Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75135.t1 | GAU12187.1 | 68 | 247 | 26 | 1 | 9 | 202 | 157 | 403 | 4.20E-87 | 330.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75135.t1 | O07834 | 31.4 | 137 | 92 | 2 | 9 | 144 | 97 | 232 | 7.4e-16 | 85.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75135.t1 | A0A2K3NNK6 | 50.1 | 335 | 26 | 1 | 9 | 202 | 176 | 510 | 1.1e-76 | 295.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051744 | MS.gene75135 | 0.811044 | 8.52E-51 | -1.69E-46 |
| MS.gene056050 | MS.gene75135 | 0.810688 | 1.02E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75135.t1 | MTR_1g115230 | 93.007 | 143 | 10 | 0 | 9 | 151 | 68 | 210 | 3.38e-90 | 278 |
| MS.gene75135.t1 | MTR_1g115230 | 92.453 | 53 | 4 | 0 | 150 | 202 | 422 | 474 | 2.89e-25 | 102 |
| MS.gene75135.t1 | MTR_5g048280 | 31.250 | 144 | 94 | 3 | 13 | 153 | 116 | 257 | 2.57e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75135.t1 | AT1G50380 | 71.528 | 144 | 41 | 0 | 9 | 152 | 75 | 218 | 7.86e-69 | 223 |
| MS.gene75135.t1 | AT1G50380 | 79.245 | 53 | 11 | 0 | 150 | 202 | 429 | 481 | 2.69e-20 | 88.6 |
| MS.gene75135.t1 | AT1G50380 | 71.528 | 144 | 41 | 0 | 9 | 152 | 141 | 284 | 1.98e-68 | 223 |
| MS.gene75135.t1 | AT1G50380 | 79.245 | 53 | 11 | 0 | 150 | 202 | 495 | 547 | 2.99e-20 | 88.6 |
| MS.gene75135.t1 | AT1G69020 | 30.233 | 172 | 107 | 4 | 10 | 174 | 107 | 272 | 2.24e-11 | 62.8 |
Find 46 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGCTACTAACTTGTTATT+TGG | 0.087936 | 1.1:+80843655 | None:intergenic |
| TCAGATCCATTACTACTTTA+TGG | 0.129739 | 1.1:-80842584 | MS.gene75135:CDS |
| TTACTATTATACGAAAATTT+TGG | 0.202008 | 1.1:-80843958 | MS.gene75135:CDS |
| TCCTCCTGAGCATGTTATTT+TGG | 0.223944 | 1.1:-80843841 | MS.gene75135:CDS |
| ATGCTACTAACTTGTTATTT+GGG | 0.325588 | 1.1:+80843656 | None:intergenic |
| AAAGATCTTGCGAAGCTTGA+TGG | 0.328021 | 1.1:-80842608 | MS.gene75135:CDS |
| AGTATATATTTCATCTCCTT+TGG | 0.347787 | 1.1:+80843621 | None:intergenic |
| TCCTATTGTTCTCAGGTTCT+CGG | 0.373350 | 1.1:-80842719 | MS.gene75135:intron |
| CATTAACAGATGGAACCTTT+TGG | 0.374692 | 1.1:+80843889 | None:intergenic |
| GGAGAATTTCCCACCTTGTC+AGG | 0.392612 | 1.1:+80843475 | None:intergenic |
| ATCGAGACTCAAGCTGCAAT+TGG | 0.433413 | 1.1:-80843583 | MS.gene75135:CDS |
| ACATGCTCAGGAGGAGCATC+AGG | 0.440289 | 1.1:+80843849 | None:intergenic |
| GTGTAACATCAAACCTTGAA+TGG | 0.445714 | 1.1:-80843546 | MS.gene75135:CDS |
| CCATTACTACTTTATGGCTA+CGG | 0.485771 | 1.1:-80842578 | MS.gene75135:CDS |
| TCATCCAAAATAACATGCTC+AGG | 0.488078 | 1.1:+80843837 | None:intergenic |
| CATTACTACTTTATGGCTAC+GGG | 0.491993 | 1.1:-80842577 | MS.gene75135:CDS |
| CCGTAGCCATAAAGTAGTAA+TGG | 0.504218 | 1.1:+80842578 | None:intergenic |
| CATCACCACCAGCCCATTCA+AGG | 0.505524 | 1.1:+80843533 | None:intergenic |
| GGAAAATGCTTACACCGATT+CGG | 0.512108 | 1.1:-80844803 | None:intergenic |
| TACACCGATTCGGTCATGTC+AGG | 0.514534 | 1.1:-80844793 | MS.gene75135:intron |
| GTTAATGACACCATGCCTAC+AGG | 0.526408 | 1.1:-80843873 | MS.gene75135:CDS |
| GATACCTGACATGACCGAAT+CGG | 0.533607 | 1.1:+80844789 | None:intergenic |
| AATATATACTGTTTATGTCA+TGG | 0.538740 | 1.1:-80843608 | MS.gene75135:CDS |
| TGTAACATCAAACCTTGAAT+GGG | 0.542086 | 1.1:-80843545 | MS.gene75135:CDS |
| TAATACGACCCTTTGCGTAC+AGG | 0.547949 | 1.1:+80843978 | None:intergenic |
| TTCAAGGTTTGATGTTACAC+TGG | 0.548154 | 1.1:+80843549 | None:intergenic |
| CCGTATATCCGATAACCAAA+AGG | 0.550075 | 1.1:-80843904 | MS.gene75135:CDS |
| CTTTATGGCTACGGGTCTTG+AGG | 0.555022 | 1.1:-80842569 | None:intergenic |
| AGCATCAGGTCCTGTAGGCA+TGG | 0.564851 | 1.1:+80843863 | None:intergenic |
| CAGTGGGCACATGCTTCAGA+TGG | 0.568505 | 1.1:-80842662 | MS.gene75135:CDS |
| TAACTGCACCTGTACGCAAA+GGG | 0.575768 | 1.1:-80843986 | MS.gene75135:CDS |
| CAACAAAATACGTCACTGAA+AGG | 0.580218 | 1.1:-80842685 | MS.gene75135:CDS |
| TGCTCTAGTTTATGTAACAA+TGG | 0.586588 | 1.1:-80843512 | MS.gene75135:CDS |
| AATACGTCACTGAAAGGCAG+TGG | 0.587769 | 1.1:-80842679 | MS.gene75135:CDS |
| ACATCAAACCTTGAATGGGC+TGG | 0.602081 | 1.1:-80843541 | MS.gene75135:CDS |
| GGAGGAGCATCAGGTCCTGT+AGG | 0.606439 | 1.1:+80843858 | None:intergenic |
| CAGCACGAATACTACAGTAT+CGG | 0.612278 | 1.1:-80843798 | MS.gene75135:CDS |
| TTTGATGTTACACTGGCAAG+AGG | 0.621915 | 1.1:+80843556 | None:intergenic |
| GGCATGGTGTCATTAACAGA+TGG | 0.625215 | 1.1:+80843879 | None:intergenic |
| ATAACTGCACCTGTACGCAA+AGG | 0.628634 | 1.1:-80843987 | MS.gene75135:CDS |
| TCCAAAATAACATGCTCAGG+AGG | 0.646141 | 1.1:+80843840 | None:intergenic |
| TAATATTCTTAGACCTGACA+AGG | 0.648307 | 1.1:-80843488 | MS.gene75135:intron |
| ATACGTCACTGAAAGGCAGT+GGG | 0.650078 | 1.1:-80842678 | MS.gene75135:CDS |
| GCATATGCAGAAGACACCAA+AGG | 0.654059 | 1.1:-80843637 | MS.gene75135:CDS |
| TATTGTTCTCAGGTTCTCGG+AGG | 0.667662 | 1.1:-80842716 | MS.gene75135:intron |
| TCAAACCTTGAATGGGCTGG+TGG | 0.679492 | 1.1:-80843538 | MS.gene75135:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTACTATTATAACTATTAT+AGG | - | chr1.1:80844571-80844590 | MS.gene75135:intron | 10.0% |
| !!! | TTAAAATTTTATTTCTTTTC+AGG | - | chr1.1:80843686-80843705 | MS.gene75135:intron | 10.0% |
| !! | TTTAGAAAAACTATAACAAA+CGG | - | chr1.1:80843067-80843086 | MS.gene75135:intron | 15.0% |
| !!! | AATTCAATGATATCAATTTT+TGG | + | chr1.1:80844509-80844528 | None:intergenic | 15.0% |
| !!! | TTACTATTATACGAAAATTT+TGG | - | chr1.1:80843411-80843430 | MS.gene75135:intron | 15.0% |
| !!! | TTTTCAATTTCAATTTGTTT+AGG | - | chr1.1:80844151-80844170 | MS.gene75135:intron | 15.0% |
| !! | AAACAGATTATTAAAACCAT+TGG | + | chr1.1:80842837-80842856 | None:intergenic | 20.0% |
| !! | AATATATACTGTTTATGTCA+TGG | - | chr1.1:80843761-80843780 | MS.gene75135:intron | 20.0% |
| !! | TTAGAAAAACTATAACAAAC+GGG | - | chr1.1:80843068-80843087 | MS.gene75135:intron | 20.0% |
| !! | TTAGATCATATCATTATCAT+GGG | - | chr1.1:80843605-80843624 | MS.gene75135:CDS | 20.0% |
| !!! | AATTAGGTTCTAATTCAATT+CGG | + | chr1.1:80844188-80844207 | None:intergenic | 20.0% |
| !!! | ATACACATTTTTCATTTTCT+AGG | - | chr1.1:80843351-80843370 | MS.gene75135:intron | 20.0% |
| !!! | ATTATACGAAAATTTTGGAA+GGG | - | chr1.1:80843416-80843435 | MS.gene75135:intron | 20.0% |
| !!! | TATTATACGAAAATTTTGGA+AGG | - | chr1.1:80843415-80843434 | MS.gene75135:intron | 20.0% |
| !!! | TGTTAAAAAAGTTGATAAGA+TGG | + | chr1.1:80844040-80844059 | None:intergenic | 20.0% |
| ! | AAATTAGAAGATGAGATTTG+TGG | - | chr1.1:80844230-80844249 | MS.gene75135:intron | 25.0% |
| ! | AGTATATATTTCATCTCCTT+TGG | + | chr1.1:80843751-80843770 | None:intergenic | 25.0% |
| ! | GTTAGATCATATCATTATCA+TGG | - | chr1.1:80843604-80843623 | MS.gene75135:CDS | 25.0% |
| ! | TCAAAAAAGTCGATCTAAAT+AGG | - | chr1.1:80843111-80843130 | MS.gene75135:intron | 25.0% |
| ! | TCTTTATATCTGGCTAAATT+AGG | + | chr1.1:80844204-80844223 | None:intergenic | 25.0% |
| ! | TTTGAACTCATTGTACAAAT+GGG | - | chr1.1:80843197-80843216 | MS.gene75135:intron | 25.0% |
| !! | ATTTTCAGCATCTTTATATC+TGG | + | chr1.1:80844214-80844233 | None:intergenic | 25.0% |
| !!! | ATGCTACTAACTTGTTATTT+GGG | + | chr1.1:80843716-80843735 | None:intergenic | 25.0% |
| !!! | TAAAAAAGTTGATAAGATGG+AGG | + | chr1.1:80844037-80844056 | None:intergenic | 25.0% |
| !!! | TATCTACTTGAGCTTTTTTA+AGG | - | chr1.1:80844333-80844352 | MS.gene75135:intron | 25.0% |
| !!! | TATGCTACTAACTTGTTATT+TGG | + | chr1.1:80843717-80843736 | None:intergenic | 25.0% |
| !!! | TATTTTGGATGAGAATATCA+AGG | - | chr1.1:80843543-80843562 | MS.gene75135:CDS | 25.0% |
| AAATTGAAAACATTGCCCAA+GGG | + | chr1.1:80844141-80844160 | None:intergenic | 30.0% | |
| AACGAAAACTAGTTACTGTT+AGG | + | chr1.1:80842777-80842796 | None:intergenic | 30.0% | |
| AGATCCGAACAATTAAATAC+TGG | + | chr1.1:80843927-80843946 | None:intergenic | 30.0% | |
| AGTCAAATCATGAAAAGCTT+TGG | + | chr1.1:80843986-80844005 | None:intergenic | 30.0% | |
| CAACCCAGTATTTAATTGTT+CGG | - | chr1.1:80843920-80843939 | MS.gene75135:CDS | 30.0% | |
| CAATAGGAGACAAATAATAC+AGG | + | chr1.1:80844638-80844657 | None:intergenic | 30.0% | |
| CGATCTAAATAGGTTCAATA+TGG | - | chr1.1:80843121-80843140 | MS.gene75135:intron | 30.0% | |
| GATCCGAACAATTAAATACT+GGG | + | chr1.1:80843926-80843945 | None:intergenic | 30.0% | |
| GTTTGAACTCATTGTACAAA+TGG | - | chr1.1:80843196-80843215 | MS.gene75135:intron | 30.0% | |
| TAATATTCTTAGACCTGACA+AGG | - | chr1.1:80843881-80843900 | MS.gene75135:CDS | 30.0% | |
| TCAGATCCATTACTACTTTA+TGG | - | chr1.1:80844785-80844804 | MS.gene75135:intron | 30.0% | |
| TGAGCTTATCTACTGAAATA+CGG | + | chr1.1:80843094-80843113 | None:intergenic | 30.0% | |
| TGTAACATCAAACCTTGAAT+GGG | - | chr1.1:80843824-80843843 | MS.gene75135:CDS | 30.0% | |
| ! | CAATTAAATACTGGGTTGAA+AGG | + | chr1.1:80843918-80843937 | None:intergenic | 30.0% |
| ! | CACATTTTTCATTTTCTAGG+AGG | - | chr1.1:80843354-80843373 | MS.gene75135:intron | 30.0% |
| ! | TGCTCTAGTTTATGTAACAA+TGG | - | chr1.1:80843857-80843876 | MS.gene75135:CDS | 30.0% |
| ! | TTTTCTGCTTAATTCAAAGC+CGG | - | chr1.1:80844291-80844310 | MS.gene75135:intron | 30.0% |
| !!! | AGAAGGCTTTTGAAATTTGA+AGG | - | chr1.1:80843299-80843318 | MS.gene75135:intron | 30.0% |
| !!! | ATTGCTTCTTTTTTTCCCAA+AGG | - | chr1.1:80844526-80844545 | MS.gene75135:intron | 30.0% |
| AAATTACTCCACAAGTCCTT+TGG | + | chr1.1:80844545-80844564 | None:intergenic | 35.0% | |
| AAGCAGAAAACATCCAGTTT+CGG | + | chr1.1:80844281-80844300 | None:intergenic | 35.0% | |
| AATTACTCCACAAGTCCTTT+GGG | + | chr1.1:80844544-80844563 | None:intergenic | 35.0% | |
| AGGATCATGAATCGATTGTT+TGG | + | chr1.1:80844095-80844114 | None:intergenic | 35.0% | |
| ATATATACACACGCTTCAGA+AGG | - | chr1.1:80843282-80843301 | MS.gene75135:intron | 35.0% | |
| ATCAGTCAGAAACTTATGTC+CGG | + | chr1.1:80844313-80844332 | None:intergenic | 35.0% | |
| ATTGTTTGGACATAGGAGAA+AGG | + | chr1.1:80844081-80844100 | None:intergenic | 35.0% | |
| ATTTGTCTCCTATTGTTCTC+AGG | - | chr1.1:80844643-80844662 | MS.gene75135:intron | 35.0% | |
| CAACAAAATACGTCACTGAA+AGG | - | chr1.1:80844684-80844703 | MS.gene75135:intron | 35.0% | |
| CATTACTACTTTATGGCTAC+GGG | - | chr1.1:80844792-80844811 | MS.gene75135:intron | 35.0% | |
| CCATTACTACTTTATGGCTA+CGG | - | chr1.1:80844791-80844810 | MS.gene75135:intron | 35.0% | |
| GAAATTGAAAACATTGCCCA+AGG | + | chr1.1:80844142-80844161 | None:intergenic | 35.0% | |
| GAATGTGTAATTCAATGCAC+AGG | - | chr1.1:80842707-80842726 | MS.gene75135:CDS | 35.0% | |
| GAGCAATTGAACATAACTCA+AGG | + | chr1.1:80844609-80844628 | None:intergenic | 35.0% | |
| GCGTGTGTATATATAGCAAT+AGG | + | chr1.1:80843276-80843295 | None:intergenic | 35.0% | |
| GTGTAACATCAAACCTTGAA+TGG | - | chr1.1:80843823-80843842 | MS.gene75135:CDS | 35.0% | |
| TCATCCAAAATAACATGCTC+AGG | + | chr1.1:80843535-80843554 | None:intergenic | 35.0% | |
| TGAATCGATTGTTTGGACAT+AGG | + | chr1.1:80844088-80844107 | None:intergenic | 35.0% | |
| TGTAATTCAATGCACAGGTT+TGG | - | chr1.1:80842712-80842731 | MS.gene75135:intron | 35.0% | |
| TTCAAGGTTTGATGTTACAC+TGG | + | chr1.1:80843823-80843842 | None:intergenic | 35.0% | |
| ! | CATTAACAGATGGAACCTTT+TGG | + | chr1.1:80843483-80843502 | None:intergenic | 35.0% |
| !! | AAAAGCATTGAAAGCGAAAG+AGG | + | chr1.1:80842630-80842649 | None:intergenic | 35.0% |
| !! | AGATGGAACCTTTTGGTTAT+CGG | + | chr1.1:80843476-80843495 | None:intergenic | 35.0% |
| !! | CCTTTTGGTTATCGGATATA+CGG | + | chr1.1:80843468-80843487 | None:intergenic | 35.0% |
| !! | TACGAAAATTTTGGAAGGGA+AGG | - | chr1.1:80843420-80843439 | MS.gene75135:intron | 35.0% |
| !!! | CTACAGTATCGGTACTTTTA+AGG | - | chr1.1:80843582-80843601 | MS.gene75135:CDS | 35.0% |
| !!! | GTTCTGTAGCTGCTATTTTT+TGG | + | chr1.1:80844474-80844493 | None:intergenic | 35.0% |
| !!! | TTTTTTTCCCAAAGGACTTG+TGG | - | chr1.1:80844534-80844553 | MS.gene75135:intron | 35.0% |
| AAAGATCTTGCGAAGCTTGA+TGG | - | chr1.1:80844761-80844780 | MS.gene75135:intron | 40.0% | |
| ATTCTTAGACCTGACAAGGT+GGG | - | chr1.1:80843885-80843904 | MS.gene75135:CDS | 40.0% | |
| CAGCACGAATACTACAGTAT+CGG | - | chr1.1:80843571-80843590 | MS.gene75135:CDS | 40.0% | |
| CCGTAGCCATAAAGTAGTAA+TGG | + | chr1.1:80844794-80844813 | None:intergenic | 40.0% | |
| CCGTATATCCGATAACCAAA+AGG | - | chr1.1:80843465-80843484 | MS.gene75135:intron | 40.0% | |
| GAACATAACTCAAGGAAACG+AGG | + | chr1.1:80844601-80844620 | None:intergenic | 40.0% | |
| GAACGATCATGAAGAGCTTA+TGG | - | chr1.1:80842959-80842978 | MS.gene75135:intron | 40.0% | |
| TATTCTTAGACCTGACAAGG+TGG | - | chr1.1:80843884-80843903 | MS.gene75135:CDS | 40.0% | |
| TCCAAAATAACATGCTCAGG+AGG | + | chr1.1:80843532-80843551 | None:intergenic | 40.0% | |
| TCCTATTGTTCTCAGGTTCT+CGG | - | chr1.1:80844650-80844669 | MS.gene75135:intron | 40.0% | |
| TGAATATGCGAGAAGACGTT+AGG | + | chr1.1:80844115-80844134 | None:intergenic | 40.0% | |
| TTTCAATCTGCAACCGAAAC+TGG | - | chr1.1:80844265-80844284 | MS.gene75135:intron | 40.0% | |
| TTTGATGTTACACTGGCAAG+AGG | + | chr1.1:80843816-80843835 | None:intergenic | 40.0% | |
| ! | ATGACTGTAACATGCTGACT+AGG | - | chr1.1:80843246-80843265 | MS.gene75135:intron | 40.0% |
| ! | CAAGCTTCGCAAGATCTTTT+CGG | + | chr1.1:80844760-80844779 | None:intergenic | 40.0% |
| ! | TTCTAGAAGCTGAACCAGTT+CGG | + | chr1.1:80842754-80842773 | None:intergenic | 40.0% |
| !! | TCCTCCTGAGCATGTTATTT+TGG | - | chr1.1:80843528-80843547 | MS.gene75135:CDS | 40.0% |
| AATACGTCACTGAAAGGCAG+TGG | - | chr1.1:80844690-80844709 | MS.gene75135:intron | 45.0% | |
| ACATCAAACCTTGAATGGGC+TGG | - | chr1.1:80843828-80843847 | MS.gene75135:CDS | 45.0% | |
| ATAACTGCACCTGTACGCAA+AGG | - | chr1.1:80843382-80843401 | MS.gene75135:intron | 45.0% | |
| ATACGTCACTGAAAGGCAGT+GGG | - | chr1.1:80844691-80844710 | MS.gene75135:intron | 45.0% | |
| ATCGAGACTCAAGCTGCAAT+TGG | - | chr1.1:80843786-80843805 | MS.gene75135:intron | 45.0% | |
| CTCACAAATGAACTCGCCAA+TGG | - | chr1.1:80842818-80842837 | MS.gene75135:intron | 45.0% | |
| CTCGCATATTCAAAGCCCTT+GGG | - | chr1.1:80844123-80844142 | MS.gene75135:intron | 45.0% | |
| GATACCTGACATGACCGAAT+CGG | + | chr1.1:80842583-80842602 | None:intergenic | 45.0% | |
| GCAGCTACAGAACAGAATGA+AGG | - | chr1.1:80844481-80844500 | MS.gene75135:intron | 45.0% | |
| GCATATGCAGAAGACACCAA+AGG | - | chr1.1:80843732-80843751 | MS.gene75135:intron | 45.0% | |
| GTTAATGACACCATGCCTAC+AGG | - | chr1.1:80843496-80843515 | MS.gene75135:CDS | 45.0% | |
| TAACTGCACCTGTACGCAAA+GGG | - | chr1.1:80843383-80843402 | MS.gene75135:intron | 45.0% | |
| TAATACGACCCTTTGCGTAC+AGG | + | chr1.1:80843394-80843413 | None:intergenic | 45.0% | |
| TATTGTTCTCAGGTTCTCGG+AGG | - | chr1.1:80844653-80844672 | MS.gene75135:intron | 45.0% | |
| TCAGAATTTCCGAACCGAAC+TGG | - | chr1.1:80842737-80842756 | MS.gene75135:intron | 45.0% | |
| TCCGAGAACCTGAGAACAAT+AGG | + | chr1.1:80844654-80844673 | None:intergenic | 45.0% | |
| TCTCGCATATTCAAAGCCCT+TGG | - | chr1.1:80844122-80844141 | MS.gene75135:intron | 45.0% | |
| !! | GGCATGGTGTCATTAACAGA+TGG | + | chr1.1:80843493-80843512 | None:intergenic | 45.0% |
| !!! | ATTTTAAATAAAATAAAAAC+AGG | + | chr1.1:80843673-80843692 | None:intergenic | 5.0% |
| !!! | TTAAGATTTTTTTTTAATTA+AGG | + | chr1.1:80844369-80844388 | None:intergenic | 5.0% |
| !!! | TTTTAAATAAAATAAAAACA+GGG | + | chr1.1:80843672-80843691 | None:intergenic | 5.0% |
| GAAGCTGAACCAGTTCGGTT+CGG | + | chr1.1:80842749-80842768 | None:intergenic | 50.0% | |
| GGAGAATTTCCCACCTTGTC+AGG | + | chr1.1:80843897-80843916 | None:intergenic | 50.0% | |
| TCACAGTGTTGCAAGTTGCG+TGG | + | chr1.1:80842685-80842704 | None:intergenic | 50.0% | |
| !! | TACACCGATTCGGTCATGTC+AGG | - | chr1.1:80842576-80842595 | MS.gene75135:CDS | 50.0% |
| !! | TCAAACCTTGAATGGGCTGG+TGG | - | chr1.1:80843831-80843850 | MS.gene75135:CDS | 50.0% |
| AGCATCAGGTCCTGTAGGCA+TGG | + | chr1.1:80843509-80843528 | None:intergenic | 55.0% | |
| CAGTGGGCACATGCTTCAGA+TGG | - | chr1.1:80844707-80844726 | MS.gene75135:intron | 55.0% | |
| CATCACCACCAGCCCATTCA+AGG | + | chr1.1:80843839-80843858 | None:intergenic | 55.0% | |
| !! | ACATGCTCAGGAGGAGCATC+AGG | + | chr1.1:80843523-80843542 | None:intergenic | 55.0% |
| !! | GGAGGAGCATCAGGTCCTGT+AGG | + | chr1.1:80843514-80843533 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 80842571 | 80844820 | 80842571 | ID=MS.gene75135 |
| chr1.1 | mRNA | 80842571 | 80844820 | 80842571 | ID=MS.gene75135.t1;Parent=MS.gene75135 |
| chr1.1 | exon | 80844794 | 80844820 | 80844794 | ID=MS.gene75135.t1.exon1;Parent=MS.gene75135.t1 |
| chr1.1 | CDS | 80844794 | 80844820 | 80844794 | ID=cds.MS.gene75135.t1;Parent=MS.gene75135.t1 |
| chr1.1 | exon | 80843788 | 80844018 | 80843788 | ID=MS.gene75135.t1.exon2;Parent=MS.gene75135.t1 |
| chr1.1 | CDS | 80843788 | 80844018 | 80843788 | ID=cds.MS.gene75135.t1;Parent=MS.gene75135.t1 |
| chr1.1 | exon | 80843489 | 80843683 | 80843489 | ID=MS.gene75135.t1.exon3;Parent=MS.gene75135.t1 |
| chr1.1 | CDS | 80843489 | 80843683 | 80843489 | ID=cds.MS.gene75135.t1;Parent=MS.gene75135.t1 |
| chr1.1 | exon | 80842571 | 80842726 | 80842571 | ID=MS.gene75135.t1.exon4;Parent=MS.gene75135.t1 |
| chr1.1 | CDS | 80842571 | 80842726 | 80842571 | ID=cds.MS.gene75135.t1;Parent=MS.gene75135.t1 |
| Gene Sequence |
| Protein sequence |