |
| MS.gene73911.t1 | AT5G43370 | 75.000 | 204 | 51 | 0 | 227 | 430 | 320 | 523 | 4.57e-96 | 298 |
| MS.gene73911.t1 | AT5G43360 | 76.106 | 226 | 54 | 0 | 1 | 226 | 1 | 226 | 2.89e-119 | 358 |
| MS.gene73911.t1 | AT5G43360 | 75.743 | 202 | 49 | 0 | 227 | 428 | 320 | 521 | 4.71e-109 | 332 |
| MS.gene73911.t1 | AT5G43340 | 67.401 | 227 | 73 | 1 | 1 | 226 | 1 | 227 | 5.33e-103 | 316 |
| MS.gene73911.t1 | AT5G43340 | 57.692 | 208 | 75 | 1 | 227 | 434 | 321 | 515 | 3.34e-82 | 263 |
| MS.gene73911.t1 | AT4G08878 | 69.388 | 196 | 60 | 0 | 31 | 226 | 13 | 208 | 2.37e-88 | 271 |
| MS.gene73911.t1 | AT1G76430 | 53.982 | 226 | 94 | 4 | 5 | 226 | 3 | 222 | 3.24e-71 | 234 |
| MS.gene73911.t1 | AT1G76430 | 47.938 | 194 | 90 | 5 | 237 | 427 | 328 | 513 | 2.13e-51 | 182 |
| MS.gene73911.t1 | AT1G20860 | 53.153 | 222 | 93 | 4 | 6 | 226 | 3 | 214 | 1.57e-67 | 224 |
| MS.gene73911.t1 | AT1G20860 | 48.095 | 210 | 103 | 4 | 236 | 439 | 317 | 526 | 3.60e-57 | 197 |
| MS.gene73911.t1 | AT1G20860 | 53.153 | 222 | 93 | 4 | 6 | 226 | 55 | 266 | 3.16e-67 | 225 |
| MS.gene73911.t1 | AT1G20860 | 48.325 | 209 | 102 | 4 | 237 | 439 | 370 | 578 | 9.31e-57 | 197 |
| MS.gene73911.t1 | AT4G08895 | 50.350 | 143 | 39 | 1 | 224 | 366 | 20 | 130 | 1.13e-43 | 150 |
Find 82 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTTGTTTCTTTAGATTT+TGG | 0.112713 | 3.3:-69490691 | MS.gene73911:CDS |
| TGGTCTAACTCTTGCTCTTA+TGG | 0.192232 | 3.3:-69490774 | MS.gene73911:CDS |
| TATGCAAGGGTTTGGAATTT+TGG | 0.193186 | 3.3:-69490567 | MS.gene73911:CDS |
| CTTGCTTCTGGCCTTTCTTT+TGG | 0.201610 | 3.3:-69490740 | MS.gene73911:CDS |
| ACAACAAAAGTGGTTGAATT+TGG | 0.258019 | 3.3:+69489681 | None:intergenic |
| TGGTTGGCTTGGGGACAAAA+TGG | 0.266103 | 3.3:-69490813 | MS.gene73911:CDS |
| GTATTCTCCTCTCTTGCTTC+TGG | 0.282043 | 3.3:-69490752 | MS.gene73911:CDS |
| AGCACTTTGTGGAACTGTTC+CGG | 0.298632 | 3.3:-69489889 | MS.gene73911:CDS |
| TACCAGAAGCTGATTATGTT+TGG | 0.328852 | 3.3:-69490454 | MS.gene73911:CDS |
| GTGGAACTGTTCCGGGATAC+TGG | 0.329105 | 3.3:-69489881 | MS.gene73911:CDS |
| TGGAGAATCATTCTCATGTT+TGG | 0.337056 | 3.3:-69490434 | MS.gene73911:CDS |
| GGAGCTATTATAGGTGCATT+TGG | 0.340643 | 3.3:-69489588 | MS.gene73911:CDS |
| CCAAGTAACTTGGTGACATT+TGG | 0.341844 | 3.3:+69490950 | None:intergenic |
| GCACTTTGTGGAACTGTTCC+GGG | 0.351063 | 3.3:-69489888 | MS.gene73911:CDS |
| CTCCAAACATAATCAGCTTC+TGG | 0.355251 | 3.3:+69490452 | None:intergenic |
| TTTACTGCTGCTGATACATT+TGG | 0.358950 | 3.3:+69490878 | None:intergenic |
| GGGAAAGCTGGAGCTATTAT+AGG | 0.362181 | 3.3:-69489597 | MS.gene73911:CDS |
| GCTGCAGCGTCAACTTTATA+AGG | 0.364153 | 3.3:+69490485 | None:intergenic |
| ACTAAAAGAGAAAACAGAAT+TGG | 0.370784 | 3.3:-69489750 | MS.gene73911:CDS |
| ACATTTGGAGGCAAAGTTCC+AGG | 0.372446 | 3.3:+69490893 | None:intergenic |
| CCAAATGTCACCAAGTTACT+TGG | 0.375080 | 3.3:-69490950 | MS.gene73911:CDS |
| TTTCTTGTGCCAGAAGCTAA+TGG | 0.378357 | 3.3:-69489441 | MS.gene73911:CDS |
| CTTGCTGTGGTTAATTGTCT+TGG | 0.380235 | 3.3:-69489477 | MS.gene73911:CDS |
| CACTCAGCAAAGGGTACAAT+TGG | 0.385896 | 3.3:-69490716 | MS.gene73911:CDS |
| AAAGATATTTATAGTAGTAT+TGG | 0.386205 | 3.3:-69489984 | MS.gene73911:intron |
| GCAGGGTACCCTGCTGGTAT+TGG | 0.388751 | 3.3:-69489522 | MS.gene73911:CDS |
| ATCAACAAGCCTCCTCTAAT+AGG | 0.388915 | 3.3:-69489356 | MS.gene73911:CDS |
| GAAATGGTACCATTGTGTTT+TGG | 0.389577 | 3.3:+69491033 | None:intergenic |
| TTCACAGCCATCATAATTGC+TGG | 0.392806 | 3.3:-69491013 | MS.gene73911:CDS |
| AATGTATCAGCAGCAGTAAA+TGG | 0.399626 | 3.3:-69490875 | MS.gene73911:CDS |
| TCCTCTGCAGCAGGGAAAGC+TGG | 0.401210 | 3.3:-69489609 | MS.gene73911:CDS |
| AGCCATCATAATTGCTGGTA+TGG | 0.413402 | 3.3:-69491008 | MS.gene73911:CDS |
| GCTCTTTGTGGCACTCTAGC+AGG | 0.420937 | 3.3:-69490848 | MS.gene73911:CDS |
| AGAAGCTAATGGAAAATCAT+TGG | 0.433339 | 3.3:-69489430 | MS.gene73911:CDS |
| TCGTGGCGCGTTTATAGCTT+CGG | 0.447395 | 3.3:-69490597 | MS.gene73911:CDS |
| ATGTTTGGCGCTGTTCCTGC+TGG | 0.448854 | 3.3:-69490419 | MS.gene73911:intron |
| TGACATTTGGTATGCAGAAA+AGG | 0.456001 | 3.3:+69490963 | None:intergenic |
| GGTTGGCTTGGGGACAAAAT+GGG | 0.456779 | 3.3:-69490812 | MS.gene73911:CDS |
| GTAAATGGTGTTGCTCTTTG+TGG | 0.464585 | 3.3:-69490860 | MS.gene73911:CDS |
| GTTCCAGGCTTGAGTGCACC+TGG | 0.466167 | 3.3:+69490908 | None:intergenic |
| ACAACGCTTATAGCACTTTG+TGG | 0.467494 | 3.3:-69489900 | MS.gene73911:CDS |
| TTCTTCATTCCAATACCAGC+AGG | 0.476749 | 3.3:+69489513 | None:intergenic |
| ACTGCTGCTGATACATTTGG+AGG | 0.480011 | 3.3:+69490881 | None:intergenic |
| CACCCAGGTGCACTCAAGCC+TGG | 0.480902 | 3.3:-69490911 | MS.gene73911:CDS |
| CACAGGAACAGTCCTATTAG+AGG | 0.487695 | 3.3:+69489344 | None:intergenic |
| CAAGCCAACCAAAGAAAAGT+TGG | 0.491977 | 3.3:+69490825 | None:intergenic |
| TCGCTATTCCGTATGATCAT+TGG | 0.501987 | 3.3:-69489773 | MS.gene73911:CDS |
| CATGGTATATCCTCTGCAGC+AGG | 0.519226 | 3.3:-69489618 | MS.gene73911:CDS |
| TAGTATTGGTTGGCTTCCAC+CGG | 0.519880 | 3.3:-69489970 | MS.gene73911:CDS |
| CTTGTATGCTTCACAAAGCA+AGG | 0.520337 | 3.3:-69489562 | MS.gene73911:CDS |
| AGAAAGGCCAGAAGCAAGAG+AGG | 0.521035 | 3.3:+69490745 | None:intergenic |
| CAATTATGATGGCTGTGAAA+TGG | 0.521173 | 3.3:+69491017 | None:intergenic |
| GTATATTCTTCCAAGTAACT+TGG | 0.522891 | 3.3:+69490940 | None:intergenic |
| GACATAATAGTAGCTGAAAG+AGG | 0.523195 | 3.3:+69490641 | None:intergenic |
| CATGTAGACCTCAACCTAGC+CGG | 0.533609 | 3.3:+69489642 | None:intergenic |
| GCCATCATAATTGCTGGTAT+GGG | 0.536058 | 3.3:-69491007 | MS.gene73911:CDS |
| TTGCTGAGTGACCAAAAGAA+AGG | 0.540760 | 3.3:+69490729 | None:intergenic |
| ATGTAGACCTCAACCTAGCC+GGG | 0.545552 | 3.3:+69489643 | None:intergenic |
| AGAGATGCAGGGTACCCTGC+TGG | 0.548047 | 3.3:-69489528 | MS.gene73911:CDS |
| ATATTTATAGTAGTATTGGT+TGG | 0.553131 | 3.3:-69489980 | MS.gene73911:CDS |
| TCCCATACCAGCAATTATGA+TGG | 0.555478 | 3.3:+69491006 | None:intergenic |
| CTCGGCAGGCACAACAAAAG+TGG | 0.561882 | 3.3:+69489671 | None:intergenic |
| GCCACCGTGAACCAGTATCC+CGG | 0.570413 | 3.3:+69489870 | None:intergenic |
| TGTTCCGGGATACTGGTTCA+CGG | 0.578109 | 3.3:-69489874 | MS.gene73911:CDS |
| CTAGCCGGGAAAATCTCGGC+AGG | 0.590971 | 3.3:+69489657 | None:intergenic |
| CAACCTAGCCGGGAAAATCT+CGG | 0.596897 | 3.3:+69489653 | None:intergenic |
| AGGTTGAGGTCTACATGTCA+TGG | 0.608393 | 3.3:-69489636 | MS.gene73911:CDS |
| TCCAGCTTTCCCTGCTGCAG+AGG | 0.609930 | 3.3:+69489608 | None:intergenic |
| ACATAATAGTAGCTGAAAGA+GGG | 0.611460 | 3.3:+69490642 | None:intergenic |
| ATTGCATTCATATCTTGTGC+CGG | 0.613095 | 3.3:+69489951 | None:intergenic |
| AAATCATTGGAAGAAATGAG+TGG | 0.620125 | 3.3:-69489417 | MS.gene73911:CDS |
| GCATTCATATCTTGTGCCGG+TGG | 0.633100 | 3.3:+69489954 | None:intergenic |
| ATGGTATATCCTCTGCAGCA+GGG | 0.647894 | 3.3:-69489617 | MS.gene73911:CDS |
| TTCCAGGCTTGAGTGCACCT+GGG | 0.648892 | 3.3:+69490909 | None:intergenic |
| GCAGCGTCAACTTTATAAGG+CGG | 0.662919 | 3.3:+69490488 | None:intergenic |
| ATCATGGCTCGTGAACAACT+AGG | 0.672656 | 3.3:-69491079 | MS.gene73911:CDS |
| AGGAACAGTCCTATTAGAGG+AGG | 0.680131 | 3.3:+69489347 | None:intergenic |
| AGAATATACTACACACACCC+AGG | 0.681223 | 3.3:-69490926 | MS.gene73911:CDS |
| TCTTCATTCCAATACCAGCA+GGG | 0.696508 | 3.3:+69489514 | None:intergenic |
| TTGATGCAGCCAAAACACAA+TGG | 0.702246 | 3.3:-69491042 | MS.gene73911:CDS |
| GTAATAGTAATACATCACAC+AGG | 0.741588 | 3.3:+69489327 | None:intergenic |
| TCCGGGATACTGGTTCACGG+TGG | 0.750080 | 3.3:-69489871 | MS.gene73911:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGATATTTATAGTAGTAT+TGG | - | chr3.3:69490433-69490452 | MS.gene73911:CDS | 15.0% |
| !!! | ACTTTTTTCTTTGCAAATTT+TGG | - | chr3.3:69490712-69490731 | MS.gene73911:CDS | 20.0% |
| !!! | ATATTTATAGTAGTATTGGT+TGG | - | chr3.3:69490437-69490456 | MS.gene73911:CDS | 20.0% |
| ! | ACTAAAAGAGAAAACAGAAT+TGG | - | chr3.3:69490667-69490686 | MS.gene73911:CDS | 25.0% |
| ! | ACTACTAAATCACTAACATT+TGG | + | chr3.3:69490086-69490105 | None:intergenic | 25.0% |
| ! | ATGGGAAGAAAAAAAGTTTA+TGG | - | chr3.3:69489623-69489642 | MS.gene73911:CDS | 25.0% |
| !!! | CTCTTTGTTTCTTTAGATTT+TGG | - | chr3.3:69489726-69489745 | MS.gene73911:CDS | 25.0% |
| AAATCATTGGAAGAAATGAG+TGG | - | chr3.3:69491000-69491019 | MS.gene73911:CDS | 30.0% | |
| ACAACAAAAGTGGTTGAATT+TGG | + | chr3.3:69490739-69490758 | None:intergenic | 30.0% | |
| ACATAATAGTAGCTGAAAGA+GGG | + | chr3.3:69489778-69489797 | None:intergenic | 30.0% | |
| ACCTATATAGATAAGTAGCT+CGG | + | chr3.3:69490180-69490199 | None:intergenic | 30.0% | |
| AGAAGCTAATGGAAAATCAT+TGG | - | chr3.3:69490987-69491006 | MS.gene73911:CDS | 30.0% | |
| CAAGAAAAAGTAGACAAGAT+AGG | - | chr3.3:69490280-69490299 | MS.gene73911:intron | 30.0% | |
| GTATATTCTTCCAAGTAACT+TGG | + | chr3.3:69489480-69489499 | None:intergenic | 30.0% | |
| ! | CGTTTTGCAATTCAACTAAT+GGG | - | chr3.3:69490589-69490608 | MS.gene73911:CDS | 30.0% |
| ! | CTTTTAGTCCAATGATCATA+CGG | + | chr3.3:69490655-69490674 | None:intergenic | 30.0% |
| ! | TCGTTTTGCAATTCAACTAA+TGG | - | chr3.3:69490588-69490607 | MS.gene73911:CDS | 30.0% |
| ! | TGCTTTTGATCATGCTTTTA+AGG | - | chr3.3:69489904-69489923 | MS.gene73911:CDS | 30.0% |
| !! | AATGATTTTCCATTAGCTTC+TGG | + | chr3.3:69490988-69491007 | None:intergenic | 30.0% |
| !!! | CAGTTTTGGTTTGTTTAGTA+AGG | - | chr3.3:69490318-69490337 | MS.gene73911:intron | 30.0% |
| !!! | TGTTTCTTTAGATTTTGGCT+AGG | - | chr3.3:69489731-69489750 | MS.gene73911:CDS | 30.0% |
| !!! | TTTAGATTTTGGCTAGGTTT+TGG | - | chr3.3:69489737-69489756 | MS.gene73911:CDS | 30.0% |
| AAGGAGTTTCTTAGAAGACA+CGG | - | chr3.3:69490337-69490356 | MS.gene73911:intron | 35.0% | |
| AATATCGAGAAGAAACCAAG+TGG | + | chr3.3:69490386-69490405 | None:intergenic | 35.0% | |
| AATGTATCAGCAGCAGTAAA+TGG | - | chr3.3:69489542-69489561 | MS.gene73911:CDS | 35.0% | |
| ACCGAGCTACTTATCTATAT+AGG | - | chr3.3:69490176-69490195 | MS.gene73911:intron | 35.0% | |
| ATCCAAAAAAGAGAGATGCA+GGG | - | chr3.3:69490878-69490897 | MS.gene73911:CDS | 35.0% | |
| ATTGCATTCATATCTTGTGC+CGG | + | chr3.3:69490469-69490488 | None:intergenic | 35.0% | |
| CAATAGTAAGTTAAACCAGC+AGG | + | chr3.3:69490016-69490035 | None:intergenic | 35.0% | |
| CAATTATGATGGCTGTGAAA+TGG | + | chr3.3:69489403-69489422 | None:intergenic | 35.0% | |
| GACATAATAGTAGCTGAAAG+AGG | + | chr3.3:69489779-69489798 | None:intergenic | 35.0% | |
| TACCAGAAGCTGATTATGTT+TGG | - | chr3.3:69489963-69489982 | MS.gene73911:CDS | 35.0% | |
| TATGCTAACAAAAAGACTCG+TGG | - | chr3.3:69489803-69489822 | MS.gene73911:CDS | 35.0% | |
| TGACATTTGGTATGCAGAAA+AGG | + | chr3.3:69489457-69489476 | None:intergenic | 35.0% | |
| TGGAGAATCATTCTCATGTT+TGG | - | chr3.3:69489983-69490002 | MS.gene73911:CDS | 35.0% | |
| TTTACTGCTGCTGATACATT+TGG | + | chr3.3:69489542-69489561 | None:intergenic | 35.0% | |
| ! | AAAAGTTTACCTTGCTGTCT+CGG | + | chr3.3:69490053-69490072 | None:intergenic | 35.0% |
| ! | GAAATGGTACCATTGTGTTT+TGG | + | chr3.3:69489387-69489406 | None:intergenic | 35.0% |
| ! | GTGGCTTTTATCGATGTTAT+TGG | - | chr3.3:69490565-69490584 | MS.gene73911:CDS | 35.0% |
| !! | CTGCTGGTTTAACTTACTAT+TGG | - | chr3.3:69490014-69490033 | MS.gene73911:intron | 35.0% |
| !! | TATGCAAGGGTTTGGAATTT+TGG | - | chr3.3:69489850-69489869 | MS.gene73911:CDS | 35.0% |
| !! | TTTTGGCTAGGTTTTGGTAT+TGG | - | chr3.3:69489743-69489762 | MS.gene73911:CDS | 35.0% |
| !!! | AACTTTTCTTTGGTTGGCTT+GGG | - | chr3.3:69489594-69489613 | MS.gene73911:CDS | 35.0% |
| ACAACGCTTATAGCACTTTG+TGG | - | chr3.3:69490517-69490536 | MS.gene73911:CDS | 40.0% | |
| AGAATATACTACACACACCC+AGG | - | chr3.3:69489491-69489510 | MS.gene73911:CDS | 40.0% | |
| AGCCATCATAATTGCTGGTA+TGG | - | chr3.3:69489409-69489428 | MS.gene73911:CDS | 40.0% | |
| ATCAACAAGCCTCCTCTAAT+AGG | - | chr3.3:69491061-69491080 | MS.gene73911:CDS | 40.0% | |
| CAAGCCAACCAAAGAAAAGT+TGG | + | chr3.3:69489595-69489614 | None:intergenic | 40.0% | |
| CCAAATGTCACCAAGTTACT+TGG | - | chr3.3:69489467-69489486 | MS.gene73911:CDS | 40.0% | |
| CTCCAAACATAATCAGCTTC+TGG | + | chr3.3:69489968-69489987 | None:intergenic | 40.0% | |
| CTTGTATGCTTCACAAAGCA+AGG | - | chr3.3:69490855-69490874 | MS.gene73911:CDS | 40.0% | |
| GATCCAAAAAAGAGAGATGC+AGG | - | chr3.3:69490877-69490896 | MS.gene73911:CDS | 40.0% | |
| GCCATCATAATTGCTGGTAT+GGG | - | chr3.3:69489410-69489429 | MS.gene73911:CDS | 40.0% | |
| GGAGCTATTATAGGTGCATT+TGG | - | chr3.3:69490829-69490848 | MS.gene73911:CDS | 40.0% | |
| TCCCATACCAGCAATTATGA+TGG | + | chr3.3:69489414-69489433 | None:intergenic | 40.0% | |
| TCGCTATTCCGTATGATCAT+TGG | - | chr3.3:69490644-69490663 | MS.gene73911:CDS | 40.0% | |
| TCTTCATTCCAATACCAGCA+GGG | + | chr3.3:69490906-69490925 | None:intergenic | 40.0% | |
| TGGTCTAACTCTTGCTCTTA+TGG | - | chr3.3:69489643-69489662 | MS.gene73911:CDS | 40.0% | |
| TTCACAGCCATCATAATTGC+TGG | - | chr3.3:69489404-69489423 | MS.gene73911:CDS | 40.0% | |
| TTCTTCATTCCAATACCAGC+AGG | + | chr3.3:69490907-69490926 | None:intergenic | 40.0% | |
| TTGATGCAGCCAAAACACAA+TGG | - | chr3.3:69489375-69489394 | MS.gene73911:CDS | 40.0% | |
| TTGCTGAGTGACCAAAAGAA+AGG | + | chr3.3:69489691-69489710 | None:intergenic | 40.0% | |
| TTTCTTGTGCCAGAAGCTAA+TGG | - | chr3.3:69490976-69490995 | MS.gene73911:CDS | 40.0% | |
| ! | AAAGTTTACCTTGCTGTCTC+GGG | + | chr3.3:69490052-69490071 | None:intergenic | 40.0% |
| ! | CCAAGTAACTTGGTGACATT+TGG | + | chr3.3:69489470-69489489 | None:intergenic | 40.0% |
| ! | CTTGCTGTGGTTAATTGTCT+TGG | - | chr3.3:69490940-69490959 | MS.gene73911:CDS | 40.0% |
| ! | GTGCAAGACAAGAACAGTTT+TGG | - | chr3.3:69490304-69490323 | MS.gene73911:intron | 40.0% |
| ! | TCTTTTGGTCACTCAGCAAA+GGG | - | chr3.3:69489692-69489711 | MS.gene73911:CDS | 40.0% |
| ! | TTCTTTTGGTCACTCAGCAA+AGG | - | chr3.3:69489691-69489710 | MS.gene73911:CDS | 40.0% |
| !! | CAACTTTTCTTTGGTTGGCT+TGG | - | chr3.3:69489593-69489612 | MS.gene73911:CDS | 40.0% |
| !! | CTTCGGTTTTTGCTATGCAA+GGG | - | chr3.3:69489837-69489856 | MS.gene73911:CDS | 40.0% |
| !! | GTAAATGGTGTTGCTCTTTG+TGG | - | chr3.3:69489557-69489576 | MS.gene73911:CDS | 40.0% |
| !! | GTTTTTGCTATGCAAGGGTT+TGG | - | chr3.3:69489842-69489861 | MS.gene73911:CDS | 40.0% |
| !!! | ACTTTTCTTTGGTTGGCTTG+GGG | - | chr3.3:69489595-69489614 | MS.gene73911:CDS | 40.0% |
| !!! | ATTGTGTTTTGGCTGCATCA+AGG | + | chr3.3:69489376-69489395 | None:intergenic | 40.0% |
| !!! | CACTCTTATTTTGCTTGCTG+TGG | - | chr3.3:69490927-69490946 | MS.gene73911:CDS | 40.0% |
| !!! | TACCCTGCATCTCTCTTTTT+TGG | + | chr3.3:69490883-69490902 | None:intergenic | 40.0% |
| !!! | TTGTGTTTTGGCTGCATCAA+GGG | + | chr3.3:69489375-69489394 | None:intergenic | 40.0% |
| AAAATCCAGCGTTCGAACTC+TGG | + | chr3.3:69490120-69490139 | None:intergenic | 45.0% | |
| ACATTTGGAGGCAAAGTTCC+AGG | + | chr3.3:69489527-69489546 | None:intergenic | 45.0% | |
| ACTGCTGCTGATACATTTGG+AGG | + | chr3.3:69489539-69489558 | None:intergenic | 45.0% | |
| AGCACTTTGTGGAACTGTTC+CGG | - | chr3.3:69490528-69490547 | MS.gene73911:CDS | 45.0% | |
| AGGAACAGTCCTATTAGAGG+AGG | + | chr3.3:69491073-69491092 | None:intergenic | 45.0% | |
| AGGTTGAGGTCTACATGTCA+TGG | - | chr3.3:69490781-69490800 | MS.gene73911:CDS | 45.0% | |
| ATGGTATATCCTCTGCAGCA+GGG | - | chr3.3:69490800-69490819 | MS.gene73911:CDS | 45.0% | |
| CACAGGAACAGTCCTATTAG+AGG | + | chr3.3:69491076-69491095 | None:intergenic | 45.0% | |
| GCAGCGTCAACTTTATAAGG+CGG | + | chr3.3:69489932-69489951 | None:intergenic | 45.0% | |
| GCTGCAGCGTCAACTTTATA+AGG | + | chr3.3:69489935-69489954 | None:intergenic | 45.0% | |
| GGGAAAGCTGGAGCTATTAT+AGG | - | chr3.3:69490820-69490839 | MS.gene73911:CDS | 45.0% | |
| GTATTCTCCTCTCTTGCTTC+TGG | - | chr3.3:69489665-69489684 | MS.gene73911:CDS | 45.0% | |
| TAGCTCGGTTAGTGAGTGAA+AGG | + | chr3.3:69490165-69490184 | None:intergenic | 45.0% | |
| TGCTTGGAACAACTTCCACT+TGG | - | chr3.3:69490368-69490387 | MS.gene73911:intron | 45.0% | |
| ! | CACTCAGCAAAGGGTACAAT+TGG | - | chr3.3:69489701-69489720 | MS.gene73911:CDS | 45.0% |
| ! | CAGGCCAACTTTTCTTTGGT+TGG | - | chr3.3:69489588-69489607 | MS.gene73911:CDS | 45.0% |
| ! | CTAGCAGGCCAACTTTTCTT+TGG | - | chr3.3:69489584-69489603 | MS.gene73911:CDS | 45.0% |
| !! | CAAGGGTTTGGAATTTTGGC+TGG | - | chr3.3:69489854-69489873 | MS.gene73911:CDS | 45.0% |
| !! | CTTGCTTCTGGCCTTTCTTT+TGG | - | chr3.3:69489677-69489696 | MS.gene73911:CDS | 45.0% |
| !! | GCTTCGGTTTTTGCTATGCA+AGG | - | chr3.3:69489836-69489855 | MS.gene73911:CDS | 45.0% |
| !! | TAGTATTGGTTGGCTTCCAC+CGG | - | chr3.3:69490447-69490466 | MS.gene73911:CDS | 45.0% |
| !! | TGGCTAGGTTTTGGTATTGG+TGG | - | chr3.3:69489746-69489765 | MS.gene73911:CDS | 45.0% |
| AGAAAGGCCAGAAGCAAGAG+AGG | + | chr3.3:69489675-69489694 | None:intergenic | 50.0% | |
| AGACACGGTCTTCATCTGCT+TGG | - | chr3.3:69490352-69490371 | MS.gene73911:intron | 50.0% | |
| AGTTTCCAGAGTTCGAACGC+TGG | - | chr3.3:69490112-69490131 | MS.gene73911:intron | 50.0% | |
| ATGTAGACCTCAACCTAGCC+GGG | + | chr3.3:69490777-69490796 | None:intergenic | 50.0% | |
| CAACCTAGCCGGGAAAATCT+CGG | + | chr3.3:69490767-69490786 | None:intergenic | 50.0% | |
| CATGGTATATCCTCTGCAGC+AGG | - | chr3.3:69490799-69490818 | MS.gene73911:CDS | 50.0% | |
| CATGTAGACCTCAACCTAGC+CGG | + | chr3.3:69490778-69490797 | None:intergenic | 50.0% | |
| GAATGCAAAACAAGCAGCGC+AGG | - | chr3.3:69490219-69490238 | MS.gene73911:intron | 50.0% | |
| GCACTTTGTGGAACTGTTCC+GGG | - | chr3.3:69490529-69490548 | MS.gene73911:CDS | 50.0% | |
| GCATTCATATCTTGTGCCGG+TGG | + | chr3.3:69490466-69490485 | None:intergenic | 50.0% | |
| GGACATGTCAAGTGTGTTGC+AGG | - | chr3.3:69490240-69490259 | MS.gene73911:intron | 50.0% | |
| TCGTGGCGCGTTTATAGCTT+CGG | - | chr3.3:69489820-69489839 | MS.gene73911:CDS | 50.0% | |
| TGAAAATGCCCGAGACAGCA+AGG | - | chr3.3:69490041-69490060 | MS.gene73911:intron | 50.0% | |
| ! | AGATTTTCCCGGCTAGGTTG+AGG | - | chr3.3:69490767-69490786 | MS.gene73911:CDS | 50.0% |
| !! | GGTTGGCTTGGGGACAAAAT+GGG | - | chr3.3:69489605-69489624 | MS.gene73911:CDS | 50.0% |
| !! | TGGTTGGCTTGGGGACAAAA+TGG | - | chr3.3:69489604-69489623 | MS.gene73911:CDS | 50.0% |
| !! | TGTTCCGGGATACTGGTTCA+CGG | - | chr3.3:69490543-69490562 | MS.gene73911:CDS | 50.0% |
| !!! | GGGTTTGGAATTTTGGCTGG+TGG | - | chr3.3:69489857-69489876 | MS.gene73911:CDS | 50.0% |
| ATGTTTGGCGCTGTTCCTGC+TGG | - | chr3.3:69489998-69490017 | MS.gene73911:intron | 55.0% | |
| CTCGGCAGGCACAACAAAAG+TGG | + | chr3.3:69490749-69490768 | None:intergenic | 55.0% | |
| GCTCTTTGTGGCACTCTAGC+AGG | - | chr3.3:69489569-69489588 | MS.gene73911:CDS | 55.0% | |
| GTGGAACTGTTCCGGGATAC+TGG | - | chr3.3:69490536-69490555 | MS.gene73911:CDS | 55.0% | |
| TTCCAGGCTTGAGTGCACCT+GGG | + | chr3.3:69489511-69489530 | None:intergenic | 55.0% | |
| ! | TGTGCCTGCCGAGATTTTCC+CGG | - | chr3.3:69490756-69490775 | MS.gene73911:CDS | 55.0% |
| CTAGCCGGGAAAATCTCGGC+AGG | + | chr3.3:69490763-69490782 | None:intergenic | 60.0% | |
| GCCACCGTGAACCAGTATCC+CGG | + | chr3.3:69490550-69490569 | None:intergenic | 60.0% | |
| GTTCCAGGCTTGAGTGCACC+TGG | + | chr3.3:69489512-69489531 | None:intergenic | 60.0% | |
| TCCAGCTTTCCCTGCTGCAG+AGG | + | chr3.3:69490812-69490831 | None:intergenic | 60.0% | |
| TCCTCTGCAGCAGGGAAAGC+TGG | - | chr3.3:69490808-69490827 | MS.gene73911:CDS | 60.0% | |
| ! | AGAGATGCAGGGTACCCTGC+TGG | - | chr3.3:69490889-69490908 | MS.gene73911:CDS | 60.0% |
| ! | CTGCCGAGATTTTCCCGGCT+AGG | - | chr3.3:69490761-69490780 | MS.gene73911:CDS | 60.0% |
| ! | GCAGGGTACCCTGCTGGTAT+TGG | - | chr3.3:69490895-69490914 | MS.gene73911:CDS | 60.0% |
| !! | TCCGGGATACTGGTTCACGG+TGG | - | chr3.3:69490546-69490565 | MS.gene73911:CDS | 60.0% |
| CACCCAGGTGCACTCAAGCC+TGG | - | chr3.3:69489506-69489525 | MS.gene73911:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 69489341 | 69491098 | 69489341 | ID=MS.gene73911 |
| chr3.3 | mRNA | 69489341 | 69491098 | 69489341 | ID=MS.gene73911.t1;Parent=MS.gene73911 |
| chr3.3 | exon | 69490420 | 69491098 | 69490420 | ID=MS.gene73911.t1.exon1;Parent=MS.gene73911.t1 |
| chr3.3 | CDS | 69490420 | 69491098 | 69490420 | ID=cds.MS.gene73911.t1;Parent=MS.gene73911.t1 |
| chr3.3 | exon | 69489341 | 69490002 | 69489341 | ID=MS.gene73911.t1.exon2;Parent=MS.gene73911.t1 |
| chr3.3 | CDS | 69489341 | 69490002 | 69489341 | ID=cds.MS.gene73911.t1;Parent=MS.gene73911.t1 |
| Gene Sequence |
| Protein sequence |
