Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75137.t1 | XP_013470415.1 | 84.8 | 343 | 35 | 4 | 1 | 333 | 1 | 336 | 7.60E-142 | 513.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75137.t1 | Q9SKB6 | 73.6 | 235 | 60 | 1 | 93 | 325 | 109 | 343 | 3.9e-86 | 319.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75137.t1 | A0A072VSR3 | 84.8 | 343 | 35 | 4 | 1 | 333 | 1 | 336 | 5.5e-142 | 513.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052188 | MS.gene75137 | 0.82294 | 1.81E-53 | -1.69E-46 |
| MS.gene05602 | MS.gene75137 | 0.808946 | 2.41E-50 | -1.69E-46 |
| MS.gene056659 | MS.gene75137 | 0.801337 | 9.44E-49 | -1.69E-46 |
| MS.gene057749 | MS.gene75137 | 0.812789 | 3.55E-51 | -1.69E-46 |
| MS.gene057823 | MS.gene75137 | 0.820774 | 5.74E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75137.t1 | MTR_1g115235 | 88.630 | 343 | 22 | 4 | 1 | 333 | 1 | 336 | 0.0 | 556 |
| MS.gene75137.t1 | MTR_1g115235 | 86.711 | 301 | 23 | 4 | 1 | 291 | 1 | 294 | 1.05e-165 | 464 |
| MS.gene75137.t1 | MTR_1g115235 | 76.974 | 304 | 45 | 7 | 1 | 291 | 1 | 292 | 4.68e-137 | 391 |
| MS.gene75137.t1 | MTR_8g086060 | 37.500 | 184 | 98 | 6 | 132 | 312 | 172 | 341 | 2.17e-32 | 124 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75137.t1 | AT2G31840 | 71.064 | 235 | 66 | 1 | 93 | 325 | 109 | 343 | 2.19e-114 | 335 |
| MS.gene75137.t1 | AT2G31840 | 71.064 | 235 | 66 | 1 | 93 | 325 | 109 | 343 | 2.19e-114 | 335 |
| MS.gene75137.t1 | AT4G28590 | 39.106 | 179 | 92 | 6 | 139 | 314 | 158 | 322 | 6.38e-35 | 130 |
Find 65 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTCAAACCCCACTTTAC+AGG | 0.236764 | 1.1:-80864627 | MS.gene75137:CDS |
| GCAGCCTTCATGTCTTTAAT+AGG | 0.271223 | 1.1:+80864146 | None:intergenic |
| TCAGCATCTTGAGGCCAATT+AGG | 0.323877 | 1.1:+80864311 | None:intergenic |
| GCCTCAAGATGCTGATGGTT+GGG | 0.347115 | 1.1:-80864303 | MS.gene75137:CDS |
| GAAGTTATCTTTACTAAAGC+AGG | 0.362361 | 1.1:-80861851 | MS.gene75137:CDS |
| TGATTGAACTCTTGTTAGTT+TGG | 0.367683 | 1.1:+80864595 | None:intergenic |
| TTGTCCACAATCGTTATAGA+AGG | 0.369198 | 1.1:-80864076 | MS.gene75137:intron |
| TCACTCAAATCTGATGGTTC+TGG | 0.371232 | 1.1:-80864575 | MS.gene75137:CDS |
| GACTAACATTCCAGATTTCC+AGG | 0.377669 | 1.1:-80861624 | MS.gene75137:CDS |
| GCTTTAGTAAAGATAACTTC+TGG | 0.387977 | 1.1:+80861854 | None:intergenic |
| GTTGTAAAGAGAAAATGAAT+TGG | 0.401953 | 1.1:+80864673 | None:intergenic |
| TTGTAAAGAGAAAATGAATT+GGG | 0.405487 | 1.1:+80864674 | None:intergenic |
| TTTACAACAAACTCTTCAAC+CGG | 0.424293 | 1.1:-80864658 | MS.gene75137:CDS |
| GTTAGTCAAACACGATGGTT+TGG | 0.445608 | 1.1:+80861640 | None:intergenic |
| TGGAAGAGGAGGATCCTAAT+TGG | 0.447524 | 1.1:-80864325 | MS.gene75137:CDS |
| CTTTAGTAAAGATAACTTCT+GGG | 0.455068 | 1.1:+80861855 | None:intergenic |
| TCAGAACACTGGATTGTCAA+TGG | 0.456395 | 1.1:+80861583 | None:intergenic |
| AGAAGGCTGTGCATATCATA+TGG | 0.459941 | 1.1:-80862073 | MS.gene75137:CDS |
| AGACATGAAGGCTGCTGAAT+GGG | 0.460094 | 1.1:-80864138 | MS.gene75137:CDS |
| TCTTCAAGAGACATAACATA+AGG | 0.460526 | 1.1:+80864473 | None:intergenic |
| TAAAGTGGGGTTTGAGAAAA+GGG | 0.468151 | 1.1:+80864631 | None:intergenic |
| GTAAAGTGGGGTTTGAGAAA+AGG | 0.470216 | 1.1:+80864630 | None:intergenic |
| CCTCAAGATGCTGATGGTTG+GGG | 0.471802 | 1.1:-80864302 | MS.gene75137:CDS |
| GGTTTGAGAAAAGGGTCTTC+CGG | 0.471829 | 1.1:+80864639 | None:intergenic |
| ATTGTGGACAAGAATAATCA+AGG | 0.499873 | 1.1:+80864088 | None:intergenic |
| AAGACATGAAGGCTGCTGAA+TGG | 0.504100 | 1.1:-80864139 | MS.gene75137:CDS |
| TTACCAACTTGTTGTGGAAG+AGG | 0.507121 | 1.1:-80864339 | MS.gene75137:CDS |
| GATGGTTGGGGATTCAGCCT+TGG | 0.507224 | 1.1:-80864290 | MS.gene75137:CDS |
| CTTCAAGAGACATAACATAA+GGG | 0.510035 | 1.1:+80864474 | None:intergenic |
| AGTTGCTGCACTTAAAGTAT+CGG | 0.515906 | 1.1:-80861882 | MS.gene75137:CDS |
| TTATCATCTTGCCACACTAT+CGG | 0.517607 | 1.1:+80864179 | None:intergenic |
| TCTACAACTTCTTGAACTTG+AGG | 0.519587 | 1.1:+80864404 | None:intergenic |
| TAATGATTACCAACTTGTTG+TGG | 0.520440 | 1.1:-80864345 | MS.gene75137:CDS |
| GAATCACTAACCTGTAAAGT+GGG | 0.521576 | 1.1:+80864617 | None:intergenic |
| ATCAACATCATCATCGTCCT+CGG | 0.529273 | 1.1:+80864211 | None:intergenic |
| AACACGATGGTTTGGCTCCA+CGG | 0.534700 | 1.1:+80861648 | None:intergenic |
| GGAATCACTAACCTGTAAAG+TGG | 0.538509 | 1.1:+80864616 | None:intergenic |
| GGCCTCAAGATGCTGATGGT+TGG | 0.550479 | 1.1:-80864304 | MS.gene75137:CDS |
| CAAACCTTCTATAACGATTG+TGG | 0.550589 | 1.1:+80864072 | None:intergenic |
| TTTATTACTTACTCTTGGTG+AGG | 0.554532 | 1.1:+80862037 | None:intergenic |
| TCAAATCTGATGGTTCTGGT+TGG | 0.565426 | 1.1:-80864571 | MS.gene75137:CDS |
| TTATTACTTACTCTTGGTGA+GGG | 0.566848 | 1.1:+80862038 | None:intergenic |
| GTTCAATCACTCAAATCTGA+TGG | 0.569587 | 1.1:-80864581 | MS.gene75137:CDS |
| CCTCCTCTTCCACAACAAGT+TGG | 0.573358 | 1.1:+80864336 | None:intergenic |
| GGTTCTGGTTGGAAGAAAAG+AGG | 0.577172 | 1.1:-80864560 | MS.gene75137:CDS |
| GGATTGTCAATGGTAAAAGA+AGG | 0.585441 | 1.1:+80861593 | None:intergenic |
| TCGTCCTATTAAAGACATGA+AGG | 0.589532 | 1.1:-80864150 | MS.gene75137:CDS |
| CCAACTTGTTGTGGAAGAGG+AGG | 0.593627 | 1.1:-80864336 | MS.gene75137:CDS |
| AATTCGAGAAGAACTAGAGA+AGG | 0.595768 | 1.1:-80862090 | MS.gene75137:CDS |
| AAGTTATCTTTACTAAAGCA+GGG | 0.597570 | 1.1:-80861850 | MS.gene75137:CDS |
| AATTGGCCTCAAGATGCTGA+TGG | 0.603896 | 1.1:-80864308 | MS.gene75137:CDS |
| CATGAAGGCTGCTGAATGGG+AGG | 0.605185 | 1.1:-80864135 | MS.gene75137:CDS |
| CTCTTGAAGAGAGACAAGAA+TGG | 0.610559 | 1.1:-80864460 | MS.gene75137:CDS |
| ATATGTTTCATTGATGACAG+TGG | 0.611526 | 1.1:+80864713 | None:intergenic |
| GGAAGATAATGATGATGCCG+AGG | 0.624630 | 1.1:-80864228 | MS.gene75137:CDS |
| CCCCAACCATCAGCATCTTG+AGG | 0.632853 | 1.1:+80864302 | None:intergenic |
| TTGTGGACAAGAATAATCAA+GGG | 0.634415 | 1.1:+80864089 | None:intergenic |
| ACAGATCAATACCTTTATCA+CGG | 0.653404 | 1.1:+80861816 | None:intergenic |
| CAATTCGCAGTGCAGATGAG+TGG | 0.653894 | 1.1:-80861697 | MS.gene75137:CDS |
| CAGTGGCAAATTGAGTGCCA+TGG | 0.668004 | 1.1:+80864730 | None:intergenic |
| AATCACTAACCTGTAAAGTG+GGG | 0.668201 | 1.1:+80864618 | None:intergenic |
| TGATAGCGACGACGATGACG+AGG | 0.679731 | 1.1:-80864513 | MS.gene75137:CDS |
| ATGATGATAAGCCGATAGTG+TGG | 0.713878 | 1.1:-80864190 | MS.gene75137:CDS |
| GGAATGTTAGTCAAACACGA+TGG | 0.721819 | 1.1:+80861635 | None:intergenic |
| TCAAGAAGTTGTAGACACCG+AGG | 0.738091 | 1.1:-80864396 | MS.gene75137:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATAAAAAAAACAATAGTTT+TGG | + | chr1.1:80862313-80862332 | None:intergenic | 15.0% |
| !!! | TAAGAAAAGATTCTTTTTTT+AGG | - | chr1.1:80863517-80863536 | MS.gene75137:intron | 15.0% |
| !! | AACTAAACTAAATCAAGAAA+AGG | + | chr1.1:80863695-80863714 | None:intergenic | 20.0% |
| !! | TACAATACAAAACAAAAAGA+AGG | - | chr1.1:80862062-80862081 | MS.gene75137:CDS | 20.0% |
| !! | TAGAATACAATGCATATATA+TGG | - | chr1.1:80863802-80863821 | MS.gene75137:intron | 20.0% |
| !! | TGTGATATAAGAAGAAAAAA+AGG | + | chr1.1:80863663-80863682 | None:intergenic | 20.0% |
| !! | TTGTAAAGAGAAAATGAATT+GGG | + | chr1.1:80861640-80861659 | None:intergenic | 20.0% |
| !!! | ACATTTTCACTTTTATTCTT+AGG | - | chr1.1:80864181-80864200 | MS.gene75137:CDS | 20.0% |
| !!! | CATTGTATCTTTTTTGAAAT+GGG | - | chr1.1:80864008-80864027 | MS.gene75137:intron | 20.0% |
| !!! | CTTTTACTGAATTTTGTATT+TGG | + | chr1.1:80864523-80864542 | None:intergenic | 20.0% |
| !!! | TCATTGTATCTTTTTTGAAA+TGG | - | chr1.1:80864007-80864026 | MS.gene75137:intron | 20.0% |
| !!! | TCTAATTTCAAAAGCATATT+AGG | + | chr1.1:80864111-80864130 | None:intergenic | 20.0% |
| ! | AACAAGCTAAGCTAAAAATA+TGG | + | chr1.1:80863414-80863433 | None:intergenic | 25.0% |
| ! | AAGTTATCTTTACTAAAGCA+GGG | - | chr1.1:80864461-80864480 | MS.gene75137:CDS | 25.0% |
| ! | AGTTATTGCAGAGTATATTT+AGG | - | chr1.1:80862752-80862771 | MS.gene75137:intron | 25.0% |
| ! | ATGACTTTATTACTTACTCT+TGG | + | chr1.1:80864282-80864301 | None:intergenic | 25.0% |
| ! | CTTTAGTAAAGATAACTTCT+GGG | + | chr1.1:80864459-80864478 | None:intergenic | 25.0% |
| ! | GTTAGTCGATTATCAATTAA+TGG | - | chr1.1:80862370-80862389 | MS.gene75137:intron | 25.0% |
| ! | GTTGTAAAGAGAAAATGAAT+TGG | + | chr1.1:80861641-80861660 | None:intergenic | 25.0% |
| ! | TAAAAGTGAAAATGTTAGAC+AGG | + | chr1.1:80864176-80864195 | None:intergenic | 25.0% |
| !! | AAGATTTTATACCGTGATAA+AGG | - | chr1.1:80864484-80864503 | MS.gene75137:CDS | 25.0% |
| !! | ATGTATGATACGATTTTCAA+TGG | - | chr1.1:80863591-80863610 | MS.gene75137:intron | 25.0% |
| !! | CTAAGCTAAAAATATGGTTT+TGG | + | chr1.1:80863408-80863427 | None:intergenic | 25.0% |
| !! | TATAATGATATGAAAGTGTG+TGG | - | chr1.1:80864378-80864397 | MS.gene75137:CDS | 25.0% |
| !! | TCTTTTCTTATATATGAGAC+CGG | + | chr1.1:80863507-80863526 | None:intergenic | 25.0% |
| !! | TTATCTACCTCTATTTTACT+AGG | - | chr1.1:80863299-80863318 | MS.gene75137:intron | 25.0% |
| AAGAAAAATCAGACAGGTTA+TGG | - | chr1.1:80861876-80861895 | MS.gene75137:CDS | 30.0% | |
| AAGTCATACAATCATTCCTT+TGG | - | chr1.1:80864295-80864314 | MS.gene75137:CDS | 30.0% | |
| ACAGATCAATACCTTTATCA+CGG | + | chr1.1:80864498-80864517 | None:intergenic | 30.0% | |
| ATGGATTTCTATCATGATTC+AGG | - | chr1.1:80863821-80863840 | MS.gene75137:intron | 30.0% | |
| ATTGTGGACAAGAATAATCA+AGG | + | chr1.1:80862226-80862245 | None:intergenic | 30.0% | |
| CTGAAAACCATAGTTCTTTA+AGG | + | chr1.1:80862913-80862932 | None:intergenic | 30.0% | |
| CTTCAAGAGACATAACATAA+GGG | + | chr1.1:80861840-80861859 | None:intergenic | 30.0% | |
| GAAGTTATCTTTACTAAAGC+AGG | - | chr1.1:80864460-80864479 | MS.gene75137:CDS | 30.0% | |
| GATAAAATAGCTGAAACCAA+AGG | + | chr1.1:80864314-80864333 | None:intergenic | 30.0% | |
| GATGGAGACGAATAAATAAA+TGG | + | chr1.1:80864559-80864578 | None:intergenic | 30.0% | |
| GCTTTAGTAAAGATAACTTC+TGG | + | chr1.1:80864460-80864479 | None:intergenic | 30.0% | |
| GTACTAGCTGTCATATAATT+AGG | - | chr1.1:80862712-80862731 | MS.gene75137:intron | 30.0% | |
| TCAAGTCATCAACATAAACT+AGG | + | chr1.1:80862996-80863015 | None:intergenic | 30.0% | |
| TCTTCAAGAGACATAACATA+AGG | + | chr1.1:80861841-80861860 | None:intergenic | 30.0% | |
| TGATTGAACTCTTGTTAGTT+TGG | + | chr1.1:80861719-80861738 | None:intergenic | 30.0% | |
| TTATTACTTACTCTTGGTGA+GGG | + | chr1.1:80864276-80864295 | None:intergenic | 30.0% | |
| TTCCACCTGTTTATATACAT+GGG | - | chr1.1:80862583-80862602 | MS.gene75137:intron | 30.0% | |
| TTGTGGACAAGAATAATCAA+GGG | + | chr1.1:80862225-80862244 | None:intergenic | 30.0% | |
| TTTACAACAAACTCTTCAAC+CGG | - | chr1.1:80861653-80861672 | MS.gene75137:CDS | 30.0% | |
| TTTATTACTTACTCTTGGTG+AGG | + | chr1.1:80864277-80864296 | None:intergenic | 30.0% | |
| TTTCCACCTGTTTATATACA+TGG | - | chr1.1:80862582-80862601 | MS.gene75137:intron | 30.0% | |
| ! | AATGTTAGACAGGATTGTTT+TGG | + | chr1.1:80864166-80864185 | None:intergenic | 30.0% |
| ! | ACGATTTTCAATGGTCATTT+TGG | - | chr1.1:80863600-80863619 | MS.gene75137:intron | 30.0% |
| ! | AGCATATACCTTTTCATACA+TGG | - | chr1.1:80862846-80862865 | MS.gene75137:intron | 30.0% |
| ! | ATATGTTTCATTGATGACAG+TGG | + | chr1.1:80861601-80861620 | None:intergenic | 30.0% |
| ! | ATGTTTTCATAAGAAGGACT+TGG | - | chr1.1:80863071-80863090 | MS.gene75137:intron | 30.0% |
| ! | CATTTTCTTCTTCTTTTCCT+CGG | + | chr1.1:80861935-80861954 | None:intergenic | 30.0% |
| ! | GAACACATGTTTTCATAAGA+AGG | - | chr1.1:80863065-80863084 | MS.gene75137:intron | 30.0% |
| ! | TAAAAGAAGGAATGTTTTCC+TGG | + | chr1.1:80864708-80864727 | None:intergenic | 30.0% |
| ! | TGTTTTCATAAGAAGGACTT+GGG | - | chr1.1:80863072-80863091 | MS.gene75137:intron | 30.0% |
| ! | TTATCAATTAATGGCCGTTT+TGG | - | chr1.1:80862379-80862398 | MS.gene75137:intron | 30.0% |
| ! | TTCTGAGAGAATAAGAGATT+TGG | - | chr1.1:80863773-80863792 | MS.gene75137:intron | 30.0% |
| !! | AATTTTAGCACTCACATAAG+AGG | - | chr1.1:80862680-80862699 | MS.gene75137:intron | 30.0% |
| !! | ACATAAGGGTCATTTTCTTT+CGG | + | chr1.1:80861826-80861845 | None:intergenic | 30.0% |
| !! | CAGCTATTTTATCACAAAGT+TGG | - | chr1.1:80864321-80864340 | MS.gene75137:CDS | 30.0% |
| !! | TAATGATTACCAACTTGTTG+TGG | - | chr1.1:80861966-80861985 | MS.gene75137:intron | 30.0% |
| !! | TGACTGAGTTGTTTGTTATT+TGG | - | chr1.1:80862409-80862428 | MS.gene75137:intron | 30.0% |
| !!! | CGAATTTTTTCATTGTCCTT+TGG | + | chr1.1:80864207-80864226 | None:intergenic | 30.0% |
| !!! | GGTGTCTTGAAGTATTTTTT+GGG | - | chr1.1:80863093-80863112 | MS.gene75137:intron | 30.0% |
| !!! | TTAGCTTGTTTTAGTCTAAG+TGG | - | chr1.1:80863424-80863443 | MS.gene75137:intron | 30.0% |
| AAGTAAAATTGAACACCACC+AGG | + | chr1.1:80864036-80864055 | None:intergenic | 35.0% | |
| AATCACTAACCTGTAAAGTG+GGG | + | chr1.1:80861696-80861715 | None:intergenic | 35.0% | |
| AATTCGAGAAGAACTAGAGA+AGG | - | chr1.1:80864221-80864240 | MS.gene75137:CDS | 35.0% | |
| AGAGTATATTTAGGCCTAGA+TGG | - | chr1.1:80862761-80862780 | MS.gene75137:intron | 35.0% | |
| AGATGAGTGGTCAAAAATCA+TGG | - | chr1.1:80864627-80864646 | MS.gene75137:CDS | 35.0% | |
| AGCTTATGATTCTGCTTCAT+AGG | + | chr1.1:80863217-80863236 | None:intergenic | 35.0% | |
| AGTCTCCCATGTATATAAAC+AGG | + | chr1.1:80862591-80862610 | None:intergenic | 35.0% | |
| AGTTGCTGCACTTAAAGTAT+CGG | - | chr1.1:80864429-80864448 | MS.gene75137:CDS | 35.0% | |
| ATAAACAGGTGGAAATCAAC+AGG | + | chr1.1:80862577-80862596 | None:intergenic | 35.0% | |
| ATCACTACTATAGCCAAATG+CGG | + | chr1.1:80864082-80864101 | None:intergenic | 35.0% | |
| ATGGAGAAGAAAAATCAGAC+AGG | - | chr1.1:80861870-80861889 | MS.gene75137:CDS | 35.0% | |
| CAAACCTTCTATAACGATTG+TGG | + | chr1.1:80862242-80862261 | None:intergenic | 35.0% | |
| CACCAAATAGAAATTCGTCA+TGG | + | chr1.1:80864585-80864604 | None:intergenic | 35.0% | |
| CACTCACATAAGAGGTAATT+AGG | - | chr1.1:80862688-80862707 | MS.gene75137:intron | 35.0% | |
| CATGACGAATTTCTATTTGG+TGG | - | chr1.1:80864583-80864602 | MS.gene75137:CDS | 35.0% | |
| CTCACTTTGCACACATAAAA+AGG | + | chr1.1:80863731-80863750 | None:intergenic | 35.0% | |
| CTCTGATACCATGTATGAAA+AGG | + | chr1.1:80862857-80862876 | None:intergenic | 35.0% | |
| CTTGCAATATCACACAATTG+TGG | - | chr1.1:80862969-80862988 | MS.gene75137:intron | 35.0% | |
| GAAATGATCCAGTAGCTATA+TGG | - | chr1.1:80863025-80863044 | MS.gene75137:intron | 35.0% | |
| GAACAAGGAGTAGTCAAAAT+AGG | + | chr1.1:80862940-80862959 | None:intergenic | 35.0% | |
| GAATCACTAACCTGTAAAGT+GGG | + | chr1.1:80861697-80861716 | None:intergenic | 35.0% | |
| GACCATGACGAATTTCTATT+TGG | - | chr1.1:80864580-80864599 | MS.gene75137:CDS | 35.0% | |
| GCTTGACTGTAAACATGATA+TGG | + | chr1.1:80864139-80864158 | None:intergenic | 35.0% | |
| GGATTGTCAATGGTAAAAGA+AGG | + | chr1.1:80864721-80864740 | None:intergenic | 35.0% | |
| GTTCAATCACTCAAATCTGA+TGG | - | chr1.1:80861730-80861749 | MS.gene75137:intron | 35.0% | |
| TAAAGTGGGGTTTGAGAAAA+GGG | + | chr1.1:80861683-80861702 | None:intergenic | 35.0% | |
| TATACATGGGAGACTATTAG+CGG | - | chr1.1:80862596-80862615 | MS.gene75137:intron | 35.0% | |
| TCGTCCTATTAAAGACATGA+AGG | - | chr1.1:80862161-80862180 | MS.gene75137:intron | 35.0% | |
| TCTACAACTTCTTGAACTTG+AGG | + | chr1.1:80861910-80861929 | None:intergenic | 35.0% | |
| TTATCATCTTGCCACACTAT+CGG | + | chr1.1:80862135-80862154 | None:intergenic | 35.0% | |
| TTCACTTTCCATATAGCTAC+TGG | + | chr1.1:80863036-80863055 | None:intergenic | 35.0% | |
| TTCAGACAGAATTAGAGATC+TGG | - | chr1.1:80862534-80862553 | MS.gene75137:intron | 35.0% | |
| TTCTTATATATGAGACCGGA+GGG | + | chr1.1:80863503-80863522 | None:intergenic | 35.0% | |
| TTGTCCACAATCGTTATAGA+AGG | - | chr1.1:80862235-80862254 | MS.gene75137:intron | 35.0% | |
| TTTCTTATATATGAGACCGG+AGG | + | chr1.1:80863504-80863523 | None:intergenic | 35.0% | |
| ! | CACTTTTATTCTTAGGCCAA+AGG | - | chr1.1:80864188-80864207 | MS.gene75137:CDS | 35.0% |
| !!! | ATGGCATTTTTTTACTACCG+TGG | - | chr1.1:80864646-80864665 | MS.gene75137:CDS | 35.0% |
| !!! | GAAGTATTTTTTGGGTGTCA+AGG | - | chr1.1:80863101-80863120 | MS.gene75137:intron | 35.0% |
| !!! | GGGTGTCTTGAAGTATTTTT+TGG | - | chr1.1:80863092-80863111 | MS.gene75137:intron | 35.0% |
| ACCAATTGTCAATGTCGTTC+AGG | + | chr1.1:80863271-80863290 | None:intergenic | 40.0% | |
| ACCTGAACGACATTGACAAT+TGG | - | chr1.1:80863267-80863286 | MS.gene75137:intron | 40.0% | |
| AGAAATTCGTCATGGTCAGA+TGG | + | chr1.1:80864577-80864596 | None:intergenic | 40.0% | |
| AGAAGGCTGTGCATATCATA+TGG | - | chr1.1:80864238-80864257 | MS.gene75137:CDS | 40.0% | |
| AGCGGACAATTAGGTGTATT+TGG | - | chr1.1:80862614-80862633 | MS.gene75137:intron | 40.0% | |
| AGTAGATTGCTAGTTGTAGC+TGG | - | chr1.1:80863637-80863656 | MS.gene75137:intron | 40.0% | |
| AGTCTCTCATGTATACACAC+AGG | + | chr1.1:80863856-80863875 | None:intergenic | 40.0% | |
| AGTTTGGAAAACCAACACCT+AGG | + | chr1.1:80862882-80862901 | None:intergenic | 40.0% | |
| ATCAACATCATCATCGTCCT+CGG | + | chr1.1:80862103-80862122 | None:intergenic | 40.0% | |
| ATGATGATAAGCCGATAGTG+TGG | - | chr1.1:80862121-80862140 | MS.gene75137:intron | 40.0% | |
| ATTCATGCAACAACCGACAA+TGG | - | chr1.1:80863355-80863374 | MS.gene75137:intron | 40.0% | |
| ATTCTTGAGACTGGGATTCT+AGG | - | chr1.1:80863172-80863191 | MS.gene75137:intron | 40.0% | |
| ATTGTCAATGTCGTTCAGGT+TGG | + | chr1.1:80863267-80863286 | None:intergenic | 40.0% | |
| CATGTATACACACAGGTTCT+TGG | + | chr1.1:80863849-80863868 | None:intergenic | 40.0% | |
| CCTAGATGGAGTGATGTATT+CGG | - | chr1.1:80862775-80862794 | MS.gene75137:intron | 40.0% | |
| CTAAGTGGCTGAATGCTAAT+TGG | - | chr1.1:80863439-80863458 | MS.gene75137:intron | 40.0% | |
| CTAGATGGAGTGATGTATTC+GGG | - | chr1.1:80862776-80862795 | MS.gene75137:intron | 40.0% | |
| CTCCCATGTATATAAACAGG+TGG | + | chr1.1:80862588-80862607 | None:intergenic | 40.0% | |
| CTCTTGAAGAGAGACAAGAA+TGG | - | chr1.1:80861851-80861870 | MS.gene75137:CDS | 40.0% | |
| GACTAACATTCCAGATTTCC+AGG | - | chr1.1:80864687-80864706 | MS.gene75137:CDS | 40.0% | |
| GCAGCCTTCATGTCTTTAAT+AGG | + | chr1.1:80862168-80862187 | None:intergenic | 40.0% | |
| GCGGAAGTTATTTGCACATA+AGG | + | chr1.1:80864063-80864082 | None:intergenic | 40.0% | |
| GCTACAACTAGCAATCTACT+CGG | + | chr1.1:80863637-80863656 | None:intergenic | 40.0% | |
| GCTCTAGCCTAGTAAAATAG+AGG | + | chr1.1:80863309-80863328 | None:intergenic | 40.0% | |
| GGAATCACTAACCTGTAAAG+TGG | + | chr1.1:80861698-80861717 | None:intergenic | 40.0% | |
| GGAATGTTAGTCAAACACGA+TGG | + | chr1.1:80864679-80864698 | None:intergenic | 40.0% | |
| GTAAAGTGGGGTTTGAGAAA+AGG | + | chr1.1:80861684-80861703 | None:intergenic | 40.0% | |
| GTGCAAATAACTTCCGCATT+TGG | - | chr1.1:80864066-80864085 | MS.gene75137:intron | 40.0% | |
| GTTAGTCAAACACGATGGTT+TGG | + | chr1.1:80864674-80864693 | None:intergenic | 40.0% | |
| GTTTGGAAAACCAACACCTA+GGG | + | chr1.1:80862881-80862900 | None:intergenic | 40.0% | |
| TAGATGGAGTGATGTATTCG+GGG | - | chr1.1:80862777-80862796 | MS.gene75137:intron | 40.0% | |
| TCACTCAAATCTGATGGTTC+TGG | - | chr1.1:80861736-80861755 | MS.gene75137:intron | 40.0% | |
| TCAGAACACTGGATTGTCAA+TGG | + | chr1.1:80864731-80864750 | None:intergenic | 40.0% | |
| TCAGTCAGAGTTCTCCAAAA+CGG | + | chr1.1:80862396-80862415 | None:intergenic | 40.0% | |
| TCTGCTGCCTTAAAGAACTA+TGG | - | chr1.1:80862903-80862922 | MS.gene75137:intron | 40.0% | |
| TCTTGTCGAAAAACTGTCCA+AGG | + | chr1.1:80862041-80862060 | None:intergenic | 40.0% | |
| TCTTTCCATTCAGCCTTCAA+TGG | + | chr1.1:80863382-80863401 | None:intergenic | 40.0% | |
| TGCAAGTTGCAACATGAACA+AGG | + | chr1.1:80862955-80862974 | None:intergenic | 40.0% | |
| TGCTTGAGTAAGTAGCTGAA+TGG | - | chr1.1:80862279-80862298 | MS.gene75137:intron | 40.0% | |
| TTGAAACTATCTACTCCCTC+CGG | - | chr1.1:80863485-80863504 | MS.gene75137:intron | 40.0% | |
| TTTCTCAAACCCCACTTTAC+AGG | - | chr1.1:80861684-80861703 | MS.gene75137:CDS | 40.0% | |
| TTTGGAAAACCAACACCTAG+GGG | + | chr1.1:80862880-80862899 | None:intergenic | 40.0% | |
| ! | GAGACTATTAGCGGACAATT+AGG | - | chr1.1:80862605-80862624 | MS.gene75137:intron | 40.0% |
| ! | GGAATGTTTTCCTGGAAATC+TGG | + | chr1.1:80864700-80864719 | None:intergenic | 40.0% |
| !! | GTTGATGACTTGATTGTCTC+AGG | - | chr1.1:80863003-80863022 | MS.gene75137:intron | 40.0% |
| !! | TCAAATCTGATGGTTCTGGT+TGG | - | chr1.1:80861740-80861759 | MS.gene75137:intron | 40.0% |
| !! | TTACCAACTTGTTGTGGAAG+AGG | - | chr1.1:80861972-80861991 | MS.gene75137:intron | 40.0% |
| !!! | TCTTTTTTGAAATGGGCTCC+TGG | - | chr1.1:80864015-80864034 | MS.gene75137:intron | 40.0% |
| AACCGACAATGGACCATTGA+AGG | - | chr1.1:80863366-80863385 | MS.gene75137:intron | 45.0% | |
| AAGACATGAAGGCTGCTGAA+TGG | - | chr1.1:80862172-80862191 | MS.gene75137:intron | 45.0% | |
| AGACATGAAGGCTGCTGAAT+GGG | - | chr1.1:80862173-80862192 | MS.gene75137:intron | 45.0% | |
| AGCCTTCAATGGTCCATTGT+CGG | + | chr1.1:80863371-80863390 | None:intergenic | 45.0% | |
| ATGGACCATTGAAGGCTGAA+TGG | - | chr1.1:80863374-80863393 | MS.gene75137:intron | 45.0% | |
| CATAAGCTTGCATTAGCCCA+GGG | - | chr1.1:80863229-80863248 | MS.gene75137:intron | 45.0% | |
| CATAGGCACACTAACAGGTT+AGG | + | chr1.1:80863200-80863219 | None:intergenic | 45.0% | |
| CCGAATACATCACTCCATCT+AGG | + | chr1.1:80862778-80862797 | None:intergenic | 45.0% | |
| GGAGGGAGTAGATAGTTTCA+AGG | + | chr1.1:80863486-80863505 | None:intergenic | 45.0% | |
| GGTTTGAGAAAAGGGTCTTC+CGG | + | chr1.1:80861675-80861694 | None:intergenic | 45.0% | |
| TCAAGAAGTTGTAGACACCG+AGG | - | chr1.1:80861915-80861934 | MS.gene75137:CDS | 45.0% | |
| TCAGCATCTTGAGGCCAATT+AGG | + | chr1.1:80862003-80862022 | None:intergenic | 45.0% | |
| TCATAAGCTTGCATTAGCCC+AGG | - | chr1.1:80863228-80863247 | MS.gene75137:intron | 45.0% | |
| TCGACGTCATTCTTGAGACT+GGG | - | chr1.1:80863164-80863183 | MS.gene75137:intron | 45.0% | |
| TGCTTCATAGGCACACTAAC+AGG | + | chr1.1:80863205-80863224 | None:intergenic | 45.0% | |
| TGGAAGAGGAGGATCCTAAT+TGG | - | chr1.1:80861986-80862005 | MS.gene75137:intron | 45.0% | |
| TGGGTGTCAAGGAATGCTAT+TGG | - | chr1.1:80863112-80863131 | MS.gene75137:intron | 45.0% | |
| TTGGTCAAGAAAAGGACCCT+GGG | + | chr1.1:80863248-80863267 | None:intergenic | 45.0% | |
| ! | AATGACGTCGAGAGCACATT+TGG | + | chr1.1:80863155-80863174 | None:intergenic | 45.0% |
| ! | AATTGGCCTCAAGATGCTGA+TGG | - | chr1.1:80862003-80862022 | MS.gene75137:intron | 45.0% |
| ! | ATGACGTCGAGAGCACATTT+GGG | + | chr1.1:80863154-80863173 | None:intergenic | 45.0% |
| ! | GGAAGATAATGATGATGCCG+AGG | - | chr1.1:80862083-80862102 | MS.gene75137:CDS | 45.0% |
| ! | GGTTCTGGTTGGAAGAAAAG+AGG | - | chr1.1:80861751-80861770 | MS.gene75137:intron | 45.0% |
| !! | CACACGCACGAGAAAGTATT+CGG | + | chr1.1:80862482-80862501 | None:intergenic | 45.0% |
| !! | CGTTCAGGTTGGTCAAGAAA+AGG | + | chr1.1:80863256-80863275 | None:intergenic | 45.0% |
| !! | CTTTAAGGCAGCAGAGAGTT+TGG | + | chr1.1:80862898-80862917 | None:intergenic | 45.0% |
| !!! | TTTTTGAAATGGGCTCCTGG+TGG | - | chr1.1:80864018-80864037 | MS.gene75137:intron | 45.0% |
| !! | ATATCATTATAATATATAAT+AGG | + | chr1.1:80864369-80864388 | None:intergenic | 5.0% |
| CAATTCGCAGTGCAGATGAG+TGG | - | chr1.1:80864614-80864633 | MS.gene75137:CDS | 50.0% | |
| CCTCAAGATGCTGATGGTTG+GGG | - | chr1.1:80862009-80862028 | MS.gene75137:intron | 50.0% | |
| CCTCCTCTTCCACAACAAGT+TGG | + | chr1.1:80861978-80861997 | None:intergenic | 50.0% | |
| CTCGACGTCATTCTTGAGAC+TGG | - | chr1.1:80863163-80863182 | MS.gene75137:intron | 50.0% | |
| GCCTCAAGATGCTGATGGTT+GGG | - | chr1.1:80862008-80862027 | MS.gene75137:intron | 50.0% | |
| GTTGGTCAAGAAAAGGACCC+TGG | + | chr1.1:80863249-80863268 | None:intergenic | 50.0% | |
| TACATGGTATCAGAGCCCCT+AGG | - | chr1.1:80862862-80862881 | MS.gene75137:intron | 50.0% | |
| ! | AACACGATGGTTTGGCTCCA+CGG | + | chr1.1:80864666-80864685 | None:intergenic | 50.0% |
| !! | CCAACTTGTTGTGGAAGAGG+AGG | - | chr1.1:80861975-80861994 | MS.gene75137:intron | 50.0% |
| CATGAAGGCTGCTGAATGGG+AGG | - | chr1.1:80862176-80862195 | MS.gene75137:intron | 55.0% | |
| CCCCAACCATCAGCATCTTG+AGG | + | chr1.1:80862012-80862031 | None:intergenic | 55.0% | |
| GATGGTTGGGGATTCAGCCT+TGG | - | chr1.1:80862021-80862040 | MS.gene75137:intron | 55.0% | |
| GGCCTCAAGATGCTGATGGT+TGG | - | chr1.1:80862007-80862026 | MS.gene75137:intron | 55.0% | |
| GTATCAGAGCCCCTAGGTGT+TGG | - | chr1.1:80862868-80862887 | MS.gene75137:intron | 55.0% | |
| ! | CGTCGAGAGCACATTTGGGT+TGG | + | chr1.1:80863150-80863169 | None:intergenic | 55.0% |
| ! | TGATAGCGACGACGATGACG+AGG | - | chr1.1:80861798-80861817 | MS.gene75137:intron | 55.0% |
| !! | CGCACGAGAAAGTATTCGGC+AGG | + | chr1.1:80862478-80862497 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 80861583 | 80864750 | 80861583 | ID=MS.gene75137 |
| chr1.1 | mRNA | 80861583 | 80864750 | 80861583 | ID=MS.gene75137.t1;Parent=MS.gene75137 |
| chr1.1 | exon | 80864077 | 80864750 | 80864077 | ID=MS.gene75137.t1.exon1;Parent=MS.gene75137.t1 |
| chr1.1 | CDS | 80864077 | 80864750 | 80864077 | ID=cds.MS.gene75137.t1;Parent=MS.gene75137.t1 |
| chr1.1 | exon | 80862049 | 80862130 | 80862049 | ID=MS.gene75137.t1.exon2;Parent=MS.gene75137.t1 |
| chr1.1 | CDS | 80862049 | 80862130 | 80862049 | ID=cds.MS.gene75137.t1;Parent=MS.gene75137.t1 |
| chr1.1 | exon | 80861828 | 80861939 | 80861828 | ID=MS.gene75137.t1.exon3;Parent=MS.gene75137.t1 |
| chr1.1 | CDS | 80861828 | 80861939 | 80861828 | ID=cds.MS.gene75137.t1;Parent=MS.gene75137.t1 |
| chr1.1 | exon | 80861583 | 80861719 | 80861583 | ID=MS.gene75137.t1.exon4;Parent=MS.gene75137.t1 |
| chr1.1 | CDS | 80861583 | 80861719 | 80861583 | ID=cds.MS.gene75137.t1;Parent=MS.gene75137.t1 |
| Gene Sequence |
| Protein sequence |
