Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74259.t1 | XP_013470514.1 | 97.7 | 1032 | 19 | 3 | 1 | 1032 | 1 | 1027 | 0.00E+00 | 1853.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74259.t1 | F4IRR2 | 70.8 | 1033 | 289 | 4 | 5 | 1030 | 8 | 1034 | 0.0e+00 | 1399.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74259.t1 | A0A072VRZ0 | 97.7 | 1032 | 19 | 3 | 1 | 1032 | 1 | 1027 | 0.0e+00 | 1853.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049243 | MS.gene74259 | 0.826358 | 2.83E-54 | -1.69E-46 |
| MS.gene050894 | MS.gene74259 | 0.814278 | 1.67E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74259.t1 | MTR_1g116957 | 97.771 | 1032 | 18 | 3 | 1 | 1032 | 1 | 1027 | 0.0 | 2067 |
| MS.gene74259.t1 | MTR_7g021500 | 79.614 | 1035 | 196 | 5 | 4 | 1032 | 6 | 1031 | 0.0 | 1674 |
| MS.gene74259.t1 | MTR_7g021500 | 79.903 | 1035 | 194 | 5 | 4 | 1032 | 6 | 1032 | 0.0 | 1669 |
| MS.gene74259.t1 | MTR_7g107210 | 70.229 | 131 | 21 | 2 | 861 | 991 | 62 | 174 | 3.26e-35 | 132 |
| MS.gene74259.t1 | MTR_7g107210 | 88.235 | 51 | 4 | 1 | 732 | 780 | 1 | 51 | 3.95e-22 | 95.1 |
| MS.gene74259.t1 | MTR_7g107220 | 85.714 | 49 | 7 | 0 | 605 | 653 | 12 | 60 | 1.87e-20 | 86.3 |
| MS.gene74259.t1 | MTR_4g123690 | 22.864 | 433 | 267 | 15 | 1 | 394 | 1 | 405 | 5.13e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74259.t1 | AT2G31660 | 70.270 | 1036 | 289 | 6 | 5 | 1030 | 8 | 1034 | 0.0 | 1479 |
| MS.gene74259.t1 | AT3G59020 | 69.826 | 1034 | 291 | 6 | 4 | 1030 | 7 | 1026 | 0.0 | 1429 |
| MS.gene74259.t1 | AT3G59020 | 69.662 | 1035 | 292 | 6 | 4 | 1030 | 7 | 1027 | 0.0 | 1422 |
Find 221 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATATAAATTACCAAATTT+TGG | 0.144050 | 1.1:-82283695 | None:intergenic |
| TGTTAACATGCTACGCATTA+TGG | 0.175977 | 1.1:-82283975 | None:intergenic |
| GCAGTCCTGTTGGCCATCTT+AGG | 0.178159 | 1.1:+82282117 | MS.gene74259:CDS |
| GCATTATGCGGGGAAGATTT+TGG | 0.199329 | 1.1:+82281246 | MS.gene74259:CDS |
| ACGCTCAAGTTCAGATTTAT+AGG | 0.205041 | 1.1:-82282063 | None:intergenic |
| CATCAGAAATCTTCAATCTT+TGG | 0.212439 | 1.1:+82285612 | MS.gene74259:CDS |
| CAACAAAGGCTGCTGCATTT+TGG | 0.228833 | 1.1:+82283804 | MS.gene74259:intron |
| TCTTGACTTCTTGCAGCATT+TGG | 0.257051 | 1.1:-82285637 | None:intergenic |
| AGTTTATTCTGCAGATATTA+TGG | 0.266161 | 1.1:+82284696 | MS.gene74259:intron |
| CTTCTCCCTTCGCTCCTTGA+TGG | 0.266476 | 1.1:+82283486 | MS.gene74259:CDS |
| GATGGAGCTCTTCTTGCTAT+TGG | 0.266710 | 1.1:+82282008 | MS.gene74259:CDS |
| ACTTGGGCTATGCCAAAATT+TGG | 0.272370 | 1.1:+82283683 | MS.gene74259:CDS |
| CCTTGGTTTAACATCCTTGC+TGG | 0.273246 | 1.1:+82285853 | MS.gene74259:CDS |
| CCACCAGTCCTCTGCAGTTT+AGG | 0.276869 | 1.1:-82285023 | None:intergenic |
| TCTCAGATCAGAACAATTTC+CGG | 0.301077 | 1.1:+82283252 | MS.gene74259:CDS |
| TCGCCGATAAAGACTTTGTT+AGG | 0.308150 | 1.1:+82280356 | MS.gene74259:CDS |
| AGCTTATCTGTAAAATATTC+TGG | 0.310967 | 1.1:+82280806 | MS.gene74259:CDS |
| TGCAGATATTATGGTTCCTT+TGG | 0.312879 | 1.1:+82284705 | MS.gene74259:intron |
| AAAACTTCATTGCTAAGAAT+TGG | 0.314964 | 1.1:+82280308 | MS.gene74259:CDS |
| GATAAGAGAACTCAAGTGTT+TGG | 0.315709 | 1.1:-82287434 | None:intergenic |
| GGCAAGAAAGTTTGCTGCCT+TGG | 0.320902 | 1.1:+82285836 | MS.gene74259:CDS |
| AGAAAATGACGACGATGATA+TGG | 0.321952 | 1.1:+82286151 | MS.gene74259:CDS |
| CTCTTCTCGTCTCAGCATGC+TGG | 0.322424 | 1.1:-82287479 | None:intergenic |
| GTTCTTTGCATGTAATGAAA+TGG | 0.338050 | 1.1:-82284753 | None:intergenic |
| ATTCCTAACAAAGTCTTTAT+CGG | 0.340148 | 1.1:-82280359 | None:intergenic |
| AAAGGATCCACTTCATCAAT+TGG | 0.341738 | 1.1:-82287233 | None:intergenic |
| CAGTAGAATACAGGTCTTAT+AGG | 0.342847 | 1.1:+82281979 | MS.gene74259:CDS |
| GCCTTTCTTTCATTCGGATT+CGG | 0.343757 | 1.1:-82280157 | None:intergenic |
| AAACAGGCAGCGTGGGTTGC+AGG | 0.351039 | 1.1:+82283209 | MS.gene74259:intron |
| ATGGAGCTCTTCTTGCTATT+GGG | 0.353649 | 1.1:+82282009 | MS.gene74259:CDS |
| AAGAATGCGGAGAACGAATA+AGG | 0.358824 | 1.1:-82280641 | None:intergenic |
| ACTGTCCCCATCTTCTTGAT+TGG | 0.360820 | 1.1:+82280575 | MS.gene74259:CDS |
| ATGATAATGATCAAAAGCTT+TGG | 0.361240 | 1.1:+82281618 | MS.gene74259:CDS |
| CGCTCAAGTTCAGATTTATA+GGG | 0.366117 | 1.1:-82282062 | None:intergenic |
| AAGACAATTTCAATCAGCTT+TGG | 0.366324 | 1.1:-82285000 | None:intergenic |
| CACTGGACATGTGGAACCTT+TGG | 0.368126 | 1.1:+82284270 | MS.gene74259:CDS |
| TCCAATAGGAAACGTCATTC+AGG | 0.373563 | 1.1:+82287156 | MS.gene74259:intron |
| CAACACGTCTTTCCCGAGTT+TGG | 0.382141 | 1.1:+82282095 | MS.gene74259:CDS |
| ATCAAAATGTATTCAGTGCT+TGG | 0.383720 | 1.1:+82280947 | MS.gene74259:CDS |
| CAGTGGTTCTGACAGGGAAA+TGG | 0.388816 | 1.1:+82286208 | MS.gene74259:CDS |
| CAGTCCTGTTGGCCATCTTA+GGG | 0.388883 | 1.1:+82282118 | MS.gene74259:CDS |
| GGGACAGTGGTCGGGATAAT+CGG | 0.391844 | 1.1:-82280560 | None:intergenic |
| ATTGAACGTTTGCATAGAAC+TGG | 0.394636 | 1.1:+82285078 | MS.gene74259:CDS |
| GAATGGATGGATTAGGAATC+TGG | 0.395918 | 1.1:-82280765 | None:intergenic |
| CCCCATGATTTGCGAAGATC+AGG | 0.398780 | 1.1:-82281030 | None:intergenic |
| AATTCAAATCAGACGAAGAT+AGG | 0.399839 | 1.1:+82280677 | MS.gene74259:CDS |
| TGATAATGATCAAAAGCTTT+GGG | 0.400167 | 1.1:+82281619 | MS.gene74259:CDS |
| ATAAGAGAACTCAAGTGTTT+GGG | 0.402571 | 1.1:-82287433 | None:intergenic |
| GTTAACATGCTACGCATTAT+GGG | 0.406544 | 1.1:-82283974 | None:intergenic |
| AAGGATCCACTTCATCAATT+GGG | 0.407208 | 1.1:-82287232 | None:intergenic |
| TAAAAGAGTTGGAAGATGAT+TGG | 0.409023 | 1.1:-82280215 | None:intergenic |
| CTGACTATCAACAGTGTTTG+TGG | 0.410520 | 1.1:+82284776 | MS.gene74259:CDS |
| CCGTGCCACTCTTGATCTCC+TGG | 0.410642 | 1.1:+82285922 | MS.gene74259:CDS |
| AAGATCCACATGAGTATGTT+AGG | 0.411092 | 1.1:+82281645 | MS.gene74259:CDS |
| TCAGCAGCCTTTCTTTCATT+CGG | 0.412223 | 1.1:-82280163 | None:intergenic |
| CTTAGCATATTGCAAAAGTT+AGG | 0.417195 | 1.1:+82285584 | MS.gene74259:CDS |
| ATCCTGATCTTCGCAAATCA+TGG | 0.418182 | 1.1:+82281028 | MS.gene74259:CDS |
| GAGACTATTGTGGACAAGTT+TGG | 0.418235 | 1.1:+82283639 | MS.gene74259:CDS |
| GCAACTTGAATGGATGGATT+AGG | 0.420585 | 1.1:-82280772 | None:intergenic |
| CACAAACACTGTTGATAGTC+AGG | 0.421066 | 1.1:-82284775 | None:intergenic |
| TTGCGAAGATCAGGATCAAC+AGG | 0.425592 | 1.1:-82281021 | None:intergenic |
| TGAAGACCTTGTGTTTACTT+TGG | 0.426103 | 1.1:+82283617 | MS.gene74259:CDS |
| CTTTGGACAATTATATTTCA+AGG | 0.426833 | 1.1:+82284722 | MS.gene74259:CDS |
| GGCTGACCTTCCAAGGGAAC+AGG | 0.427511 | 1.1:-82281000 | None:intergenic |
| TGGTTAGATATTGAAGAAGT+AGG | 0.428313 | 1.1:-82281333 | None:intergenic |
| TGATCTCCTGGTTGCATACA+AGG | 0.431116 | 1.1:+82285934 | MS.gene74259:CDS |
| GCAGAGGACTGGTGGACCAC+TGG | 0.433625 | 1.1:+82285031 | MS.gene74259:CDS |
| TGGCATAGCCCAAGTGCATA+AGG | 0.439443 | 1.1:-82283675 | None:intergenic |
| GAAGATGATTGGGTGCATAT+TGG | 0.439602 | 1.1:-82280204 | None:intergenic |
| AGAACTCAAGTGTTTGGGTC+AGG | 0.439926 | 1.1:-82287428 | None:intergenic |
| TTCTTTGCATGTAATGAAAT+GGG | 0.441132 | 1.1:-82284752 | None:intergenic |
| CAACACATTGCAATGCCTTC+CGG | 0.443732 | 1.1:-82283271 | None:intergenic |
| GCATACAAGGATCAAGTTGC+AGG | 0.446246 | 1.1:+82285947 | MS.gene74259:CDS |
| TCAATGCGGACAGGTAGTTC+AGG | 0.449994 | 1.1:-82283311 | None:intergenic |
| GTTTGATCCAATCAAGAAGA+TGG | 0.450885 | 1.1:-82280582 | None:intergenic |
| GTTCTTCAAACTTATGAATG+AGG | 0.452917 | 1.1:+82283587 | MS.gene74259:CDS |
| TTCTTCAATATCTAACCAAC+AGG | 0.453303 | 1.1:+82281338 | MS.gene74259:CDS |
| CCCGAGTTTGGCAGTCCTGT+TGG | 0.454925 | 1.1:+82282107 | MS.gene74259:CDS |
| CAATTGCCAGGAGAGGCTTT+AGG | 0.466553 | 1.1:+82285890 | MS.gene74259:CDS |
| GAACCTTTGGCCATTGATGA+TGG | 0.467627 | 1.1:+82284283 | MS.gene74259:CDS |
| TCTTATCAAGCTCTTGCAAA+TGG | 0.467812 | 1.1:+82287450 | MS.gene74259:CDS |
| AGTGGTTCTGACAGGGAAAT+GGG | 0.468849 | 1.1:+82286209 | MS.gene74259:CDS |
| ATTGGAGAGGCCTGTTCCCT+TGG | 0.469011 | 1.1:+82280990 | MS.gene74259:CDS |
| ATGGGAACTGATGCTGAAGA+TGG | 0.471480 | 1.1:+82286227 | MS.gene74259:CDS |
| TCCTGATCTTCGCAAATCAT+GGG | 0.471937 | 1.1:+82281029 | MS.gene74259:CDS |
| TGTCTCGTGAATAATGTGAT+AGG | 0.472814 | 1.1:-82280707 | None:intergenic |
| CACATGTCCAGTGATATTGT+TGG | 0.473110 | 1.1:-82284260 | None:intergenic |
| TCTCCTGGCAATTGATCAGC+TGG | 0.473397 | 1.1:-82285881 | None:intergenic |
| TTGAAGACTTGTATAGTCCT+AGG | 0.475338 | 1.1:+82281772 | MS.gene74259:CDS |
| CTTCCAGCTGATCAATTGCC+AGG | 0.475735 | 1.1:+82285878 | MS.gene74259:CDS |
| TCATCTGAGTCCTCATCATC+GGG | 0.483411 | 1.1:-82287179 | None:intergenic |
| ACAATGATTTGTAAAAGAGT+TGG | 0.483438 | 1.1:-82280226 | None:intergenic |
| AGGATGACAGTGGTTCTGAC+AGG | 0.484366 | 1.1:+82286201 | MS.gene74259:CDS |
| GTTAAATATATTGAGAAGGT+GGG | 0.484925 | 1.1:-82280734 | None:intergenic |
| AAATCCACGGAGGCAGTCCT+AGG | 0.485246 | 1.1:-82281789 | None:intergenic |
| GTCATCTGAGTCCTCATCAT+CGG | 0.486522 | 1.1:-82287180 | None:intergenic |
| ATGTTTCACAAGCATTATGC+GGG | 0.488084 | 1.1:+82281235 | MS.gene74259:CDS |
| CTATAAGACCTGTATTCTAC+TGG | 0.488098 | 1.1:-82281978 | None:intergenic |
| ACTTAGAAAATTGACTGATC+AGG | 0.489306 | 1.1:+82286271 | MS.gene74259:CDS |
| TTGGCCCTAAGATGGCCAAC+AGG | 0.489970 | 1.1:-82282122 | None:intergenic |
| TGACATTCAACAGATTTAAG+TGG | 0.490324 | 1.1:-82281273 | None:intergenic |
| AGAAGATGGGGACAGTGGTC+GGG | 0.491280 | 1.1:-82280568 | None:intergenic |
| TTTCTCTCCAACAATATCAC+TGG | 0.494642 | 1.1:+82284253 | MS.gene74259:CDS |
| GAAGTAGTTGTTATACTTGA+AGG | 0.494802 | 1.1:+82280124 | MS.gene74259:CDS |
| CAAGAGTGGCACGGAATACC+CGG | 0.497487 | 1.1:-82285913 | None:intergenic |
| TGAGATTGAGAAGGAAAAGT+CGG | 0.497844 | 1.1:+82287503 | MS.gene74259:CDS |
| ATGAAGCACCAGTAGAATAC+AGG | 0.501247 | 1.1:+82281970 | MS.gene74259:CDS |
| TGATGGAAGCACTATCAGAT+TGG | 0.503592 | 1.1:+82284300 | MS.gene74259:CDS |
| GATGGAAGCACTATCAGATT+GGG | 0.504868 | 1.1:+82284301 | MS.gene74259:CDS |
| GCCAACAGGACTGCCAAACT+CGG | 0.505683 | 1.1:-82282108 | None:intergenic |
| ATCAACAGGCTGACCTTCCA+AGG | 0.505833 | 1.1:-82281007 | None:intergenic |
| GGACAAGTTTGGTGAAGAAA+TGG | 0.506738 | 1.1:+82283650 | MS.gene74259:CDS |
| ACCCGGCCTAAAGCCTCTCC+TGG | 0.506757 | 1.1:-82285896 | None:intergenic |
| AAAAGAGTTGGAAGATGATT+GGG | 0.509158 | 1.1:-82280214 | None:intergenic |
| TTCGCAAATCATGGGGTTGG+TGG | 0.509717 | 1.1:+82281037 | MS.gene74259:CDS |
| GAAATGGCACCTTATGCACT+TGG | 0.509924 | 1.1:+82283666 | MS.gene74259:CDS |
| AGTAGGTTGATAACTCTGTC+AGG | 0.510634 | 1.1:-82281316 | None:intergenic |
| ACAGTCCCCAATTGATGAAG+TGG | 0.510949 | 1.1:+82287226 | MS.gene74259:CDS |
| GCCAGGAGAGGCTTTAGGCC+GGG | 0.512244 | 1.1:+82285895 | MS.gene74259:CDS |
| TTTGGACAATTATATTTCAA+GGG | 0.512445 | 1.1:+82284723 | MS.gene74259:CDS |
| AAAGGCTGCTGAACAAAGGT+TGG | 0.513295 | 1.1:+82280174 | MS.gene74259:CDS |
| CGCTGATGATTCAAGTTCAA+TGG | 0.515595 | 1.1:+82283859 | MS.gene74259:CDS |
| CTTTGCAGAAGCTGCAGAAG+AGG | 0.515709 | 1.1:+82286115 | MS.gene74259:intron |
| AAGAAGATGGGGACAGTGGT+CGG | 0.516125 | 1.1:-82280569 | None:intergenic |
| TGTTAAATATATTGAGAAGG+TGG | 0.516144 | 1.1:-82280735 | None:intergenic |
| TGCCAGGAGAGGCTTTAGGC+CGG | 0.518509 | 1.1:+82285894 | MS.gene74259:CDS |
| TCTTCTCGTCTCAGCATGCT+GGG | 0.520955 | 1.1:-82287478 | None:intergenic |
| AGATCAGCAACTTGAATGGA+TGG | 0.521481 | 1.1:-82280778 | None:intergenic |
| GTGAGTTGGTTCGAAAGCGC+AGG | 0.523922 | 1.1:+82281817 | MS.gene74259:CDS |
| TGTATACTGTGCTGCAGCCT+CGG | 0.524758 | 1.1:+82281549 | MS.gene74259:CDS |
| TCAATTGTAATTCTGAGATA+CGG | 0.526551 | 1.1:-82285060 | None:intergenic |
| CTTCCTAAACTGCAGAGGAC+TGG | 0.526734 | 1.1:+82285020 | MS.gene74259:CDS |
| TTTGATCCAATCAAGAAGAT+GGG | 0.528330 | 1.1:-82280581 | None:intergenic |
| CGCATTATGGGAAGCAAGGT+AGG | 0.531290 | 1.1:-82283962 | None:intergenic |
| GTCATTCAGGCCCGATGATG+AGG | 0.532142 | 1.1:+82287169 | MS.gene74259:CDS |
| GAGAGGCCTGTTCCCTTGGA+AGG | 0.534183 | 1.1:+82280994 | MS.gene74259:CDS |
| TCCGAATCCGAATGAAAGAA+AGG | 0.536209 | 1.1:+82280156 | MS.gene74259:CDS |
| ACCGTACCTTGGCCCTAAGA+TGG | 0.536280 | 1.1:-82282130 | None:intergenic |
| CTGTTGAATGTCATTCGAGC+AGG | 0.539977 | 1.1:+82281283 | MS.gene74259:CDS |
| GAAATGTCTTCTCATTCAAG+TGG | 0.539995 | 1.1:+82285113 | MS.gene74259:CDS |
| TGTTGGCCATCTTAGGGCCA+AGG | 0.540483 | 1.1:+82282124 | MS.gene74259:CDS |
| AGCTGATCAATTGCCAGGAG+AGG | 0.544550 | 1.1:+82285883 | MS.gene74259:CDS |
| ATCTTCGCAAATCATGGGGT+TGG | 0.544792 | 1.1:+82281034 | MS.gene74259:CDS |
| GATAGTGCTTCCATCATCAA+TGG | 0.545002 | 1.1:-82284293 | None:intergenic |
| CAGAGGACTGGTGGACCACT+GGG | 0.550023 | 1.1:+82285032 | MS.gene74259:CDS |
| TGGGAACTGATGCTGAAGAT+GGG | 0.553757 | 1.1:+82286228 | MS.gene74259:CDS |
| CAACAATATCACTGGACATG+TGG | 0.554151 | 1.1:+82284261 | MS.gene74259:CDS |
| TCGTGAATAATGTGATAGGC+AGG | 0.555259 | 1.1:-82280703 | None:intergenic |
| AGGTCTTATAGGCAGAAAGA+TGG | 0.556191 | 1.1:+82281990 | MS.gene74259:CDS |
| CTCAAAAGAGAAGGAAGTTG+AGG | 0.557170 | 1.1:-82280400 | None:intergenic |
| GTTTACTTTGGAGACTATTG+TGG | 0.557940 | 1.1:+82283629 | MS.gene74259:CDS |
| ATAGGTACGTACATATATAG+AGG | 0.560975 | 1.1:-82280830 | None:intergenic |
| TGCAGAAGCTGCAGAAGAGG+AGG | 0.562224 | 1.1:+82286118 | MS.gene74259:intron |
| CACGTACCATCAAGGAGCGA+AGG | 0.566318 | 1.1:-82283492 | None:intergenic |
| GCTGCGAAACCCTGAAAACA+AGG | 0.567003 | 1.1:+82281201 | MS.gene74259:CDS |
| GAGTATGTTAGGAAAGGCTA+TGG | 0.572371 | 1.1:+82281656 | MS.gene74259:CDS |
| ATCAGCTGGAAGTGCCAGCA+AGG | 0.574149 | 1.1:-82285867 | None:intergenic |
| GATGAGATCAGCAACTTGAA+TGG | 0.574179 | 1.1:-82280782 | None:intergenic |
| CAGCATGCTGAGACGAGAAG+AGG | 0.576433 | 1.1:+82287480 | MS.gene74259:CDS |
| GAATGGCGGCAACTTGTCTG+AGG | 0.576913 | 1.1:-82280279 | None:intergenic |
| TTAAATATATTGAGAAGGTG+GGG | 0.581029 | 1.1:-82280733 | None:intergenic |
| CCTAAACTGCAGAGGACTGG+TGG | 0.581251 | 1.1:+82285023 | MS.gene74259:CDS |
| GAGAAGAGGTGAGATTGAGA+AGG | 0.581346 | 1.1:+82287494 | MS.gene74259:CDS |
| TTGAATGTCATTCGAGCAGG+TGG | 0.583758 | 1.1:+82281286 | MS.gene74259:CDS |
| TAAGGGAATACCTTGACCAT+CGG | 0.584319 | 1.1:-82283999 | None:intergenic |
| ATAGCATACCTCAAAAGAGA+AGG | 0.586840 | 1.1:-82280409 | None:intergenic |
| TTGGACAATTATATTTCAAG+GGG | 0.589802 | 1.1:+82284724 | MS.gene74259:CDS |
| CCACATGAGTATGTTAGGAA+AGG | 0.589934 | 1.1:+82281650 | MS.gene74259:CDS |
| AAAACAGAATCAATGCGGAC+AGG | 0.593718 | 1.1:-82283320 | None:intergenic |
| TATCATTGAAGCACATGAGA+GGG | 0.594402 | 1.1:-82281601 | None:intergenic |
| AATGTTTCACAAGCATTATG+CGG | 0.595466 | 1.1:+82281234 | MS.gene74259:CDS |
| TCCAAAAGCTTAAGAATCTG+TGG | 0.596418 | 1.1:-82287541 | None:intergenic |
| AAAGAAAGGCTGCTGAACAA+AGG | 0.597576 | 1.1:+82280170 | MS.gene74259:CDS |
| TCAAGTTCAATGGCTGCAGT+TGG | 0.600507 | 1.1:+82283869 | MS.gene74259:CDS |
| CCAACAGGACTGCCAAACTC+GGG | 0.601191 | 1.1:-82282107 | None:intergenic |
| AGGATCCACTTCATCAATTG+GGG | 0.601464 | 1.1:-82287231 | None:intergenic |
| CATATTTAATAGAAAGAATG+CGG | 0.602450 | 1.1:-82280654 | None:intergenic |
| ATGTTAACAACCGATGGTCA+AGG | 0.603700 | 1.1:+82283989 | MS.gene74259:CDS |
| CTTGATCCTTGTATGCAACC+AGG | 0.604622 | 1.1:-82285940 | None:intergenic |
| GTGTGTTAAATATATTGAGA+AGG | 0.607757 | 1.1:-82280738 | None:intergenic |
| TCTGATCTGAGAAGCTAATG+TGG | 0.613687 | 1.1:-82283241 | None:intergenic |
| AATATCAGAGACAGAATCGT+CGG | 0.616544 | 1.1:-82280254 | None:intergenic |
| GGATGACAGTGGTTCTGACA+GGG | 0.618263 | 1.1:+82286202 | MS.gene74259:CDS |
| TTCTAAACAGACTCTACACT+CGG | 0.620641 | 1.1:+82281085 | MS.gene74259:CDS |
| GCTACGCATTATGGGAAGCA+AGG | 0.622515 | 1.1:-82283966 | None:intergenic |
| TGAGTTGGTTCGAAAGCGCA+GGG | 0.626418 | 1.1:+82281818 | MS.gene74259:CDS |
| TAGTCCTAGGACTGCCTCCG+TGG | 0.626651 | 1.1:+82281785 | MS.gene74259:CDS |
| AAATGGCACCTTATGCACTT+GGG | 0.628408 | 1.1:+82283667 | MS.gene74259:CDS |
| CGTAGCATGTTAACAACCGA+TGG | 0.630518 | 1.1:+82283983 | MS.gene74259:CDS |
| CTTGAAATATAATTGTCCAA+AGG | 0.630964 | 1.1:-82284721 | None:intergenic |
| AATGGCGGCAACTTGTCTGA+GGG | 0.630984 | 1.1:-82280278 | None:intergenic |
| CAACTCACTCATAAAATCCA+CGG | 0.633012 | 1.1:-82281802 | None:intergenic |
| AAAAGAAGAACGTCAAGCCG+AGG | 0.634422 | 1.1:-82281566 | None:intergenic |
| CTGCAAGAAGTCAAGAAGAG+TGG | 0.634459 | 1.1:+82285644 | MS.gene74259:CDS |
| TTATCATTGAAGCACATGAG+AGG | 0.634688 | 1.1:-82281602 | None:intergenic |
| ATTGTCTTCCTAAACTGCAG+AGG | 0.634847 | 1.1:+82285015 | MS.gene74259:CDS |
| CTTCCATCATCAATGGCCAA+AGG | 0.636876 | 1.1:-82284286 | None:intergenic |
| GAAAGAGATTGAGTGAGCAG+TGG | 0.640985 | 1.1:-82280335 | None:intergenic |
| AAATGTATTCAGTGCTTGGA+TGG | 0.641307 | 1.1:+82280951 | MS.gene74259:CDS |
| ACGTACCATCAAGGAGCGAA+GGG | 0.642973 | 1.1:-82283491 | None:intergenic |
| CCTGATCTTCGCAAATCATG+GGG | 0.645502 | 1.1:+82281030 | MS.gene74259:CDS |
| CCTTTCCTAACATACTCATG+TGG | 0.647215 | 1.1:-82281650 | None:intergenic |
| TCAAACTGATGATGAAGATG+AGG | 0.647870 | 1.1:+82286181 | MS.gene74259:CDS |
| CTGATCTGAGAAGCTAATGT+GGG | 0.648144 | 1.1:-82283240 | None:intergenic |
| TTGATCCAATCAAGAAGATG+GGG | 0.650413 | 1.1:-82280580 | None:intergenic |
| CCAGGAGATCAAGAGTGGCA+CGG | 0.650577 | 1.1:-82285922 | None:intergenic |
| TGCAACCAGGAGATCAAGAG+TGG | 0.652472 | 1.1:-82285927 | None:intergenic |
| TGCAATCATCAGATCCAATG+AGG | 0.656544 | 1.1:+82287397 | MS.gene74259:CDS |
| AATCAAGAAGATGGGGACAG+TGG | 0.659255 | 1.1:-82280573 | None:intergenic |
| GCATTGCAATGTGTTGTCTG+TGG | 0.661281 | 1.1:+82283278 | MS.gene74259:CDS |
| AGATCAGAACAATTTCCGGA+AGG | 0.668438 | 1.1:+82283256 | MS.gene74259:CDS |
| GGGAACTGATGCTGAAGATG+GGG | 0.669290 | 1.1:+82286229 | MS.gene74259:CDS |
| TCAACAGGCTGACCTTCCAA+GGG | 0.680227 | 1.1:-82281006 | None:intergenic |
| TAGTCTCCAAAGTAAACACA+AGG | 0.681795 | 1.1:-82283623 | None:intergenic |
| AATGACGACGATGATATGGA+CGG | 0.695430 | 1.1:+82286155 | MS.gene74259:CDS |
| CAATATGCTAAGAGTCAATG+TGG | 0.695584 | 1.1:-82285573 | None:intergenic |
| TGTTTCACAAGCATTATGCG+GGG | 0.696183 | 1.1:+82281236 | MS.gene74259:CDS |
| TGAGATACGGCTCAACCCAG+TGG | 0.705549 | 1.1:-82285047 | None:intergenic |
| CCAGCAAGGATGTTAAACCA+AGG | 0.712970 | 1.1:-82285853 | None:intergenic |
| GATGAAGATGAGGATGACAG+TGG | 0.770603 | 1.1:+82286191 | MS.gene74259:CDS |
| CTCACTCATAAAATCCACGG+AGG | 0.783942 | 1.1:-82281799 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 82280118 | 82287554 | 82280118 | ID=MS.gene74259 |
| chr1.1 | mRNA | 82280118 | 82287554 | 82280118 | ID=MS.gene74259.t1;Parent=MS.gene74259 |
| chr1.1 | exon | 82280118 | 82280422 | 82280118 | ID=MS.gene74259.t1.exon1;Parent=MS.gene74259.t1 |
| chr1.1 | CDS | 82280118 | 82280422 | 82280118 | ID=cds.MS.gene74259.t1;Parent=MS.gene74259.t1 |
| chr1.1 | exon | 82280522 | 82280840 | 82280522 | ID=MS.gene74259.t1.exon2;Parent=MS.gene74259.t1 |
| chr1.1 | CDS | 82280522 | 82280840 | 82280522 | ID=cds.MS.gene74259.t1;Parent=MS.gene74259.t1 |
| chr1.1 | exon | 82280922 | 82281106 | 82280922 | ID=MS.gene74259.t1.exon3;Parent=MS.gene74259.t1 |
| chr1.1 | CDS | 82280922 | 82281106 | 82280922 | ID=cds.MS.gene74259.t1;Parent=MS.gene74259.t1 |
| chr1.1 | exon | 82281186 | 82281359 | 82281186 | ID=MS.gene74259.t1.exon4;Parent=MS.gene74259.t1 |
| chr1.1 | CDS | 82281186 | 82281359 | 82281186 | ID=cds.MS.gene74259.t1;Parent=MS.gene74259.t1 |
| chr1.1 | exon | 82281532 | 82281677 | 82281532 | ID=MS.gene74259.t1.exon5;Parent=MS.gene74259.t1 |
| chr1.1 | CDS | 82281532 | 82281677 | 82281532 | ID=cds.MS.gene74259.t1;Parent=MS.gene74259.t1 |
| chr1.1 | exon | 82281766 | 82281889 | 82281766 | ID=MS.gene74259.t1.exon6;Parent=MS.gene74259.t1 |
| chr1.1 | CDS | 82281766 | 82281889 | 82281766 | ID=cds.MS.gene74259.t1;Parent=MS.gene74259.t1 |
| chr1.1 | exon | 82281965 | 82282145 | 82281965 | ID=MS.gene74259.t1.exon7;Parent=MS.gene74259.t1 |
| chr1.1 | CDS | 82281965 | 82282145 | 82281965 | ID=cds.MS.gene74259.t1;Parent=MS.gene74259.t1 |
| chr1.1 | exon | 82283215 | 82283374 | 82283215 | ID=MS.gene74259.t1.exon8;Parent=MS.gene74259.t1 |
| chr1.1 | CDS | 82283215 | 82283374 | 82283215 | ID=cds.MS.gene74259.t1;Parent=MS.gene74259.t1 |
| chr1.1 | exon | 82283466 | 82283507 | 82283466 | ID=MS.gene74259.t1.exon9;Parent=MS.gene74259.t1 |
| chr1.1 | CDS | 82283466 | 82283507 | 82283466 | ID=cds.MS.gene74259.t1;Parent=MS.gene74259.t1 |
| chr1.1 | exon | 82283586 | 82283704 | 82283586 | ID=MS.gene74259.t1.exon10;Parent=MS.gene74259.t1 |
| chr1.1 | CDS | 82283586 | 82283704 | 82283586 | ID=cds.MS.gene74259.t1;Parent=MS.gene74259.t1 |
| chr1.1 | exon | 82283812 | 82284010 | 82283812 | ID=MS.gene74259.t1.exon11;Parent=MS.gene74259.t1 |
| chr1.1 | CDS | 82283812 | 82284010 | 82283812 | ID=cds.MS.gene74259.t1;Parent=MS.gene74259.t1 |
| chr1.1 | exon | 82284210 | 82284341 | 82284210 | ID=MS.gene74259.t1.exon12;Parent=MS.gene74259.t1 |
| chr1.1 | CDS | 82284210 | 82284341 | 82284210 | ID=cds.MS.gene74259.t1;Parent=MS.gene74259.t1 |
| chr1.1 | exon | 82284710 | 82284813 | 82284710 | ID=MS.gene74259.t1.exon13;Parent=MS.gene74259.t1 |
| chr1.1 | CDS | 82284710 | 82284813 | 82284710 | ID=cds.MS.gene74259.t1;Parent=MS.gene74259.t1 |
| chr1.1 | exon | 82284955 | 82285134 | 82284955 | ID=MS.gene74259.t1.exon14;Parent=MS.gene74259.t1 |
| chr1.1 | CDS | 82284955 | 82285134 | 82284955 | ID=cds.MS.gene74259.t1;Parent=MS.gene74259.t1 |
| chr1.1 | exon | 82285548 | 82285687 | 82285548 | ID=MS.gene74259.t1.exon15;Parent=MS.gene74259.t1 |
| chr1.1 | CDS | 82285548 | 82285687 | 82285548 | ID=cds.MS.gene74259.t1;Parent=MS.gene74259.t1 |
| chr1.1 | exon | 82285829 | 82285968 | 82285829 | ID=MS.gene74259.t1.exon16;Parent=MS.gene74259.t1 |
| chr1.1 | CDS | 82285829 | 82285968 | 82285829 | ID=cds.MS.gene74259.t1;Parent=MS.gene74259.t1 |
| chr1.1 | exon | 82286123 | 82286292 | 82286123 | ID=MS.gene74259.t1.exon17;Parent=MS.gene74259.t1 |
| chr1.1 | CDS | 82286123 | 82286292 | 82286123 | ID=cds.MS.gene74259.t1;Parent=MS.gene74259.t1 |
| chr1.1 | exon | 82287164 | 82287281 | 82287164 | ID=MS.gene74259.t1.exon18;Parent=MS.gene74259.t1 |
| chr1.1 | CDS | 82287164 | 82287281 | 82287164 | ID=cds.MS.gene74259.t1;Parent=MS.gene74259.t1 |
| chr1.1 | exon | 82287394 | 82287554 | 82287394 | ID=MS.gene74259.t1.exon19;Parent=MS.gene74259.t1 |
| chr1.1 | CDS | 82287394 | 82287554 | 82287394 | ID=cds.MS.gene74259.t1;Parent=MS.gene74259.t1 |
| Gene Sequence |
| Protein sequence |
