AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene75158

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene75158.t1 MTR_1g115415 98.190 442 8 0 1 442 60 501 0.0 874
MS.gene75158.t1 MTR_8g105560 82.500 440 24 2 1 440 38 424 0.0 704
MS.gene75158.t1 MTR_5g068860 52.750 400 187 1 12 409 103 502 1.73e-151 441
MS.gene75158.t1 MTR_4g070060 25.556 360 258 5 45 397 235 591 4.03e-35 137
MS.gene75158.t1 MTR_2g034600 29.123 285 190 6 116 396 211 487 1.32e-28 118
MS.gene75158.t1 MTR_2g034600 22.348 264 179 5 8 267 189 430 1.98e-12 69.3
MS.gene75158.t1 MTR_2g034600 29.021 286 191 6 115 396 271 548 1.78e-28 118
MS.gene75158.t1 MTR_2g034600 22.348 264 179 5 8 267 250 491 2.26e-12 69.3
MS.gene75158.t1 MTR_2g034600 29.021 286 191 6 115 396 275 552 2.10e-28 118
MS.gene75158.t1 MTR_2g034600 22.348 264 179 5 8 267 254 495 2.34e-12 69.3
MS.gene75158.t1 MTR_6g003960 27.463 335 237 6 65 397 263 593 1.82e-27 115
MS.gene75158.t1 MTR_4g084630 22.436 312 198 5 86 392 47 319 2.56e-25 106
MS.gene75158.t1 MTR_4g084630 25.541 231 146 3 23 252 45 250 3.86e-17 82.4
MS.gene75158.t1 MTR_5g094610 27.354 223 155 4 156 373 230 450 3.62e-19 90.1
MS.gene75158.t1 MTR_5g094610 24.254 268 187 8 22 277 194 457 1.07e-15 79.3
MS.gene75158.t1 MTR_2g049780 26.923 208 116 3 222 393 99 306 5.75e-16 79.0
MS.gene75158.t1 MTR_2g067230 23.582 335 164 12 86 414 75 323 1.29e-14 75.1
MS.gene75158.t1 MTR_5g041630 27.451 255 137 7 151 397 88 302 3.49e-14 73.6
MS.gene75158.t1 MTR_3g092710 23.154 298 183 7 99 391 235 491 1.52e-12 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene75158.t1 AT2G44020 80.361 443 86 1 1 442 65 507 0.0 731
MS.gene75158.t1 AT4G02990 52.926 393 185 0 13 405 112 504 1.02e-152 444
MS.gene75158.t1 AT4G02990 52.926 393 185 0 13 405 112 504 1.02e-152 444
MS.gene75158.t1 AT2G21710 25.000 352 260 3 77 427 278 626 2.80e-39 150
MS.gene75158.t1 AT2G21710 26.070 257 176 5 7 252 272 525 1.23e-17 85.9
MS.gene75158.t1 AT1G78930 26.786 336 239 6 65 397 249 580 9.98e-32 128
MS.gene75158.t1 AT4G38160 25.912 274 194 4 128 395 54 324 2.35e-29 117
MS.gene75158.t1 AT4G38160 24.510 204 152 2 65 266 63 266 7.68e-16 79.0
MS.gene75158.t1 AT4G38160 25.912 274 194 4 128 395 54 324 2.35e-29 117
MS.gene75158.t1 AT4G38160 24.510 204 152 2 65 266 63 266 7.68e-16 79.0
MS.gene75158.t1 AT4G38160 25.912 274 194 4 128 395 54 324 5.32e-29 117
MS.gene75158.t1 AT4G38160 24.390 205 153 2 65 267 63 267 1.14e-15 78.6
MS.gene75158.t1 AT4G38160 25.912 274 194 4 128 395 54 324 5.81e-29 117
MS.gene75158.t1 AT4G38160 24.390 205 153 2 65 267 63 267 1.12e-15 79.0
MS.gene75158.t1 AT2G21710 23.929 280 211 2 77 355 278 556 5.18e-27 114
MS.gene75158.t1 AT2G21710 26.070 257 176 5 7 252 272 525 1.07e-17 85.9
MS.gene75158.t1 AT2G21710 23.741 278 210 2 77 353 278 554 4.45e-26 111
MS.gene75158.t1 AT2G21710 26.070 257 176 5 7 252 272 525 1.20e-17 85.9
MS.gene75158.t1 AT4G14605 24.870 386 269 9 14 392 97 468 1.07e-23 103
MS.gene75158.t1 AT4G14605 24.870 386 269 9 14 392 97 468 1.07e-23 103
MS.gene75158.t1 AT5G55580 26.484 219 154 4 158 371 119 335 5.94e-19 88.6
MS.gene75158.t1 AT5G55580 25.000 260 180 7 20 267 79 335 2.56e-16 80.9
MS.gene75158.t1 AT5G55580 24.312 218 159 3 84 299 117 330 1.15e-14 75.9
MS.gene75158.t1 AT5G55580 26.484 219 154 4 158 371 225 441 3.79e-18 87.0
MS.gene75158.t1 AT5G55580 25.000 260 180 7 20 267 185 441 3.49e-16 80.9
MS.gene75158.t1 AT5G55580 24.215 223 163 3 84 304 223 441 3.27e-14 75.1
MS.gene75158.t1 AT1G61970 23.823 361 252 8 54 403 58 406 4.63e-16 80.1
MS.gene75158.t1 AT1G61970 23.823 361 252 8 54 403 58 406 4.63e-16 80.1
MS.gene75158.t1 AT1G61970 23.823 361 252 8 54 403 58 406 4.63e-16 80.1
MS.gene75158.t1 AT1G61970 23.823 361 252 8 54 403 58 406 4.63e-16 80.1
MS.gene75158.t1 AT1G61970 23.823 361 252 8 54 403 58 406 4.63e-16 80.1
MS.gene75158.t1 AT1G61970 23.823 361 252 8 54 403 58 406 4.63e-16 80.1
MS.gene75158.t1 AT1G61970 23.823 361 252 8 54 403 58 406 4.63e-16 80.1
MS.gene75158.t1 AT5G54180 23.986 296 182 7 101 393 235 490 4.15e-15 77.8
MS.gene75158.t1 AT1G61980 23.824 340 236 10 77 403 81 410 1.59e-14 75.5
MS.gene75158.t1 AT1G61980 23.824 340 236 10 77 403 81 410 1.59e-14 75.5
MS.gene75158.t1 AT1G61980 23.824 340 236 10 77 403 81 410 1.59e-14 75.5
MS.gene75158.t1 AT2G34620 26.887 212 119 4 222 397 85 296 1.91e-13 71.2
MS.gene75158.t1 AT2G03050 29.317 249 151 9 158 395 39 273 6.30e-13 69.3
MS.gene75158.t1 AT2G03050 29.317 249 151 9 158 395 38 272 6.78e-13 69.3
MS.gene75158.t1 AT5G55580 25.581 172 126 2 84 253 223 394 1.15e-12 69.7
MS.gene75158.t1 AT5G55580 26.425 193 130 5 20 200 185 377 5.20e-12 67.8
MS.gene75158.t1 AT2G36000 23.506 251 169 8 158 399 79 315 3.52e-12 67.8
MS.gene75158.t1 AT2G36000 23.387 248 167 8 158 396 79 312 8.15e-12 66.6
MS.gene75158.t1 AT1G62110 22.139 402 222 10 80 403 58 446 8.35e-11 64.3

Find 104 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATCAGTATCCTTTGATTT+TGG 0.075546 1.1:-81137678 MS.gene75158:CDS
GTTGAGTTTATTCAGAAATT+AGG 0.154219 1.1:-81137719 MS.gene75158:CDS
GTTGATTACTTGGTTAATTT+AGG 0.162887 1.1:-81137299 MS.gene75158:CDS
GCTCAGTATCCACAGATTAT+TGG 0.216800 1.1:-81137137 MS.gene75158:CDS
TCCTGATGAATTGCAGGATT+TGG 0.241747 1.1:-81137777 MS.gene75158:CDS
AAAGTATAGGTCCTTCATTC+TGG 0.247502 1.1:-81136665 MS.gene75158:CDS
TTGATTACTTGGTTAATTTA+GGG 0.247846 1.1:-81137298 MS.gene75158:CDS
TCACTTATAGTTTGGAATCT+AGG 0.287748 1.1:-81136806 MS.gene75158:CDS
AGAATACTTCACTTATAGTT+TGG 0.295127 1.1:-81136814 MS.gene75158:CDS
CTTCGATTATCTCAAGGGTT+TGG 0.298946 1.1:-81137807 MS.gene75158:CDS
GTTGATTGTTTGATTAGTTT+TGG 0.307251 1.1:-81137191 MS.gene75158:CDS
CTCTTAAGCCTCTGGTATCT+AGG 0.309752 1.1:+81136777 None:intergenic
TTCGATTATCTCAAGGGTTT+GGG 0.314201 1.1:-81137806 MS.gene75158:CDS
GGATAAAGTGTTCATTGAAT+TGG 0.316271 1.1:-81136749 MS.gene75158:CDS
TTGAGTTTATTCAGAAATTA+GGG 0.329984 1.1:-81137718 MS.gene75158:CDS
CCTGTTATTAAGTTTCTTAG+AGG 0.345154 1.1:-81137521 MS.gene75158:CDS
AGCTTAAACCCTAAAAGTTC+AGG 0.348375 1.1:+81137452 None:intergenic
ATGTAGAGAAAGATGATATT+GGG 0.358260 1.1:-81137493 MS.gene75158:CDS
AATTATTCCTGATGAATTGC+AGG 0.358521 1.1:-81137783 MS.gene75158:CDS
AAACTATAAGTGAAGTATTC+TGG 0.362016 1.1:+81136816 None:intergenic
AAAGCCTCTTGTTGATTACT+TGG 0.364443 1.1:-81137309 MS.gene75158:CDS
TCAAAATGTGATTATGAAAC+CGG 0.364444 1.1:-81136997 MS.gene75158:CDS
CTAATCAAACAATCAACATT+AGG 0.365413 1.1:+81137197 None:intergenic
ATCTGAAACTATATCATTCC+CGG 0.367449 1.1:+81136620 None:intergenic
CCTCTAAGAAACTTAATAAC+AGG 0.368936 1.1:+81137521 None:intergenic
GATTATTGGATTGCCTCTTA+AGG 0.369443 1.1:-81137123 MS.gene75158:CDS
GTTGCTTATCTTGTTAGTAT+TGG 0.373295 1.1:-81137407 MS.gene75158:CDS
TTAGTATTGGTGTTAATCCT+AGG 0.373470 1.1:-81137394 MS.gene75158:CDS
GATGTAGAGAAAGATGATAT+TGG 0.374971 1.1:-81137494 MS.gene75158:CDS
TCCCCTTGCTCTTAAGCCTC+TGG 0.375995 1.1:+81136769 None:intergenic
GAAGACAATTTCGCCTTAAG+AGG 0.388607 1.1:+81137110 None:intergenic
GAGATTTGAAGAGAGATTGC+AGG 0.401297 1.1:-81136706 MS.gene75158:CDS
GTCGCAGGATGTGGCTAGTA+TGG 0.403205 1.1:-81136946 MS.gene75158:CDS
TCCTAGGGATATTGGTCCTA+TGG 0.421118 1.1:-81137378 MS.gene75158:CDS
CTCATGACTTCAACGGTTGA+AGG 0.424949 1.1:+81137749 None:intergenic
GAGAAAAGAGCTTATTTACT+TGG 0.425844 1.1:-81137245 MS.gene75158:CDS
ACCACCCTCGCAAACCCTTC+CGG 0.428125 1.1:+81137050 None:intergenic
GAATGAAGGACCTATACTTT+CGG 0.432637 1.1:+81136668 None:intergenic
TATTCAGAAATTAGGGTTAA+CGG 0.433903 1.1:-81137711 MS.gene75158:CDS
GCAATCTCTCTTCAAATCTC+TGG 0.437449 1.1:+81136709 None:intergenic
TCCGGAAGGGTTTGCGAGGG+TGG 0.445823 1.1:-81137051 MS.gene75158:CDS
ACACTAGCATGCAAAATTTG+TGG 0.449770 1.1:+81137560 None:intergenic
GGTGTTAATCCTAGGGATAT+TGG 0.451217 1.1:-81137386 MS.gene75158:CDS
TATAGTTTCAGATGAGGAAG+AGG 0.454451 1.1:-81136610 MS.gene75158:CDS
TACTTCTTCAAAAGTGAGAT+GGG 0.459036 1.1:-81136867 MS.gene75158:CDS
GGAAGGGTTTGCGAGGGTGG+TGG 0.459551 1.1:-81137048 MS.gene75158:CDS
CGAGATGCCTACTGTTACAT+GGG 0.462699 1.1:-81137876 None:intergenic
TCCAAATCCTGCAATTCATC+AGG 0.465291 1.1:+81137776 None:intergenic
GCGAAACGAGTTTCTCTTTG+CGG 0.473966 1.1:+81137840 None:intergenic
ATCCTAGCTAGAATCTTCTT+AGG 0.491214 1.1:+81137272 None:intergenic
GGGATTTCTAGGTCTAAACT+TGG 0.492563 1.1:-81137602 MS.gene75158:CDS
GTTACATGGGGTGTGATTCA+AGG 0.496359 1.1:-81137863 MS.gene75158:CDS
TACCAGAGGCTTAAGAGCAA+GGG 0.502139 1.1:-81136771 MS.gene75158:CDS
CATCATCTTCGATTATCTCA+AGG 0.503798 1.1:-81137813 MS.gene75158:CDS
GGCAATACCGTCGCAGGATG+TGG 0.504137 1.1:-81136955 MS.gene75158:CDS
TTTGAAGCTTAAGATTGATC+CGG 0.506836 1.1:-81137069 MS.gene75158:CDS
TTACTTCTTCAAAAGTGAGA+TGG 0.508844 1.1:-81136868 MS.gene75158:CDS
GGTCCTTCATTCTGGATTGG+TGG 0.510705 1.1:-81136657 MS.gene75158:CDS
GTCCTTCATTCTGGATTGGT+GGG 0.516545 1.1:-81136656 MS.gene75158:CDS
ATAGGTCCTTCATTCTGGAT+TGG 0.517859 1.1:-81136660 MS.gene75158:CDS
TAGTATTGGTGTTAATCCTA+GGG 0.522188 1.1:-81137393 MS.gene75158:CDS
ACGAGATGCCTACTGTTACA+TGG 0.523419 1.1:-81137877 None:intergenic
ATCATCTTCGATTATCTCAA+GGG 0.534022 1.1:-81137812 MS.gene75158:CDS
ATTGTTCTGCTAAAGAGAAA+CGG 0.538058 1.1:+81136557 None:intergenic
TATATCGAAACCGAAAGTAT+AGG 0.540273 1.1:-81136678 MS.gene75158:CDS
GAGGAAGGAATGTTTGCCCT+CGG 0.544202 1.1:-81137165 MS.gene75158:CDS
AGCTTAAGATTGATCCGGAA+GGG 0.556415 1.1:-81137064 MS.gene75158:CDS
TTCCCACCAATCCAGAATGA+AGG 0.560953 1.1:+81136654 None:intergenic
AGATTTGAAGAGAGATTGCA+GGG 0.561148 1.1:-81136705 MS.gene75158:CDS
GCAAAGAGAAACTCGTTTCG+CGG 0.565498 1.1:-81137838 MS.gene75158:CDS
ATACCAGAGGCTTAAGAGCA+AGG 0.565715 1.1:-81136772 MS.gene75158:CDS
CTTCAACCGTTGAAGTCATG+AGG 0.566630 1.1:-81137748 MS.gene75158:CDS
CAAAGAGAAACTCGTTTCGC+GGG 0.570276 1.1:-81137837 MS.gene75158:CDS
GAAGATTCTAGCTAGGATGT+TGG 0.572863 1.1:-81137267 MS.gene75158:CDS
TGGTAGGGCAATACCGTCGC+AGG 0.580954 1.1:-81136961 MS.gene75158:CDS
GAGACCTGTAAAAGAGCTTG+TGG 0.581965 1.1:-81136844 MS.gene75158:CDS
ACGTTCCCTCATGACTTCAA+CGG 0.586865 1.1:+81137742 None:intergenic
TAAGGATACTGTGTAACCAT+AGG 0.587849 1.1:+81137362 None:intergenic
GGTGATCAAGTGTCCTCAGT+TGG 0.594291 1.1:-81136925 MS.gene75158:CDS
ACACTACAACCCAAAATCAA+AGG 0.594517 1.1:+81137668 None:intergenic
ACCAGAGGCTTAAGAGCAAG+GGG 0.605082 1.1:-81136770 MS.gene75158:CDS
TTAACCAAGTAATCAACAAG+AGG 0.605793 1.1:+81137305 None:intergenic
TCTGAAACTATATCATTCCC+GGG 0.612098 1.1:+81136621 None:intergenic
TTGATCCGGAAGGGTTTGCG+AGG 0.614047 1.1:-81137055 MS.gene75158:CDS
GTGGGAAATTAGAGCTACCC+GGG 0.615038 1.1:-81136638 MS.gene75158:CDS
ACTCGCAGCGCAACCAACTG+AGG 0.617167 1.1:+81136912 None:intergenic
GGTGGGAAATTAGAGCTACC+CGG 0.618425 1.1:-81136639 MS.gene75158:CDS
AGAGGCAATCCAATAATCTG+TGG 0.620163 1.1:+81137128 None:intergenic
TGCCTAAGAAGATTCTAGCT+AGG 0.620780 1.1:-81137274 MS.gene75158:CDS
AAGCTTAAGATTGATCCGGA+AGG 0.621599 1.1:-81137065 MS.gene75158:CDS
GGTGGTGGAGAAGATGCCAC+AGG 0.628330 1.1:-81137033 MS.gene75158:CDS
TTCAACCGTTGAAGTCATGA+GGG 0.641557 1.1:-81137747 MS.gene75158:CDS
ACCATAGGACCAATATCCCT+AGG 0.641670 1.1:+81137377 None:intergenic
ACTTCTTCAAAAGTGAGATG+GGG 0.645282 1.1:-81136866 MS.gene75158:CDS
TGATGAAGACTAACCACCTG+TGG 0.651476 1.1:+81137017 None:intergenic
TGATCCGGAAGGGTTTGCGA+GGG 0.652425 1.1:-81137054 MS.gene75158:CDS
GAATGATATAGTTTCAGATG+AGG 0.656227 1.1:-81136616 MS.gene75158:CDS
ATACTAGCCACATCCTGCGA+CGG 0.678965 1.1:+81136948 None:intergenic
GGTGGAGAAGATGCCACAGG+TGG 0.679410 1.1:-81137030 MS.gene75158:CDS
GGATACTGAGCAATAACCGA+GGG 0.686970 1.1:+81137149 None:intergenic
GGATTAAACCTAGATACCAG+AGG 0.689589 1.1:-81136785 MS.gene75158:CDS
ATCACACCCCATGTAACAGT+AGG 0.691176 1.1:+81137869 None:intergenic
TGGATACTGAGCAATAACCG+AGG 0.722218 1.1:+81137148 None:intergenic
GAGATGCCTACTGTTACATG+GGG 0.725465 1.1:-81137875 MS.gene75158:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGAGTTTATTCAGAAATTA+GGG - chr1.1:81136720-81136739 MS.gene75158:CDS 20.0%
!! TTGATTACTTGGTTAATTTA+GGG - chr1.1:81137140-81137159 MS.gene75158:CDS 20.0%
!!! AAAAATATCCTGAACTTTTA+GGG - chr1.1:81136978-81136997 MS.gene75158:CDS 20.0%
!!! TAGGGTATTTAGAAAAAATT+GGG - chr1.1:81136816-81136835 MS.gene75158:CDS 20.0%
!!! TTAGGGTATTTAGAAAAAAT+TGG - chr1.1:81136815-81136834 MS.gene75158:CDS 20.0%
! AGAATACTTCACTTATAGTT+TGG - chr1.1:81137624-81137643 MS.gene75158:CDS 25.0%
! ATGTAGAGAAAGATGATATT+GGG - chr1.1:81136945-81136964 MS.gene75158:CDS 25.0%
! CTAATCAAACAATCAACATT+AGG + chr1.1:81137244-81137263 None:intergenic 25.0%
! GTTGAGTTTATTCAGAAATT+AGG - chr1.1:81136719-81136738 MS.gene75158:CDS 25.0%
! GTTGATTACTTGGTTAATTT+AGG - chr1.1:81137139-81137158 MS.gene75158:CDS 25.0%
! TAGAAAAAATTGGGATTTCT+AGG - chr1.1:81136825-81136844 MS.gene75158:CDS 25.0%
! TATTCAGAAATTAGGGTTAA+CGG - chr1.1:81136727-81136746 MS.gene75158:CDS 25.0%
! TCAAAATGTGATTATGAAAC+CGG - chr1.1:81137441-81137460 MS.gene75158:CDS 25.0%
!! AAAAACATGATTCCTGTTTT+AGG - chr1.1:81136797-81136816 MS.gene75158:CDS 25.0%
!! AAAACATGATTCCTGTTTTA+GGG - chr1.1:81136798-81136817 MS.gene75158:CDS 25.0%
!! AAACTATAAGTGAAGTATTC+TGG + chr1.1:81137625-81137644 None:intergenic 25.0%
!! CAAAAATATCCTGAACTTTT+AGG - chr1.1:81136977-81136996 MS.gene75158:CDS 25.0%
!! TTTTCTAAATACCCTAAAAC+AGG + chr1.1:81136812-81136831 None:intergenic 25.0%
!!! AAATCAGTATCCTTTGATTT+TGG - chr1.1:81136760-81136779 MS.gene75158:CDS 25.0%
!!! AATCAGTATCCTTTGATTTT+GGG - chr1.1:81136761-81136780 MS.gene75158:CDS 25.0%
!!! ACACAGTATCCTTATTTTTT+AGG - chr1.1:81137085-81137104 MS.gene75158:CDS 25.0%
!!! CACAGTATCCTTATTTTTTA+GGG - chr1.1:81137086-81137105 MS.gene75158:CDS 25.0%
!!! GTTGATTGTTTGATTAGTTT+TGG - chr1.1:81137247-81137266 MS.gene75158:CDS 25.0%
AATTATTCCTGATGAATTGC+AGG - chr1.1:81136655-81136674 MS.gene75158:CDS 30.0%
ACTCTCATCCCTAAAAAATA+AGG + chr1.1:81137097-81137116 None:intergenic 30.0%
ATCATCTTCGATTATCTCAA+GGG - chr1.1:81136626-81136645 MS.gene75158:CDS 30.0%
CCTGTTATTAAGTTTCTTAG+AGG - chr1.1:81136917-81136936 MS.gene75158:CDS 30.0%
GAATGATATAGTTTCAGATG+AGG - chr1.1:81137822-81137841 MS.gene75158:CDS 30.0%
GAGAAAAGAGCTTATTTACT+TGG - chr1.1:81137193-81137212 MS.gene75158:CDS 30.0%
GATGTAGAGAAAGATGATAT+TGG - chr1.1:81136944-81136963 MS.gene75158:CDS 30.0%
GTTGCTTATCTTGTTAGTAT+TGG - chr1.1:81137031-81137050 MS.gene75158:CDS 30.0%
TACTTCTTCAAAAGTGAGAT+GGG - chr1.1:81137571-81137590 MS.gene75158:CDS 30.0%
TTAACCAAGTAATCAACAAG+AGG + chr1.1:81137136-81137155 None:intergenic 30.0%
TTACTTCTTCAAAAGTGAGA+TGG - chr1.1:81137570-81137589 MS.gene75158:CDS 30.0%
! ATCTGAAACTATATCATTCC+CGG + chr1.1:81137821-81137840 None:intergenic 30.0%
! CCTCTAAGAAACTTAATAAC+AGG + chr1.1:81136920-81136939 None:intergenic 30.0%
! GGATAAAGTGTTCATTGAAT+TGG - chr1.1:81137689-81137708 MS.gene75158:CDS 30.0%
! TATATCGAAACCGAAAGTAT+AGG - chr1.1:81137760-81137779 MS.gene75158:CDS 30.0%
! TCACTTATAGTTTGGAATCT+AGG - chr1.1:81137632-81137651 MS.gene75158:CDS 30.0%
! TTTGAAGCTTAAGATTGATC+CGG - chr1.1:81137369-81137388 MS.gene75158:CDS 30.0%
!! TAGTATTGGTGTTAATCCTA+GGG - chr1.1:81137045-81137064 MS.gene75158:CDS 30.0%
!! TTAGTATTGGTGTTAATCCT+AGG - chr1.1:81137044-81137063 MS.gene75158:CDS 30.0%
!!! GTTTGATTAGTTTTGGTTTG+AGG - chr1.1:81137254-81137273 MS.gene75158:CDS 30.0%
!!! TATTTTTTAGGGATGAGAGT+TGG - chr1.1:81137097-81137116 MS.gene75158:CDS 30.0%
AAAGTATAGGTCCTTCATTC+TGG - chr1.1:81137773-81137792 MS.gene75158:CDS 35.0%
ACACTACAACCCAAAATCAA+AGG + chr1.1:81136773-81136792 None:intergenic 35.0%
ACACTAGCATGCAAAATTTG+TGG + chr1.1:81136881-81136900 None:intergenic 35.0%
ACTTCTTCAAAAGTGAGATG+GGG - chr1.1:81137572-81137591 MS.gene75158:CDS 35.0%
AGATTTGAAGAGAGATTGCA+GGG - chr1.1:81137733-81137752 MS.gene75158:CDS 35.0%
AGCTTAAACCCTAAAAGTTC+AGG + chr1.1:81136989-81137008 None:intergenic 35.0%
ATCCTAGCTAGAATCTTCTT+AGG + chr1.1:81137169-81137188 None:intergenic 35.0%
CATCATCTTCGATTATCTCA+AGG - chr1.1:81136625-81136644 MS.gene75158:CDS 35.0%
CTACCAAGTAAAAACTCAAC+CGG + chr1.1:81137463-81137482 None:intergenic 35.0%
GAATGAAGGACCTATACTTT+CGG + chr1.1:81137773-81137792 None:intergenic 35.0%
GATTATTGGATTGCCTCTTA+AGG - chr1.1:81137315-81137334 MS.gene75158:CDS 35.0%
TAAGGATACTGTGTAACCAT+AGG + chr1.1:81137079-81137098 None:intergenic 35.0%
TATAGTTTCAGATGAGGAAG+AGG - chr1.1:81137828-81137847 MS.gene75158:CDS 35.0%
TTCGATTATCTCAAGGGTTT+GGG - chr1.1:81136632-81136651 MS.gene75158:CDS 35.0%
! AAACCGGTTGAGTTTTTACT+TGG - chr1.1:81137457-81137476 MS.gene75158:CDS 35.0%
! AAAGCCTCTTGTTGATTACT+TGG - chr1.1:81137129-81137148 MS.gene75158:CDS 35.0%
! GGTTGAGTTTTTACTTGGTA+GGG - chr1.1:81137462-81137481 MS.gene75158:CDS 35.0%
! TCTGAAACTATATCATTCCC+GGG + chr1.1:81137820-81137839 None:intergenic 35.0%
!!! CTTTTAGGGTTTAAGCTTGA+AGG - chr1.1:81136992-81137011 MS.gene75158:CDS 35.0%
!!! GATTAGTTTTGGTTTGAGGA+AGG - chr1.1:81137258-81137277 MS.gene75158:CDS 35.0%
AAGCTTAAGATTGATCCGGA+AGG - chr1.1:81137373-81137392 MS.gene75158:CDS 40.0%
AGAGGCAATCCAATAATCTG+TGG + chr1.1:81137313-81137332 None:intergenic 40.0%
AGCTTAAGATTGATCCGGAA+GGG - chr1.1:81137374-81137393 MS.gene75158:CDS 40.0%
ATAGGTCCTTCATTCTGGAT+TGG - chr1.1:81137778-81137797 MS.gene75158:CDS 40.0%
CTTCGATTATCTCAAGGGTT+TGG - chr1.1:81136631-81136650 MS.gene75158:CDS 40.0%
GAAGACAATTTCGCCTTAAG+AGG + chr1.1:81137331-81137350 None:intergenic 40.0%
GAGATTTGAAGAGAGATTGC+AGG - chr1.1:81137732-81137751 MS.gene75158:CDS 40.0%
GCAATCTCTCTTCAAATCTC+TGG + chr1.1:81137732-81137751 None:intergenic 40.0%
GCTCAGTATCCACAGATTAT+TGG - chr1.1:81137301-81137320 MS.gene75158:CDS 40.0%
GGATTAAACCTAGATACCAG+AGG - chr1.1:81137653-81137672 MS.gene75158:CDS 40.0%
GGTGTTAATCCTAGGGATAT+TGG - chr1.1:81137052-81137071 MS.gene75158:CDS 40.0%
TCCAAATCCTGCAATTCATC+AGG + chr1.1:81136665-81136684 None:intergenic 40.0%
TCCTGATGAATTGCAGGATT+TGG - chr1.1:81136661-81136680 MS.gene75158:CDS 40.0%
TTCAACCGTTGAAGTCATGA+GGG - chr1.1:81136691-81136710 MS.gene75158:CDS 40.0%
! AACTCCACAAGCTCTTTTAC+AGG + chr1.1:81137601-81137620 None:intergenic 40.0%
! CGGTTGAGTTTTTACTTGGT+AGG - chr1.1:81137461-81137480 MS.gene75158:CDS 40.0%
! GAAGATTCTAGCTAGGATGT+TGG - chr1.1:81137171-81137190 MS.gene75158:CDS 40.0%
! GGGATTTCTAGGTCTAAACT+TGG - chr1.1:81136836-81136855 MS.gene75158:CDS 40.0%
! TGCCTAAGAAGATTCTAGCT+AGG - chr1.1:81137164-81137183 MS.gene75158:CDS 40.0%
ACCATAGGACCAATATCCCT+AGG + chr1.1:81137064-81137083 None:intergenic 45.0%
ACGTTCCCTCATGACTTCAA+CGG + chr1.1:81136699-81136718 None:intergenic 45.0%
ATACCAGAGGCTTAAGAGCA+AGG - chr1.1:81137666-81137685 MS.gene75158:CDS 45.0%
ATCACACCCCATGTAACAGT+AGG + chr1.1:81136572-81136591 None:intergenic 45.0%
CAAAGAGAAACTCGTTTCGC+GGG - chr1.1:81136601-81136620 MS.gene75158:CDS 45.0%
CTCATGACTTCAACGGTTGA+AGG + chr1.1:81136692-81136711 None:intergenic 45.0%
CTCTTAAGCCTCTGGTATCT+AGG + chr1.1:81137664-81137683 None:intergenic 45.0%
CTTCAACCGTTGAAGTCATG+AGG - chr1.1:81136690-81136709 MS.gene75158:CDS 45.0%
GAGACCTGTAAAAGAGCTTG+TGG - chr1.1:81137594-81137613 MS.gene75158:CDS 45.0%
GCAAAGAGAAACTCGTTTCG+CGG - chr1.1:81136600-81136619 MS.gene75158:CDS 45.0%
GCGAAACGAGTTTCTCTTTG+CGG + chr1.1:81136601-81136620 None:intergenic 45.0%
GGATACTGAGCAATAACCGA+GGG + chr1.1:81137292-81137311 None:intergenic 45.0%
GTTACATGGGGTGTGATTCA+AGG - chr1.1:81136575-81136594 MS.gene75158:CDS 45.0%
TACCAGAGGCTTAAGAGCAA+GGG - chr1.1:81137667-81137686 MS.gene75158:CDS 45.0%
TCCTAGGGATATTGGTCCTA+TGG - chr1.1:81137060-81137079 MS.gene75158:CDS 45.0%
TGATGAAGACTAACCACCTG+TGG + chr1.1:81137424-81137443 None:intergenic 45.0%
TGGATACTGAGCAATAACCG+AGG + chr1.1:81137293-81137312 None:intergenic 45.0%
TTCCCACCAATCCAGAATGA+AGG + chr1.1:81137787-81137806 None:intergenic 45.0%
!! GTCCTTCATTCTGGATTGGT+GGG - chr1.1:81137782-81137801 MS.gene75158:CDS 45.0%
ACCAGAGGCTTAAGAGCAAG+GGG - chr1.1:81137668-81137687 MS.gene75158:CDS 50.0%
ATACTAGCCACATCCTGCGA+CGG + chr1.1:81137493-81137512 None:intergenic 50.0%
GAGGAAGGAATGTTTGCCCT+CGG - chr1.1:81137273-81137292 MS.gene75158:CDS 50.0%
GGTGATCAAGTGTCCTCAGT+TGG - chr1.1:81137513-81137532 MS.gene75158:CDS 50.0%
GGTGGGAAATTAGAGCTACC+CGG - chr1.1:81137799-81137818 MS.gene75158:CDS 50.0%
GTGGGAAATTAGAGCTACCC+GGG - chr1.1:81137800-81137819 MS.gene75158:CDS 50.0%
! GGTCCTTCATTCTGGATTGG+TGG - chr1.1:81137781-81137800 MS.gene75158:CDS 50.0%
GTCGCAGGATGTGGCTAGTA+TGG - chr1.1:81137492-81137511 MS.gene75158:CDS 55.0%
TCCCCTTGCTCTTAAGCCTC+TGG + chr1.1:81137672-81137691 None:intergenic 55.0%
TGATCCGGAAGGGTTTGCGA+GGG - chr1.1:81137384-81137403 MS.gene75158:CDS 55.0%
TTGATCCGGAAGGGTTTGCG+AGG - chr1.1:81137383-81137402 MS.gene75158:CDS 55.0%
ACCACCCTCGCAAACCCTTC+CGG + chr1.1:81137391-81137410 None:intergenic 60.0%
ACTCGCAGCGCAACCAACTG+AGG + chr1.1:81137529-81137548 None:intergenic 60.0%
GGCAATACCGTCGCAGGATG+TGG - chr1.1:81137483-81137502 MS.gene75158:CDS 60.0%
GGTGGAGAAGATGCCACAGG+TGG - chr1.1:81137408-81137427 MS.gene75158:CDS 60.0%
TGGTAGGGCAATACCGTCGC+AGG - chr1.1:81137477-81137496 MS.gene75158:CDS 60.0%
!! GGTGGTGGAGAAGATGCCAC+AGG - chr1.1:81137405-81137424 MS.gene75158:CDS 60.0%
GGAAGGGTTTGCGAGGGTGG+TGG - chr1.1:81137390-81137409 MS.gene75158:CDS 65.0%
TCCGGAAGGGTTTGCGAGGG+TGG - chr1.1:81137387-81137406 MS.gene75158:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 81136566 81137894 81136566 ID=MS.gene75158
chr1.1 mRNA 81136566 81137894 81136566 ID=MS.gene75158.t1;Parent=MS.gene75158
chr1.1 exon 81136566 81137894 81136566 ID=MS.gene75158.t1.exon1;Parent=MS.gene75158.t1
chr1.1 CDS 81136566 81137894 81136566 ID=cds.MS.gene75158.t1;Parent=MS.gene75158.t1
Gene Sequence

>MS.gene75158

ATGCCTACTGTTACATGGGGTGTGATTCAAGGCCGCAAAGAGAAACTCGTTTCGCGGGTCATCATCTTCGATTATCTCAAGGGTTTGGGAATTATTCCTGATGAATTGCAGGATTTGGAGCTTCCTTCAACCGTTGAAGTCATGAGGGAACGTGTTGAGTTTATTCAGAAATTAGGGTTAACGGTTGATGATATAAATCAGTATCCTTTGATTTTGGGTTGTAGTGTTAGAAAAAACATGATTCCTGTTTTAGGGTATTTAGAAAAAATTGGGATTTCTAGGTCTAAACTTGGTGAATTTATTAAGAATTATCCACAAATTTTGCATGCTAGTGTTATTGTTGAGCTTTCTCCTGTTATTAAGTTTCTTAGAGGACTTGATGTAGAGAAAGATGATATTGGGTTTGTGTTGCAAAAATATCCTGAACTTTTAGGGTTTAAGCTTGAAGGTACTATGAGTACTTCAGTTGCTTATCTTGTTAGTATTGGTGTTAATCCTAGGGATATTGGTCCTATGGTTACACAGTATCCTTATTTTTTAGGGATGAGAGTTGGTACTATGATAAAGCCTCTTGTTGATTACTTGGTTAATTTAGGGTTGCCTAAGAAGATTCTAGCTAGGATGTTGGAGAAAAGAGCTTATTTACTTGGTTATGATCTTGAAGAGACTGTGAAACCTAATGTTGATTGTTTGATTAGTTTTGGTTTGAGGAAGGAATGTTTGCCCTCGGTTATTGCTCAGTATCCACAGATTATTGGATTGCCTCTTAAGGCGAAATTGTCTTCGCAACAGTATTTTTTTAGTTTGAAGCTTAAGATTGATCCGGAAGGGTTTGCGAGGGTGGTGGAGAAGATGCCACAGGTGGTTAGTCTTCATCAAAATGTGATTATGAAACCGGTTGAGTTTTTACTTGGTAGGGCAATACCGTCGCAGGATGTGGCTAGTATGGTGATCAAGTGTCCTCAGTTGGTTGCGCTGCGAGTTGAGCTCATGAAGAACAGTTATTACTTCTTCAAAAGTGAGATGGGGAGACCTGTAAAAGAGCTTGTGGAGTTTCCAGAATACTTCACTTATAGTTTGGAATCTAGGATTAAACCTAGATACCAGAGGCTTAAGAGCAAGGGGATAAAGTGTTCATTGAATTGGATGCTGAATTGTAGTGACCAGAGATTTGAAGAGAGATTGCAGGGCAATTATATCGAAACCGAAAGTATAGGTCCTTCATTCTGGATTGGTGGGAAATTAGAGCTACCCGGGAATGATATAGTTTCAGATGAGGAAGAGGAGAGTGATGATGAAATGCTATACAGAAGAACCGTTTCTCTTTAG
Protein sequence

>MS.gene75158.t1

MPTVTWGVIQGRKEKLVSRVIIFDYLKGLGIIPDELQDLELPSTVEVMRERVEFIQKLGLTVDDINQYPLILGCSVRKNMIPVLGYLEKIGISRSKLGEFIKNYPQILHASVIVELSPVIKFLRGLDVEKDDIGFVLQKYPELLGFKLEGTMSTSVAYLVSIGVNPRDIGPMVTQYPYFLGMRVGTMIKPLVDYLVNLGLPKKILARMLEKRAYLLGYDLEETVKPNVDCLISFGLRKECLPSVIAQYPQIIGLPLKAKLSSQQYFFSLKLKIDPEGFARVVEKMPQVVSLHQNVIMKPVEFLLGRAIPSQDVASMVIKCPQLVALRVELMKNSYYFFKSEMGRPVKELVEFPEYFTYSLESRIKPRYQRLKSKGIKCSLNWMLNCSDQRFEERLQGNYIETESIGPSFWIGGKLELPGNDIVSDEEEESDDEMLYRRTVSL