Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74224.t1 | XP_003592814.1 | 93.9 | 460 | 22 | 3 | 73 | 527 | 83 | 541 | 1.50E-197 | 699.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74224.t1 | G7IAX9 | 93.9 | 460 | 22 | 3 | 73 | 527 | 83 | 541 | 1.1e-197 | 699.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055701 | MS.gene74224 | 0.83325 | 5.94E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74224.t1 | MTR_1g116330 | 93.923 | 543 | 15 | 7 | 1 | 527 | 1 | 541 | 0.0 | 1004 |
| MS.gene74224.t1 | MTR_2g061360 | 55.981 | 209 | 74 | 5 | 154 | 358 | 80 | 274 | 6.94e-67 | 218 |
| MS.gene74224.t1 | MTR_2g061290 | 56.284 | 183 | 67 | 5 | 156 | 334 | 81 | 254 | 1.05e-51 | 177 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74224.t1 | AT5G19900 | 50.891 | 505 | 160 | 22 | 1 | 460 | 1 | 462 | 3.97e-123 | 370 |
| MS.gene74224.t1 | AT5G19900 | 50.891 | 505 | 160 | 22 | 1 | 460 | 1 | 462 | 3.97e-123 | 370 |
| MS.gene74224.t1 | AT5G19900 | 50.891 | 505 | 160 | 22 | 1 | 460 | 1 | 462 | 3.97e-123 | 370 |
| MS.gene74224.t1 | AT5G19900 | 50.891 | 505 | 160 | 22 | 1 | 460 | 1 | 462 | 3.97e-123 | 370 |
| MS.gene74224.t1 | AT5G19900 | 50.891 | 505 | 160 | 22 | 1 | 460 | 1 | 462 | 3.97e-123 | 370 |
Find 160 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAGCATTAAACTTCTTCTT+AGG | 0.137829 | 1.2:-86331224 | None:intergenic |
| AGGAAATTAGGTTTGATATT+AGG | 0.152951 | 1.2:-86331014 | None:intergenic |
| TGAGATTAAAAGCAATAAAT+TGG | 0.191161 | 1.2:+86332021 | MS.gene74224:CDS |
| GGAAATTAGGTTTGATATTA+GGG | 0.217644 | 1.2:-86331013 | None:intergenic |
| TGGTAACCAAGAATATTATT+TGG | 0.220572 | 1.2:-86331143 | None:intergenic |
| ACTATTCCAAATAATATTCT+TGG | 0.229684 | 1.2:+86331137 | MS.gene74224:CDS |
| GGGTTCTGAAATTTCATGTT+AGG | 0.308757 | 1.2:-86330993 | None:intergenic |
| TTCGTCCCGGCTTGGAATTA+AGG | 0.311625 | 1.2:-86331034 | None:intergenic |
| CAGCCTAATCAAACCCTTCA+TGG | 0.312973 | 1.2:-86331435 | None:intergenic |
| GGCTTGGAATTAAGGAAATT+AGG | 0.314913 | 1.2:-86331026 | None:intergenic |
| TTCTTAATGGAGAGGGAGTT+AGG | 0.317672 | 1.2:+86331695 | MS.gene74224:CDS |
| GAATATTATTTGGAATAGTT+TGG | 0.330986 | 1.2:-86331133 | None:intergenic |
| TAGTCACCACCTCCATAGTT+AGG | 0.336769 | 1.2:-86331584 | None:intergenic |
| GTCTCAACAGCAGCTTCCTC+TGG | 0.346933 | 1.2:+86330968 | MS.gene74224:CDS |
| AAGCGAGGTGGTTTCAAATC+AGG | 0.354951 | 1.2:+86331997 | MS.gene74224:CDS |
| GAGTGGGGTGTGGATGGTTA+CGG | 0.357631 | 1.2:+86331410 | MS.gene74224:CDS |
| GAAGTAATAATAACAATAAC+TGG | 0.359197 | 1.2:+86331054 | MS.gene74224:CDS |
| ATAATAATGTCTTAGAGAAT+AGG | 0.363278 | 1.2:+86331606 | MS.gene74224:CDS |
| GTTGTTGTTGCTGCTGAGAT+TGG | 0.364305 | 1.2:-86330836 | None:intergenic |
| TTTCTTAGCACGGATAATAA+AGG | 0.365902 | 1.2:-86331279 | None:intergenic |
| GTCTCCTTCTAGGGAGATGT+TGG | 0.372087 | 1.2:+86331370 | MS.gene74224:CDS |
| GGATTCTCATATAGCACAAT+TGG | 0.387143 | 1.2:+86331640 | MS.gene74224:CDS |
| CAACAATGTTTGACAGATGA+AGG | 0.392386 | 1.2:+86332109 | MS.gene74224:CDS |
| TCATCTGAGGATTCATCATC+TGG | 0.393917 | 1.2:-86330782 | None:intergenic |
| AGTGGGGTGTGGATGGTTAC+GGG | 0.394300 | 1.2:+86331411 | MS.gene74224:CDS |
| GCGACAAGCGCAAAGATATT+AGG | 0.394743 | 1.2:+86331093 | MS.gene74224:CDS |
| TCCCTAGAAGGAGACAAAAT+AGG | 0.401100 | 1.2:-86331362 | None:intergenic |
| TAGCATTAAACTTCTTCTTA+GGG | 0.403904 | 1.2:-86331223 | None:intergenic |
| GAGATGATTTACCCTAACTA+TGG | 0.404160 | 1.2:+86331572 | MS.gene74224:CDS |
| TAATAATGTCTTAGAGAATA+GGG | 0.407085 | 1.2:+86331607 | MS.gene74224:CDS |
| GGTCCATGAAGGGTTTGATT+AGG | 0.415891 | 1.2:+86331432 | MS.gene74224:CDS |
| TCTCAAACCTGCTCAAATCT+TGG | 0.417553 | 1.2:-86331553 | None:intergenic |
| TGATTTGAAACCACCTCGCT+TGG | 0.418344 | 1.2:-86331995 | None:intergenic |
| GAGATTAAAAGCAATAAATT+GGG | 0.430395 | 1.2:+86332022 | MS.gene74224:CDS |
| TCTCCCAACATCTCCCTAGA+AGG | 0.431587 | 1.2:-86331374 | None:intergenic |
| AGAGAATAGGGTAGATGATC+AGG | 0.432490 | 1.2:+86331619 | MS.gene74224:CDS |
| ATTATCCGTGCTAAGAAATC+CGG | 0.437129 | 1.2:+86331284 | MS.gene74224:CDS |
| GAAGCAAATGAAAGTATAGA+TGG | 0.442989 | 1.2:+86332217 | MS.gene74224:CDS |
| GGGTCTGATGTTCCTGTCAT+GGG | 0.445316 | 1.2:+86331824 | MS.gene74224:CDS |
| GATGAGGAGGATGGTGGTAG+TGG | 0.447179 | 1.2:+86331479 | MS.gene74224:CDS |
| TTATTTGGAATAGTTTGGTT+GGG | 0.447922 | 1.2:-86331128 | None:intergenic |
| GGAAGAGAATTTGACATTGA+GGG | 0.450626 | 1.2:+86331664 | MS.gene74224:CDS |
| AGGAACATGTGGAGGTAGAA+AGG | 0.450855 | 1.2:+86331522 | MS.gene74224:CDS |
| ATAAAGGAAGTGGTATTCCT+AGG | 0.456425 | 1.2:-86331263 | None:intergenic |
| GGCTGGACCAAGATTTGAGC+AGG | 0.457248 | 1.2:+86331546 | MS.gene74224:CDS |
| AGGAAGAGAATTTGACATTG+AGG | 0.457373 | 1.2:+86331663 | MS.gene74224:CDS |
| ATGAGGAAGTGGTGGAGAAT+GGG | 0.461656 | 1.2:+86331780 | MS.gene74224:CDS |
| AGTGCAAGAATCAGATAGTT+GGG | 0.464802 | 1.2:+86332260 | MS.gene74224:CDS |
| GATGAATCCTCCGCCTCCTC+AGG | 0.467732 | 1.2:+86330803 | MS.gene74224:CDS |
| TCTCCTTCTAGGGAGATGTT+GGG | 0.468734 | 1.2:+86331371 | MS.gene74224:CDS |
| GTGGTATTCCTAGGGGCATA+AGG | 0.469092 | 1.2:-86331254 | None:intergenic |
| ATTATTTGGAATAGTTTGGT+TGG | 0.471669 | 1.2:-86331129 | None:intergenic |
| ATCCACACCCCACTCTTCCT+TGG | 0.472431 | 1.2:-86331402 | None:intergenic |
| TCTTAATGGAGAGGGAGTTA+GGG | 0.473595 | 1.2:+86331696 | MS.gene74224:CDS |
| ACTTTCATTTGCTTCTTCGT+CGG | 0.476598 | 1.2:-86332209 | None:intergenic |
| ATTATTACTTCGTCCCGGCT+TGG | 0.487216 | 1.2:-86331042 | None:intergenic |
| AATGAGGAAGTGGTGGAGAA+TGG | 0.488145 | 1.2:+86331779 | MS.gene74224:CDS |
| GCGCAAAGATATTAGGAGAA+TGG | 0.488843 | 1.2:+86331100 | MS.gene74224:CDS |
| TAACTTAACAGCAACATCAT+TGG | 0.490256 | 1.2:-86331912 | None:intergenic |
| AACGGATAAATCATCATCTC+TGG | 0.492193 | 1.2:-86332299 | None:intergenic |
| TAAAGGAAGTGGTATTCCTA+GGG | 0.494535 | 1.2:-86331262 | None:intergenic |
| GAGTGCAAGAATCAGATAGT+TGG | 0.497730 | 1.2:+86332259 | MS.gene74224:CDS |
| GTGGATATAATAACAAGGTT+TGG | 0.501034 | 1.2:+86330946 | MS.gene74224:CDS |
| GTTTCTTGAGAGGCAAAACC+AGG | 0.501187 | 1.2:+86331739 | MS.gene74224:CDS |
| GGAAGCACCGCGGGAGTCAC+AGG | 0.503477 | 1.2:-86331335 | None:intergenic |
| AGACATGGCCAAGGAAGAGT+GGG | 0.504798 | 1.2:+86331394 | MS.gene74224:CDS |
| CAATAACTGGAAGGGAAAGA+AGG | 0.508608 | 1.2:+86331067 | MS.gene74224:CDS |
| AAGGAAGAGTGGGGTGTGGA+TGG | 0.511058 | 1.2:+86331404 | MS.gene74224:CDS |
| GGGAGTTAGGGGATCTGCGA+AGG | 0.512859 | 1.2:+86331708 | MS.gene74224:CDS |
| CGGGTCATCATCGGAGGAGG+AGG | 0.515742 | 1.2:-86330921 | None:intergenic |
| GCTGTTAAGTTAGACAATGA+TGG | 0.518940 | 1.2:+86331923 | MS.gene74224:CDS |
| TAGGGAGATGTTGGGAGACA+TGG | 0.529357 | 1.2:+86331379 | MS.gene74224:CDS |
| TTGTTCTCAATTCCCATGAC+AGG | 0.534410 | 1.2:-86331836 | None:intergenic |
| AGTCACCACCTCCATAGTTA+GGG | 0.536058 | 1.2:-86331583 | None:intergenic |
| GGATGGTTACGGGTCCATGA+AGG | 0.537436 | 1.2:+86331421 | MS.gene74224:CDS |
| TAATTTCCTTAATTCCAAGC+CGG | 0.537774 | 1.2:+86331028 | MS.gene74224:CDS |
| TTAATTACCTGAGGAGGCGG+AGG | 0.538336 | 1.2:-86330810 | None:intergenic |
| GGGGTCTGATGTTCCTGTCA+TGG | 0.540719 | 1.2:+86331823 | MS.gene74224:CDS |
| TTGTTATTATTACTTCGTCC+CGG | 0.541685 | 1.2:-86331047 | None:intergenic |
| AGCACGGATAATAAAGGAAG+TGG | 0.542401 | 1.2:-86331273 | None:intergenic |
| AATTTCCTTAATTCCAAGCC+GGG | 0.542484 | 1.2:+86331029 | MS.gene74224:CDS |
| AAAAGCAATAAATTGGGAGG+TGG | 0.545853 | 1.2:+86332028 | MS.gene74224:CDS |
| TAACATCTTCAACCACAGCC+TGG | 0.547796 | 1.2:-86331757 | None:intergenic |
| GATGGTTACGGGTCCATGAA+GGG | 0.550466 | 1.2:+86331422 | MS.gene74224:CDS |
| ACCGCGGGAGTCACAGGACA+AGG | 0.556762 | 1.2:-86331329 | None:intergenic |
| TATCCACCACGGGTCATCAT+CGG | 0.556989 | 1.2:-86330930 | None:intergenic |
| TTCTCATATAGCACAATTGG+AGG | 0.557751 | 1.2:+86331643 | MS.gene74224:CDS |
| CCACGGGTCATCATCGGAGG+AGG | 0.558013 | 1.2:-86330924 | None:intergenic |
| GAAGGAGACAAAATAGGTGT+AGG | 0.563617 | 1.2:-86331356 | None:intergenic |
| TGAGATGGTTGATTCAATGC+TGG | 0.564051 | 1.2:+86331862 | MS.gene74224:CDS |
| GATTTGCTCCTTATGCCCCT+AGG | 0.564214 | 1.2:+86331246 | MS.gene74224:CDS |
| AATAATAACAATAACTGGAA+GGG | 0.564282 | 1.2:+86331059 | MS.gene74224:CDS |
| TTGTTAATTACCTGAGGAGG+CGG | 0.568063 | 1.2:-86330813 | None:intergenic |
| ATGAGGAGGATGGTGGTAGT+GGG | 0.569684 | 1.2:+86331480 | MS.gene74224:CDS |
| TGAGAGGCAAAACCAGGCTG+TGG | 0.571139 | 1.2:+86331745 | MS.gene74224:CDS |
| GAGACATGGCCAAGGAAGAG+TGG | 0.574369 | 1.2:+86331393 | MS.gene74224:CDS |
| GGCCAAGGAAGAGTGGGGTG+TGG | 0.578600 | 1.2:+86331400 | MS.gene74224:CDS |
| CTTGTTATTATATCCACCAC+GGG | 0.580308 | 1.2:-86330940 | None:intergenic |
| GGAGGATGCTGTTTCTTGAG+AGG | 0.580553 | 1.2:+86331729 | MS.gene74224:CDS |
| TGTGGAGGTAGAAAGGAGGC+TGG | 0.581168 | 1.2:+86331529 | MS.gene74224:CDS |
| ATTTACCCTAACTATGGAGG+TGG | 0.582123 | 1.2:+86331578 | MS.gene74224:CDS |
| TGAAGATGTTAATGAGGAAG+TGG | 0.582378 | 1.2:+86331769 | MS.gene74224:CDS |
| TCATCATCTTCATCTGCGGT+TGG | 0.583649 | 1.2:-86330878 | None:intergenic |
| GGTCTGATAATGAAAGTGAA+GGG | 0.586263 | 1.2:+86331801 | MS.gene74224:CDS |
| GTTGATTCAATGCTGGAAAG+TGG | 0.587761 | 1.2:+86331869 | MS.gene74224:CDS |
| TAATAATAACAATAACTGGA+AGG | 0.588600 | 1.2:+86331058 | MS.gene74224:CDS |
| TGGTTGTTAATTACCTGAGG+AGG | 0.589919 | 1.2:-86330816 | None:intergenic |
| CTTAATGGAGAGGGAGTTAG+GGG | 0.592459 | 1.2:+86331697 | MS.gene74224:CDS |
| ATTTATCCGTTGCTCAGTAG+CGG | 0.594666 | 1.2:+86332311 | MS.gene74224:CDS |
| GATTGTAACTCGTGAAGAGT+AGG | 0.597765 | 1.2:-86331170 | None:intergenic |
| GGGTCTGATAATGAAAGTGA+AGG | 0.598925 | 1.2:+86331800 | MS.gene74224:CDS |
| AGTTAGGGGATCTGCGAAGG+AGG | 0.600321 | 1.2:+86331711 | MS.gene74224:CDS |
| AGATGTTAATGAGGAAGTGG+TGG | 0.601396 | 1.2:+86331772 | MS.gene74224:CDS |
| GAGTGATGTGGAGGAACATG+TGG | 0.602651 | 1.2:+86331511 | MS.gene74224:CDS |
| CTTTATGTTTGATGATGTGA+AGG | 0.604414 | 1.2:+86332051 | MS.gene74224:CDS |
| GGCGGAGGATTCATCATCTG+AGG | 0.607610 | 1.2:-86330795 | None:intergenic |
| CCTCCGATGATGACCCGTGG+TGG | 0.609404 | 1.2:+86330927 | MS.gene74224:CDS |
| TGTTCATGATGATGAAGATG+AGG | 0.609691 | 1.2:+86331463 | MS.gene74224:CDS |
| ACTCGTGAAGAGTAGGTGGT+TGG | 0.610555 | 1.2:-86331163 | None:intergenic |
| AATTGAGAACAATGTTGAGA+TGG | 0.615362 | 1.2:+86331847 | MS.gene74224:CDS |
| GATTGGTTGTTAATTACCTG+AGG | 0.617500 | 1.2:-86330819 | None:intergenic |
| ATAGGTGTAGGAAGCACCGC+GGG | 0.617806 | 1.2:-86331344 | None:intergenic |
| CACGAGCGATGCAATACCAC+CGG | 0.619944 | 1.2:-86331303 | None:intergenic |
| TGAGTCATCATCTTCATCTG+CGG | 0.622247 | 1.2:-86330882 | None:intergenic |
| ATTAAAAGCAATAAATTGGG+AGG | 0.623697 | 1.2:+86332025 | MS.gene74224:CDS |
| GGAAGAGTCTGTTCCAAGCG+AGG | 0.624493 | 1.2:+86331982 | MS.gene74224:CDS |
| TGGGTCGAGTGAGAGTGATG+TGG | 0.627431 | 1.2:+86331499 | MS.gene74224:CDS |
| AGATGGCTTAGTGAGTGAGA+CGG | 0.627723 | 1.2:+86332234 | MS.gene74224:CDS |
| CCGTGGTGGATATAATAACA+AGG | 0.629257 | 1.2:+86330941 | MS.gene74224:CDS |
| GTCTGATAATGAAAGTGAAG+GGG | 0.635873 | 1.2:+86331802 | MS.gene74224:CDS |
| TGTAACTCGTGAAGAGTAGG+TGG | 0.636079 | 1.2:-86331167 | None:intergenic |
| TGATGATGTGAAGGAAGAGA+AGG | 0.637450 | 1.2:+86332060 | MS.gene74224:CDS |
| ATCCGTGCTAAGAAATCCGG+TGG | 0.644195 | 1.2:+86331287 | MS.gene74224:CDS |
| CCTCCTCCGATGATGACCCG+TGG | 0.644215 | 1.2:+86330924 | MS.gene74224:CDS |
| TACCACCGGATTTCTTAGCA+CGG | 0.644469 | 1.2:-86331289 | None:intergenic |
| ATGATTTACCCTAACTATGG+AGG | 0.645374 | 1.2:+86331575 | MS.gene74224:CDS |
| GATGATGAAGATGAGGAGGA+TGG | 0.647257 | 1.2:+86331470 | MS.gene74224:CDS |
| TTGATTCAATGCTGGAAAGT+GGG | 0.647613 | 1.2:+86331870 | MS.gene74224:CDS |
| GATGAAGATGAGGAGGATGG+TGG | 0.648811 | 1.2:+86331473 | MS.gene74224:CDS |
| CCACCACGGGTCATCATCGG+AGG | 0.650472 | 1.2:-86330927 | None:intergenic |
| AATTTCATGTTAGGATCCAG+AGG | 0.650747 | 1.2:-86330984 | None:intergenic |
| TGATGTGGAGGAACATGTGG+AGG | 0.651253 | 1.2:+86331514 | MS.gene74224:CDS |
| CGGCTTCCGCTACTGAGCAA+CGG | 0.652542 | 1.2:-86332317 | None:intergenic |
| CCTTGTTATTATATCCACCA+CGG | 0.653785 | 1.2:-86330941 | None:intergenic |
| TGTGGTTGAAGATGTTAATG+AGG | 0.653979 | 1.2:+86331763 | MS.gene74224:CDS |
| CTTGTGAATCGAAAAGAGAG+TGG | 0.654418 | 1.2:+86332151 | MS.gene74224:CDS |
| GATGGAGTATCAGAAGCTGA+AGG | 0.655345 | 1.2:+86331941 | MS.gene74224:CDS |
| AGAGTCTGTTCCAAGCGAGG+TGG | 0.657368 | 1.2:+86331985 | MS.gene74224:CDS |
| TCTGATAATGAAAGTGAAGG+GGG | 0.659594 | 1.2:+86331803 | MS.gene74224:CDS |
| TGGGAGAAATGAAAACATTG+AGG | 0.659944 | 1.2:+86331889 | MS.gene74224:CDS |
| ACCTTGTCCTGTGACTCCCG+CGG | 0.660411 | 1.2:+86331328 | MS.gene74224:CDS |
| TCATGATGATGAAGATGAGG+AGG | 0.669532 | 1.2:+86331466 | MS.gene74224:CDS |
| AACATGTGGAGGTAGAAAGG+AGG | 0.682787 | 1.2:+86331525 | MS.gene74224:CDS |
| AAAGGAAGTGGTATTCCTAG+GGG | 0.695257 | 1.2:-86331261 | None:intergenic |
| GTCGAGTGAGAGTGATGTGG+AGG | 0.696796 | 1.2:+86331502 | MS.gene74224:CDS |
| GATGTTGGGAGACATGGCCA+AGG | 0.712349 | 1.2:+86331385 | MS.gene74224:CDS |
| CTGATAATGAAAGTGAAGGG+GGG | 0.728770 | 1.2:+86331804 | MS.gene74224:CDS |
| AATAGGTGTAGGAAGCACCG+CGG | 0.741680 | 1.2:-86331345 | None:intergenic |
| GACATGGCCAAGGAAGAGTG+GGG | 0.742081 | 1.2:+86331395 | MS.gene74224:CDS |
| GGTTGGTGAGAGAGTAACTG+AGG | 0.774421 | 1.2:-86330861 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATAACAATAACTGGAA+GGG | + | chr1.2:86331059-86331078 | MS.gene74224:CDS | 20.0% |
| !! | ACTATTCCAAATAATATTCT+TGG | + | chr1.2:86331137-86331156 | MS.gene74224:CDS | 20.0% |
| !! | ATAATAATGTCTTAGAGAAT+AGG | + | chr1.2:86331606-86331625 | MS.gene74224:CDS | 20.0% |
| !! | GAAGTAATAATAACAATAAC+TGG | + | chr1.2:86331054-86331073 | MS.gene74224:CDS | 20.0% |
| !! | GAGATTAAAAGCAATAAATT+GGG | + | chr1.2:86332022-86332041 | MS.gene74224:CDS | 20.0% |
| !! | TAATAATAACAATAACTGGA+AGG | + | chr1.2:86331058-86331077 | MS.gene74224:CDS | 20.0% |
| !! | TAATAATGTCTTAGAGAATA+GGG | + | chr1.2:86331607-86331626 | MS.gene74224:CDS | 20.0% |
| !! | TGAGATTAAAAGCAATAAAT+TGG | + | chr1.2:86332021-86332040 | MS.gene74224:CDS | 20.0% |
| !!! | GAATATTATTTGGAATAGTT+TGG | - | chr1.2:86331136-86331155 | None:intergenic | 20.0% |
| ! | AGGAAATTAGGTTTGATATT+AGG | - | chr1.2:86331017-86331036 | None:intergenic | 25.0% |
| ! | ATTAAAAGCAATAAATTGGG+AGG | + | chr1.2:86332025-86332044 | MS.gene74224:CDS | 25.0% |
| ! | GGAAATTAGGTTTGATATTA+GGG | - | chr1.2:86331016-86331035 | None:intergenic | 25.0% |
| ! | TAGCATTAAACTTCTTCTTA+GGG | - | chr1.2:86331226-86331245 | None:intergenic | 25.0% |
| ! | TGGTAACCAAGAATATTATT+TGG | - | chr1.2:86331146-86331165 | None:intergenic | 25.0% |
| !! | ATTATTTGGAATAGTTTGGT+TGG | - | chr1.2:86331132-86331151 | None:intergenic | 25.0% |
| !! | TTATTTGGAATAGTTTGGTT+GGG | - | chr1.2:86331131-86331150 | None:intergenic | 25.0% |
| AATTGAGAACAATGTTGAGA+TGG | + | chr1.2:86331847-86331866 | MS.gene74224:CDS | 30.0% | |
| CTAGCATTAAACTTCTTCTT+AGG | - | chr1.2:86331227-86331246 | None:intergenic | 30.0% | |
| GTGGATATAATAACAAGGTT+TGG | + | chr1.2:86330946-86330965 | MS.gene74224:CDS | 30.0% | |
| TAACTTAACAGCAACATCAT+TGG | - | chr1.2:86331915-86331934 | None:intergenic | 30.0% | |
| TAATTTCCTTAATTCCAAGC+CGG | + | chr1.2:86331028-86331047 | MS.gene74224:CDS | 30.0% | |
| TTTCTTAGCACGGATAATAA+AGG | - | chr1.2:86331282-86331301 | None:intergenic | 30.0% | |
| ! | GAAGCAAATGAAAGTATAGA+TGG | + | chr1.2:86332217-86332236 | MS.gene74224:CDS | 30.0% |
| ! | TTGTTATTATTACTTCGTCC+CGG | - | chr1.2:86331050-86331069 | None:intergenic | 30.0% |
| !! | CTTTATGTTTGATGATGTGA+AGG | + | chr1.2:86332051-86332070 | MS.gene74224:CDS | 30.0% |
| AAAAGCAATAAATTGGGAGG+TGG | + | chr1.2:86332028-86332047 | MS.gene74224:CDS | 35.0% | |
| AACGGATAAATCATCATCTC+TGG | - | chr1.2:86332302-86332321 | None:intergenic | 35.0% | |
| AATTTCATGTTAGGATCCAG+AGG | - | chr1.2:86330987-86331006 | None:intergenic | 35.0% | |
| AATTTCCTTAATTCCAAGCC+GGG | + | chr1.2:86331029-86331048 | MS.gene74224:CDS | 35.0% | |
| ACTTTCATTTGCTTCTTCGT+CGG | - | chr1.2:86332212-86332231 | None:intergenic | 35.0% | |
| AGGAAGAGAATTTGACATTG+AGG | + | chr1.2:86331663-86331682 | MS.gene74224:CDS | 35.0% | |
| AGTGCAAGAATCAGATAGTT+GGG | + | chr1.2:86332260-86332279 | MS.gene74224:CDS | 35.0% | |
| ATAAAGGAAGTGGTATTCCT+AGG | - | chr1.2:86331266-86331285 | None:intergenic | 35.0% | |
| ATGATTTACCCTAACTATGG+AGG | + | chr1.2:86331575-86331594 | MS.gene74224:CDS | 35.0% | |
| ATTATCCGTGCTAAGAAATC+CGG | + | chr1.2:86331284-86331303 | MS.gene74224:CDS | 35.0% | |
| CAACAATGTTTGACAGATGA+AGG | + | chr1.2:86332109-86332128 | MS.gene74224:CDS | 35.0% | |
| GAGATGATTTACCCTAACTA+TGG | + | chr1.2:86331572-86331591 | MS.gene74224:CDS | 35.0% | |
| GCTGTTAAGTTAGACAATGA+TGG | + | chr1.2:86331923-86331942 | MS.gene74224:CDS | 35.0% | |
| GGAAGAGAATTTGACATTGA+GGG | + | chr1.2:86331664-86331683 | MS.gene74224:CDS | 35.0% | |
| GGATTCTCATATAGCACAAT+TGG | + | chr1.2:86331640-86331659 | MS.gene74224:CDS | 35.0% | |
| GGCTTGGAATTAAGGAAATT+AGG | - | chr1.2:86331029-86331048 | None:intergenic | 35.0% | |
| TAAAGGAAGTGGTATTCCTA+GGG | - | chr1.2:86331265-86331284 | None:intergenic | 35.0% | |
| TGAAGATGTTAATGAGGAAG+TGG | + | chr1.2:86331769-86331788 | MS.gene74224:CDS | 35.0% | |
| TGGGAGAAATGAAAACATTG+AGG | + | chr1.2:86331889-86331908 | MS.gene74224:CDS | 35.0% | |
| TGTGGTTGAAGATGTTAATG+AGG | + | chr1.2:86331763-86331782 | MS.gene74224:CDS | 35.0% | |
| TTCTCATATAGCACAATTGG+AGG | + | chr1.2:86331643-86331662 | MS.gene74224:CDS | 35.0% | |
| TTGATTCAATGCTGGAAAGT+GGG | + | chr1.2:86331870-86331889 | MS.gene74224:CDS | 35.0% | |
| ! | ACCTATTTTGTCTCCTTCTA+GGG | + | chr1.2:86331361-86331380 | MS.gene74224:CDS | 35.0% |
| ! | ATTCACAAGATCGTTTTCCT+TGG | - | chr1.2:86332140-86332159 | None:intergenic | 35.0% |
| ! | GATTGGTTGTTAATTACCTG+AGG | - | chr1.2:86330822-86330841 | None:intergenic | 35.0% |
| ! | GGTCTGATAATGAAAGTGAA+GGG | + | chr1.2:86331801-86331820 | MS.gene74224:CDS | 35.0% |
| ! | GTCTGATAATGAAAGTGAAG+GGG | + | chr1.2:86331802-86331821 | MS.gene74224:CDS | 35.0% |
| ! | TCTGATAATGAAAGTGAAGG+GGG | + | chr1.2:86331803-86331822 | MS.gene74224:CDS | 35.0% |
| ! | TGTTCATGATGATGAAGATG+AGG | + | chr1.2:86331463-86331482 | MS.gene74224:CDS | 35.0% |
| !! | CCTTGTTATTATATCCACCA+CGG | - | chr1.2:86330944-86330963 | None:intergenic | 35.0% |
| !! | CTTGTTATTATATCCACCAC+GGG | - | chr1.2:86330943-86330962 | None:intergenic | 35.0% |
| !! | GGGTTCTGAAATTTCATGTT+AGG | - | chr1.2:86330996-86331015 | None:intergenic | 35.0% |
| !!! | AGGTGTCGATGATGTTTTTA+TGG | + | chr1.2:86331961-86331980 | MS.gene74224:CDS | 35.0% |
| AAAGGAAGTGGTATTCCTAG+GGG | - | chr1.2:86331264-86331283 | None:intergenic | 40.0% | |
| AGAGAATAGGGTAGATGATC+AGG | + | chr1.2:86331619-86331638 | MS.gene74224:CDS | 40.0% | |
| AGATGTTAATGAGGAAGTGG+TGG | + | chr1.2:86331772-86331791 | MS.gene74224:CDS | 40.0% | |
| AGCACGGATAATAAAGGAAG+TGG | - | chr1.2:86331276-86331295 | None:intergenic | 40.0% | |
| ATTTACCCTAACTATGGAGG+TGG | + | chr1.2:86331578-86331597 | MS.gene74224:CDS | 40.0% | |
| CAATAACTGGAAGGGAAAGA+AGG | + | chr1.2:86331067-86331086 | MS.gene74224:CDS | 40.0% | |
| CTTGTGAATCGAAAAGAGAG+TGG | + | chr1.2:86332151-86332170 | MS.gene74224:CDS | 40.0% | |
| GAAGGAGACAAAATAGGTGT+AGG | - | chr1.2:86331359-86331378 | None:intergenic | 40.0% | |
| GAGTGCAAGAATCAGATAGT+TGG | + | chr1.2:86332259-86332278 | MS.gene74224:CDS | 40.0% | |
| GATTGTAACTCGTGAAGAGT+AGG | - | chr1.2:86331173-86331192 | None:intergenic | 40.0% | |
| GCGCAAAGATATTAGGAGAA+TGG | + | chr1.2:86331100-86331119 | MS.gene74224:CDS | 40.0% | |
| TCATCTGAGGATTCATCATC+TGG | - | chr1.2:86330785-86330804 | None:intergenic | 40.0% | |
| TCCCTAGAAGGAGACAAAAT+AGG | - | chr1.2:86331365-86331384 | None:intergenic | 40.0% | |
| TCTCAAACCTGCTCAAATCT+TGG | - | chr1.2:86331556-86331575 | None:intergenic | 40.0% | |
| TCTTAATGGAGAGGGAGTTA+GGG | + | chr1.2:86331696-86331715 | MS.gene74224:CDS | 40.0% | |
| TGAGTCATCATCTTCATCTG+CGG | - | chr1.2:86330885-86330904 | None:intergenic | 40.0% | |
| TGGTTGTTAATTACCTGAGG+AGG | - | chr1.2:86330819-86330838 | None:intergenic | 40.0% | |
| TTCTTAATGGAGAGGGAGTT+AGG | + | chr1.2:86331695-86331714 | MS.gene74224:CDS | 40.0% | |
| TTGTTAATTACCTGAGGAGG+CGG | - | chr1.2:86330816-86330835 | None:intergenic | 40.0% | |
| TTGTTCTCAATTCCCATGAC+AGG | - | chr1.2:86331839-86331858 | None:intergenic | 40.0% | |
| ! | AGCGTCTTTTCTTAATGGAG+AGG | + | chr1.2:86331687-86331706 | MS.gene74224:CDS | 40.0% |
| ! | CACCTATTTTGTCTCCTTCT+AGG | + | chr1.2:86331360-86331379 | MS.gene74224:CDS | 40.0% |
| ! | CTGATAATGAAAGTGAAGGG+GGG | + | chr1.2:86331804-86331823 | MS.gene74224:CDS | 40.0% |
| ! | GCGTCTTTTCTTAATGGAGA+GGG | + | chr1.2:86331688-86331707 | MS.gene74224:CDS | 40.0% |
| ! | GGGTCTGATAATGAAAGTGA+AGG | + | chr1.2:86331800-86331819 | MS.gene74224:CDS | 40.0% |
| ! | GTTGATTCAATGCTGGAAAG+TGG | + | chr1.2:86331869-86331888 | MS.gene74224:CDS | 40.0% |
| ! | TCATGATGATGAAGATGAGG+AGG | + | chr1.2:86331466-86331485 | MS.gene74224:CDS | 40.0% |
| ! | TGAGATGGTTGATTCAATGC+TGG | + | chr1.2:86331862-86331881 | MS.gene74224:CDS | 40.0% |
| ! | TGATGATGTGAAGGAAGAGA+AGG | + | chr1.2:86332060-86332079 | MS.gene74224:CDS | 40.0% |
| !! | CCGTGGTGGATATAATAACA+AGG | + | chr1.2:86330941-86330960 | MS.gene74224:CDS | 40.0% |
| AACATGTGGAGGTAGAAAGG+AGG | + | chr1.2:86331525-86331544 | MS.gene74224:CDS | 45.0% | |
| AAGCGAGGTGGTTTCAAATC+AGG | + | chr1.2:86331997-86332016 | MS.gene74224:CDS | 45.0% | |
| AGATGGCTTAGTGAGTGAGA+CGG | + | chr1.2:86332234-86332253 | MS.gene74224:CDS | 45.0% | |
| AGGAACATGTGGAGGTAGAA+AGG | + | chr1.2:86331522-86331541 | MS.gene74224:CDS | 45.0% | |
| AGTCACCACCTCCATAGTTA+GGG | - | chr1.2:86331586-86331605 | None:intergenic | 45.0% | |
| ATTATTACTTCGTCCCGGCT+TGG | - | chr1.2:86331045-86331064 | None:intergenic | 45.0% | |
| CAGCCTAATCAAACCCTTCA+TGG | - | chr1.2:86331438-86331457 | None:intergenic | 45.0% | |
| CTTAATGGAGAGGGAGTTAG+GGG | + | chr1.2:86331697-86331716 | MS.gene74224:CDS | 45.0% | |
| GATGATGAAGATGAGGAGGA+TGG | + | chr1.2:86331470-86331489 | MS.gene74224:CDS | 45.0% | |
| GCGACAAGCGCAAAGATATT+AGG | + | chr1.2:86331093-86331112 | MS.gene74224:CDS | 45.0% | |
| GGTCCATGAAGGGTTTGATT+AGG | + | chr1.2:86331432-86331451 | MS.gene74224:CDS | 45.0% | |
| GTTTCTTGAGAGGCAAAACC+AGG | + | chr1.2:86331739-86331758 | MS.gene74224:CDS | 45.0% | |
| TAACATCTTCAACCACAGCC+TGG | - | chr1.2:86331760-86331779 | None:intergenic | 45.0% | |
| TACCACCGGATTTCTTAGCA+CGG | - | chr1.2:86331292-86331311 | None:intergenic | 45.0% | |
| TAGTCACCACCTCCATAGTT+AGG | - | chr1.2:86331587-86331606 | None:intergenic | 45.0% | |
| TCATCATCTTCATCTGCGGT+TGG | - | chr1.2:86330881-86330900 | None:intergenic | 45.0% | |
| TGTAACTCGTGAAGAGTAGG+TGG | - | chr1.2:86331170-86331189 | None:intergenic | 45.0% | |
| ! | AATGAGGAAGTGGTGGAGAA+TGG | + | chr1.2:86331779-86331798 | MS.gene74224:CDS | 45.0% |
| ! | ATGAGGAAGTGGTGGAGAAT+GGG | + | chr1.2:86331780-86331799 | MS.gene74224:CDS | 45.0% |
| ! | GACAGATGAAGGTTTTGCCA+AGG | + | chr1.2:86332120-86332139 | MS.gene74224:CDS | 45.0% |
| ! | GATGGAGTATCAGAAGCTGA+AGG | + | chr1.2:86331941-86331960 | MS.gene74224:CDS | 45.0% |
| ! | GTTGTTGTTGCTGCTGAGAT+TGG | - | chr1.2:86330839-86330858 | None:intergenic | 45.0% |
| ! | TCTCCTTCTAGGGAGATGTT+GGG | + | chr1.2:86331371-86331390 | MS.gene74224:CDS | 45.0% |
| ! | TGATTTGAAACCACCTCGCT+TGG | - | chr1.2:86331998-86332017 | None:intergenic | 45.0% |
| !!! | GAGGGAGCGTCTTTTCTTAA+TGG | + | chr1.2:86331682-86331701 | MS.gene74224:CDS | 45.0% |
| ACTCGTGAAGAGTAGGTGGT+TGG | - | chr1.2:86331166-86331185 | None:intergenic | 50.0% | |
| AGACATGGCCAAGGAAGAGT+GGG | + | chr1.2:86331394-86331413 | MS.gene74224:CDS | 50.0% | |
| ATCCGTGCTAAGAAATCCGG+TGG | + | chr1.2:86331287-86331306 | MS.gene74224:CDS | 50.0% | |
| GAGTGATGTGGAGGAACATG+TGG | + | chr1.2:86331511-86331530 | MS.gene74224:CDS | 50.0% | |
| GATGAAGATGAGGAGGATGG+TGG | + | chr1.2:86331473-86331492 | MS.gene74224:CDS | 50.0% | |
| GATGGTTACGGGTCCATGAA+GGG | + | chr1.2:86331422-86331441 | MS.gene74224:CDS | 50.0% | |
| GGGTCTGATGTTCCTGTCAT+GGG | + | chr1.2:86331824-86331843 | MS.gene74224:CDS | 50.0% | |
| TAGGGAGATGTTGGGAGACA+TGG | + | chr1.2:86331379-86331398 | MS.gene74224:CDS | 50.0% | |
| TATCCACCACGGGTCATCAT+CGG | - | chr1.2:86330933-86330952 | None:intergenic | 50.0% | |
| TCTCCCAACATCTCCCTAGA+AGG | - | chr1.2:86331377-86331396 | None:intergenic | 50.0% | |
| TGATGTGGAGGAACATGTGG+AGG | + | chr1.2:86331514-86331533 | MS.gene74224:CDS | 50.0% | |
| TTAATTACCTGAGGAGGCGG+AGG | - | chr1.2:86330813-86330832 | None:intergenic | 50.0% | |
| ! | ATGAGGAGGATGGTGGTAGT+GGG | + | chr1.2:86331480-86331499 | MS.gene74224:CDS | 50.0% |
| ! | GATTTGCTCCTTATGCCCCT+AGG | + | chr1.2:86331246-86331265 | MS.gene74224:CDS | 50.0% |
| ! | GTCTCCTTCTAGGGAGATGT+TGG | + | chr1.2:86331370-86331389 | MS.gene74224:CDS | 50.0% |
| ! | GTGGTATTCCTAGGGGCATA+AGG | - | chr1.2:86331257-86331276 | None:intergenic | 50.0% |
| !! | AATAGGTGTAGGAAGCACCG+CGG | - | chr1.2:86331348-86331367 | None:intergenic | 50.0% |
| !! | GGAGGATGCTGTTTCTTGAG+AGG | + | chr1.2:86331729-86331748 | MS.gene74224:CDS | 50.0% |
| !! | GGTTGGTGAGAGAGTAACTG+AGG | - | chr1.2:86330864-86330883 | None:intergenic | 50.0% |
| !! | TTCGTCCCGGCTTGGAATTA+AGG | - | chr1.2:86331037-86331056 | None:intergenic | 50.0% |
| AAGGAAGAGTGGGGTGTGGA+TGG | + | chr1.2:86331404-86331423 | MS.gene74224:CDS | 55.0% | |
| AGAGTCTGTTCCAAGCGAGG+TGG | + | chr1.2:86331985-86332004 | MS.gene74224:CDS | 55.0% | |
| AGTGGGGTGTGGATGGTTAC+GGG | + | chr1.2:86331411-86331430 | MS.gene74224:CDS | 55.0% | |
| AGTTAGGGGATCTGCGAAGG+AGG | + | chr1.2:86331711-86331730 | MS.gene74224:CDS | 55.0% | |
| ATCCACACCCCACTCTTCCT+TGG | - | chr1.2:86331405-86331424 | None:intergenic | 55.0% | |
| CACGAGCGATGCAATACCAC+CGG | - | chr1.2:86331306-86331325 | None:intergenic | 55.0% | |
| GACATGGCCAAGGAAGAGTG+GGG | + | chr1.2:86331395-86331414 | MS.gene74224:CDS | 55.0% | |
| GAGACATGGCCAAGGAAGAG+TGG | + | chr1.2:86331393-86331412 | MS.gene74224:CDS | 55.0% | |
| GAGTGGGGTGTGGATGGTTA+CGG | + | chr1.2:86331410-86331429 | MS.gene74224:CDS | 55.0% | |
| GATGTTGGGAGACATGGCCA+AGG | + | chr1.2:86331385-86331404 | MS.gene74224:CDS | 55.0% | |
| GGAAGAGTCTGTTCCAAGCG+AGG | + | chr1.2:86331982-86332001 | MS.gene74224:CDS | 55.0% | |
| GGATGGTTACGGGTCCATGA+AGG | + | chr1.2:86331421-86331440 | MS.gene74224:CDS | 55.0% | |
| GGCGGAGGATTCATCATCTG+AGG | - | chr1.2:86330798-86330817 | None:intergenic | 55.0% | |
| GGCTGGACCAAGATTTGAGC+AGG | + | chr1.2:86331546-86331565 | MS.gene74224:CDS | 55.0% | |
| GGGGTCTGATGTTCCTGTCA+TGG | + | chr1.2:86331823-86331842 | MS.gene74224:CDS | 55.0% | |
| GTCGAGTGAGAGTGATGTGG+AGG | + | chr1.2:86331502-86331521 | MS.gene74224:CDS | 55.0% | |
| GTCTCAACAGCAGCTTCCTC+TGG | + | chr1.2:86330968-86330987 | MS.gene74224:CDS | 55.0% | |
| TGAGAGGCAAAACCAGGCTG+TGG | + | chr1.2:86331745-86331764 | MS.gene74224:CDS | 55.0% | |
| TGGGTCGAGTGAGAGTGATG+TGG | + | chr1.2:86331499-86331518 | MS.gene74224:CDS | 55.0% | |
| TGTGGAGGTAGAAAGGAGGC+TGG | + | chr1.2:86331529-86331548 | MS.gene74224:CDS | 55.0% | |
| ! | GATGAGGAGGATGGTGGTAG+TGG | + | chr1.2:86331479-86331498 | MS.gene74224:CDS | 55.0% |
| !! | ATAGGTGTAGGAAGCACCGC+GGG | - | chr1.2:86331347-86331366 | None:intergenic | 55.0% |
| ACCTTGTCCTGTGACTCCCG+CGG | + | chr1.2:86331328-86331347 | MS.gene74224:CDS | 60.0% | |
| GATGAATCCTCCGCCTCCTC+AGG | + | chr1.2:86330803-86330822 | MS.gene74224:CDS | 60.0% | |
| GGGAGTTAGGGGATCTGCGA+AGG | + | chr1.2:86331708-86331727 | MS.gene74224:CDS | 60.0% | |
| ACCGCGGGAGTCACAGGACA+AGG | - | chr1.2:86331332-86331351 | None:intergenic | 65.0% | |
| CCACCACGGGTCATCATCGG+AGG | - | chr1.2:86330930-86330949 | None:intergenic | 65.0% | |
| CCACGGGTCATCATCGGAGG+AGG | - | chr1.2:86330927-86330946 | None:intergenic | 65.0% | |
| CCTCCGATGATGACCCGTGG+TGG | + | chr1.2:86330927-86330946 | MS.gene74224:CDS | 65.0% | |
| CCTCCTCCGATGATGACCCG+TGG | + | chr1.2:86330924-86330943 | MS.gene74224:CDS | 65.0% | |
| CGGGTCATCATCGGAGGAGG+AGG | - | chr1.2:86330924-86330943 | None:intergenic | 65.0% | |
| GGCCAAGGAAGAGTGGGGTG+TGG | + | chr1.2:86331400-86331419 | MS.gene74224:CDS | 65.0% | |
| !! | GGAAGCACCGCGGGAGTCAC+AGG | - | chr1.2:86331338-86331357 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 86330747 | 86332330 | 86330747 | ID=MS.gene74224 |
| chr1.2 | mRNA | 86330747 | 86332330 | 86330747 | ID=MS.gene74224.t1;Parent=MS.gene74224 |
| chr1.2 | exon | 86330747 | 86332330 | 86330747 | ID=MS.gene74224.t1.exon1;Parent=MS.gene74224.t1 |
| chr1.2 | CDS | 86330747 | 86332330 | 86330747 | ID=cds.MS.gene74224.t1;Parent=MS.gene74224.t1 |
| Gene Sequence |
| Protein sequence |
